Citrus Sinensis ID: 032003

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICFV
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHcccEEEccHHHHHHHHHcccccccccccccccEEccccccHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccHEHccccccccEEEEEHHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHccccEcccccHEEHEEcccccHccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEccccccccccEccccccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
mvtmdqetageLDYVFLCVLPLFHVFGLAvitcgqlqkgsciILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKhglvkkfdlsslklvgsgaaplGKELMEECaknvpsatVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICFV
Flexible Loop (DISEMBL)
mvtmdqetAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICFV
Low Complexity Region (SEG)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICFV
Disordered region (IsUnstruct)
**********ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICF*
Disordered Region (DISOPRED)
**T*****AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICFV
Disordered Region (DISEMBL)
********AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICFV
Disordered Region (DISPRO)
*****QE***ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICFV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRFDEFCIFFICFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.791	0.216	0.652	2e-43
Q0DV32	552	4-coumarate--CoA ligase-l	no	no	0.791	0.213	0.559	3e-36
P31687	562	4-coumarate--CoA ligase 2	no	no	0.697	0.185	0.528	1e-23
Q9S777	561	4-coumarate--CoA ligase 3	no	no	0.697	0.185	0.471	2e-22
P31684	545	4-coumarate--CoA ligase 1	N/A	no	0.711	0.194	0.481	2e-21
P31685	545	4-coumarate--CoA ligase 2	N/A	no	0.711	0.194	0.481	3e-21
Q42982	569	Probable 4-coumarate--CoA	no	no	0.697	0.182	0.490	4e-21
P14913	544	4-coumarate--CoA ligase 1	N/A	no	0.697	0.191	0.471	6e-21
P14912	544	4-coumarate--CoA ligase 1	N/A	no	0.697	0.191	0.471	6e-21
Q9S725	556	4-coumarate--CoA ligase 2	no	no	0.711	0.190	0.452	7e-21

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  174 bits (441), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/118 (65%), Positives = 98/118 (83%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++Q
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ 338

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  150 bits (379), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/118 (55%), Positives = 90/118 (76%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVT DQ+   E   VFLC LP+FH+FGL+VIT  QL +G+ II M++FD+   + A+++H
Sbjct: 228 MVTSDQDERREGPNVFLCFLPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRH 287

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           RVTH++ VPP+I+ALAKHG   K+DLSSLK +GSGAAPLGK++ME  AK  P + ++Q
Sbjct: 288 RVTHLFCVPPVIIALAKHGKAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQ 345

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 72/104 (69%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLPLFH+F L  +    L+ GS ++LM KF++   L  I++HRV+   VVPPL+LA
Sbjct: 246 VLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSVAMVVPPLVLA 305

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           LAK+ +V  FDLSS++LV SGAAPLGKEL E     +P A + Q
Sbjct: 306 LAKNPMVADFDLSSIRLVLSGAAPLGKELEEALRNRMPQAVLGQ 349

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 71/104 (68%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct: 252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + Q
Sbjct: 312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQ 355

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31684|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 70/106 (66%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +CVLPLFH++ L  +    L+ G+ I++M KFD+  FL  I KH+VT    VPP++
Sbjct: 229 DDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIV 288

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           LA+AK  LV  +DLSS++ V SGAAPLGKEL +      P+A + Q
Sbjct: 289 LAIAKSPLVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ 334

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31685|4CL2_SOLTU 4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 70/106 (66%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +CVLPLFH++ L  +    L+ G+ I++M KFD+  FL  I KH+VT    VPP++
Sbjct: 229 DDVLMCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIV 288

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           LA+AK  LV  +DLSS++ V SGAAPLGKEL +      P+A + Q
Sbjct: 289 LAIAKSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ 334

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q42982|4CL2_ORYSJ Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2

 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 70/104 (67%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLPLFH+F L  +    ++ G+ + LM +F++   L AIE+ RVT   VVPPL+LA
Sbjct: 258 VALCVLPLFHIFSLNSVLLCAVRAGAAVALMPRFEMGAMLGAIERWRVTVAAVVPPLVLA 317

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           LAK+  V++ DLSS+++V SGAAPLGKEL +     +P A   Q
Sbjct: 318 LAKNPFVERHDLSSIRIVLSGAAPLGKELEDALRARLPQAIFGQ 361

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P14913|4CL2_PETCR 4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 71/104 (68%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +C+LPLFH++ L  + C  L+ G  I++M KFD+  FL  I+K++VT    VPP++LA
Sbjct: 229 VMICILPLFHIYSLNAVLCCGLRAGVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLA 288

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +AK  +V K+DLSS++ V SGAAPLGKEL +      P+A + Q
Sbjct: 289 IAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ 332

Petroselinum crispum (taxid: 4043)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P14912|4CL1_PETCR 4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 71/104 (68%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +C+LPLFH++ L  + C  L+ G  I++M KFD+  FL  I+K++VT    VPP++LA
Sbjct: 229 VMICILPLFHIYSLNAVLCCGLRAGVTILIMQKFDIVPFLELIQKYKVTIGPFVPPIVLA 288

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +AK  +V K+DLSS++ V SGAAPLGKEL +      P+A + Q
Sbjct: 289 IAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ 332

Petroselinum crispum (taxid: 4043)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 73/106 (68%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct: 240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + Q
Sbjct: 300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQ 345

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.791	0.217	0.686	2e-43
255565415	542	AMP dependent CoA ligase, putative [Rici	0.791	0.217	0.686	2e-42
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.791	0.217	0.652	8e-42
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.791	0.216	0.652	8e-42
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.791	0.216	0.652	1e-41
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.791	0.217	0.652	3e-41
312281669	543	unnamed protein product [Thellungiella h	0.791	0.217	0.635	6e-40
373432591	540	4-coumarate--CoA ligase-like 7-like [Gly	0.791	0.218	0.661	5e-39
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.791	0.217	0.661	8e-39
225436506	544	PREDICTED: 4-coumarate--CoA ligase-like	0.791	0.216	0.635	2e-38

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/118 (68%), Positives = 99/118 (83%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MV+MDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM LR IEK+
Sbjct: 220 MVSMDQVMAGEIHNVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           RVTH+WVVPP+ILAL+K  LVKK+DLSSL+ +GSGAAPLGK+LM+ECAKN+P  T+IQ
Sbjct: 280 RVTHMWVVPPVILALSKQNLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQ 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 97/118 (82%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQE AGEL  VFLC LP+FHVFGLAVI   QLQ G+ ++ M KFD E+ L+A+EK+
Sbjct: 219 MITMDQEIAGELHNVFLCFLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKY 278

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           R+TH+WVVPP+ILALAK  LVKK+DLSSL+ VGSGAAPL KELMEECAK +P A + Q
Sbjct: 279 RITHLWVVPPVILALAKQSLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQ 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/118 (65%), Positives = 100/118 (84%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTM+Q+  GE+D VFLC LP+FHVFGLA+IT  QLQ+G+ +I MA+FDLE  L+ +EK+
Sbjct: 220 MVTMEQDLVGEMDNVFLCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +VTH+WVVPP+ILAL+K+ +VKKF+LSS+K +GSGAAPLGK+LMEEC+K VP   V Q
Sbjct: 280 KVTHLWVVPPVILALSKNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQ 337

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 77/118 (65%), Positives = 98/118 (83%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ ++ MAKF+LE+ L+ IEK+
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKY 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++Q
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ 338

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/118 (65%), Positives = 98/118 (83%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++Q
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/118 (65%), Positives = 96/118 (81%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM L+ IEKH
Sbjct: 220 MVTMDQAMAGEMHDVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKH 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           RVT +WVVPP++LALAK  +VKK+D+SSL+ +GSGAAPLGK+LM+ECAKN+P   + Q
Sbjct: 280 RVTDMWVVPPVVLALAKQDMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQ 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/118 (63%), Positives = 95/118 (80%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ +I MAKF+LE  L+ IEK+
Sbjct: 220 MVTMDQDLMGEYHAVFLCFLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           RVT +WVVPP+ LAL+K  +VKK+DLSSLK +GSGAAPLGK+LMEEC +N+ +  ++Q
Sbjct: 280 RVTQLWVVPPVFLALSKQSIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQ 337

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373432591|ref|NP_001243292.1| 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|370316591|gb|AEX25890.1| 4-coumarate:CoA ligase [Glycine max]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 95/118 (80%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+  D + AG L  VFLCVLP+FHVFGL VI+ GQLQ+GS ++ + KF+ E+ L+ IEK 
Sbjct: 217 MIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKF 276

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +VTH+WVVPP+ILALAKHGLV K+DLSSLK +GSGAAPLGKELM+ECAK  P A V Q
Sbjct: 277 KVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQ 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 78/118 (66%), Positives = 95/118 (80%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQ   GE   VFL  LP+FHVFGLA IT  QLQKG+ ++ M KF+LE  L A+EK+
Sbjct: 220 MITMDQTFNGEEHGVFLNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +VT +WVVPP++LALAK  LVKK++LSS+K VGSGAAPLG+ELMEECA N+PSA VIQ
Sbjct: 280 KVTDLWVVPPVVLALAKQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQ 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436506|ref|XP_002276353.1| PREDICTED: 4-coumarate--CoA ligase-like 7 [Vitis vinifera]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 96/118 (81%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMD+E  GE+  VFLC LP+FHVFGLAV+ C QLQ G  I+ M KFDL++ L++IEK+
Sbjct: 221 MVTMDEELMGEMHNVFLCFLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKY 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           RVTH+W+VPP++LAL K G + ++D+SSLK +GSGAAPLGKELMEECAK++P   V Q
Sbjct: 281 RVTHMWLVPPVMLALVKQGKLDRYDISSLKHIGSGAAPLGKELMEECAKSLPHVAVGQ 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.791	0.216	0.652	2.3e-39
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.697	0.185	0.471	1.2e-20
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.704	0.187	0.448	1.5e-19
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.711	0.190	0.452	1.9e-19
ASPGD|ASPL0000006875	562	AN5990 [Emericella nidulans (t	0.597	0.158	0.471	3e-18
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.704	0.186	0.433	3.9e-18
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.711	0.192	0.379	2.7e-17
UNIPROTKB|G4MS65	557	MGG_04548 "4-coumarate-CoA lig	0.604	0.161	0.477	4.6e-17
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.691	0.188	0.390	3.2e-16
ASPGD|ASPL0000054705	560	AN0649 [Emericella nidulans (t	0.610	0.162	0.440	1.5e-15

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 77/118 (65%), Positives = 98/118 (83%)

Query:     1 MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
             MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct:   221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query:    61 RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
             RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++Q
Sbjct:   281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 49/104 (47%), Positives = 71/104 (68%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct:   252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query:    75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
             LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + Q
Sbjct:   312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQ 355

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 48/107 (44%), Positives = 76/107 (71%)

Query:    13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
             D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct:   247 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 305

Query:    72 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
             +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + Q
Sbjct:   306 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 352

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 48/106 (45%), Positives = 73/106 (68%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct:   240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
             LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + Q
Sbjct:   300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQ 345

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

ASPGD|ASPL0000006875 AN5990 [Emericella nidulans (taxid:162425)]

 Score = 229 (85.7 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 42/89 (47%), Positives = 65/89 (73%)

Query:    17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
             L  LP FH++GL  +    + KG  + +MAKFDLE + + ++ +R+T  +VVPP++L L 
Sbjct:   236 LAFLPFFHIYGLTCLVHQTIYKGYELFVMAKFDLEKWCQHVQNYRITFSYVVPPVVLLLG 295

Query:    77 KHGLVKKFDLSSLKLVGSGAAPLGKELME 105
             KH +V+K+DLSSL+++ SGAAPL +EL+E
Sbjct:   296 KHPIVEKYDLSSLRMMNSGAAPLTQELVE 324

GO:0006631 "fatty acid metabolic process" evidence=RCA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 3.9e-18, P = 3.9e-18
 Identities = 46/106 (43%), Positives = 68/106 (64%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct:   248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
             +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++Q
Sbjct:   307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQ 352

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 41/108 (37%), Positives = 67/108 (62%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct:   237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query:    73 LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
             +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++Q
Sbjct:   297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQ 344

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

UNIPROTKB|G4MS65 MGG_04548 "4-coumarate-CoA ligase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 218 (81.8 bits), Expect = 4.6e-17, P = 4.6e-17
 Identities = 43/90 (47%), Positives = 61/90 (67%)

Query:    17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
             L V P FHV+GL          G  +++M++FD+E     IEKHR+T+I+V PP++LA A
Sbjct:   239 LGVTPFFHVYGLLSCVLSSAYFGWELVIMSRFDMEQACALIEKHRITYIYVPPPIVLAFA 298

Query:    77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
             K  +  ++DLSSLK++ SGAAPL +EL EE
Sbjct:   299 KSPICDRYDLSSLKMLHSGAAPLTRELTEE 328

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 41/105 (39%), Positives = 68/105 (64%)

Query:    16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
             F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct:   234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query:    76 AKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
                   +K K+DLSS+  V  G APL KE+ E  A+  P+  ++Q
Sbjct:   294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQ 338

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

ASPGD|ASPL0000054705 AN0649 [Emericella nidulans (taxid:162425)]

 Score = 204 (76.9 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 41/93 (44%), Positives = 60/93 (64%)

Query:    16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
             +LC LP++H     +     L +G  + +M KFD    L   EK R++   +VPP+++AL
Sbjct:   242 WLCFLPMYHAMAQNIFIAAALNRGVPVYVMPKFDFIKMLEYTEKFRISDYILVPPVVVAL 301

Query:    76 AKHGLVK--KFDLSSLKLVGSGAAPLGKELMEE 106
             AKH  VK  K+DLSS++ +GSGAAPLG+E+ EE
Sbjct:   302 AKHPAVKSGKYDLSSVEDIGSGAAPLGREVCEE 334

GO:0006631 "fatty acid metabolic process" evidence=RCA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-51
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-34
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-31
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-27
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	6e-25
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-24
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	5e-24
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-23
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-21
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-20
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	9e-20
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-19
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-18
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-18
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	6e-18
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-17
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-16
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-16
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-16
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	4e-16
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-14
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	4e-14
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-14
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	5e-14
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	6e-14
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	6e-13
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	8e-13
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-12
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	1e-11
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-11
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	6e-11
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	8e-11
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	5e-10
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-09
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-09
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-09
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	2e-09
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-09
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-09
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-09
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	6e-09
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-08
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-07
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	2e-07
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	3e-07
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-07
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	6e-07
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	7e-07
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	7e-07
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-06
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-06
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-06
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	2e-06
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-06
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-06
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	3e-06
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	3e-06
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	6e-06
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	6e-06
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-06
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	7e-06
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	7e-06
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-05
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-05
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	6e-05
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	6e-05
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	7e-05
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	8e-05
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	9e-05
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-04
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-04
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	2e-04
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	2e-04
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-04
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	2e-04
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-04
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	8e-04
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	9e-04
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	0.001
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	0.001
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	0.003
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	0.003
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	0.003
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	0.003
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	0.004
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	0.004

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  169 bits (431), Expect = 3e-51
 Identities = 59/118 (50%), Positives = 81/118 (68%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            +   +    + + V LCVLP+FH++GL VI    L+ G+ +++M +FDLE FL AIEK+
Sbjct: 189 QLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKY 248

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +VTH+ VVPP++LAL KH +V K+DLSSLK +GSGAAPLGKEL E      P   + Q
Sbjct: 249 KVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQ 306

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  123 bits (312), Expect = 4e-34
 Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 1/119 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           +    +      + V L  LP +H +GL   T   L  G+ +I+M KFD E FL+ IEK+
Sbjct: 178 VQDTLKGNPDSSNDVVLTFLPFYHAYGLT-TTLASLLCGATVIIMPKFDSETFLKLIEKY 236

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
           +VT +++VPP+ +ALAK  LV K+DLSSL+++ SGAAPL KEL EE  K  P+ T+ Q 
Sbjct: 237 KVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQG 295

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  115 bits (291), Expect = 4e-31
 Identities = 51/107 (47%), Positives = 78/107 (72%), Gaps = 2/107 (1%)

Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +V+ CG L+ G+ I++M KF++   L  I++H+VT    VPP+
Sbjct: 224 DDVILCVLPMFHIYSLNSVLLCG-LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPI 282

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +LA+AK  +V+K+DLSS+++V SGAAPLGKEL +     +P+A + Q
Sbjct: 283 VLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQ 329

Length = 537

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  104 bits (261), Expect = 1e-27
 Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            V            V+L   PL+H  G   +    L  G  ++LM KFD E  L  IE+H
Sbjct: 30  AVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPA-LAAGGTVVLMPKFDPEAVLDLIERH 88

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           RVTH ++VP +   L +     ++DLSSL+L+  GAAP+  EL   
Sbjct: 89  RVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAAPMPAELKRA 134

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 97.0 bits (242), Expect = 6e-25
 Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 2/106 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLIL 73
           V L VLPLFHV G      G L  G  ++L   F     FL  IE++RVT ++ VP L  
Sbjct: 43  VLLSVLPLFHVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYD 102

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
           ALAK    + +DLSSL+L+ SG  PL  EL+E   +  P A +++ 
Sbjct: 103 ALAKAAEDRGYDLSSLRLLISGGEPLSPELLER-FEERPGAPILEG 147

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 96.4 bits (241), Expect = 1e-24
 Identities = 42/105 (40%), Positives = 58/105 (55%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  +PLFHVFGL +     L  G+ ++LM KFD    LR IE+ R+T +  VP + +A
Sbjct: 45  RTLVPVPLFHVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIA 104

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
           L +H    KFDLSSL+   SG AP+  EL+    +  P A +   
Sbjct: 105 LLEHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTG 149

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 95.7 bits (239), Expect = 5e-24
 Identities = 39/92 (42%), Positives = 51/92 (55%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            FL  LPLFH+FGL V     L+ G+  +L+  F     L+ I+++R T    VP L  A
Sbjct: 170 RFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNA 229

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           L  H   KK+D SSL+L  SG APL  E+ E 
Sbjct: 230 LLNHPEFKKYDFSSLRLCISGGAPLPVEVAER 261

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 94.5 bits (235), Expect = 2e-23
 Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 1/107 (0%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V+L  LP+FH++GL++   G L  GS I++M +FD    ++ I++ +VTH  VVPP++
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL 303

Query: 73  LALAKHGL-VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +AL K    V    L SLK V  GAAPL  + +++  + +P    IQ
Sbjct: 304 MALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQ 350

Length = 560

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 15  VFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L VLP  H F L+     G L  G  ++L      ++    IE+ +VTH  +VP L+ 
Sbjct: 182 VYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLN 241

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
              +     + DLSSL+++  G APL  EL     +      + QV
Sbjct: 242 LWLEAAEWDQADLSSLRVIQVGGAPLSPELARR-VEERLGCPLQQV 286

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 84.8 bits (210), Expect = 4e-20
 Identities = 41/107 (38%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V L  LPLFH+FGL V     L  G  ++L+    FD E  L  IEK++VT +  VP  +
Sbjct: 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFL 275

Query: 73  LALAKHGLVKKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
             L  +      DLSS L+LV SG APL  EL+E   +      +++
Sbjct: 276 RELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILE 322

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 83.5 bits (207), Expect = 9e-20
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL--EMFLRAIEKHRVTHIWVVPPLI 72
             L +LPL     +  I    L  G  ++L+ KF L     L  IEK++VT ++ VP L+
Sbjct: 174 RVLLLLPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLL 232

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
             L K    KK+DLSSL+LV SG  PL  EL+    +      ++  
Sbjct: 233 RLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNG 279

Length = 412

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 83.5 bits (206), Expect = 2e-19
 Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 5/116 (4%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L ++P FH++G+  I C  L+    +++M++F+L  FL A+    V+   +VPP+IL L 
Sbjct: 231 LGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLV 290

Query: 77  KHGLVKKFDLSSLKL--VGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC 130
           K+ +V++FDLS LKL  + + AAPL  EL+       P    +QV +   L   SC
Sbjct: 291 KNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPG---VQVQEAYGLTEHSC 343

Length = 546

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 35/91 (38%), Positives = 52/91 (57%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFHV G+       +  G+ ++L+ ++D E   RAIE++RVTH   +  +++ 
Sbjct: 127 VLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVD 186

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELME 105
           L  H     +DLSSLK+VG G A L   + E
Sbjct: 187 LLAHPRFADYDLSSLKVVGGGGAALPPAVAE 217

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 80.0 bits (197), Expect = 2e-18
 Identities = 42/99 (42%), Positives = 60/99 (60%), Gaps = 1/99 (1%)

Query: 5   DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            + T G+++ V +CVLPLFH++ L VI    L++G  I L  +FD+    R IE+ R T 
Sbjct: 231 SRATRGDVERV-ICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATV 289

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKEL 103
              VP + +ALA    ++K DLSSL  +GSG APL  E+
Sbjct: 290 FPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEV 328

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 6/103 (5%)

Query: 1   MVTMDQETAGELDY----VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA 56
           + TM Q    E ++     FL   PL H  G   +    L +G  +I++AKFD    LRA
Sbjct: 193 IATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPT--LLRGGTVIVLAKFDPAEVLRA 250

Query: 57  IEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPL 99
           IE+ R+T  ++VP +I AL  H  ++  DLSSL+ V  GA+P+
Sbjct: 251 IEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPM 293

Length = 524

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L ++P+FHV    +     L  G+  ++  +FD E  L  IE  RVT  + VP +   
Sbjct: 210 VYLVIVPMFHVHAWGLPYLA-LMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQM 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
           L K       D SSL+LV  G A L   L+ E  +
Sbjct: 269 LLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE 303

Length = 521

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.3 bits (186), Expect = 1e-16
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 15/94 (15%)

Query: 13  DYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           D V+L   PL+H     FG++ +  G       +++M KFD E  L  IE++RVTH  +V
Sbjct: 187 DSVYLSPAPLYHTAPLRFGMSALALGGT-----VVVMEKFDAEEALALIERYRVTHSQLV 241

Query: 69  PPL---ILALAKHGLVK-KFDLSSLKLVGSGAAP 98
           P +   +L L +   V+ ++D+SSL++    AAP
Sbjct: 242 PTMFVRMLKLPEE--VRARYDVSSLRVAIHAAAP 273

Length = 502

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.1 bits (184), Expect = 1e-16
 Identities = 37/96 (38%), Positives = 61/96 (63%)

Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           E + V L VLP FHV+G+  +    + +G  ++L+ KFD++M   AI+KH+VT     P 
Sbjct: 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPT 306

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           + +AL    L+K++D+SS++   SG+APL  E+ E+
Sbjct: 307 IYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEK 342

Length = 563

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP--LI 72
           V L VLPLFHV G+       +  G+ ++LM ++D E   R IE++RVTH W   P  ++
Sbjct: 233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTH-WTNIPTMVV 291

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPL 99
             LA  GL  + DLSSL+ +G G A +
Sbjct: 292 DFLASPGL-AERDLSSLRYIGGGGAAM 317

Length = 546

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.4 bits (181), Expect = 4e-16
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 17  LCVLPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L   P FHVFG    V     L +G+ I+ +  FD +   R IE  R+T +   P +  +
Sbjct: 211 LAANPFFHVFGYKAGVNAP--LMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNS 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELME 105
           L +H      DLSSL+L  +GAA +   L+E
Sbjct: 269 LLQHPDRSAEDLSSLRLAVTGAASMPVALLE 299

Length = 513

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 68.0 bits (167), Expect = 4e-14
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L   P+FH  G A +T   +  GS ++L  +FD E  L  I KH+ T + VVP +   
Sbjct: 250 TTLLPAPMFHATGWAHLTLA-MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSR 308

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKEL 103
           IL L    L  K+D SSLK++    + L  EL
Sbjct: 309 ILDLGPEVL-AKYDTSSLKIIFVSGSALSPEL 339

Length = 549

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 11/88 (12%)

Query: 17  LCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           L   PL+H     +GL     G +     ++L  +FD E  L+ IE+HR+TH+ +VP + 
Sbjct: 200 LLTGPLYHSAPNAYGLRAGRLGGV-----LVLQPRFDPEELLQLIERHRITHMHMVPTMF 254

Query: 73  LALAK--HGLVKKFDLSSLKLVGSGAAP 98
           + L K    +  K+D+SSL+ V   AAP
Sbjct: 255 IRLLKLPEEVRAKYDVSSLRHVIHAAAP 282

Length = 509

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQK-GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V+L   PL+H           + + G  +I+M  FD E +L  IE++ VTH  +VP +
Sbjct: 200 DMVYLSPAPLYHSAPQR--AVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTM 257

Query: 72  ---ILALAKHGLVKKFDLSSLKLVGSGAAP 98
              +L L +  +  K+DLSSL++    AAP
Sbjct: 258 FSRMLKLPEE-VRDKYDLSSLEVAIHAAAP 286

Length = 511

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+PLFH+ GL V     L  G  ++   KF    F   I K+RVT    VP +   L 
Sbjct: 47  LNVMPLFHIHGLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILL 106

Query: 77  KHGLVKKFD-LSSLKLVGSGAAPLGKELMEE 106
           K            L+ + S +APL   +++ 
Sbjct: 107 KTAKPNPGKPPPRLRFIRSASAPLPPAVLDR 137

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 67.3 bits (165), Expect = 6e-14
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKF-DLEMFLRAIEKHRVTHIWVVPPL 71
            F        ++GL       L  G+  +L     F   E    A+EK++VT     P  
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELME 105
           +  L K GL + +DLSSL+++GS   PL  E  E
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFE 308

Length = 528

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 64.5 bits (158), Expect = 6e-13
 Identities = 40/102 (39%), Positives = 52/102 (50%), Gaps = 8/102 (7%)

Query: 17  LCVLPLFHVFGLAVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LILA 74
           L  LPLFHV GLA++     L  G  ++L  KFD E    A+E H VTHI +VP  L   
Sbjct: 122 LLSLPLFHVSGLAIVMRS--LLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL 179

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSAT 115
           L   G      LSSL+ V  G AP+   L+E+   + +P   
Sbjct: 180 LESLG---ARWLSSLRAVLLGGAPIPPSLLEQARQRGIPLYP 218

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 63.8 bits (156), Expect = 8e-13
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPL 71
           D   L VLP    +GL+ +     + G  ++L ++F      L+ + K R+T    VP  
Sbjct: 43  DDRILAVLPFSFDYGLSQLLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTT 101

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
              L +   + + D  SL+ + +    L  + + +  +  P A +
Sbjct: 102 WAQLLRLDPLAREDFPSLRYLTNAGGALPAKTILQLRRAFPDAKL 146

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 13  DYVFLCVLPLFHVFGLAVITC----GQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
             V+LC LP  H F L+        G    G  ++L      E+    IE+H VT   +V
Sbjct: 230 QTVYLCALPAAHNFPLS---SPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALV 286

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQ 121
           PPL     +    ++ DLSSL+L+  G A L   L    A+ VP+    Q+ Q
Sbjct: 287 PPLASLWLQAAEWERADLSSLRLLQVGGARLSATL----ARRVPAVLGCQLQQ 335

Length = 542

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
           G+     L  LP+FH +GL +     +  G  ++L+   D+++ L A++KH  T +  VP
Sbjct: 259 GDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVP 318

Query: 70  PL---ILALA-KHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           PL   I   A + G+    DLS ++   SGA  L    +E 
Sbjct: 319 PLYEKIAEAAEERGV----DLSGVRNAFSGAMALPVSTVEL 355

Length = 573

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 17  LCV-LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILA 74
           LCV +PL+H FG+ +   G +  G+C++   + FD    L+A+E+ R T ++ VP + +A
Sbjct: 245 LCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIA 304

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELM 104
              H     FDLSSL+      AP   E+M
Sbjct: 305 ELDHPQRGNFDLSSLRTGIMAGAPCPIEVM 334

Length = 558

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 58.7 bits (142), Expect = 6e-11
 Identities = 32/88 (36%), Positives = 47/88 (53%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LPLFH+ G+ +     L  G  II+  KF+    L  IEKH+VT +  VP +  AL   
Sbjct: 196 LLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINC 255

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEE 106
              +  +L S++   +G AP  +ELM E
Sbjct: 256 SKFETTNLQSVRWFYNGGAPCPEELMRE 283

Length = 496

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 6   QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVT 63
           Q  AG     FL   PL H  G  +     L  G  ++L+   KFD +   R +EKHRV 
Sbjct: 51  QVAAGGAGTRFLPACPLMHGAGQWL-ALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVN 109

Query: 64  HIWVV-----PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVI 117
            + +V      PL+ AL   G   ++DLSSL+ + S  A    E+ +   + +P+  ++
Sbjct: 110 TLVIVGDAFARPLLEALEAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALV 165

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVV--- 68
                 PL H  G  A      L  G  ++L    +FD +   R IE+ +V  I +V   
Sbjct: 221 RRFPAPPLMHGAGQWAAFAA--LFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDA 278

Query: 69  --PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVI 117
              PL+ AL   G    +DLSSL  + SG A     + E   + +P+  + 
Sbjct: 279 MARPLLDALEARG---PYDLSSLFAIASGGALFSPSVKEALLELLPNVVLT 326

Length = 533

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 10  GELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIW 66
            E D + + V PL+H FG  L  + C  +  G+ ++     FD    L A+E+ R T ++
Sbjct: 238 TEEDRLCIPV-PLYHCFGMVLGNLAC--VTHGATMVYPGEGFDPLATLAAVEEERCTALY 294

Query: 67  VVPPLILALAKHGLVKKFDLSSL 89
            VP + +A   H    +FDLSSL
Sbjct: 295 GVPTMFIAELDHPDFARFDLSSL 317

Length = 559

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 17/100 (17%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL-----------MAKFDLEMFLRAIEKHRVT 63
              C LPLFHV  L V     L +G+ ++L           +A      F + +E++R+ 
Sbjct: 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIAN-----FWKIVERYRIN 310

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKEL 103
            +  VP +  AL +   V   D+SSL+    GAAPL  E+
Sbjct: 311 FLSGVPTVYAALLQVP-VDGHDISSLRYALCGAAPLPVEV 349

Length = 632

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L V PL H  G+  +   Q+ +G+  +L+   +FD       +E+HRVT+++ VP ++  
Sbjct: 210 LVVAPLSHGAGIHQLC--QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKM 267

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKE 102
           L +H  V ++D SSL+ V    AP+ + 
Sbjct: 268 LVEHPAVDRYDHSSLRYVIYAGAPMYRA 295

Length = 528

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRV 62
           + Q+T       +LC LP  H + L+     G    G C++L            IE+H+V
Sbjct: 220 LTQQT------RYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKV 273

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQ 121
           T   +VPP +    +     + DLSSLKL+  G    G +     A+ VP+    Q+ Q
Sbjct: 274 TVTALVPPAVALWMQAASKSRADLSSLKLLQVG----GAKFSAAAARRVPAVFGCQLQQ 328

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 30/100 (30%), Positives = 51/100 (51%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           + L  LPL+H   L V     L  G+  +++   D E+ LR IE  R+T  +  P + ++
Sbjct: 214 IPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWIS 273

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA 114
           L +H      DLSSL+    GA+ +  E+++E  + +P  
Sbjct: 274 LLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGL 313

Length = 523

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 18/109 (16%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  +P+FH+ GL+ I    +  G  ++L+ KFD E   + ++   VT I VV  ++    
Sbjct: 186 LAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTML---- 240

Query: 77  KHGLVKKFDL----SSLK--LVGSGAAPLGKELMEEC-AKNVPSATVIQ 118
              L+++       SS +  L+G G AP  K L+E+C  K +P   V Q
Sbjct: 241 -QRLLERLGEGTYPSSFRCMLLGGGPAP--KPLLEQCKEKGIP---VYQ 283

Length = 483

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPL HV GL       L  G+ +  + +FD +         R+T    VP +   
Sbjct: 131 VLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR 190

Query: 75  LAKH---GLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           L +H            +L+L  SG+A L   ++E 
Sbjct: 191 LLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLER 225

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 16/109 (14%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-M-----AKFDLEMFLRAIEKHRVT 63
           GE+D   L   PLF +FG A    G     + +I  M     A  D      AIE++ VT
Sbjct: 215 GEID---LPTFPLFALFGPA---LG----MTSVIPDMDPTRPATVDPAKLFAAIERYGVT 264

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP 112
           +++  P L+  L ++G      L SL+ V S  AP+   ++E     +P
Sbjct: 265 NLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLP 313

Length = 552

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMAKFDLEMFLRAIE 58
            V     T  +   V L   PL H+ G    +     L  G+ ++L  ++D    L  I 
Sbjct: 125 YVERLGLTPDD---VVLMPSPLAHITGFLYGLELP--LLLGATVVLQDRWDPARALELIR 179

Query: 59  KHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
           +H VT      P +  L         DL SL++   G AP+ +EL    A
Sbjct: 180 EHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAA 229

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L  LP   VFG + +  G L  G+ ++    FD     RA+ +HRVTH +    ++
Sbjct: 222 GAVLLAALPFCGVFGFSTLL-GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEML 280

Query: 73  LALAKHGLVKKFDLSSLKLVGSGA-APLGKELMEE-CAKNVPSA 114
             +      +  D  S +L G  + AP   EL     A+ VP  
Sbjct: 281 RRILDTAGERA-DFPSARLFGFASFAPALGELAALARARGVPLT 323

Length = 540

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 23  FHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           + V GL V        G+ ++L        D  +      +  VT        + A  K 
Sbjct: 321 WLVSGLLV--------GATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKA 372

Query: 79  GLV--KKFDLSSLKLVGSGAAPL 99
           GLV  +  DLS+L+ +GS  +PL
Sbjct: 373 GLVPGETHDLSALRTIGSTGSPL 395

Length = 655

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA------KFDLEMFLRAIEKHRVTHIW 66
             V L  LPLFHV G  V     L +G+ ++L           +  F + +E++RVT + 
Sbjct: 43  GDVLLNGLPLFHVGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLS 102

Query: 67  VVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKEL 103
            VP ++ AL +  L    D+SSL+   +GAAPL  E+
Sbjct: 103 AVPTVLAALLQVPLGDA-DISSLRYALTGAAPLPVEV 138

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 9   AGELDYVFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            G  D VFL  LP F +    FGL       L  G+ ++L+A++D   F+ A+E++RVT 
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLF----PLFSGATLVLLARWDAVAFMAAVERYRVTR 302

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVG 93
             ++    + L  H    ++DLSSL+ V 
Sbjct: 303 TVMLVDNAVELMDHPRFAEYDLSSLRQVR 331

Length = 567

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKE 102
           F   IEKH+VT  +  P  I AL + G   VKK DLSSL+L+GS   P+  E
Sbjct: 322 FWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPE 373

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V    +PLFH+ G+  +  G L  G+  ++  +  FD    L  +E  +VT I++VP   
Sbjct: 218 VGFVGVPLFHIAGIGSMLPG-LLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQW 276

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
            A+      +  DL +L+++  GAAP    L+ + A   P A ++  
Sbjct: 277 QAVCAEQQARPRDL-ALRVLSWGAAPASDTLLRQMAATFPEAQILAA 322

Length = 542

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 26/80 (32%), Positives = 38/80 (47%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L V PL+HV    +     L  G  + +  +FD E  L AIE+HR+T  W+ P ++  +
Sbjct: 193 LLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRV 252

Query: 76  AKHGLVKKFDLSSLKLVGSG 95
                  +FDL SL     G
Sbjct: 253 LTVPDRDRFDLDSLAWCIGG 272

Length = 497

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKG-SCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
             D V L  LP FH FGL V     L +G   +      D     + + KHR T +   P
Sbjct: 821 RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTP 880

Query: 70  PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
             +    ++  +     +SL+LV +GA  L  E+ + 
Sbjct: 881 TFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADA 917

Length = 1146

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  LPL+H+ GL+++    ++  +  I+     L   L  I   RVTHI +VP  +  L 
Sbjct: 156 LLSLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVPTQLNRLL 212

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVP 112
             G        +L+ +  G + +   L+EE     +P
Sbjct: 213 DEGGHN----ENLRKILLGGSAIPAPLIEEAQQYGLP 245

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFH+   A      L  G+ ++L+ +F    F   + KH  T   ++  +   
Sbjct: 124 VLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAI 183

Query: 75  LAKH 78
           L K 
Sbjct: 184 LMKQ 187

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 13  DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V+L   PL H+ GL+  +    L  G+C +L+ KFD +  L+AI++H VT +  VP +
Sbjct: 213 DDVYLHTAPLCHIGGLSSALA--MLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAM 270

Query: 72  ILALAKHGLVKKFDLS--SLKLVGSGAAPLGKELMEECAKNVPSA 114
           +  L              S++ + +G   L   L+ +  K  P+A
Sbjct: 271 MADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNA 315

Length = 563

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
               L  LPL HVF   +     L  G+ +        E  L  + + R T  + VP + 
Sbjct: 129 GDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRPTVFFAVPRVW 186

Query: 72  ------ILA-LAKHGLVKK--FD----LSSLKLVGSGAAPLGKELME 105
                 I A +A  G +K+  F        L+   SG APL  E++E
Sbjct: 187 EKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLE 233

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 40  SCIILMAKFDLEMFLRAIEKHRVTHIW-VVPPLILALAKHG--LVKKFDLSSLKLVGSGA 96
           + +I   +F  E + R +E ++VT +W   P  I  L   G  LVKK+DLSSL+ + S  
Sbjct: 274 TNVIDGGRFSPERWYRILEDYKVT-VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVG 332

Query: 97  APLGKE 102
            PL  E
Sbjct: 333 EPLNPE 338

Length = 570

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGS 94
           +EK++VT  +  P  I  L + G    KK DLSSL+L+GS
Sbjct: 315 VEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGS 354

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 45.1 bits (108), Expect = 3e-06
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 39  GSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSG 95
           G+ ++L       D E     + +HR+T + +VP L+ AL      +   L SL+LV  G
Sbjct: 159 GATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL--EPAALPSLRLVIVG 216

Query: 96  AAPLGKELMEECAKNVPSATVI 117
              L  EL+    +  P A ++
Sbjct: 217 GEALPAELVRRWRELFPGARLV 238

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 44.2 bits (104), Expect = 6e-06
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 13/118 (11%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQK-GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           ++    P++H   L    C  +   G  ++L  +FD +  L  +E++R+T   +VP + +
Sbjct: 197 IYYSSAPIYHAAPLR--WCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFV 254

Query: 74  ALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES 129
            L K    +  ++D+SSL+ V   AAP        C  +V  A +  +    + YY S
Sbjct: 255 RLLKLDADVRTRYDVSSLRAVIHAAAP--------CPVDVKHAMIDWLGPIVYEYYSS 304

Length = 501

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D ++  R   K  +T        + AL K G+   +  DLSSL+ + S  +PL  E  + 
Sbjct: 316 DPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDW 375

Query: 107 CAKNV 111
              +V
Sbjct: 376 VYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H+F L V     ++ G   +L+    D+  F++ ++K+  T I  V  L  AL  +
Sbjct: 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNN 316

Query: 79  GLVKKFDLSSLKL-VGSGAA 97
              ++ D SSLKL VG G A
Sbjct: 317 EEFQELDFSSLKLSVGGGMA 336

Length = 560

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 44.0 bits (105), Expect = 7e-06
 Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGS 94
           I+KH+VT  +  P  I AL K G    KK+DLSSL+L+GS
Sbjct: 335 IDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGS 374

Length = 637

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
            F+C LPL+H+F L V     ++ G   IL+    D+  F++ ++K++V     V  L  
Sbjct: 254 NFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYN 313

Query: 74  ALAKHGLVKKFDLSSLKLV-GSGAA 97
           AL  +    K D S L +  G G A
Sbjct: 314 ALLNNPDFDKLDFSKLIVANGGGMA 338

Length = 557

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAP 98
             R +E+H+VTH+ + P LI AL  HG   V+  DLSSL+++GS   P
Sbjct: 185 LWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEP 232

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 31/123 (25%)

Query: 15  VFLCVLPLFH------VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH       + +  +       G   + + K D       IEKH+VTH+   
Sbjct: 210 VYLWTLPMFHCNGWCFPWAITAV-------GGTHVCLRKVDAPAIYDLIEKHKVTHLCGA 262

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQ---FE-- 123
           P ++  LA      K  L     V +  AP             P   VI+ ++   FE  
Sbjct: 263 PTVLNMLANAPEADKLPLPRPVRVMTAGAP-------------PPPAVIKKMEELGFEVT 309

Query: 124 HLY 126
           H+Y
Sbjct: 310 HVY 312

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI 65
           V    LPL+H   L V     L  G+ + L  KF    F   + ++  T  
Sbjct: 124 VLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAF 174

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V L  LPLFH FGL V     L  G  ++      D +     I  ++ T +   P  + 
Sbjct: 188 VLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLR 247

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
             A++      D SSL+LV +GA  L +   E 
Sbjct: 248 GYARN--AHPEDFSSLRLVVAGAEKLPEATREL 278

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LP  + FG+ V+             M +FD E     + ++ VT+ ++ P  +  + + 
Sbjct: 150 LLPALY-FGVPVVAYR----------MQRFDPERAFALMRRYGVTNAFLPPTALKMMRRV 198

Query: 79  G-LVKKFDLSSLKLVGSGAAPLGKELME 105
           G    ++DL  L+ V SG   LG+EL+E
Sbjct: 199 GSERARYDL-RLRAVASGGESLGEELLE 225

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 44/136 (32%)

Query: 17  LCVLPLF----HVFGLAVITCGQLQKGSCIILMA----------KFDLEMFLRAIEKHRV 62
           LC+LPL     ++ G+       L  G+ +IL+             D   F+ A+ + + 
Sbjct: 157 LCLLPLATLLENIAGVYA----PLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQP 212

Query: 63  THIWVVPPLILAL---AKHGLVKKFDLSSLKLVGSGAAPLGKELME-------------- 105
             + +VP L++AL    + G +      SL+ V  G A +   L++              
Sbjct: 213 HSLILVPQLLMALVAAVEQGPLP---PESLRFVAVGGARVSPSLLQRARALGLPVYEGYG 269

Query: 106 --ECAK----NVPSAT 115
             ECA     N P A 
Sbjct: 270 LSECASVVSLNTPGAD 285

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKG---SCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70
             + V P+FH +G +     QL      +C I+   +FD E  L  I++HR T + VVP 
Sbjct: 239 PTVIVAPMFHAWGFS-----QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPV 293

Query: 71  L---ILALAKHGLVKKFDLSSLKLVGSGAAPL 99
           +   I+ L       ++   SL+   +  + +
Sbjct: 294 MFDRIMDLPAEVR-NRYSGRSLRFAAASGSRM 324

Length = 537

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 12/102 (11%)

Query: 15  VFLCVLPLFHVFG-----LAVITCGQLQKGSCIILMAKF-DLEMFLRAIEKHRVTHIWVV 68
             L V+P+FHV        A +       G+ ++L  ++ D    L  IE+ +VT    V
Sbjct: 207 TVLPVVPMFHVNAWGLPYAATMV------GAKLVLPGRYLDPASLLDLIEEEKVTVSAGV 260

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
           P + L L  +      DLSSL+ V  G + L + L+E+  + 
Sbjct: 261 PTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEER 302

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 27/115 (23%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP------ 69
            L  LPL H+    ++  G L  G+ +  +    L+ F   +++ R T  + VP      
Sbjct: 181 LLSYLPLAHIAERVIVEGGSLYSGAEVFFV--ESLDTFAADLQRARPTVFFSVPRLWTKF 238

Query: 70  -------------------PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELME 105
                              P++ +L K  ++K   L   +L GSGAAP+   L+ 
Sbjct: 239 QQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIA 293

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP+FH  GL V T   L  G+ +I + KFD +  L  +   R T +  VP   
Sbjct: 197 DDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFY 254

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPL 99
             L +   + +   + ++L  SG+APL
Sbjct: 255 TRLLQEPRLTREAAAHMRLFISGSAPL 281

Length = 504

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAK---HG-LVKKFDLSSLKLV 92
           + R IE++ V  ++  P  I A+ K    G  +KK+DLSSL+ +
Sbjct: 307 YWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRAL 350

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 27/96 (28%)

Query: 20  LPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMF-------LRAIEKHRVTHIWVVPP 70
           LPL+H  GL   ++    L  G  ++LM+      F       L AI ++R T     P 
Sbjct: 196 LPLYHDMGLIGGLLQP--LYAGFPVVLMSPLA---FLRRPLRWLEAISRYRATVSGA-PN 249

Query: 71  LILALAKHGLVKKF--------DLSSLKLVGSGAAP 98
               L     V++         DLSS ++  +GA P
Sbjct: 250 FAYDLC----VRRVRDEQLAGLDLSSWRVAFNGAEP 281

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI 65
           V  C LPL+H  G  V     L  G+ + L  KF    F   + ++R T  
Sbjct: 242 VLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAF 292

Length = 600

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 42  IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL 99
           ++   +FD E +   +E+ +VT  +  P  +  L + G  L  ++DLSSL+ + S   PL
Sbjct: 160 VVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPL 219

Query: 100 GKELME 105
             E++ 
Sbjct: 220 NPEVVV 225

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D VF+   PL   FGL  +    L+ G+  +L+ +    + L+AI++HR T ++  P   
Sbjct: 189 DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAY 248

Query: 73  LALAKHGLVKKFDLSSL-KLVGSG 95
            A+     VK FD+SSL K V +G
Sbjct: 249 RAML--IKVKAFDISSLRKCVSAG 270

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H++   A   C  +     +++    D+  F++ + K R + +  +  L +
Sbjct: 260 VMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFV 319

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELME 105
           AL  H   K  D S+LKL  SG   L K   E
Sbjct: 320 ALMDHPGFKDLDFSALKLTNSGGTALVKATAE 351

Length = 562

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 28/102 (27%), Positives = 48/102 (47%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +FD    L+ IE+ RVT ++  P  + A
Sbjct: 197 VVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDA 256

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
           LA         L SL+ V    A +   ++E   +++P   V
Sbjct: 257 LAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKV 298

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
                G+ + +    +FD E  L  +E++ VT  +  PP     L +  L   +D S L+
Sbjct: 143 APWLLGAAVFVYHGRRFDAERTLELLERYGVT-TFCAPPTAYRMLLQQDL-SSYDFSHLR 200

Query: 91  LVGSGAAPLGKELME 105
            V S   PL  E+++
Sbjct: 201 HVVSAGEPLNPEVID 215

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
             L  LPL H+F  A      L     + ++ K D    L  +++ R T +  VP
Sbjct: 235 RVLSFLPLAHIFERAFEGGLAL--YGGVTVLFKEDPRTLLEDLKEVRPTVMIGVP 287

Length = 613

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI-- 72
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP +   
Sbjct: 198 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 257

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAP 98
           LA        +      +LV  G+A 
Sbjct: 258 LADYLESTGHRLKT-LRRLVVGGSAA 282

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 55  RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL 99
           R +EK++V  ++  P  I  L K    L++K DLSSL+ +     PL
Sbjct: 321 RIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPL 367

Length = 629

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LIL 73
           +LC LP  H + ++     G    G  ++L       +    IEKH+V    +VPP + L
Sbjct: 226 YLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSL 285

Query: 74  ALAKHGLVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPS 113
            L        +  L+SLKL+  G A L + L    A+ +P+
Sbjct: 286 WLQAIAEGGSRAQLASLKLLQVGGARLSETL----ARRIPA 322

Length = 536

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 39  GSCIIL----MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGS 94
           G+ +++      + D  +    I +H VT + + P L+  LA         L+SL+LV  
Sbjct: 186 GATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLAAAL---PPALASLRLVIL 242

Query: 95  GAAPLGKELMEECAKNVPSATVIQV 119
           G   L   L++      P A +I +
Sbjct: 243 GGEALTPALVDRWRARGPGARLINL 267

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 19/110 (17%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWV 67
           VFL  +PL H  GL          G    LM      +F+R          +HR T I  
Sbjct: 149 VFLSWMPLTHDMGLIGFHLTPTALGINQYLMPT---RLFIRRPLLWLDKASQHRAT-ILS 204

Query: 68  VP----PLILALAKHGLVKKFDLSSLKLVGSGAAP----LGKELMEECAK 109
            P      +L   K   +  +DLSS++L+ +GA P    L +E +E+ A 
Sbjct: 205 SPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAP 254

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G+  +L+  F  +  L  +E+ R T +    P I  L      +  DLS+L+    G   
Sbjct: 254 GARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTT 313

Query: 99  LGKELMEEC 107
           + K++  EC
Sbjct: 314 IPKKVAREC 322

Length = 547

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCII---LMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           L VLPL   +G   +T       + ++   L+ + D+   L+A+EKH +T +  VPPL  
Sbjct: 208 LAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPR-DV---LKALEKHGITGLAAVPPLWA 263

Query: 74  ALAK 77
            LA+
Sbjct: 264 QLAQ 267

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	99.88
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.87
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	99.86
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.82
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.81
PRK07788	549	acyl-CoA synthetase; Validated	99.78
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.78
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.77
PLN02246	537	4-coumarate--CoA ligase	99.77
PLN02654	666	acetate-CoA ligase	99.76
PLN02860	563	o-succinylbenzoate-CoA ligase	99.76
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.76
PLN02574	560	4-coumarate--CoA ligase-like	99.75
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.75
PLN03051	499	acyl-activating enzyme; Provisional	99.74
PRK07529	632	AMP-binding domain protein; Validated	99.74
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.74
PRK06839	496	acyl-CoA synthetase; Validated	99.74
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.74
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.73
PRK06145	497	acyl-CoA synthetase; Validated	99.73
PRK08316	523	acyl-CoA synthetase; Validated	99.73
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.73
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.73
PRK13382	537	acyl-CoA synthetase; Provisional	99.73
PRK07868	994	acyl-CoA synthetase; Validated	99.72
PRK08315	559	AMP-binding domain protein; Validated	99.72
PTZ00342	746	acyl-CoA synthetase; Provisional	99.72
PRK04319	570	acetyl-CoA synthetase; Provisional	99.71
PRK12583	558	acyl-CoA synthetase; Provisional	99.71
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.71
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.71
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.71
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.71
PLN03052	728	acetate--CoA ligase; Provisional	99.71
PRK00174	637	acetyl-CoA synthetase; Provisional	99.7
PRK13383	516	acyl-CoA synthetase; Provisional	99.7
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.7
PLN02736	651	long-chain acyl-CoA synthetase	99.7
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.7
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.69
PRK07787	471	acyl-CoA synthetase; Validated	99.69
PRK06188	524	acyl-CoA synthetase; Validated	99.69
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.69
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.69
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.68
PRK07638	487	acyl-CoA synthetase; Validated	99.68
PLN02330	546	4-coumarate--CoA ligase-like 1	99.68
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.68
PRK13391	511	acyl-CoA synthetase; Provisional	99.68
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.68
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.68
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.67
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.67
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.67
PRK05852	534	acyl-CoA synthetase; Validated	99.67
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.67
PRK06060	705	acyl-CoA synthetase; Validated	99.67
PRK07514	504	malonyl-CoA synthase; Validated	99.67
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.67
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.65
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.65
PRK12467	3956	peptide synthase; Provisional	99.65
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.65
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.65
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.65
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.65
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	99.65
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.65
PRK13390	501	acyl-CoA synthetase; Provisional	99.64
PRK08308	414	acyl-CoA synthetase; Validated	99.64
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.64
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.64
PLN02614	666	long-chain acyl-CoA synthetase	99.63
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.63
PRK09088	488	acyl-CoA synthetase; Validated	99.63
PRK12467	3956	peptide synthase; Provisional	99.63
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.63
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.63
PRK12316	5163	peptide synthase; Provisional	99.62
PRK07470	528	acyl-CoA synthetase; Validated	99.62
PRK12316	5163	peptide synthase; Provisional	99.62
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.62
PRK12582	624	acyl-CoA synthetase; Provisional	99.62
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.62
PRK07798	533	acyl-CoA synthetase; Validated	99.62
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.62
PRK05857	540	acyl-CoA synthetase; Validated	99.62
PRK09274	552	peptide synthase; Provisional	99.62
PLN03102	579	acyl-activating enzyme; Provisional	99.61
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.6
PRK06164	540	acyl-CoA synthetase; Validated	99.6
PRK07867	529	acyl-CoA synthetase; Validated	99.59
PRK05691	4334	peptide synthase; Validated	99.59
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.59
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.58
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.58
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.57
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.57
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.57
PRK13388	540	acyl-CoA synthetase; Provisional	99.57
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.57
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.57
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.55
PRK05691	4334	peptide synthase; Validated	99.55
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.54
PLN02479	567	acetate-CoA ligase	99.54
PRK06178	567	acyl-CoA synthetase; Validated	99.52
PRK08162	545	acyl-CoA synthetase; Validated	99.51
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.51
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.51
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.5
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.5
PTZ00216	700	acyl-CoA synthetase; Provisional	99.45
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.44
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.42
PRK05850	578	acyl-CoA synthetase; Validated	99.41
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	99.41
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.37
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.36
PRK09192	579	acyl-CoA synthetase; Validated	99.35
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.01
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	98.99
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	98.89
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.89
PTZ00297	1452	pantothenate kinase; Provisional	98.42
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	94.82
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	87.31
TIGR02370	197	pyl_corrinoid methyltransferase cognate corrinoid	80.61

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.88  E-value=1.7e-21  Score=149.26  Aligned_cols=131  Identities=40%  Similarity=0.574  Sum_probs=112.9

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG   93 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~   93 (149)
                      |+.++.+|++|++|+...+...+..|++++..++++++.+++.+++|++|++.++|+++..+++.+....++++++|.+.
T Consensus       226 ~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~  305 (537)
T KOG1176|consen  226 DVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVL  305 (537)
T ss_pred             ceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEE
Confidence            99999999999999966555577777777777889999999999999999999999999999999877778999999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccccCC-CCCceeEE
Q 032003           94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLK-RFDEFCIF  144 (149)
Q Consensus        94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~-~~~~~~~~  144 (149)
                      +||+++++++.+++++++|...+.++||+||+++..+.+...+ ...+++..
T Consensus       306 ~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~  357 (537)
T KOG1176|consen  306 SGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGR  357 (537)
T ss_pred             ecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCc
Confidence            9999999999999999999889999999999995554433333 35555543

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.87  E-value=2.7e-21  Score=147.61  Aligned_cols=122  Identities=25%  Similarity=0.278  Sum_probs=110.4

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--C-CHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~-~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+.+.+ |++++..++.|+.|.++.++++|.+|+++++.+.  + +++++++.++++++|.++..|+.++.+.+.....+
T Consensus       207 ~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~  286 (528)
T COG0365         207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEP  286 (528)
T ss_pred             hhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCccc
Confidence            345556 9999999999999998889999999999999863  2 49999999999999999999999999998876567


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .++++||.+.+.|||++++.++++.+.++ +++.+.||+||++....
T Consensus       287 ~dlssLr~~~SaGEPLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~  332 (528)
T COG0365         287 YDLSSLRVLGSAGEPLNPEAFEWFYSALG-VWILDIYGQTETGMGFI  332 (528)
T ss_pred             ccchhheeeeccCCCCCHHHHHHHHHHhC-CCEeccccccccCcccc
Confidence            89999999999999999999999999998 99999999999994433

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=99.86  E-value=5.7e-21  Score=141.22  Aligned_cols=126  Identities=22%  Similarity=0.290  Sum_probs=114.0

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+|+.+ +|++++.|++|++|+....++++..|++++++ +.++++..++.++++++|.++++|+++..+++.+.....+
T Consensus       269 r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~  348 (596)
T KOG1177|consen  269 RAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD  348 (596)
T ss_pred             HhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc
Confidence            357777 79999999999999889999999999999997 5799999999999999999999999999999999888899


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDY  133 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~  133 (149)
                      ++++|.+..||+++++++.+.+.+...-..+...||+||++.+.+...
T Consensus       349 ~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~  396 (596)
T KOG1177|consen  349 LSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSL  396 (596)
T ss_pred             hhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeec
Confidence            999999999999999999999988665456888999999996665443

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.82  E-value=5.8e-19  Score=136.59  Aligned_cols=122  Identities=34%  Similarity=0.404  Sum_probs=108.8

Q ss_pred             CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003           11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus        11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++ |++++++|++|++|+...++.++..|+++++.+  +++++.+++.+.++++|++.++|+++..+++++.....++.
T Consensus       211 ~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~  290 (534)
T COG0318         211 LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLS  290 (534)
T ss_pred             CCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccc
Confidence            566 889999999999999777777899999999997  69999999999999999999999999999998776666666


Q ss_pred             C-ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccccc
Q 032003           88 S-LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCND  132 (149)
Q Consensus        88 ~-lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~  132 (149)
                      + +|.+++||+++++++++++++.++..++.++||+||++..++..
T Consensus       291 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~  336 (534)
T COG0318         291 SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTIN  336 (534)
T ss_pred             cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecC
Confidence            5 99999999999999999999999856799999999998655433

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.81  E-value=8.3e-19  Score=135.76  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=107.7

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      ++.++ |++++.+|++|++|+...++.++..|+++++.+ .++++.+++.++++++|.+.++|+++..+++.+.....++
T Consensus       219 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  298 (539)
T PRK06334        219 FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCL  298 (539)
T ss_pred             cCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccccc
Confidence            44555 999999999999998666789999999998875 5799999999999999999999999999987665455678


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||+++++++.+++++.+++.++++.||+||++..++
T Consensus       299 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  342 (539)
T PRK06334        299 PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVIT  342 (539)
T ss_pred             ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEE
Confidence            89999999999999999999999997789999999999985544

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.78  E-value=4.1e-18  Score=131.96  Aligned_cols=120  Identities=24%  Similarity=0.318  Sum_probs=105.8

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD   85 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~   85 (149)
                      +++.+ |+++...|++|++|+ ..++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++....  ...+
T Consensus       243 ~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~  321 (549)
T PRK07788        243 VPFRAGETTLLPAPMFHATGW-AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYD  321 (549)
T ss_pred             CCCCcCCeEEEccchHHHHHH-HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCC
Confidence            34555 899999999999998 5677899999999999889999999999999999999999999999876543  4456


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.+.+||+++++++.+++++.++ .++++.||+||++..+.
T Consensus       322 ~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~  365 (549)
T PRK07788        322 TSSLKIIFVSGSALSPELATRALEAFG-PVLYNLYGSTEVAFATI  365 (549)
T ss_pred             CCceeEEEEeCCCCCHHHHHHHHHHhC-ccceeccCcchhchhhc
Confidence            789999999999999999999999987 78999999999885544

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.78  E-value=8.3e-18  Score=129.99  Aligned_cols=121  Identities=26%  Similarity=0.402  Sum_probs=108.7

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      .+++. |++++.+|++|..|+...++.++..|+++++.+.++++.+++.++++++|++.++|+++..+...+.....+++
T Consensus       226 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~  305 (546)
T PRK08314        226 SNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLS  305 (546)
T ss_pred             hCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCch
Confidence            34555 99999999999999978888999999999999989999999999999999999999999999877655556778


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+.+||+++++++.+++.+.++ .++++.||+||++....
T Consensus       306 ~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  347 (546)
T PRK08314        306 SLRYIGGGGAAMPEAVAERLKELTG-LDYVEGYGLTETMAQTH  347 (546)
T ss_pred             hhheeeeccccCCHHHHHHHHHHcC-CcEEeccccccccccee
Confidence            9999999999999999999999887 89999999999985443

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.77  E-value=1.5e-17  Score=127.47  Aligned_cols=123  Identities=27%  Similarity=0.341  Sum_probs=109.4

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .++..+ |++++..|++|.+|+...++.++..|+++++.+..+++.+++.++++++|.+.++|+++..+.+.......++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  280 (513)
T PRK07656        201 YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDL  280 (513)
T ss_pred             hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCc
Confidence            345556 8999999999999987778999999999999888899999999999999999999999999998876555678


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||+++++++.+++++.++..++++.||+||++++.+
T Consensus       281 ~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  324 (513)
T PRK07656        281 SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTT  324 (513)
T ss_pred             cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCcee
Confidence            89999999999999999999999998328999999999975554

>PLN02246 4-coumarate--CoA ligase

Probab=99.77  E-value=1.7e-17  Score=128.19  Aligned_cols=121  Identities=39%  Similarity=0.602  Sum_probs=108.9

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++.+ |+++...|++|++++...++.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.+.....+++
T Consensus       219 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  298 (537)
T PLN02246        219 LYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLS  298 (537)
T ss_pred             cCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCcc
Confidence            44556 99999999999999877778899999999999989999999999999999999999999999887655556678


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      ++|.+++||+++++++.+++++.+++.++.+.||+||++.++
T Consensus       299 ~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  340 (537)
T PLN02246        299 SIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVL  340 (537)
T ss_pred             ceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCccc
Confidence            999999999999999999999999778899999999998654

>PLN02654 acetate-CoA ligase

Probab=99.76  E-value=1.5e-17  Score=131.70  Aligned_cols=123  Identities=16%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-   81 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-   81 (149)
                      .+++++ |++++..|++|+.|..+.++.+|..|+++++.++    ++++.+++.++++++|++.++|++++.+.+.... 
T Consensus       311 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  390 (666)
T PLN02654        311 AFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY  390 (666)
T ss_pred             hcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc
Confidence            456667 9999999999999987888899999999999863    5899999999999999999999999999876532 


Q ss_pred             -CcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeecccccccccc
Q 032003           82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESC  130 (149)
Q Consensus        82 -~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~  130 (149)
                       ...+++++|.+.++|+++++++++++.+.+|.  +++.+.||+||+++..+
T Consensus       391 ~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~  442 (666)
T PLN02654        391 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI  442 (666)
T ss_pred             cccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeee
Confidence             34568899999999999999999999999874  67999999999985443

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.76  E-value=9e-18  Score=130.51  Aligned_cols=119  Identities=26%  Similarity=0.392  Sum_probs=105.3

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD   85 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~   85 (149)
                      +++.+ |+++...|++|+.|+ ...+.++..|+++++.++++++.+++.++++++|.+.++|+++..+++....  ...+
T Consensus       208 ~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~  286 (563)
T PLN02860        208 VGYGEDDVYLHTAPLCHIGGL-SSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKV  286 (563)
T ss_pred             cCCCCCCEEEEecCchhhccH-HHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhcccc
Confidence            45666 899999999999998 5678999999999999999999999999999999999999999999875432  2245


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      ++++|.+++||+++++++.+++++.+++.++++.||+||++..
T Consensus       287 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  329 (563)
T PLN02860        287 FPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSS  329 (563)
T ss_pred             ccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcc
Confidence            7789999999999999999999999977899999999998743

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.76  E-value=3.8e-17  Score=126.57  Aligned_cols=121  Identities=18%  Similarity=0.146  Sum_probs=108.8

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++.+ |++++..|++|..|+...++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+.......+++
T Consensus       233 ~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~  312 (547)
T PRK13295        233 LGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVS  312 (547)
T ss_pred             hCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcc
Confidence            34555 89999999999999878889999999999999888999999999999999999999999999887655556788


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+.+||+++++++.+++++.++ .++++.||+||++..++
T Consensus       313 ~l~~~~~~G~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~  354 (547)
T PRK13295        313 SLRTFLCAGAPIPGALVERARAALG-AKIVSAWGMTENGAVTL  354 (547)
T ss_pred             cceEEEEecCCCCHHHHHHHHHHhC-CCeEEeccCCCCCCeee
Confidence            9999999999999999999999886 89999999999986554

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.75  E-value=3.1e-17  Score=127.49  Aligned_cols=117  Identities=34%  Similarity=0.587  Sum_probs=104.9

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-CcCCCCCceEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-KKFDLSSLKLV   92 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-~~~~l~~lr~~   92 (149)
                      ++++..+|++|++|+...++.++..|+++++.++++++.+++.++++++|.+.++|+++..+.+.+.. ...+++++|.+
T Consensus       245 ~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~  324 (560)
T PLN02574        245 NVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQV  324 (560)
T ss_pred             cEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEE
Confidence            78899999999999977777888999999999989999999999999999999999999999887543 34568899999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+||+++++++.+++.+.+++.++.+.||+||++.+.+
T Consensus       325 ~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~  362 (560)
T PLN02574        325 SCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGT  362 (560)
T ss_pred             EEecccCCHHHHHHHHHHCCCCcEEecccccccCceee
Confidence            99999999999999999987789999999999985443

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.75  E-value=1e-17  Score=125.49  Aligned_cols=117  Identities=32%  Similarity=0.408  Sum_probs=100.4

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCC---HHHHHHHHHhcCceEEEecHHHHHHHHhCCCCC----cCCC
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KFDL   86 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~----~~~l   86 (149)
                      |++++.+|++|.+|+...++.++..|+++++.+..+   ++.+++.++++++|.+.++|+++..+++.++..    ..++
T Consensus       197 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l  276 (417)
T PF00501_consen  197 DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDL  276 (417)
T ss_dssp             TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTG
T ss_pred             ceEEeeccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccccccccc
Confidence            599999999999999788999999999999998654   578899999999999999999999998743222    3478


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||+++++++.+++++.++..++++.||+||++.+++
T Consensus       277 ~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  320 (417)
T PF00501_consen  277 SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIAT  320 (417)
T ss_dssp             TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEE
T ss_pred             ccccccccccccCChhhccccccccccccceecccccccceeee
Confidence            88999999999999999999999988448999999999997766

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.74  E-value=2.8e-17  Score=126.16  Aligned_cols=118  Identities=16%  Similarity=0.083  Sum_probs=100.6

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--CCcC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKF   84 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~   84 (149)
                      +++++ |++++.+|++|+.|+ ..++.++..|+++++.++ ++++.+++.++++++|++.++|+++..+++.+.  ....
T Consensus       155 ~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~  233 (499)
T PLN03051        155 MDIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGL  233 (499)
T ss_pred             cCCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccC
Confidence            45566 999999999999997 678899999999999874 789999999999999999999999999987653  2345


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCC-CCcEEeeeccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVVQFEHLYY  127 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~i~~~YG~tE~~~  127 (149)
                      +++++|.+.+||++++++..+++++..+ +.++.+.||+||++.
T Consensus       234 ~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~  277 (499)
T PLN03051        234 DWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELAS  277 (499)
T ss_pred             CchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccc
Confidence            6889999999999999999988776332 267999999999863

>PRK07529 AMP-binding domain protein; Validated

Probab=99.74  E-value=6.4e-17  Score=127.42  Aligned_cols=120  Identities=26%  Similarity=0.393  Sum_probs=103.8

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--C-C---HHHHHHHHHhcCceEEEecHHHHHHHHhCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-D---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~-~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~   81 (149)
                      +++++ |++++.+|++|+.|....++.++..|+++++.+.  + +   .+.+++.++++++|.+.++|+++..+++.+. 
T Consensus       249 ~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-  327 (632)
T PRK07529        249 LGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-  327 (632)
T ss_pred             cCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-
Confidence            34455 8999999999999987788999999999999753  2 2   4688999999999999999999999988753 


Q ss_pred             CcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        82 ~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ...+++++|.+++||+++++++.+++++.++ +++++.||+||++..+.
T Consensus       328 ~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g-~~l~~~YG~TE~~~~~~  375 (632)
T PRK07529        328 DGHDISSLRYALCGAAPLPVEVFRRFEAATG-VRIVEGYGLTEATCVSS  375 (632)
T ss_pred             cCCCccceEEEEEcCCCCCHHHHHHHHHHhC-CcEeeeecccccCcccc
Confidence            3457889999999999999999999999886 89999999999986554

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.74  E-value=7.5e-17  Score=124.66  Aligned_cols=121  Identities=16%  Similarity=0.070  Sum_probs=107.0

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      ++++. |++++.+|++|..|+...++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.........+++
T Consensus       231 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~  310 (538)
T TIGR03208       231 LELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVP  310 (538)
T ss_pred             cCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCC
Confidence            35555 89999999999999878889999999999999889999999999999999999999999998765443445678


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+.+||+++++++.+++.+.++ +++++.||+||++.+..
T Consensus       311 ~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  352 (538)
T TIGR03208       311 SLFTFLCAGAPIPGILVERAWELLG-ALIVSAWGMTENGAVTV  352 (538)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHcC-CeEEeeeccCcCCCccc
Confidence            9999999999999999999998887 89999999999986554

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.74  E-value=8.7e-17  Score=122.83  Aligned_cols=118  Identities=28%  Similarity=0.312  Sum_probs=105.9

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~   88 (149)
                      +.+. |+++..+|++|.+|+....+.++..|+++++.+.++++.+++.++++++|.+.++|++++.+.+.......++++
T Consensus       186 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  265 (496)
T PRK06839        186 DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQS  265 (496)
T ss_pred             CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcc
Confidence            4455 899999999999998777788999999999988899999999999999999999999999999876655667889


Q ss_pred             ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      +|.+++||+++++++.+++++. + +++.+.||+||++...
T Consensus       266 lr~~~~gG~~~~~~~~~~~~~~-g-~~~~~~YG~tE~~~~~  304 (496)
T PRK06839        266 VRWFYNGGAPCPEELMREFIDR-G-FLFGQGFGMTETSPTV  304 (496)
T ss_pred             cceEEECCCCCCHHHHHHHHHh-C-CeeEeeccCCCCCcce
Confidence            9999999999999999999886 4 8999999999998543

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.74  E-value=4.8e-17  Score=128.00  Aligned_cols=119  Identities=21%  Similarity=0.229  Sum_probs=104.6

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--   80 (149)
                      .+++++ |++++..|++|+.|+.+.++.++..|+++++.++    ++++.+++.++++++|++.++|++++.+.+.+.  
T Consensus       268 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  347 (628)
T TIGR02316       268 IFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW  347 (628)
T ss_pred             hcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc
Confidence            356666 9999999999999987788999999999999863    579999999999999999999999999877543  


Q ss_pred             CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      ....+++++|.+.+||+++++++.+++++.++ .++++.||+||++.
T Consensus       348 ~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~~yG~TE~~~  393 (628)
T TIGR02316       348 LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVIDNYWQTETGW  393 (628)
T ss_pred             cccCCccceeEEEEecCCCCHHHHHHHHHHhC-CCEEecccccccCc
Confidence            23457889999999999999999999998887 88999999999984

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.73  E-value=7.8e-17  Score=133.62  Aligned_cols=121  Identities=21%  Similarity=0.274  Sum_probs=107.9

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      ++.++ |++++.+|++|..|+....+.++..|+++++.+ .++++.+++.++++++|++..+|++++.+.+++...+.++
T Consensus       818 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  897 (1146)
T PRK08633        818 FNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMF  897 (1146)
T ss_pred             cCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccC
Confidence            44555 999999999999999776889999999999876 5799999999999999999999999999988766666778


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||+++++++.+++++.++ .++++.||+||++..++
T Consensus       898 ~~lr~~~~gg~~~~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~  940 (1146)
T PRK08633        898 ASLRLVVAGAEKLKPEVADAFEEKFG-IRILEGYGATETSPVAS  940 (1146)
T ss_pred             CCeeeEEEcCCcCCHHHHHHHHHHhC-CCeecccccccCcceEE
Confidence            99999999999999999999999987 89999999999985543

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.73  E-value=1.4e-16  Score=121.89  Aligned_cols=121  Identities=24%  Similarity=0.325  Sum_probs=108.0

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      ++... |+++...|++|.+++....+.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++.......+++
T Consensus       185 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~  264 (497)
T PRK06145        185 LGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLD  264 (497)
T ss_pred             hCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccc
Confidence            34555 89999999999999876677889999999999989999999999999999999999999999887655556778


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      ++|.+.+||+++++++.+++.+.+++.++++.||+||++...
T Consensus       265 ~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  306 (497)
T PRK06145        265 SLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGD  306 (497)
T ss_pred             cceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcc
Confidence            999999999999999999999999778899999999998543

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.73  E-value=1.4e-16  Score=122.31  Aligned_cols=122  Identities=25%  Similarity=0.306  Sum_probs=108.6

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      .++.+ |+++..+|++|..|+...++.++..|+++++.+..+++.+++.++++++|.+.++|+++..+.+.......+++
T Consensus       207 ~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  286 (523)
T PRK08316        207 GDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLS  286 (523)
T ss_pred             hCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcc
Confidence            34555 89999999999999866667788999999999888999999999999999999999999999987665666788


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+..||++++.++.+++++.+++.++++.||+||++.++.
T Consensus       287 ~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  329 (523)
T PRK08316        287 SLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLAT  329 (523)
T ss_pred             cceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCcccc
Confidence            9999999999999999999999987789999999999986554

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.73  E-value=1.1e-16  Score=125.74  Aligned_cols=123  Identities=28%  Similarity=0.320  Sum_probs=106.1

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-   81 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-   81 (149)
                      .+++++ |++++..|++|+.|..+.++.++..|+++++.++    ++++.+++.++++++|++.++|++++.+.+.... 
T Consensus       272 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  351 (625)
T TIGR02188       272 VFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW  351 (625)
T ss_pred             ccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc
Confidence            346666 9999999999999987778999999999999753    4899999999999999999999999999876432 


Q ss_pred             -CcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeecccccccccc
Q 032003           82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESC  130 (149)
Q Consensus        82 -~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~  130 (149)
                       ...+++++|.+.+||+++++++++++++.++.  +++++.||+||+++..+
T Consensus       352 ~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~  403 (625)
T TIGR02188       352 VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMI  403 (625)
T ss_pred             cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCcee
Confidence             33568899999999999999999999998863  78999999999985543

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.73  E-value=6.3e-17  Score=129.06  Aligned_cols=120  Identities=18%  Similarity=0.257  Sum_probs=103.9

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+++++ |++++.+|++|++|+...++.++..|+++++.+. +++..+.+.++++++|.+.++|+++..+.+..  ...+
T Consensus       400 ~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~  477 (718)
T PRK08043        400 IADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYD  477 (718)
T ss_pred             hhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Cccc
Confidence            345666 9999999999999987778899999999998874 57888999999999999999999998886642  3356


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.+.+||+++++++.+++++.++ +++++.||+||++...+
T Consensus       478 ~~~lr~i~~gg~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~  521 (718)
T PRK08043        478 FARLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVS  521 (718)
T ss_pred             ccceEEEEEeCccCCHHHHHHHHHHcC-CCeecccCcccccceEE
Confidence            789999999999999999999999887 89999999999975443

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.73  E-value=1.4e-16  Score=123.25  Aligned_cols=119  Identities=16%  Similarity=0.199  Sum_probs=104.0

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDL   86 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l   86 (149)
                      .++. |+++...|++|.+|+ ...+.++..|+++++.++++++.+++.++++++|.+.++|+++..+++....  ...++
T Consensus       233 ~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~  311 (537)
T PRK13382        233 PWRAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSG  311 (537)
T ss_pred             CCCCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCc
Confidence            3445 889999999999998 6788999999999999889999999999999999999999999999875422  23356


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||++++++++++|.+.++ .++++.||+||++..++
T Consensus       312 ~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~  354 (537)
T PRK13382        312 RSLRFAAASGSRMRPDVVIAFMDQFG-DVIYNNYNATEAGMIAT  354 (537)
T ss_pred             cceeEEEEcCCCCCHHHHHHHHHHcC-CcEEecccccccCccee
Confidence            68999999999999999999999997 78999999999986554

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.72  E-value=1.9e-16  Score=130.08  Aligned_cols=120  Identities=19%  Similarity=0.197  Sum_probs=100.3

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++++ |++++.+|++|++|+...++..+..|+++++.++++++.+++.++++++|++.++|++++.+++.+.....+++
T Consensus       641 ~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~  720 (994)
T PRK07868        641 AALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNH  720 (994)
T ss_pred             cCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCC
Confidence            35555 99999999999999966666777777777777889999999999999999999999999999886554445677


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+. | +.+++++.+++.+.+++.++++.||+||++.+..
T Consensus       721 slr~~~-g-~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~  761 (994)
T PRK07868        721 PVRLFI-G-SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA  761 (994)
T ss_pred             ceEEEe-c-CCCCHHHHHHHHHHhCchheeeeeeccccccccc
Confidence            899876 3 3499999999999997788999999999875443

>PRK08315 AMP-binding domain protein; Validated

Probab=99.72  E-value=2.8e-16  Score=121.80  Aligned_cols=123  Identities=23%  Similarity=0.304  Sum_probs=108.1

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      ..++++ |+++...|++|..|+...++.++..|+++++. ..+++..+++.++++++|.+.++|+++..++..+.....+
T Consensus       234 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~  313 (559)
T PRK08315        234 AMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFD  313 (559)
T ss_pred             hcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCC
Confidence            345666 89999999999999988889999999999854 5789999999999999999999999999888776555567


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.++.||+++++++.+++.+.++..++++.||+||++.+++
T Consensus       314 ~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~  358 (559)
T PRK08315        314 LSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVST  358 (559)
T ss_pred             chhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEccccccccee
Confidence            889999999999999999999999988566999999999986554

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.72  E-value=1e-16  Score=128.08  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=96.7

Q ss_pred             CCcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhC--------CCCCc
Q 032003           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLVKK   83 (149)
Q Consensus        12 ~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~--------~~~~~   83 (149)
                      .+|+++..+|++|+++.. ..+.++..|+++++.++ +++.+++.++++++|++.++|.++..+.+.        +....
T Consensus       346 ~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~  423 (746)
T PTZ00342        346 NPKTHLSYLPISHIYERV-IAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKR  423 (746)
T ss_pred             CCCeEEEeCcHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHH
Confidence            348999999999999984 56778999999998865 899999999999999999999999998642        11000


Q ss_pred             ----------------------------------CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           84 ----------------------------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        84 ----------------------------------~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                                                        ...+++|.+.+||+++++++.+++++.++ +++.++||+||+++..
T Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gYGlTEt~~~~  502 (746)
T PTZ00342        424 FLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGYGLTETTGPI  502 (746)
T ss_pred             HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEeeccCccccee
Confidence                                              00257999999999999999999998887 8999999999997543


Q ss_pred             c
Q 032003          130 C  130 (149)
Q Consensus       130 ~  130 (149)
                      +
T Consensus       503 ~  503 (746)
T PTZ00342        503 F  503 (746)
T ss_pred             e
Confidence            3

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.71  E-value=2.6e-16  Score=122.51  Aligned_cols=120  Identities=23%  Similarity=0.215  Sum_probs=105.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--CCcC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKF   84 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~   84 (149)
                      +++++ |++++..|++|..|....++.++..|+++++.+ .++++.+++.++++++|++.++|++++.+.+...  ....
T Consensus       241 ~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  320 (570)
T PRK04319        241 LDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKY  320 (570)
T ss_pred             cCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccC
Confidence            45556 899999999999998788899999999999875 6899999999999999999999999999987542  2335


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      +++++|.+.+||+++++++.+++++.++ .++++.||+||++...
T Consensus       321 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~i~~~YG~tE~~~~~  364 (570)
T PRK04319        321 DLSSLRHILSVGEPLNPEVVRWGMKVFG-LPIHDNWWMTETGGIM  364 (570)
T ss_pred             CcccceEEEEcccCCCHHHHHHHHHHhC-CCeEeceeecccCCEE
Confidence            6789999999999999999999999887 8899999999998543

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.71  E-value=2.4e-16  Score=122.07  Aligned_cols=123  Identities=27%  Similarity=0.382  Sum_probs=108.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      +++.+ |+++...|++|..|....++.++..|+++++.. .++++.+++.++++++|++.++|+++..++........++
T Consensus       237 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~  316 (558)
T PRK12583        237 LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDL  316 (558)
T ss_pred             hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCc
Confidence            45666 899999999999999888899999999998764 6789999999999999999999999988887665555678


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  131 (149)
                      +++|.+++||+++++++.+++.+.++..++.+.||+||++.+++.
T Consensus       317 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  361 (558)
T PRK12583        317 SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQ  361 (558)
T ss_pred             hhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceec
Confidence            899999999999999999999999886679999999999866553

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.71  E-value=2.2e-16  Score=122.87  Aligned_cols=117  Identities=25%  Similarity=0.310  Sum_probs=105.7

Q ss_pred             CcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (149)
Q Consensus        13 ~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~   92 (149)
                      +|++++.+|++|.+|+...+..++..|+++++.+..+++.+++.++++++|.+.++|++++.+.+.+.....+++++|.+
T Consensus       262 ~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i  341 (573)
T PRK05605        262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNA  341 (573)
T ss_pred             CcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEE
Confidence            38999999999999987777788999999999988899999999999999999999999999988766556678899999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++||+++++++.+++.+.++ .++++.||+||+++.++
T Consensus       342 ~~gg~~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~  378 (573)
T PRK05605        342 FSGAMALPVSTVELWEKLTG-GLLVEGYGLTETSPIIV  378 (573)
T ss_pred             EECCCcCCHHHHHHHHHHhC-CCeecccccchhchhhh
Confidence            99999999999999988876 88999999999985544

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.71  E-value=3.7e-16  Score=119.85  Aligned_cols=120  Identities=20%  Similarity=0.289  Sum_probs=105.2

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++.. |++++.+|++|..|+ ..++.++..|+++++.+.++++.+.+.++++++|.+.++|+++..+.+... ...+++
T Consensus       197 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~  274 (515)
T TIGR03098       197 LENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAP  274 (515)
T ss_pred             hCCCcccEEEEECchhhHhHH-HHHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCcc
Confidence            34555 899999999999998 567899999999999988999999999999999999999999999986532 234677


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+.+||+++++++.+++++.+++.++++.||+||++....
T Consensus       275 ~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  317 (515)
T TIGR03098       275 SLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTY  317 (515)
T ss_pred             ceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEe
Confidence            8999999999999999999999987688999999999875443

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.71  E-value=2.9e-16  Score=120.39  Aligned_cols=121  Identities=27%  Similarity=0.319  Sum_probs=106.9

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+++.+ |+++...|++|..++... +.++..|+++++.+..+++.+++.++++++|.+.++|+++..+.+.......++
T Consensus       202 ~~~~~~~d~~~~~~~~~~~~~~~~~-~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  280 (521)
T PRK06187        202 WLKLSRDDVYLVIVPMFHVHAWGLP-YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDF  280 (521)
T ss_pred             hhCCCCCCEEEEeCCchHHhhHHHH-HHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCc
Confidence            345666 899999999999998444 459999999999988899999999999999999999999999998876556678


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+..||+++++++.+++.+.++ +++++.||+||++....
T Consensus       281 ~~l~~v~~~Ge~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~  323 (521)
T PRK06187        281 SSLRLVIYGGAALPPALLREFKEKFG-IDLVQGYGMTETSPVVS  323 (521)
T ss_pred             chhhEEEEcCcCCCHHHHHHHHHHhC-cchheeeccCccCcccc
Confidence            89999999999999999999999885 89999999999985444

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.71  E-value=3.2e-16  Score=120.91  Aligned_cols=117  Identities=25%  Similarity=0.360  Sum_probs=104.0

Q ss_pred             cCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+++. |++++.+|++|.+++.. ..+.++..|+++++.+++++..+++.++++++|++.++|+++..+.+.......++
T Consensus       219 ~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  298 (527)
T TIGR02275       219 CWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDL  298 (527)
T ss_pred             cCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCc
Confidence            44555 89999999999999854 47888999999999888899999999999999999999999999887665555678


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY  126 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~  126 (149)
                      +++|.+.+||+++++++.+++.+.++ .++++.||+||++
T Consensus       299 ~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~~YG~tE~~  337 (527)
T TIGR02275       299 SSLKLLQVGGAKFSEAAARRVPAVFG-CQLQQVFGMAEGL  337 (527)
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHHhC-CeEEeeeccCccC
Confidence            89999999999999999999999887 8999999999965

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.71  E-value=2.6e-16  Score=125.71  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=103.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      +++++ |++++..|++|+.|. +.++.+|..|+++++.++ +++..+++.++++++|++..+|++++.+.+.......++
T Consensus       392 ~~l~~~d~~~~~~~l~w~~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dl  470 (728)
T PLN03052        392 LDIRKGDIVCWPTNLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDW  470 (728)
T ss_pred             cCCCCCcEEEECCCcHHHhHH-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCCh
Confidence            35566 999999999999998 678899999999999974 567789999999999999999999999987654456688


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      +++|.+.+||++++++...++.+.++..++.+.||+||+++
T Consensus       471 ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~  511 (728)
T PLN03052        471 SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGG  511 (728)
T ss_pred             hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCc
Confidence            99999999999999999988888776467999999999874

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.70  E-value=4.4e-16  Score=122.70  Aligned_cols=122  Identities=30%  Similarity=0.357  Sum_probs=105.2

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--   81 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--   81 (149)
                      +++++ |++++..|++|+.+..+.++.++..|+++++.++    ++++.+++.++++++|.+.++|++++.+++....  
T Consensus       282 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  361 (637)
T PRK00174        282 FDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP  361 (637)
T ss_pred             cCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc
Confidence            45666 9999999999999987788999999999999753    4799999999999999999999999999876432  


Q ss_pred             CcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeecccccccccc
Q 032003           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESC  130 (149)
Q Consensus        82 ~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~  130 (149)
                      ...+++++|.+.+||+++++++.+++.+.++.  +++++.||+||++...+
T Consensus       362 ~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  412 (637)
T PRK00174        362 KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMI  412 (637)
T ss_pred             ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceE
Confidence            23467899999999999999999999988763  78999999999985443

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.70  E-value=4.5e-16  Score=119.82  Aligned_cols=119  Identities=17%  Similarity=0.167  Sum_probs=103.7

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDL   86 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l   86 (149)
                      ++.+ |+++..+|++|.+|+ ...+.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+....  ...++
T Consensus       213 ~~~~~d~~~~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  291 (516)
T PRK13383        213 RLRTGSRISVAMPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPL  291 (516)
T ss_pred             ccCCCCeEEEecCCcchhhH-HHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCC
Confidence            4555 899999999999998 5678889999999998889999999999999999999999999999865432  12357


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+++||+++++++.+++.+.++ .++++.||+||++..+.
T Consensus       292 ~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~  334 (516)
T PRK13383        292 PQLRVVMSSGDRLDPTLGQRFMDTYG-DILYNGYGSTEVGIGAL  334 (516)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHcC-chhhhccccccccccee
Confidence            78999999999999999999999997 88999999999985443

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.70  E-value=3.4e-16  Score=122.92  Aligned_cols=117  Identities=18%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCH---HHHHHHHHhcCceEEEecHHHHHHHHhCC----CCCcCC
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDL---EMFLRAIEKHRVTHIWVVPPLILALAKHG----LVKKFD   85 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~---~~~~~~l~~~~~t~~~~~P~~~~~l~~~~----~~~~~~   85 (149)
                      +++++.+|++|++|+...++.++..|+++++.+ .+++   ..+++.++++++|.+.++|+++..+++..    .....+
T Consensus       253 ~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~  332 (614)
T PRK08180        253 PVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRF  332 (614)
T ss_pred             cEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhh
Confidence            899999999999998777889999999999976 3444   56788899999999999999999887632    222345


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHh----CC-CCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKN----VP-SATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~----~~-~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.+.+||+++++++.+++++.    ++ ++++++.||+||++.+++
T Consensus       333 ~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~  382 (614)
T PRK08180        333 FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSAT  382 (614)
T ss_pred             ccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceE
Confidence            7899999999999999999998874    33 267999999999985544

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.70  E-value=4e-16  Score=123.30  Aligned_cols=119  Identities=19%  Similarity=0.180  Sum_probs=98.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC-------
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-------   80 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-------   80 (149)
                      +++.+ |++++.+|++|+++. ..++.++..|+++++.+. +++.+++.++++++|++.++|+++..+.+...       
T Consensus       257 ~~~~~~d~~l~~lPl~h~~~~-~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~  334 (651)
T PLN02736        257 TKFYPSDVHISYLPLAHIYER-VNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESG  334 (651)
T ss_pred             cCCCCCCEEEEeCCHHHHHHH-HHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhccc
Confidence            34555 999999999999999 567889999999988764 88999999999999999999999988754210       


Q ss_pred             ----------------------CCc------------CCC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccc
Q 032003           81 ----------------------VKK------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHL  125 (149)
Q Consensus        81 ----------------------~~~------------~~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~  125 (149)
                                            ...            ..+ +++|.+.+||+++++++.+++++.++ ++++++||+||+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~  413 (651)
T PLN02736        335 GLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTET  413 (651)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHh
Confidence                                  000            011 47999999999999999999998887 889999999999


Q ss_pred             ccccc
Q 032003          126 YYESC  130 (149)
Q Consensus       126 ~~~~~  130 (149)
                      ++..+
T Consensus       414 ~~~~~  418 (651)
T PLN02736        414 SCVIS  418 (651)
T ss_pred             chhee
Confidence            75443

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.70  E-value=4.8e-16  Score=120.31  Aligned_cols=120  Identities=21%  Similarity=0.234  Sum_probs=104.6

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+++.+ |+++...|++|.+++ ...+.++..|+++++.+ .++++.+++.++++++|.+.++|+++..+.+.......+
T Consensus       213 ~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~  291 (539)
T PRK07008        213 AMGLSARDAVLPVVPMFHVNAW-GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLR  291 (539)
T ss_pred             ccCCCCCceEEecCchHHhhhH-HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCC
Confidence            345555 899999999999887 44578889999999874 679999999999999999999999999998876555567


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      ++++|.+.++|+++++++.+++++.++ .++++.||+||++..+
T Consensus       292 ~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~  334 (539)
T PRK07008        292 FSTLRRTVIGGSACPPAMIRTFEDEYG-VEVIHAWGMTEMSPLG  334 (539)
T ss_pred             cccceEEEEcCCCCCHHHHHHHHHHhC-Cceecccccccccccc
Confidence            889999999999999999999998886 8999999999998543

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.69  E-value=3.7e-16  Score=122.97  Aligned_cols=119  Identities=24%  Similarity=0.314  Sum_probs=103.7

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC----CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--   80 (149)
                      .+++++ |++++..|++|+.|..+.++.++..|+++++.+    .++++.+++.++++++|.+.++|++++.+.+...  
T Consensus       269 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  348 (629)
T PRK10524        269 IFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL  348 (629)
T ss_pred             hcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc
Confidence            345666 999999999999987778899999999999876    3579999999999999999999999999877542  


Q ss_pred             CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      ....+++++|.+.+||+++++++.+++++.++ +++++.||+||++.
T Consensus       349 ~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~  394 (629)
T PRK10524        349 LRKHDLSSLRALFLAGEPLDEPTASWISEALG-VPVIDNYWQTETGW  394 (629)
T ss_pred             ccccChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEeccccccccc
Confidence            13456789999999999999999999999887 89999999999973

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.69  E-value=4.8e-16  Score=118.45  Aligned_cols=119  Identities=21%  Similarity=0.213  Sum_probs=104.7

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      ++..+ |+++..+|++|..|+...++.++..|+++++.+.++++.+++.++ +++|++.++|+++..+.+... ...+++
T Consensus       164 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~  241 (471)
T PRK07787        164 WQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALR  241 (471)
T ss_pred             cCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-cccccc
Confidence            34555 899999999999999888999999999999998899999999999 999999999999999987543 234578


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+..||+++++++.+++.+.++ .++++.||+||++....
T Consensus       242 ~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  283 (471)
T PRK07787        242 GARLLVSGSAALPVPVFDRLAALTG-HRPVERYGMTETLITLS  283 (471)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHcC-CCeecccCccccCccee
Confidence            8999999999999999999999886 88999999999985443

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.69  E-value=4e-16  Score=120.17  Aligned_cols=117  Identities=32%  Similarity=0.361  Sum_probs=104.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++.. |+++...|++|..|+ . ++.++..|+++++.+..+++.+++.++++++|++.++|+++..+++.+.....+++
T Consensus       204 ~~~~~~~~~l~~~pl~~~~g~-~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~  281 (524)
T PRK06188        204 WEWPADPRFLMCTPLSHAGGA-F-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLS  281 (524)
T ss_pred             cCCCcCcEEEEecCchhhhhH-H-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCc
Confidence            44555 899999999999987 3 57889999999999999999999999999999999999999999987765666788


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      ++|.+.+||++++++..+++.+.++ ..+.+.||+||++..
T Consensus       282 ~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~  321 (524)
T PRK06188        282 SLETVYYGASPMSPVRLAEAIERFG-PIFAQYYGQTEAPMV  321 (524)
T ss_pred             ceeEEEEcCCCCCHHHHHHHHHHhC-chhhheeCccccCCc
Confidence            9999999999999999999888887 789999999999643

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.69  E-value=1.2e-15  Score=118.13  Aligned_cols=119  Identities=21%  Similarity=0.249  Sum_probs=103.7

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~   88 (149)
                      +.++ |++++..|++|.+|+...++.++..|+++++.+.++++.+++.++++++|.+..+|+.+..+++.......++++
T Consensus       224 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~  303 (547)
T PRK06087        224 NLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSA  303 (547)
T ss_pred             CCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCC
Confidence            4555 999999999999998788889999999999999899999999999999999998888877777765445567789


Q ss_pred             ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +|.+++||+++++++.+++.+. + +++++.||+||++....
T Consensus       304 lr~i~~gG~~~~~~~~~~~~~~-~-~~l~~~YG~TE~~~~~~  343 (547)
T PRK06087        304 LRFFLCGGTTIPKKVARECQQR-G-IKLLSVYGSTESSPHAV  343 (547)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHc-C-CcEEEEecccccCCccc
Confidence            9999999999999999988765 4 89999999999985544

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.69  E-value=4.5e-16  Score=123.00  Aligned_cols=118  Identities=20%  Similarity=0.182  Sum_probs=100.3

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--CC----HHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FD----LEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~~----~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--   80 (149)
                      ..++ |++++..|++|+.+. ..++.++..|+++++.++  ..    ++.+++.++++++|.+.++|++++.+++...  
T Consensus       292 ~~~~~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  370 (647)
T PTZ00237        292 EKDIPTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA  370 (647)
T ss_pred             CCCCCcEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence            3444 899999999999876 567899999999999764  12    7899999999999999999999999987432  


Q ss_pred             ---CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           81 ---VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        81 ---~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                         ....+++++|.+.+||+++++++.+++++.++ +++.+.||+||++...
T Consensus       371 ~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~~yG~TE~~~~~  421 (647)
T PTZ00237        371 TIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSRGYGQTEIGITY  421 (647)
T ss_pred             cccccccCcchheEEEecCccCCHHHHHHHHHhcC-CCEEeeechHHhChhh
Confidence               13356889999999999999999999999887 8999999999998543

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.68  E-value=1.3e-15  Score=116.11  Aligned_cols=116  Identities=26%  Similarity=0.345  Sum_probs=100.9

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++++ |+++..+|++|++|+ ..++.++..|+++++.+..+++.+++.++++++|++.++|+++..+....... ....
T Consensus       177 ~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~  254 (483)
T PRK03640        177 LGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPS  254 (483)
T ss_pred             cCCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCC
Confidence            45566 999999999999998 56789999999999999899999999999999999999999999998653322 3346


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      ++|.+..||+++++++.+++++.  ++++++.||+||++..
T Consensus       255 ~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~  293 (483)
T PRK03640        255 SFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQ  293 (483)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCccccc
Confidence            89999999999999999998875  4899999999998743

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.68  E-value=1.3e-15  Score=116.49  Aligned_cols=118  Identities=19%  Similarity=0.180  Sum_probs=102.2

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      ++.++ |+++...|++|..++ ..++.++..|+++++.+.++++.+++.++++++|++.++|+++..+.+...   . ..
T Consensus       179 ~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~  253 (487)
T PRK07638        179 FHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IE  253 (487)
T ss_pred             cCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CC
Confidence            34555 899999999999987 778899999999999998999999999999999999999999999987632   2 33


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  131 (149)
                      +.+.++++|++++++..+++++.+|+.++++.||+||++..+..
T Consensus       254 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  297 (487)
T PRK07638        254 NKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTAL  297 (487)
T ss_pred             ceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEe
Confidence            45567789999999999999999987899999999999865543

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.68  E-value=1.1e-15  Score=118.50  Aligned_cols=116  Identities=32%  Similarity=0.606  Sum_probs=102.4

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC--CceE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS--SLKL   91 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~--~lr~   91 (149)
                      ++.+...|++|.+|+...++.++..|+++++.++++++.+++.++++++|.+.++|+++..+.+.+.....+++  ++|.
T Consensus       228 ~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~  307 (546)
T PLN02330        228 VVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQA  307 (546)
T ss_pred             eEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeee
Confidence            57889999999999866778899999999999999999999999999999999999999999886554444444  4789


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           92 VGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        92 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      +.+||+++++++++++++.+++.++++.||+||++...
T Consensus       308 i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  345 (546)
T PLN02330        308 IMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCIT  345 (546)
T ss_pred             EEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccce
Confidence            99999999999999999999769999999999987543

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.68  E-value=1.1e-15  Score=114.00  Aligned_cols=119  Identities=23%  Similarity=0.183  Sum_probs=104.7

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC---CHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++.. |++++..|++|..++ ..++.++..|+++++.++.   .++.+.+.++++++|.+.++|++++.+.+...   
T Consensus       155 ~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---  230 (408)
T TIGR01733       155 RYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---  230 (408)
T ss_pred             hcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---
Confidence            344555 899999999999998 7789999999999998754   37899999999999999999999999988754   


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++++|.+.+||+++++++.+++.+.+++..+++.||+||++..+.
T Consensus       231 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~  277 (408)
T TIGR01733       231 PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWST  277 (408)
T ss_pred             hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEE
Confidence            56789999999999999999999999997788999999999986553

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.68  E-value=1.4e-15  Score=116.84  Aligned_cols=120  Identities=26%  Similarity=0.281  Sum_probs=103.5

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD   85 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~   85 (149)
                      +++.+ +++++..|++|.+++ ...+.++..|+++++.+.++++.+++.++++++|++.++|+++..+.+....  ...+
T Consensus       195 ~~~~~~~~~l~~~p~~h~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  273 (511)
T PRK13391        195 WGFRSDMVYLSPAPLYHSAPQ-RAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYD  273 (511)
T ss_pred             cCCCCCCeEEEcCCHHHHHHH-HHHHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCC
Confidence            34455 899999999999998 5567889999999999889999999999999999999999999988765322  2345


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.+++||+++++++.+++++.++ .++++.||+||++.++.
T Consensus       274 ~~~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~  317 (511)
T PRK13391        274 LSSLEVAIHAAAPCPPQVKEQMIDWWG-PIIHEYYAATEGLGFTA  317 (511)
T ss_pred             ccceeEEEEccCCCCHHHHHHHHHHcC-CceeeeeccccccceEE
Confidence            789999999999999999999999887 88999999999986543

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.68  E-value=1.3e-15  Score=117.02  Aligned_cols=122  Identities=18%  Similarity=0.225  Sum_probs=105.2

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+++++ |+++...|++|..++...+..++..|+++++.+ .++++.+++.++++++|.+.++|+++..+.+........
T Consensus       197 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~  276 (508)
T TIGR02262       197 TLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAED  276 (508)
T ss_pred             hcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccc
Confidence            345666 899999999999998777788899999999876 468999999999999999999999998887765444445


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ..++|.+.+||+++++++.+.|++.++ +++++.||+||++...+
T Consensus       277 ~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~  320 (508)
T TIGR02262       277 QVRLRLCTSAGEALPAEVGQRWQARFG-VDIVDGIGSTEMLHIFL  320 (508)
T ss_pred             cccceeEEEcCCCCCHHHHHHHHHHhC-CchhhCccccccCceee
Confidence            678999999999999999999999887 89999999999985443

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.68  E-value=8.9e-16  Score=119.29  Aligned_cols=116  Identities=31%  Similarity=0.495  Sum_probs=103.3

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG   93 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~   93 (149)
                      +++++..|++|.+|....++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+.+.....+++++|.+.
T Consensus       250 ~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~  329 (563)
T PRK06710        250 EVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACI  329 (563)
T ss_pred             ceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhhee
Confidence            68899999999999866677889999999999888999999999999999999999999999876654555678999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +||+++++++.+++++.++ .++++.||+||++..+.
T Consensus       330 ~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  365 (563)
T PRK06710        330 SGSAPLPVEVQEKFETVTG-GKLVEGYGLTESSPVTH  365 (563)
T ss_pred             eCCCcCCHHHHHHHHHhhC-CCEecccccccCccccc
Confidence            9999999999999998886 88999999999986543

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.67  E-value=1.4e-15  Score=116.81  Aligned_cols=121  Identities=26%  Similarity=0.272  Sum_probs=103.5

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~   84 (149)
                      .+++.+ ++++...|++|..+..+. +.++..|+++++.+..+++.+++.++++++|.+.++|+++..+++.+..  ...
T Consensus       190 ~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  268 (509)
T PRK12406        190 IYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY  268 (509)
T ss_pred             hcCCCCCceEEEEeCCcccchHHHH-HHHHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccC
Confidence            345566 899999999999887444 5678889999998888999999999999999999999999999875432  334


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++++|.++.||+++++++.+++.+.++ .++++.||+||++.++.
T Consensus       269 ~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  313 (509)
T PRK12406        269 DVSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYEYYGSTESGAVTF  313 (509)
T ss_pred             CCCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEeeccccccCceEe
Confidence            6789999999999999999999999887 88999999999986554

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.67  E-value=2.1e-15  Score=116.71  Aligned_cols=116  Identities=34%  Similarity=0.484  Sum_probs=103.5

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG   93 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~   93 (149)
                      +++++..|++|..++...++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++.+.....+++++|.++
T Consensus       239 ~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~  318 (541)
T TIGR03205       239 ERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIG  318 (541)
T ss_pred             ceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEE
Confidence            78999999999999877788899999999988888999999999999999999999999999876544455678999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .||+++++++.+++.+.++ .++++.||+||++...+
T Consensus       319 ~gg~~~~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~  354 (541)
T TIGR03205       319 SGGAPLPVEVANFFERKTG-LKLKSGWGMTETCSPGT  354 (541)
T ss_pred             EccccCCHHHHHHHHHHhC-CCeecccccccCCcccc
Confidence            9999999999999988876 89999999999985443

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.67  E-value=1.4e-15  Score=117.83  Aligned_cols=119  Identities=19%  Similarity=0.253  Sum_probs=102.6

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+++++ |+++...|++|.+++ ...+.++..|+++++.. .++++.+++.++++++|.+.++|+++..+.+.......+
T Consensus       214 ~~~~~~~d~~~~~~p~~h~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~  292 (542)
T PRK06018        214 ALGTSAADTMLPVVPLFHANSW-GIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLK  292 (542)
T ss_pred             hcCCCCCCEEEEecCHHHHhhh-HHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCC
Confidence            345556 899999999999998 44567889999998875 678999999999999999999999999998766545556


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      ++++|.+.+||+++++++.+++++ ++ .++++.||+||++...
T Consensus       293 ~~~lr~~~~~G~~l~~~~~~~~~~-~~-~~~~~~YG~tE~~~~~  334 (542)
T PRK06018        293 LPHLKMVVCGGSAMPRSMIKAFED-MG-VEVRHAWGMTEMSPLG  334 (542)
T ss_pred             cccceEEEEcCCCCCHHHHHHHHH-hC-CCeEeeecccccCccc
Confidence            789999999999999999999998 65 8999999999998543

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.67  E-value=1.3e-15  Score=117.74  Aligned_cols=121  Identities=21%  Similarity=0.269  Sum_probs=104.8

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCC--c
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK--K   83 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--~   83 (149)
                      +++.+ |++++..|++|..|+...++.++..|+++++.+  .+++..+++.++++++|.+.++|+++..+.+.....  .
T Consensus       212 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  291 (534)
T PRK05852        212 YRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSG  291 (534)
T ss_pred             hCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccccc
Confidence            34555 899999999999999888899999999998865  478999999999999999999999999998765432  2


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++++|.+.++|+++++++.+++.+.++ .++++.||+||++...+
T Consensus       292 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~  337 (534)
T PRK05852        292 RKPAALRFIRSCSAPLTAETAQALQTEFA-APVVCAFGMTEATHQVT  337 (534)
T ss_pred             ccCCCeeEEEECCCCCCHHHHHHHHHHhC-CChhhccCccccchhhh
Confidence            45678999999999999999999999987 88999999999985444

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.67  E-value=2.4e-15  Score=116.43  Aligned_cols=115  Identities=25%  Similarity=0.397  Sum_probs=101.4

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~   91 (149)
                      ++++...|++|.+|+ ..++.++..|+++++.+  .++++.+++.++++++|.+.++|+++..+.........+ .++|.
T Consensus       217 ~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~  294 (542)
T PRK07786        217 DVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRV  294 (542)
T ss_pred             ceEEEecchHHHHHH-HHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEE
Confidence            899999999999998 67889999999999865  579999999999999999999999999998765433333 36999


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           92 VGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        92 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +.+||+++++++++++++.+++.++++.||+||++.+.+
T Consensus       295 i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~  333 (542)
T PRK07786        295 LSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTC  333 (542)
T ss_pred             EEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceE
Confidence            999999999999999999997799999999999986544

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.67  E-value=1.7e-15  Score=120.73  Aligned_cols=119  Identities=13%  Similarity=0.100  Sum_probs=104.0

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      +++.+ |+++...|++|..++...++.++..|+++++.+ .++++.+.+.++++++|++.++|+++..+++...  ..++
T Consensus       182 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~  259 (705)
T PRK06060        182 LRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSF  259 (705)
T ss_pred             hCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccc
Confidence            45556 899999999999988677889999999999986 5789999999999999999999999999987542  3457


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      +++|.+++||+++++++.+++.+.+++.++++.||+||++...
T Consensus       260 ~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  302 (705)
T PRK06060        260 RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTF  302 (705)
T ss_pred             cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceE
Confidence            8899999999999999999999999778999999999997543

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.67  E-value=1.9e-15  Score=115.72  Aligned_cols=119  Identities=24%  Similarity=0.330  Sum_probs=105.5

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++++ |++++..|++|..|+...++.++..|+++++.+..+++.+++.++  ++|.+..+|+++..++..+......++
T Consensus       192 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~  269 (504)
T PRK07514        192 WRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAA  269 (504)
T ss_pred             hCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCccccc
Confidence            45555 899999999999998777889999999999999899999999994  699999999999999887665566788


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+..||+++++++.+++++.++ .++++.||+||++....
T Consensus       270 ~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  311 (504)
T PRK07514        270 HMRLFISGSAPLLAETHREFQERTG-HAILERYGMTETNMNTS  311 (504)
T ss_pred             ceeeEEecCCCCCHHHHHHHHHHhC-Ccceeeccccccccccc
Confidence            9999999999999999999999887 88999999999986544

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.67  E-value=9.7e-16  Score=115.65  Aligned_cols=125  Identities=18%  Similarity=0.130  Sum_probs=111.3

Q ss_pred             ccccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            6 QETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         6 ~~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      ...++.++ |++..++|++|++|.+.++.+++..|+|+++-++|++..+++...+|++|++-.+..+.+.+++.|.....
T Consensus       275 ~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~e  354 (649)
T KOG1179|consen  275 YYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEE  354 (649)
T ss_pred             HHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhh
Confidence            45678888 99999999999999999999999999999999999999999999999999999999999999998876655


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCND  132 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~  132 (149)
                      .-..+|..+--|  +.++.++.+.++|+..++.+.||+||......+.
T Consensus       355 r~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~  400 (649)
T KOG1179|consen  355 RQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY  400 (649)
T ss_pred             cCceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCcceeeee
Confidence            556788776555  8999999999999877799999999987665544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.65  E-value=3.4e-15  Score=124.16  Aligned_cols=119  Identities=17%  Similarity=0.194  Sum_probs=104.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+.++ |++++.+|++|.+|+...++.++..|+++++.++ .+++.+.+.++++++|.+..+|+++..+.+..  ...++
T Consensus       829 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~  906 (1140)
T PRK06814        829 IDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDF  906 (1140)
T ss_pred             hCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccc
Confidence            45566 9999999999999987788899999999998864 57788999999999999999999999987653  34567


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||+++++++.+++++.++ .++++.||+||++....
T Consensus       907 ~~lr~v~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~  949 (1140)
T PRK06814        907 RSLRYVFAGAEKVKEETRQTWMEKFG-IRILEGYGVTETAPVIA  949 (1140)
T ss_pred             cceeEEEEcCCcCCHHHHHHHHHHhC-CcEEeccccccccceEE
Confidence            89999999999999999999999886 89999999999986544

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.65  E-value=2.3e-15  Score=117.37  Aligned_cols=119  Identities=17%  Similarity=0.236  Sum_probs=101.8

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      +++.+ |++++.+|++|.+|+ ...+.++..|+++++.+ .++++.+++.++++++|.+.++|+++..++........+.
T Consensus       219 ~~~~~~~~~l~~~pl~h~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  297 (576)
T PRK05620        219 LAVTHGESFLCCVPIYHVLSW-GVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPER  297 (576)
T ss_pred             cCCCCCCeEEEeCChHHhhhh-HHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCccc
Confidence            45555 899999999999998 56788999999999875 5799999999999999999999999998876433233344


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      .++|.++.||+++++++.+++++.++ +++++.||+||++..+
T Consensus       298 ~~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~  339 (576)
T PRK05620        298 MSLQEIYVGGSAVPPILIKAWEERYG-VDVVHVWGMTETSPVG  339 (576)
T ss_pred             CceeEEEEcCCCCCHHHHHHHHHHhC-Cceeeeccccccccce
Confidence            57999999999999999999998887 8999999999998543

>PRK12467 peptide synthase; Provisional

Probab=99.65  E-value=1.6e-15  Score=136.93  Aligned_cols=121  Identities=15%  Similarity=0.126  Sum_probs=106.9

Q ss_pred             cccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         7 ~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      ..+++++ |+++...|++|+.++ +.++.++..|+++++.++  ++++.+++.++++++|++.++|+++..+.+..  ..
T Consensus      3271 ~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~ 3347 (3956)
T PRK12467       3271 EAYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GG 3347 (3956)
T ss_pred             HhcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cc
Confidence            3456666 999999999999997 788999999999999875  68999999999999999999999999997653  23


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++++|.+++||+++++++.++|.+.+++.+++|.||+||++..++
T Consensus      3348 ~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 3394 (3956)
T PRK12467       3348 ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394 (3956)
T ss_pred             cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeE
Confidence            46788999999999999999999998887788999999999985544

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.65  E-value=2.8e-15  Score=114.88  Aligned_cols=115  Identities=27%  Similarity=0.321  Sum_probs=101.7

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCCCCCceE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKL   91 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~l~~lr~   91 (149)
                      +++++..|++|.+++. ..+.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++.+..  ...+++++|.
T Consensus       188 ~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~  266 (502)
T PRK08276        188 SVYLSPAPLYHTAPLR-FGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRV  266 (502)
T ss_pred             CEEEEcCcHHHHHHHH-HHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceE
Confidence            7899999999999984 445799999999999989999999999999999999999999999876542  2346789999


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           92 VGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        92 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +.+||+++++++++++++.++ .++++.||+||++.++.
T Consensus       267 i~~~g~~~~~~~~~~~~~~~~-~~~~~~yG~tE~~~~~~  304 (502)
T PRK08276        267 AIHAAAPCPVEVKRAMIDWWG-PIIHEYYASSEGGGVTV  304 (502)
T ss_pred             EEecCCCCCHHHHHHHHHHhC-cHhhhhcccccccceeE
Confidence            999999999999999999886 78999999999986443

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.65  E-value=4.2e-15  Score=116.38  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=100.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++++ |+++..+|++|.+|+...++.++..|+++++.++++++.+++.++++++|++.++|++++.+.+..........
T Consensus       235 ~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~  314 (600)
T PRK08279        235 LRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDH  314 (600)
T ss_pred             cCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCc
Confidence            55666 99999999999999977777888999999999999999999999999999999999999998876544334455


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      ++|.+  +|+++++++.+++.+.+|..++++.||+||++..
T Consensus       315 ~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~  353 (600)
T PRK08279        315 RLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVG  353 (600)
T ss_pred             ceeEE--ecCCCCHHHHHHHHHHhCcceeeeeeccccccee
Confidence            67654  4778999999999999985569999999998743

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.65  E-value=4.2e-15  Score=115.63  Aligned_cols=116  Identities=20%  Similarity=0.299  Sum_probs=101.0

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~   92 (149)
                      +++++.+|++|.+|+...++..+..|++.++.+ ..+++.+++.++++++|.+.++|+++..+.+.......+++++|.+
T Consensus       252 ~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v  331 (562)
T PRK05677        252 EILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLT  331 (562)
T ss_pred             cEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEE
Confidence            688999999999998777788888888877665 5689999999999999999999999999987654444567789999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++||+++++++.+++++.++ +++++.||+||++....
T Consensus       332 ~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~  368 (562)
T PRK05677        332 LSGGMALQLATAERWKEVTG-CAICEGYGMTETSPVVS  368 (562)
T ss_pred             EEcCccCCHHHHHHHHHHcC-CCeeccCCccccCccee
Confidence            99999999999999999886 89999999999885544

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.65  E-value=2e-15  Score=126.75  Aligned_cols=121  Identities=14%  Similarity=0.037  Sum_probs=103.8

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |++++..|++|..++ +.++.++..|+++++.+   ..+++.+.+.++++++|.+.++|+++..+++......
T Consensus       633 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~  711 (1296)
T PRK10252        633 HYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG  711 (1296)
T ss_pred             hcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc
Confidence            456666 999999999999998 78899999999999986   3589999999999999999999999999886532221


Q ss_pred             --CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 --FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 --~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                        ..++++|.+++||+++++++.++|++.++ .+++|.||+||++..++
T Consensus       712 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~l~n~YG~TE~~~~~~  759 (1296)
T PRK10252        712 ARQSCASLRQVFCSGEALPADLCREWQQLTG-APLHNLYGPTEAAVDVS  759 (1296)
T ss_pred             ccccCCCccEEEEecCCCCHHHHHHHHhcCC-CEEEeCCCcchhhheee
Confidence              34678999999999999999999998876 89999999999985443

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.65  E-value=8e-16  Score=118.88  Aligned_cols=132  Identities=19%  Similarity=0.215  Sum_probs=112.1

Q ss_pred             eccccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC
Q 032003            5 DQETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (149)
Q Consensus         5 ~~~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~   81 (149)
                      ...++++.+ |+.++...+.|+.|.++..++++.+|+++++.+  ++++..+++.+.++++|.++..|+.++.+.+....
T Consensus       272 ~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~  351 (626)
T KOG1175|consen  272 SRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQE  351 (626)
T ss_pred             cceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccc
Confidence            345566777 999999999999999888999999999999986  35999999999999999999999999977654432


Q ss_pred             --CcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccccCC
Q 032003           82 --KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLK  136 (149)
Q Consensus        82 --~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~  136 (149)
                        ...++++||.+.+.|+|++++..+++.+.++..++.+.||+||+|..++.+..+.
T Consensus       352 ~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~  408 (626)
T KOG1175|consen  352 DVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGK  408 (626)
T ss_pred             cccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCC
Confidence              3344567999999999999999999999987446999999999997776554433

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.65  E-value=8.5e-15  Score=113.52  Aligned_cols=118  Identities=14%  Similarity=0.163  Sum_probs=102.2

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++++ +++++..|++|..++ ..++.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.+.......+
T Consensus       216 ~~~~~~~~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  294 (542)
T PRK06155        216 LEIGADDVLYTTLPLFHTNAL-NAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAH  294 (542)
T ss_pred             cCCCCCCEEEEecCHHHHHHH-HHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccC
Confidence            45666 899999999999998 5678999999999999889999999999999999999999999999887655555667


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+..||  +++++.+++++.++ .++++.||+||++.++.
T Consensus       295 ~l~~~~~g~--~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~  334 (542)
T PRK06155        295 RVRVALGPG--VPAALHAAFRERFG-VDLLDGYGSTETNFVIA  334 (542)
T ss_pred             ceEEEEEcC--CCHHHHHHHHHHcC-CCEEeeecccccCcccc
Confidence            898877665  57889999999887 89999999999986554

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.64  E-value=3.6e-15  Score=114.34  Aligned_cols=120  Identities=20%  Similarity=0.246  Sum_probs=101.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--CcCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD   85 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~   85 (149)
                      +++.. |+++..+|++|++++.+. +..+..|+++++.++++++.+++.++++++|.+.++|+++..+.+....  ...+
T Consensus       190 ~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  268 (501)
T PRK13390        190 YDISESDIYYSSAPIYHAAPLRWC-SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYD  268 (501)
T ss_pred             hCCCCCCeEEecccchhhhHHHHH-HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCC
Confidence            44555 899999999999998443 4456789999999889999999999999999999999999998864322  2345


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.++.||+++++++.+.+++.++ .++++.||+||++.++.
T Consensus       269 ~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  312 (501)
T PRK13390        269 VSSLRAVIHAAAPCPVDVKHAMIDWLG-PIVYEYYSSTEAHGMTF  312 (501)
T ss_pred             hhhhheEEEcCCCCCHHHHHHHHHhcC-CceeeeecccccCceEE
Confidence            778999999999999999999998887 88999999999975443

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.64  E-value=2.9e-15  Score=112.52  Aligned_cols=116  Identities=14%  Similarity=0.148  Sum_probs=100.7

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      ++... |+.+...|++|.+|+...++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+....    ..
T Consensus       137 ~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~  212 (414)
T PRK08308        137 LNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TF  212 (414)
T ss_pred             hCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cc
Confidence            34455 89999999999999877889999999999999889999999999999999999999999999875432    13


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++.+..||+++++++.+++++.  ..++++.||+||++.+..
T Consensus       213 ~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~  253 (414)
T PRK08308        213 QFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSI  253 (414)
T ss_pred             cccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeee
Confidence            58889999999999999999887  368999999999986544

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.64  E-value=3.8e-15  Score=114.02  Aligned_cols=118  Identities=11%  Similarity=0.059  Sum_probs=103.3

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      ++... |+++...|++|..++ ..++.++..|+++++.++   .+++.+++.+++++++.+.++|+++..+.........
T Consensus       177 ~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~  255 (502)
T TIGR01734       177 FPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQE  255 (502)
T ss_pred             CCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccc
Confidence            34455 899999999999998 678899999999999874   5889999999999999999999999877765444455


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      ++++++.+.++|+++++++.+++.+.++++++++.||+||++.
T Consensus       256 ~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  298 (502)
T TIGR01734       256 NYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATV  298 (502)
T ss_pred             cCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceE
Confidence            6789999999999999999999999998799999999999874

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.64  E-value=3.5e-15  Score=111.37  Aligned_cols=109  Identities=15%  Similarity=0.058  Sum_probs=91.6

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG   93 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~   93 (149)
                      |++++.+|++|++|..+.++.++..|+++++.+++++..+++.++.+  |++.++|+++..+.+.+    .++++++. +
T Consensus       139 dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i  211 (386)
T TIGR02372       139 RRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-V  211 (386)
T ss_pred             CeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-E
Confidence            68999999999999877888899999999998888998888888754  78899999999997643    34667876 5


Q ss_pred             EecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +||+++++++++++++. +..++++.||+||++++.+
T Consensus       212 ~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~  247 (386)
T TIGR02372       212 SSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGL  247 (386)
T ss_pred             ecCCCCCHHHHHHHHHh-cccchhheecccccccccc
Confidence            78999999999999876 4246899999999986554

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.63  E-value=3e-15  Score=118.71  Aligned_cols=117  Identities=22%  Similarity=0.280  Sum_probs=92.4

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-------
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-------   81 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-------   81 (149)
                      ++++ |++++.+|++|+++.. .....+..|+++++.+ .+++.+++.++++++|+++++|+++..+.+....       
T Consensus       265 ~~~~~d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~  342 (666)
T PLN02614        265 ALTVKDVYLSYLPLAHIFDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGF  342 (666)
T ss_pred             CCCCCcEEEEeccHHHHHHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCH
Confidence            3455 9999999999999984 4566788999998875 5899999999999999999999999987641100       


Q ss_pred             --------------------------Cc-----------CCC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccc
Q 032003           82 --------------------------KK-----------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFE  123 (149)
Q Consensus        82 --------------------------~~-----------~~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~t  123 (149)
                                                ..           ..+ +++|.+.+||+++++++ +++.+.+++++++++||+|
T Consensus       343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~T  421 (666)
T PLN02614        343 LKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLT  421 (666)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchH
Confidence                                      00           011 57999999999999875 5566666658999999999


Q ss_pred             cccccc
Q 032003          124 HLYYES  129 (149)
Q Consensus       124 E~~~~~  129 (149)
                      |++...
T Consensus       422 E~~~~~  427 (666)
T PLN02614        422 ESCAGT  427 (666)
T ss_pred             hhhhhe
Confidence            987543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.63  E-value=7.2e-15  Score=112.42  Aligned_cols=118  Identities=12%  Similarity=0.083  Sum_probs=103.5

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      +++.. ++++...|++|..+. ..++.++..|+++++.++   .+++.+++.++++++|.+..+|++++.+.........
T Consensus       179 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~  257 (503)
T PRK04813        179 FALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEE  257 (503)
T ss_pred             cCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcc
Confidence            34455 899999999999998 677899999999998874   5899999999999999999999999887665544556


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      +++++|.+.++|+++++++.+++.+.+++.++++.||+||++.
T Consensus       258 ~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~  300 (503)
T PRK04813        258 HLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATV  300 (503)
T ss_pred             cCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchhee
Confidence            7889999999999999999999999997789999999999874

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.63  E-value=1.1e-14  Score=111.25  Aligned_cols=116  Identities=21%  Similarity=0.270  Sum_probs=100.7

Q ss_pred             CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHH--hcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003           11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIE--KHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus        11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~--~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      ..+ |++++.+|++|+.|+...+..++..|+++++.++++++..+..+.  ++++|++..+|+++..+.+.+.....+++
T Consensus       173 ~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  252 (488)
T PRK09088        173 VDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALR  252 (488)
T ss_pred             CCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccc
Confidence            444 899999999999999777888999999999998889999998886  48899999999999999876654455678


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      ++|.+.+||++++.+..+++.+. + +++++.||+||++.+
T Consensus       253 ~l~~~~~gG~~~~~~~~~~~~~~-g-~~v~~~YG~TE~~~~  291 (488)
T PRK09088        253 HLTALFTGGAPHAAEDILGWLDD-G-IPMVDGFGMSEAGTV  291 (488)
T ss_pred             cceEEEecCCCCCHHHHHHHHHh-C-Cceeeeecccccccc
Confidence            99999999999999998888765 4 889999999999854

>PRK12467 peptide synthase; Provisional

Probab=99.63  E-value=3.8e-15  Score=134.51  Aligned_cols=122  Identities=17%  Similarity=0.170  Sum_probs=106.0

Q ss_pred             cccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCC
Q 032003            7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (149)
Q Consensus         7 ~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~   82 (149)
                      ..+++++ |++++..|++|+.++ +.++.++..|+++++.+.   .+++.+++.++++++|++.++|+++..+.+... .
T Consensus      1752 ~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~ 1829 (3956)
T PRK12467       1752 EAYQLSAADVVLQFTSFAFDVSV-WELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-Q 1829 (3956)
T ss_pred             HhcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-c
Confidence            3456666 999999999999998 788999999999999863   579999999999999999999999999987432 2


Q ss_pred             cCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        83 ~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ..+++++|.+++||+++++++.++|.+.+++.+++|.||+||++..++
T Consensus      1830 ~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t 1877 (3956)
T PRK12467       1830 VEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVT 1877 (3956)
T ss_pred             cccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEE
Confidence            345788999999999999999999999887788999999999985443

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.63  E-value=5.2e-15  Score=114.50  Aligned_cols=119  Identities=24%  Similarity=0.312  Sum_probs=102.3

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCC--CCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~--~~~~   83 (149)
                      .+++++ |++++.+|++|.+++.. ..+.++..|+++++.+.+++..+++.++++++|.+.++|+++..+++..  ....
T Consensus       217 ~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~  296 (536)
T PRK10946        217 ICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR  296 (536)
T ss_pred             hcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc
Confidence            445666 89999999999988743 5678899999999988889999999999999999999999999987652  2233


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      ..++++|.+.+||+++++++.+++.+.++ +++++.||+||+..
T Consensus       297 ~~~~~l~~v~~gg~~l~~~~~~~~~~~~g-~~~~~~YG~tE~~~  339 (536)
T PRK10946        297 AQLASLKLLQVGGARLSETLARRIPAELG-CQLQQVFGMAEGLV  339 (536)
T ss_pred             ccccceeEEEECCCCCCHHHHHHHHHhcC-CeEEEeecccccce
Confidence            45678999999999999999999998887 89999999999753

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.63  E-value=1.2e-14  Score=113.01  Aligned_cols=116  Identities=23%  Similarity=0.360  Sum_probs=101.6

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~   92 (149)
                      ++++..+|++|++|.....+..+..|++.++.. ..++..+++.++++++|.+..+|+++..+.+.+.....+++++|.+
T Consensus       259 ~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~  338 (562)
T PRK12492        259 EVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLT  338 (562)
T ss_pred             eEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEE
Confidence            577889999999998777777888888877664 5689999999999999999999999999988766556678899999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+||+++++++.+++++.++ +++.+.||+||++..++
T Consensus       339 ~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  375 (562)
T PRK12492        339 NSGGTALVKATAERWEQLTG-CTIVEGYGLTETSPVAS  375 (562)
T ss_pred             EeccccCCHHHHHHHHHHhC-CceeeccCccccCceee
Confidence            99999999999999998876 89999999999986554

>PRK12316 peptide synthase; Provisional

Probab=99.62  E-value=4.8e-15  Score=135.68  Aligned_cols=121  Identities=14%  Similarity=0.087  Sum_probs=106.0

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC--CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      .+++++ |++++..|++|+.+. +.++.++..|+++++.+.  ++++.+++.++++++|++.++|++++.+.+..... .
T Consensus      4729 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~-~ 4806 (5163)
T PRK12316       4729 RYELTPDDRVLQFMSFSFDGSH-EGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD-G 4806 (5163)
T ss_pred             hcCCCcCCeEEEecCcchhhHH-HHHHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc-c
Confidence            456666 999999999999998 788999999999999863  38999999999999999999999999998765432 3


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++++|.+++||+++++++.+++.+.+++++++|.||+||++..++
T Consensus      4807 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 4852 (5163)
T PRK12316       4807 EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVL 4852 (5163)
T ss_pred             CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEE
Confidence            6789999999999999999988888777789999999999986543

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.62  E-value=6.7e-15  Score=113.52  Aligned_cols=117  Identities=26%  Similarity=0.444  Sum_probs=99.8

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      +... |+.+..+|++|+.++ ..++ .+..|++.++.+  .++++.+++.++++++|.+.++|++++.+.+.+.....++
T Consensus       202 ~~~~~d~~l~~~p~~~~~~~-~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  279 (528)
T PRK07470        202 GTTEQDASLVVAPLSHGAGI-HQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDH  279 (528)
T ss_pred             CCCcccEEEEeccchhHHHH-HHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCC
Confidence            3444 899999999999998 4444 567777777664  5789999999999999999999999999988776555678


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      +++|.+++||++++++..+++.+.++ .++++.||+||++...
T Consensus       280 ~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~  321 (528)
T PRK07470        280 SSLRYVIYAGAPMYRADQKRALAKLG-KVLVQYFGLGEVTGNI  321 (528)
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHHhC-cHHHHhCCCcccCCce
Confidence            89999999999999999999988887 8899999999987543

>PRK12316 peptide synthase; Provisional

Probab=99.62  E-value=4.3e-15  Score=135.97  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=104.5

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |++++..|++|+.++ +.++.++..|+++++.+   .++++.+.+.++++++|++.++|++++.+.+.+.  .
T Consensus       690 ~~~~~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~  766 (5163)
T PRK12316        690 AYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--V  766 (5163)
T ss_pred             hcCCCCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--c
Confidence            456666 999999999999998 78899999999999985   4789999999999999999999999999987543  3


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      .+++++|.+.+||+++++++.+++.+.+++.+++|.||+||++.
T Consensus       767 ~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~  810 (5163)
T PRK12316        767 ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAI  810 (5163)
T ss_pred             ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChhee
Confidence            45789999999999999999999988887789999999999984

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.62  E-value=3.2e-15  Score=118.42  Aligned_cols=114  Identities=19%  Similarity=0.259  Sum_probs=90.4

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhC---------------
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH---------------   78 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~---------------   78 (149)
                      |++++.+|++|+++... .+.++..|+++++.+ .+++.+++.++++++|+++++|+++..+.+.               
T Consensus       267 d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l  344 (660)
T PLN02861        267 DSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKL  344 (660)
T ss_pred             CEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHH
Confidence            99999999999999854 456899999998874 6899999999999999999999999988631               


Q ss_pred             ----------------------CCCCcC-------CC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           79 ----------------------GLVKKF-------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        79 ----------------------~~~~~~-------~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                                            +.....       .+ .++|.+.+||+++++++.+ +.+.++..+++++||+||+++.
T Consensus       345 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~  423 (660)
T PLN02861        345 FDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGG  423 (660)
T ss_pred             HHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhc
Confidence                                  000000       11 4789999999999999855 5566664579999999998754


Q ss_pred             cc
Q 032003          129 SC  130 (149)
Q Consensus       129 ~~  130 (149)
                      ++
T Consensus       424 ~~  425 (660)
T PLN02861        424 CF  425 (660)
T ss_pred             ee
Confidence            43

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.62  E-value=3.5e-15  Score=117.42  Aligned_cols=117  Identities=20%  Similarity=0.092  Sum_probs=95.0

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCH---HHHHHHHHhcCceEEEecHHHHHHHHhCCCC----CcCC
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLV----KKFD   85 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~---~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~~   85 (149)
                      ++.+..+|++|++|+...++.++..|+++++.+ .+++   ..+++.++++++|++.++|+++..+++....    ...+
T Consensus       265 ~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~  344 (624)
T PRK12582        265 PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSF  344 (624)
T ss_pred             ceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHH
Confidence            789999999999998677778999999999976 3443   4567778899999999999999888753211    2234


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhC----C-CCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNV----P-SATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~----~-~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.+.+||+++++++.+++++.+    + ++++++.||+||++.+..
T Consensus       345 ~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~  394 (624)
T PRK12582        345 FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTT  394 (624)
T ss_pred             hhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceee
Confidence            67899999999999999999998863    2 267999999999986554

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.62  E-value=4.3e-15  Score=115.41  Aligned_cols=128  Identities=20%  Similarity=0.148  Sum_probs=95.2

Q ss_pred             CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhC--------CCC
Q 032003           11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLV   81 (149)
Q Consensus        11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~--------~~~   81 (149)
                      .++ |+.++.+|+.|++...+.....+..|  +......++..+.+.+++.++|.++++|.+|+.+.+.        +..
T Consensus       230 ~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g--~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~  307 (613)
T COG1022         230 IGPGDRVLSFLPLAHIFERAFEGGLALYGG--VTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAV  307 (613)
T ss_pred             CCCCcEEEEeCcHHHHHHHHHHHHHHhhcc--eEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchh
Confidence            555 99999999999999965433334444  4444456999999999999999999999999887531        100


Q ss_pred             C---------------------------------------cCCC-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeec
Q 032003           82 K---------------------------------------KFDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQ  121 (149)
Q Consensus        82 ~---------------------------------------~~~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG  121 (149)
                      +                                       +..+ .++|++.+||+++++++..+++..  ++++.++||
T Consensus       308 ~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYG  385 (613)
T COG1022         308 RRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYG  385 (613)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEec
Confidence            0                                       0011 268999999999999999999877  599999999


Q ss_pred             cccccccccccccCCCCCcee
Q 032003          122 FEHLYYESCNDYKLKRFDEFC  142 (149)
Q Consensus       122 ~tE~~~~~~~~~~~~~~~~~~  142 (149)
                      +||++++.+..++.....+++
T Consensus       386 lTEts~~~~v~~~~~~~~gtv  406 (613)
T COG1022         386 LTETSAVVSVNPPDRFVLGTV  406 (613)
T ss_pred             ccccccceEEccccCcccCCc
Confidence            999986665544444444444

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.62  E-value=1.7e-14  Score=111.03  Aligned_cols=115  Identities=23%  Similarity=0.293  Sum_probs=98.0

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHH-HHhCCC-CCcCCCCCc
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA-LAKHGL-VKKFDLSSL   89 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~-l~~~~~-~~~~~l~~l   89 (149)
                      ++++..+|++|..++ +.++.++..|+++++.+  .+++..+++.++++++|.+..+|..+.. +.+... ....+++++
T Consensus       220 ~~~~~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l  298 (533)
T PRK07798        220 MRRFPAPPLMHGAGQ-WAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSL  298 (533)
T ss_pred             ceEEEecchhhhhhH-HHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCce
Confidence            789999999999999 68889999999999998  7899999999999999999999865533 333222 233567899


Q ss_pred             eEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           90 KLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        90 r~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      |.+.+||+++++++.+++++.+++.++++.||+||++...
T Consensus       299 ~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~  338 (533)
T PRK07798        299 FAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGG  338 (533)
T ss_pred             EEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccccccc
Confidence            9999999999999999999998768999999999986443

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.62  E-value=8.6e-15  Score=110.24  Aligned_cols=114  Identities=25%  Similarity=0.363  Sum_probs=98.0

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .++.++ |+++...|++|++|+ ..++.++..|+++++.+.+  ..+++.++++++|.+.++|+++..+++....    .
T Consensus       146 ~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~----~  218 (436)
T TIGR01923       146 NLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGH----N  218 (436)
T ss_pred             hcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC----C
Confidence            345666 999999999999998 6788999999999998755  3899999999999999999999999876432    2


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||+++++++.+++++.  +.++++.||+||++...+
T Consensus       219 ~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~  260 (436)
T TIGR01923       219 ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVT  260 (436)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhcc
Confidence            679999999999999999988764  489999999999986544

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.62  E-value=7.6e-15  Score=113.72  Aligned_cols=111  Identities=19%  Similarity=0.143  Sum_probs=95.4

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG   93 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~   93 (149)
                      ++.+..+|++|..++ +..+.++..|+++++. +.++..+++.++++++|.+.++|+++..+.+.......+++++|.+.
T Consensus       215 ~~~~~~~p~~h~~~l-~~~~~~l~~G~~~v~~-~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~  292 (540)
T PRK05857        215 ETTYSPLPATHIGGL-WWILTCLMHGGLCVTG-GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVG  292 (540)
T ss_pred             ceeeecCCccccchH-HHHHHHhhcceeEEec-CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEE
Confidence            789999999999998 4677889999988764 46889999999999999999999999999887655556788999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      +||++++....++ .+.++ .++.+.||+||++..
T Consensus       293 ~gG~~~~~~~~~~-~~~~g-~~i~~~YG~TE~~~~  325 (540)
T PRK05857        293 YGGSRAIAADVRF-IEATG-VRTAQVYGLSETGCT  325 (540)
T ss_pred             EcCccCCchhHHH-HHHhC-CeeecccCCCcCCce
Confidence            9999998888754 45665 899999999999754

>PRK09274 peptide synthase; Provisional

Probab=99.62  E-value=3.8e-15  Score=115.47  Aligned_cols=115  Identities=25%  Similarity=0.318  Sum_probs=96.1

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-------CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-------KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG   79 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-------~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~   79 (149)
                      .+++.+ |+.+...|++|..++        ..|+++++.+       .++++.+++.++++++|+++++|+++..+.+..
T Consensus       209 ~~~~~~~~~~~~~~pl~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~  280 (552)
T PRK09274        209 DYGIEPGEIDLPTFPLFALFGP--------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYG  280 (552)
T ss_pred             HhCCCCCceeeeccCHHHhhhh--------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHh
Confidence            345666 899999999887654        3477777754       468999999999999999999999999998765


Q ss_pred             CCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCC-CcEEeeecccccccccc
Q 032003           80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQVVQFEHLYYESC  130 (149)
Q Consensus        80 ~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~i~~~YG~tE~~~~~~  130 (149)
                      .....+++++|.+.+||+++++++.+++++.++. +++++.||+||++.++.
T Consensus       281 ~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  332 (552)
T PRK09274        281 EANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS  332 (552)
T ss_pred             hhcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence            5455678899999999999999999999999963 79999999999985543

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.61  E-value=1.3e-14  Score=113.29  Aligned_cols=112  Identities=24%  Similarity=0.328  Sum_probs=96.5

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG   93 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~   93 (149)
                      ++.+..+|++|..|+ ...+.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.........++++.+.
T Consensus       228 ~~~l~~~pl~h~~g~-~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  306 (579)
T PLN03102        228 PVYLWTLPMFHCNGW-TFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVL  306 (579)
T ss_pred             CeEEecCChhhhcch-hHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEE
Confidence            788899999999998 5567788999999998888999999999999999999999999999876543333456788899


Q ss_pred             EecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      +||+++++++.+++++ ++ .++++.||+||+++.
T Consensus       307 ~gg~~~~~~~~~~~~~-~g-~~i~~~YG~tE~~~~  339 (579)
T PLN03102        307 TGGSPPPAALVKKVQR-LG-FQVMHAYGLTEATGP  339 (579)
T ss_pred             ECCCCCCHHHHHHHHH-cC-CeEEeecCccccCcc
Confidence            9999999999999865 55 899999999998743

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.60  E-value=9.2e-15  Score=123.60  Aligned_cols=118  Identities=11%  Similarity=-0.050  Sum_probs=102.4

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |+++...|++|+.++ +.++.++..|+++++.+.   .++..+.+.++++++|++.++|+++..+....   .
T Consensus       450 ~~~~~~~d~~~~~~~~~~d~~~-~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~  525 (1389)
T TIGR03443       450 RFGLSENDKFTMLSGIAHDPIQ-RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---T  525 (1389)
T ss_pred             hcCCCCCCEEEEecCceecchH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---c
Confidence            445666 899999999999988 788999999999999863   36899999999999999999999999887532   2


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      .+++++|.+++||++++++..+++++..++.+++|.||+||++..+
T Consensus       526 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       526 TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence            4578899999999999999999998887779999999999997543

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.60  E-value=2.3e-14  Score=110.86  Aligned_cols=118  Identities=24%  Similarity=0.297  Sum_probs=99.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++++ |++++.+|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.. ....+++
T Consensus       217 ~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~  294 (540)
T PRK06164        217 YGYDPGAVLLAALPFCGVFGF-STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFP  294 (540)
T ss_pred             cCCCCCCEEEEcCCchhHHHH-HHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCc
Confidence            45556 899999999999999 67899999999999999899999999999999999999999999998763 2445688


Q ss_pred             CceEEEEec-CCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGA-APLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg-~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+..+| .+...+..+++.+. + +++++.||+||++...+
T Consensus       295 ~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~YG~tE~~~~~~  336 (540)
T PRK06164        295 SARLFGFASFAPALGELAALARAR-G-VPLTGLYGSSEVQALVA  336 (540)
T ss_pred             ceeeeeeccCCcchHHHHHHHhhc-C-Cceecceeeccccceee
Confidence            899887765 55666777776655 4 88999999999985543

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.59  E-value=5.2e-14  Score=108.92  Aligned_cols=120  Identities=17%  Similarity=0.074  Sum_probs=98.2

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+++++ |+++..+|++|..++...++.++..|+++++.++++++.+++.++++++|.+.++|+.+..+++.++......
T Consensus       187 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~  266 (529)
T PRK07867        187 RFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDAD  266 (529)
T ss_pred             hhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccc
Confidence            345566 9999999999999997777789999999999988999999999999999999999999999887654333334


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|. .+||+++++.. +++.+.++ .++++.||+||++....
T Consensus       267 ~~lr~-~~gg~~~~~~~-~~~~~~~g-~~l~~~YG~TE~~~~~~  307 (529)
T PRK07867        267 NPLRI-VYGNEGAPGDI-ARFARRFG-CVVVDGFGSTEGGVAIT  307 (529)
T ss_pred             cceEE-EecCCCChHHH-HHHHHHhC-CcEEEeecccccccccc
Confidence            56774 46888877664 67777776 89999999999985443

>PRK05691 peptide synthase; Validated

Probab=99.59  E-value=1.4e-14  Score=131.72  Aligned_cols=120  Identities=19%  Similarity=0.183  Sum_probs=105.8

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC---CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |++++..|++|+.++ +.++.++..|+++++.+   ..+++.+.+.++++++|++.++|++++.+.+.+.  .
T Consensus      1308 ~~~~~~~d~~l~~~~~~fd~s~-~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~ 1384 (4334)
T PRK05691       1308 TYALDDSDVLMQKAPISFDVSV-WECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--A 1384 (4334)
T ss_pred             hcCCCCCCEEEEeCCccHHHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--c
Confidence            456666 999999999999998 78999999999999985   4689999999999999999999999999986532  3


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++++|.+++||+++++++.++|.+.+++.+++|.||+||++..++
T Consensus      1385 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 1431 (4334)
T PRK05691       1385 AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVT 1431 (4334)
T ss_pred             ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeee
Confidence            45789999999999999999999999988789999999999985443

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.59  E-value=3.7e-14  Score=110.14  Aligned_cols=116  Identities=23%  Similarity=0.360  Sum_probs=99.7

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~   92 (149)
                      +++++..|++|.+|+....+.++..|++.++.+ ..++..+++.++++++|.+..+|+++..+.+.+...+.+++++|.+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v  334 (560)
T PRK08751        255 EVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMT  334 (560)
T ss_pred             ceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheee
Confidence            577888999999998655667777787776654 6789999999999999999999999999988765555678899999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+||+++++++.+++++.++ .++++.||+||++..++
T Consensus       335 ~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  371 (560)
T PRK08751        335 LGGGMAVQRSVAERWKQVTG-LTLVEAYGLTETSPAAC  371 (560)
T ss_pred             eeCCCCCCHHHHHHHHHHhC-CeEEEeeccccCCCcee
Confidence            99999999999999999886 88999999999985544

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.58  E-value=1.3e-14  Score=110.48  Aligned_cols=113  Identities=18%  Similarity=0.194  Sum_probs=90.0

Q ss_pred             CCCCcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCc
Q 032003           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (149)
Q Consensus        10 ~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l   89 (149)
                      +..+++.++.+|++|.+|+ ..++.++..|+++++.+..+.+.......++++|++.++|+++..+.+..   ..+++++
T Consensus       157 ~~~~~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l~~l  232 (452)
T PRK07445        157 QLQQVNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWLAQF  232 (452)
T ss_pred             cCCCCceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhhhcc
Confidence            4445667889999999998 67789999999999987432222233445788999999999999987632   2357889


Q ss_pred             eEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           90 KLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        90 r~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      |.+.+||+++++++.+++++. + .++++.||+||++..
T Consensus       233 ~~i~~gG~~l~~~~~~~~~~~-~-~~l~~~YG~TE~~~~  269 (452)
T PRK07445        233 RTILLGGAPAWPSLLEQARQL-Q-LRLAPTYGMTETASQ  269 (452)
T ss_pred             eEEEECCccCCHHHHHHHHhc-C-CeEecCcchhhhccc
Confidence            999999999999999988764 4 899999999998743

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.58  E-value=9.1e-15  Score=112.93  Aligned_cols=122  Identities=19%  Similarity=0.163  Sum_probs=95.2

Q ss_pred             ccCCC-C-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CC--CHHHHHHHHHhcCceEEEecHHHHHHHHhCCC-
Q 032003            8 TAGEL-D-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KF--DLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-   80 (149)
Q Consensus         8 ~~~~~-~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~--~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~-   80 (149)
                      .++.+ + |++++.+|++|++|+ ..++.++..|+++++.+  .+  ++..+++.++++++|.+..+|.++..+.+... 
T Consensus       187 ~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~  265 (525)
T PRK05851        187 RVGLDAATDVGCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR  265 (525)
T ss_pred             HhCCCCCCCeEEEcCCCccCccH-HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc
Confidence            34555 4 999999999999999 56789999999999986  34  68899999999999987666655555543221 


Q ss_pred             CCcCCCCCceEEEEecCCCCHHHHHHHHHh---CC--CCcEEeeecccccccccc
Q 032003           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKN---VP--SATVIQVVQFEHLYYESC  130 (149)
Q Consensus        81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~---~~--~~~i~~~YG~tE~~~~~~  130 (149)
                      ....+++++|.+.+||+++++++.++|.+.   ++  ..++++.||+||++...+
T Consensus       266 ~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~  320 (525)
T PRK05851        266 VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVT  320 (525)
T ss_pred             ccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEE
Confidence            233457899999999999999999998774   33  235999999999975443

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.57  E-value=8.3e-14  Score=110.24  Aligned_cols=118  Identities=18%  Similarity=0.120  Sum_probs=99.2

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--   80 (149)
                      .+++++ |++++..++.|+.+.  .++.++..|+++++.++    ++++.+++.++++++|++..+|++++.+.+...  
T Consensus       299 ~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  376 (655)
T PRK03584        299 HCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVP  376 (655)
T ss_pred             hcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCc
Confidence            345666 999999999998654  35689999999999752    589999999999999999999999999876432  


Q ss_pred             CCcCCCCCceEEEEecCCCCHHHHHHHHHhCC-CCcEEeeeccccccc
Q 032003           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVVQFEHLYY  127 (149)
Q Consensus        81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~i~~~YG~tE~~~  127 (149)
                      ....+++++|.+.+||+++++++.+++++.++ +.++.+.||+||++.
T Consensus       377 ~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~  424 (655)
T PRK03584        377 GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICS  424 (655)
T ss_pred             cccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhc
Confidence            13357889999999999999999999999884 478999999999753

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.57  E-value=7.5e-14  Score=108.44  Aligned_cols=116  Identities=22%  Similarity=0.333  Sum_probs=100.5

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~   92 (149)
                      +.+++.+|++|.++.....+.++..|++.++.+ ..+++.+++.++++++|.+.++|+++..+.+.......+++++|.+
T Consensus       253 ~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~  332 (557)
T PRK07059        253 LNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVA  332 (557)
T ss_pred             cEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEE
Confidence            567888999999987667778888888877765 4589999999999999999999999999988766555677899999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ..||+++++.+.++|++.++ .++++.||+||++.+++
T Consensus       333 ~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  369 (557)
T PRK07059        333 NGGGMAVQRPVAERWLEMTG-CPITEGYGLSETSPVAT  369 (557)
T ss_pred             EeccccCCHHHHHHHHHHhC-CCeeeccccccccchhh
Confidence            99999999999999998886 89999999999986544

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.57  E-value=9.3e-14  Score=107.98  Aligned_cols=116  Identities=23%  Similarity=0.279  Sum_probs=100.5

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~   92 (149)
                      ++++..+|++|.+++....+..+..|+++++.. ..++..+++.++++++|.+.++|+++..+.+.+.....+++++|.+
T Consensus       251 ~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~  330 (560)
T PRK08974        251 ELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLS  330 (560)
T ss_pred             cEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEE
Confidence            678889999999998677778888899877764 5688999999999999999999999999988765555667899999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+||+++++++.++|++.++ .++++.||+||++....
T Consensus       331 ~~gg~~~~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~  367 (560)
T PRK08974        331 VGGGMAVQQAVAERWVKLTG-QYLLEGYGLTECSPLVS  367 (560)
T ss_pred             EecCccCCHHHHHHHHHHhC-CcEEeeecccccCceee
Confidence            99999999999999998876 89999999999985544

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.57  E-value=8.2e-14  Score=108.01  Aligned_cols=120  Identities=15%  Similarity=0.067  Sum_probs=98.1

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+++++ |+++..+|++|.+|+...++.++..|+++++.+.++++.+++.++++++|.+..+|+.+..++..+.......
T Consensus       185 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~  264 (540)
T PRK13388        185 RFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDAD  264 (540)
T ss_pred             HhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccc
Confidence            455666 8999999999999986666678999999999888899999999999999999999999999987654322223


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++.+ . |++++++..+++.+.++ .++++.||+||++.++.
T Consensus       265 ~~l~~~-~-G~~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~  305 (540)
T PRK13388        265 NPLRVA-F-GNEASPRDIAEFSRRFG-CQVEDGYGSSEGAVIVV  305 (540)
T ss_pred             cceEEE-E-CCCCCHHHHHHHHHHhC-Cceecccccccccceee
Confidence            456643 3 56778888899988886 89999999999986554

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.57  E-value=9.8e-14  Score=106.76  Aligned_cols=118  Identities=17%  Similarity=0.182  Sum_probs=100.0

Q ss_pred             CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCc
Q 032003           11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (149)
Q Consensus        11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l   89 (149)
                      +.. +++++.+|++|..+....++.++..|+++++.++++++.+++.++++++|.+.++|++++.+...+........++
T Consensus       211 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l  290 (517)
T PRK08008        211 LRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCL  290 (517)
T ss_pred             CCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccc
Confidence            344 8999999999998887888999999999999999999999999999999999999999999987654433344568


Q ss_pred             eEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           90 KLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        90 r~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +.+..+ .+++++..+++.+.++ .++++.||+||++...+
T Consensus       291 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  329 (517)
T PRK08008        291 REVMFY-LNLSDQEKDAFEERFG-VRLLTSYGMTETIVGII  329 (517)
T ss_pred             eeeEEe-cCCCHHHHHHHHHHhC-CeEEeeccccccccccc
Confidence            877765 4789999999998887 89999999999975433

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.57  E-value=3.4e-15  Score=109.04  Aligned_cols=123  Identities=29%  Similarity=0.373  Sum_probs=110.2

Q ss_pred             ceeeccccCCCC-cEEEEecchhhHHHHH-HHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCC
Q 032003            2 VTMDQETAGELD-YVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG   79 (149)
Q Consensus         2 ~~~~~~~~~~~~-~~~l~~~p~~h~~g~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~   79 (149)
                      +.++....+++. .+.++.+|..|-+.+. -+.++.++.|+++|+.+..+|+..+.++++|++|+..++|.....++...
T Consensus       218 v~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~  297 (542)
T COG1021         218 VRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAA  297 (542)
T ss_pred             eeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhh
Confidence            345666678888 8999999999966542 35678999999999999999999999999999999999999998888887


Q ss_pred             CCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccc
Q 032003           80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHL  125 (149)
Q Consensus        80 ~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~  125 (149)
                      +....+++|||.+..||+.++++..++....++ +.+.+.|||.|.
T Consensus       298 e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg-C~LQQVFGMAEG  342 (542)
T COG1021         298 EWERADLSSLRLLQVGGARLSATLARRVPAVLG-CQLQQVFGMAEG  342 (542)
T ss_pred             hcccCCchheeEEeecCcccCHHHHhhchhhhC-chHHHHhhhhhh
Confidence            778899999999999999999999999999998 999999999994

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.55  E-value=9.2e-14  Score=104.85  Aligned_cols=117  Identities=15%  Similarity=0.122  Sum_probs=94.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC--C
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D   85 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~   85 (149)
                      .+.++ |++++..++.+..+.....+.....|++++..+..+++.+++.++++++|++.++|+++..+++.......  .
T Consensus       114 ~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~  193 (422)
T TIGR02155       114 AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA  193 (422)
T ss_pred             cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc
Confidence            46666 88887776655444334456678889999888777889999999999999999999999998764322222  2


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY  126 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~  126 (149)
                      ..++|.+++||+++++++.+.+++.++ +++++.||+||++
T Consensus       194 ~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~YG~tE~~  233 (422)
T TIGR02155       194 QTSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIYGLSEVI  233 (422)
T ss_pred             cCceEEEEEeCCcCCHHHHHHHHHHhC-CceEecccchhhc
Confidence            357999999999999999999999997 8999999999984

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>PRK05691 peptide synthase; Validated

Probab=99.55  E-value=7.8e-14  Score=126.95  Aligned_cols=118  Identities=12%  Similarity=0.095  Sum_probs=104.5

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |+++...|++|+.++ +.++.++..|+++++.+.   .++..+.+.++++++|++..+|+++..++...   .
T Consensus      3904 ~~~~~~~~~~~~~~s~~fd~s~-~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~ 3979 (4334)
T PRK05691       3904 YLALSEADVIAQTASQSFDISV-WQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---R 3979 (4334)
T ss_pred             hcCCCccceEEEecCCchhHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---c
Confidence            456677 999999999999998 889999999999999863   57999999999999999999999999887542   2


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      ..++++|.+.+||+++++++.++|.+.+++.+++|.||+||++..+
T Consensus      3980 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~ 4025 (4334)
T PRK05691       3980 QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDV 4025 (4334)
T ss_pred             ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEE
Confidence            3477899999999999999999999988889999999999998544

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.54  E-value=3.9e-14  Score=111.60  Aligned_cols=121  Identities=17%  Similarity=0.187  Sum_probs=96.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CC--CHHHHHHHHHhcCc---eEEEecHHHHHHHHhC--
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KF--DLEMFLRAIEKHRV---THIWVVPPLILALAKH--   78 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~--~~~~~~~~l~~~~~---t~~~~~P~~~~~l~~~--   78 (149)
                      +++.+ |+++..+|++|+.|+. ..+.++..|+++++.+  .+  ++..+++.++++++   +.+..+|+++..+...  
T Consensus       216 ~~~~~~d~~l~~~Pl~h~~gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~  294 (631)
T PRK07769        216 LEGQEGDRGVSWLPFFHDMGLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG  294 (631)
T ss_pred             cCCCCcceEEEeCCCcCchhhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc
Confidence            45555 8999999999999994 5566777899988875  34  89999999999886   7888999988776642  


Q ss_pred             -CCC--CcCCCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeecccccccccc
Q 032003           79 -GLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYESC  130 (149)
Q Consensus        79 -~~~--~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~  130 (149)
                       +..  ...+++++|.+.+||+++++++.+++.+.++     ...+++.||+||++...+
T Consensus       295 ~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~  354 (631)
T PRK07769        295 LPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVS  354 (631)
T ss_pred             cchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEe
Confidence             111  1356889999999999999999999998873     235999999999875444

>PLN02479 acetate-CoA ligase

Probab=99.54  E-value=1.7e-13  Score=106.75  Aligned_cols=115  Identities=18%  Similarity=0.224  Sum_probs=93.4

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc-CCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-FDLS   87 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-~~l~   87 (149)
                      ++.+ |+.+..+|++|+.++.......+..|.+++ ...++++.+++.++++++|++.++|+++..+.+...... .+++
T Consensus       232 ~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  310 (567)
T PLN02479        232 GMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLP  310 (567)
T ss_pred             CCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccccccc
Confidence            4455 899999999999998554444566665554 456899999999999999999999999999987543222 2568


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      +++.+.++|+++++++.+++.+. + .++++.||+||+++
T Consensus       311 ~l~~~~~~G~~~~~~~~~~~~~~-~-~~~~~~yG~tE~~~  348 (567)
T PLN02479        311 RVVHVMTAGAAPPPSVLFAMSEK-G-FRVTHTYGLSETYG  348 (567)
T ss_pred             ceeEEEEcCCCCCHHHHHHHHhc-C-Cceecccccccccc
Confidence            89999999999999999999875 4 88999999999853

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.52  E-value=3e-13  Score=105.26  Aligned_cols=117  Identities=23%  Similarity=0.262  Sum_probs=99.3

Q ss_pred             CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCc
Q 032003           11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (149)
Q Consensus        11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l   89 (149)
                      ..+ |+++..+|++|++|+...++.++..|+++++.++++++.+++.++++++|.+..+|..+..+.+.+.....+++++
T Consensus       248 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l  327 (567)
T PRK06178        248 GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSL  327 (567)
T ss_pred             CCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchh
Confidence            444 8999999999999987778899999999999998999999999999999999999999999987665555567788


Q ss_pred             eEEEE--ecCCCCHHHHHHHHHhCCCCcEE-eeecccccccc
Q 032003           90 KLVGS--GAAPLGKELMEECAKNVPSATVI-QVVQFEHLYYE  128 (149)
Q Consensus        90 r~~~~--gg~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~  128 (149)
                      +.+..  .+++++++..+++++.++ ..++ +.||+||++..
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~YG~tE~~~~  368 (567)
T PRK06178        328 RQVRVVSFVKKLNPDYRQRWRALTG-SVLAEAAWGMTETHTC  368 (567)
T ss_pred             eeeeeccccccCCHHHHHHHHHHhC-Cccccccccccccccc
Confidence            87644  458999999999999887 5445 57999998743

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.51  E-value=4.9e-13  Score=103.54  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=91.9

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~   88 (149)
                      ++.. ++.++.+|++|..|+...++..+ .|++.+..++++++.+++.++++++|++.++|+++..+++.+......+.+
T Consensus       219 ~~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  297 (545)
T PRK08162        219 GMPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDH  297 (545)
T ss_pred             CCCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCcc
Confidence            3444 88999999999999855444444 555655666789999999999999999999999999998765443334555


Q ss_pred             ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      .+.+..+|++++++..+++++. + .++++.||+||+++
T Consensus       298 ~~~~~~~g~~~~~~~~~~~~~~-~-~~~~~~YG~tE~~~  334 (545)
T PRK08162        298 PVHAMVAGAAPPAAVIAKMEEI-G-FDLTHVYGLTETYG  334 (545)
T ss_pred             ceEEEECCCCCCHHHHHHHHHh-C-CceeecccccccCc
Confidence            6677899999999999998775 4 89999999999853

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.51  E-value=2.3e-13  Score=107.93  Aligned_cols=116  Identities=24%  Similarity=0.248  Sum_probs=90.5

Q ss_pred             CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC---------
Q 032003           11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL---------   80 (149)
Q Consensus        11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~---------   80 (149)
                      +++ |++++.+|++|+++... ...++..|+++++.+. +++.+.+.++++++|++.++|.++..+.+...         
T Consensus       263 ~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~  340 (660)
T PLN02430        263 MTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPR  340 (660)
T ss_pred             CCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHH
Confidence            445 99999999999999854 4567889999987754 78899999999999999999999988764100         


Q ss_pred             ----------------------CCcC---C----------C-CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccc
Q 032003           81 ----------------------VKKF---D----------L-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEH  124 (149)
Q Consensus        81 ----------------------~~~~---~----------l-~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE  124 (149)
                                            ....   +          + .++|.+.+||+++++++.++++. +++.+++++||+||
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~-~~~~~i~~~YG~TE  419 (660)
T PLN02430        341 RRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRV-TSCAFVVQGYGLTE  419 (660)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHH-hcCCCeeeecchhh
Confidence                                  0000   0          1 57999999999999998766654 44478999999999


Q ss_pred             ccccc
Q 032003          125 LYYES  129 (149)
Q Consensus       125 ~~~~~  129 (149)
                      +++..
T Consensus       420 ~~~~~  424 (660)
T PLN02430        420 TLGPT  424 (660)
T ss_pred             hhhce
Confidence            87543

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.51  E-value=1.6e-13  Score=109.45  Aligned_cols=119  Identities=18%  Similarity=0.108  Sum_probs=87.9

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC------CC--HHHHHHHHHhcCceEEEecHHHHHHHHhCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK------FD--LEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~------~~--~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~   80 (149)
                      ++.+ |+++..+|++|+++... ....+..|+++.....      ++  ++.+++.++++++|++.++|.++..+.+...
T Consensus       288 ~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~  366 (696)
T PLN02387        288 KLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVR  366 (696)
T ss_pred             CCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHH
Confidence            4455 99999999999999844 3445666666655332      11  2445678999999999999999998864210


Q ss_pred             CC-------------------------------c---------------CCC-CCceEEEEecCCCCHHHHHHHHHhCCC
Q 032003           81 VK-------------------------------K---------------FDL-SSLKLVGSGAAPLGKELMEECAKNVPS  113 (149)
Q Consensus        81 ~~-------------------------------~---------------~~l-~~lr~~~~gg~~~~~~~~~~~~~~~~~  113 (149)
                      ..                               .               ..+ +++|.+.+||+++++++.++++..++ 
T Consensus       367 ~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g-  445 (696)
T PLN02387        367 KKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG-  445 (696)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-
Confidence            00                               0               001 57999999999999999988887776 


Q ss_pred             CcEEeeecccccccccc
Q 032003          114 ATVIQVVQFEHLYYESC  130 (149)
Q Consensus       114 ~~i~~~YG~tE~~~~~~  130 (149)
                      ++++++||+||++..++
T Consensus       446 ~~v~~~YG~TEt~~~~~  462 (696)
T PLN02387        446 APIGQGYGLTETCAGAT  462 (696)
T ss_pred             CCeeEeechhhccccee
Confidence            89999999999975443

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.50  E-value=4.5e-13  Score=106.16  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=95.3

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--   80 (149)
                      .+++++ |++++..|++|+.+. + ++.++..|+++++.++    .+++.+++.++++++|++..+|++++.+.+...  
T Consensus       300 ~~~~~~~d~~~~~~~~~~~~~~-~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~  377 (652)
T TIGR01217       300 HCDLGPGDRLFYYTTTGWMMWN-W-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHP  377 (652)
T ss_pred             ccCCCCCcEEEEeCCcchhhhH-H-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCc
Confidence            346666 999999999998653 3 4589999999999852    378999999999999999888888877755321  


Q ss_pred             CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCC-CcEEeeecccccc
Q 032003           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQVVQFEHLY  126 (149)
Q Consensus        81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~i~~~YG~tE~~  126 (149)
                      ....+++++|.+.+||+++++++.+++++.++. ..+.+.||+||++
T Consensus       378 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~  424 (652)
T TIGR01217       378 ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDIC  424 (652)
T ss_pred             cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHh
Confidence            234578999999999999999999999888752 4677899999974

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.50  E-value=8.7e-13  Score=97.38  Aligned_cols=112  Identities=20%  Similarity=0.217  Sum_probs=93.5

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEc---CCCCHHHHHHHHHhcC--ceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHR--VTHIWVVPPLILALAKHGLVKKFDLSS   88 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~---~~~~~~~~~~~l~~~~--~t~~~~~P~~~~~l~~~~~~~~~~l~~   88 (149)
                      ++.+...|++|+.|+ ..++.++..|+++++.   +.++++.+++.+++++  .++...+|..+..++..+. ...++++
T Consensus        75 ~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~  152 (358)
T PRK07824         75 GQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAE  152 (358)
T ss_pred             CeEEEECChHHHHHH-HHHHHHHHcCCeEEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCccc
Confidence            778899999999998 6678899999998873   3678999999999998  5666778988888776543 2346789


Q ss_pred             ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      +|.+.+||+++++++.+++.+. + +++++.||+||++..+
T Consensus       153 l~~i~~gG~~l~~~~~~~~~~~-~-~~v~~~YG~TE~~~~~  191 (358)
T PRK07824        153 LDAVLVGGGPAPAPVLDAAAAA-G-INVVRTYGMSETSGGC  191 (358)
T ss_pred             ceEEEECCCCCCHHHHHHHHhc-C-CcEEecccCCccCCCc
Confidence            9999999999999999998764 4 8999999999987544

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.45  E-value=6.4e-13  Score=106.05  Aligned_cols=111  Identities=18%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHH-------HHHhcCceEEEecHHHHHHHHhCCCC-----
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWVVPPLILALAKHGLV-----   81 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~l~~~~~t~~~~~P~~~~~l~~~~~~-----   81 (149)
                      |++++.+|++|+++.. .....+..|+++++.   +++.+.+       .++++++|++.++|.+++.+.+....     
T Consensus       311 d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~  386 (700)
T PTZ00216        311 ETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPV  386 (700)
T ss_pred             CEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhcc
Confidence            8999999999999974 445567778877663   4555554       68899999999999999887542100     


Q ss_pred             --------------------CcC----------------CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccc
Q 032003           82 --------------------KKF----------------DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHL  125 (149)
Q Consensus        82 --------------------~~~----------------~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~  125 (149)
                                          ...                .-+++|.+.+||+++++++.++++..++  +++++||+||+
T Consensus       387 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG~TEt  464 (700)
T PTZ00216        387 GSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWGLTET  464 (700)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhccCcccc
Confidence                                000                0157999999999999999988877654  89999999999


Q ss_pred             ccccc
Q 032003          126 YYESC  130 (149)
Q Consensus       126 ~~~~~  130 (149)
                      ++..+
T Consensus       465 ~~~~~  469 (700)
T PTZ00216        465 VCCGG  469 (700)
T ss_pred             ccccc
Confidence            75443

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.44  E-value=5.5e-13  Score=104.87  Aligned_cols=117  Identities=16%  Similarity=0.161  Sum_probs=89.2

Q ss_pred             CCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CC--CHHHHHHHHH--hcCceEEEecHHHHHHHHhCCC---
Q 032003           11 ELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KF--DLEMFLRAIE--KHRVTHIWVVPPLILALAKHGL---   80 (149)
Q Consensus        11 ~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~--~~~~~~~~l~--~~~~t~~~~~P~~~~~l~~~~~---   80 (149)
                      +.+ ++.++.+|++|..|+.. .+.++..|+++++..  .+  +|..+++.++  +++++.+..+|+++..+.....   
T Consensus       232 ~~~~~~~l~~~Pl~h~~g~~~-~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~  310 (612)
T PRK12476        232 LDRNTHGVSWLPLYHDMGLSM-IGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA  310 (612)
T ss_pred             CCCCceEEEeCCcccccchHH-HHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh
Confidence            444 89999999999999844 444444555555543  23  8999999994  5889999999998888765321   


Q ss_pred             -CCcCCCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeeccccccccc
Q 032003           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYES  129 (149)
Q Consensus        81 -~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~  129 (149)
                       ....+++++| +.+||+++++++.+++++.++     ..++.+.||+||++...
T Consensus       311 ~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  364 (612)
T PRK12476        311 EGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFV  364 (612)
T ss_pred             hhcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheee
Confidence             1234678899 999999999999999998772     23589999999987443

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.42  E-value=3.9e-12  Score=96.73  Aligned_cols=110  Identities=25%  Similarity=0.262  Sum_probs=90.2

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++.+ |+++...|++|.+|+ ..++.++..|+++++.+.   ..+.+.+  .++|.+..+|+++..+......    ..
T Consensus       171 ~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~  240 (458)
T PRK09029        171 MPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVRDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PL  240 (458)
T ss_pred             CCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeCCh---HHHHHHH--hhceeeecChHHHHHHHhcccc----CC
Confidence            44555 899999999999998 566788999999998874   4466666  3789999999999999876432    34


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+.+||+++++++.+++.+. + .++++.||+||++...+
T Consensus       241 ~l~~i~~gG~~~~~~~~~~~~~~-g-~~~~~~YG~tE~~~~~~  281 (458)
T PRK09029        241 SLKAVLLGGAAIPVELTEQAEQQ-G-IRCWCGYGLTEMASTVC  281 (458)
T ss_pred             cceEEEECCCCCCHHHHHHHHHc-C-CcEeccccccccCccee
Confidence            69999999999999999998765 4 89999999999986544

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.41  E-value=1.1e-12  Score=102.28  Aligned_cols=114  Identities=13%  Similarity=0.231  Sum_probs=90.5

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHH-HhC---CCCCcCC
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILAL-AKH---GLVKKFD   85 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l-~~~---~~~~~~~   85 (149)
                      +++++..|++|..|+...++.++..|+++++.++    .+|+.+++.+++++++.. .+|.++..+ ...   ......+
T Consensus       208 ~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~  286 (578)
T PRK05850        208 TTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLD  286 (578)
T ss_pred             ceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcc
Confidence            7899999999999987788999999999998864    279999999999999865 555554333 321   1112345


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeecccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYE  128 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~  128 (149)
                      ++++|.+.+||+++++++.+++.+.++     +.++++.||+||++..
T Consensus       287 ~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  334 (578)
T PRK05850        287 LGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVY  334 (578)
T ss_pred             hhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhh
Confidence            778999999999999999999988763     2468999999998743

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=99.41  E-value=6.5e-12  Score=97.78  Aligned_cols=115  Identities=22%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhC-------C-------
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH-------G-------   79 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~-------~-------   79 (149)
                      |+++..+|++|++--... ...+..|+++-+.. -|+..+.+.+++.++|.+.++|.++.++.+.       .       
T Consensus       303 dv~lSyLPLAHi~er~~~-~~~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l  380 (691)
T KOG1256|consen  303 DVYLSYLPLAHIFERVVE-LYTFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKL  380 (691)
T ss_pred             ceEEEeCcHHHHHHHHHH-HhHhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHH
Confidence            899999999999998554 45568899998887 4889999999999999999999998887541       0       


Q ss_pred             --------C---C-CcCCC-------------------CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           80 --------L---V-KKFDL-------------------SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        80 --------~---~-~~~~l-------------------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                              .   . .....                   ..+|.+.+|++|+++++...++..++ +++.++||+|||++.
T Consensus       381 ~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~eGYGlTEts~g  459 (691)
T KOG1256|consen  381 FNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLEGYGLTETSAG  459 (691)
T ss_pred             HHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeeecccccccCCc
Confidence                    0   0 00011                   14889999999999999999999987 999999999999854


Q ss_pred             ccc
Q 032003          129 SCN  131 (149)
Q Consensus       129 ~~~  131 (149)
                      ++.
T Consensus       460 ~~~  462 (691)
T KOG1256|consen  460 TTL  462 (691)
T ss_pred             eEe
Confidence            443

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.37  E-value=5.8e-12  Score=97.67  Aligned_cols=116  Identities=22%  Similarity=0.222  Sum_probs=93.8

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCC----CCCcCC
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----LVKKFD   85 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~----~~~~~~   85 (149)
                      |++++.+|++|..|+...+..++..|+++++.+.    .++..+.+.+++++++.+..+|..+..+.+..    .....+
T Consensus       195 d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  274 (545)
T PRK07768        195 DVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFD  274 (545)
T ss_pred             ceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCC
Confidence            7999999999999987677788999999988763    37888999999999999888888776665421    112356


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHh---CCC--CcEEeeeccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKN---VPS--ATVIQVVQFEHLYYES  129 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~---~~~--~~i~~~YG~tE~~~~~  129 (149)
                      ++++|.+..||+++++++.+++.+.   ++.  .++++.||+||++..+
T Consensus       275 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~  323 (545)
T PRK07768        275 LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAV  323 (545)
T ss_pred             chheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEE
Confidence            7899999999999999999998774   431  3599999999998544

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.36  E-value=7.9e-12  Score=95.12  Aligned_cols=115  Identities=17%  Similarity=0.060  Sum_probs=90.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC--C
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D   85 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~   85 (149)
                      .++++ |+++...|..+..|......++...|++++...  ..+..++.++++++|.+.++|+.+..+++.......  .
T Consensus       125 ~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~--~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~  202 (445)
T TIGR03335       125 QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG--KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA  202 (445)
T ss_pred             cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC--chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence            36677 899999898887665344466778888876443  235678999999999999999988877654322221  2


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY  126 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~  126 (149)
                      ..++|.+++||+++++++.+++.+.++ +++++.||+||++
T Consensus       203 ~~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~~YG~TE~~  242 (445)
T TIGR03335       203 ESSIRRLVVGGESFADESRNYVEELWG-CEVYNTYGSTEGT  242 (445)
T ss_pred             cCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEecCChhhhh
Confidence            357999999999999999999999887 9999999999986

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.35  E-value=5.6e-12  Score=98.57  Aligned_cols=123  Identities=15%  Similarity=0.152  Sum_probs=95.9

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--   80 (149)
                      .+++.+ |+++..+|++|+.|+...++.++..|+++++.+.    .++..+++.+++++++....+|..+..+.....  
T Consensus       212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~  291 (579)
T PRK09192        212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK  291 (579)
T ss_pred             cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence            456666 9999999999999997677788999999977652    368999999999999987776665554443221  


Q ss_pred             -CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCC-----CcEEeeecccccccccc
Q 032003           81 -VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-----ATVIQVVQFEHLYYESC  130 (149)
Q Consensus        81 -~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-----~~i~~~YG~tE~~~~~~  130 (149)
                       ....+++++|.+.+||+++++++.+++.+.++.     ..+++.||+||++...+
T Consensus       292 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~  347 (579)
T PRK09192        292 DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVS  347 (579)
T ss_pred             cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEe
Confidence             123567899999999999999999999887641     35899999999975443

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.01  E-value=2.6e-09  Score=80.04  Aligned_cols=119  Identities=19%  Similarity=0.162  Sum_probs=88.4

Q ss_pred             ccCCCC-cEEEEecch-hhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc--
Q 032003            8 TAGELD-YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--   83 (149)
                      ..|... |++..+... .+..|+ ....++-..|++++-..+-+.+..+++++++++|.+.++|+.+..+++..+...  
T Consensus       128 ~~g~~~gd~v~~~~~yGl~tgg~-~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~  206 (438)
T COG1541         128 SAGVRKGDKVQNAYGYGLFTGGL-GLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGID  206 (438)
T ss_pred             HccCCCCCEEEEEeeeccccCCc-hhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCC
Confidence            345555 655554432 122222 223445556777765555678999999999999999999999999987655442  


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      .+-.++|.+++|+|+.++++.+.+.++++ ++.++.||.||..+.
T Consensus       207 ~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diYGltE~~g~  250 (438)
T COG1541         207 PDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIYGLTEGFGP  250 (438)
T ss_pred             hhhcceeEEEEecccCCHHHHHHHHHHhC-CceeeccccccccCC
Confidence            23357999999999999999999999998 999999999998543

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.00  E-value=7.2e-09  Score=82.06  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=98.6

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .++.+. |+++...++.++.+. +.++.++..|+++++.+.   .+++.+.+.++++++|.+..+|..+..++.......
T Consensus       401 ~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~  479 (642)
T COG1020         401 RFGLDADDRVLALASLSFDASV-FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD  479 (642)
T ss_pred             hcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc
Confidence            356666 899999999999988 899999999999999873   589999999999999999999999999987622211


Q ss_pred             --CCCCCceEEEEecCCCCHHHHHHHHHhCC-CCcEEeeeccccccc
Q 032003           84 --FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQVVQFEHLYY  127 (149)
Q Consensus        84 --~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~i~~~YG~tE~~~  127 (149)
                        .....+|.+.+||++++.++.+.+.+..+ ...+.+.||+||+..
T Consensus       480 ~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~  526 (642)
T COG1020         480 LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATL  526 (642)
T ss_pred             ccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhh
Confidence              22234899999999999999998887754 368999999999653

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=98.99  E-value=4.6e-10  Score=85.38  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=84.6

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC-----C---HHHHHHHHHhcCceEEEecHHHHHHHHhCC-
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF-----D---LEMFLRAIEKHRVTHIWVVPPLILALAKHG-   79 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~-----~---~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~-   79 (149)
                      .+.+ |+++..+|+.|++-+... +.++..|+++=-.+..     +   .+.----+.+.++|.+.++|..+.++.+.- 
T Consensus       275 ~lg~~D~yi~yLPLAHIlEl~aE-~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl  353 (678)
T KOG1180|consen  275 ELGPKDRYIAYLPLAHILELTAE-LVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVL  353 (678)
T ss_pred             ccCCCceEEEechHHHHHHHHHH-HHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHH
Confidence            4455 999999999999999776 4667777776544321     1   011112346789999999999998875410 


Q ss_pred             -----------------------CCCcCCC------------------CCceEEEEecCCCCHHHHHHHHHhCCCCcEEe
Q 032003           80 -----------------------LVKKFDL------------------SSLKLVGSGAAPLGKELMEECAKNVPSATVIQ  118 (149)
Q Consensus        80 -----------------------~~~~~~l------------------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~  118 (149)
                                             ......+                  -.+|++++||+|+++++.+.+.-.+. +++.+
T Consensus       354 ~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C-~Pv~q  432 (678)
T KOG1180|consen  354 SKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC-CPVLQ  432 (678)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc-ccccc
Confidence                                   0000000                  15999999999999999988877765 79999


Q ss_pred             eecccccccccc
Q 032003          119 VVQFEHLYYESC  130 (149)
Q Consensus       119 ~YG~tE~~~~~~  130 (149)
                      +||.||++..++
T Consensus       433 GYGLTEtca~~t  444 (678)
T KOG1180|consen  433 GYGLTETCAAAT  444 (678)
T ss_pred             cccccchhcccE
Confidence            999999975554

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=98.89  E-value=6.6e-09  Score=78.67  Aligned_cols=80  Identities=19%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccc
Q 032003           48 FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYY  127 (149)
Q Consensus        48 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~  127 (149)
                      .+.+..++.+++++++.+.+.|+.+..+++..+....+ .+++.++++||+++++..+.+++.|| +++++.||+|| |.
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tE-g~  250 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATE-GF  250 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCch-hh
Confidence            35788999999999999999999999998754333323 36889999999999999999999998 99999999999 54


Q ss_pred             ccc
Q 032003          128 ESC  130 (149)
Q Consensus       128 ~~~  130 (149)
                      +++
T Consensus       251 la~  253 (430)
T TIGR02304       251 LAS  253 (430)
T ss_pred             eEE
Confidence            443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.89  E-value=4.1e-09  Score=73.58  Aligned_cols=55  Identities=24%  Similarity=0.225  Sum_probs=50.9

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCce
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT   63 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t   63 (149)
                      ..++++ |+++ .+|++|++|+...++.++..|+++++.++|+++.+++.++++|+|
T Consensus       172 ~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       172 AAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             hcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            456676 9999 999999999988899999999999999999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PTZ00297 pantothenate kinase; Provisional

Probab=98.42  E-value=1.5e-06  Score=74.26  Aligned_cols=60  Identities=22%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHh
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK   77 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~   77 (149)
                      |+++..+|++|+++. ...+..+..|+++..   ++++.+++.++++++|++.++|.++..+.+
T Consensus       646 D~~Ls~LPLaHI~er-~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~  705 (1452)
T PTZ00297        646 HLMVHFTPFAMLFNR-VFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRL  705 (1452)
T ss_pred             CEEEEechHHHHHHH-HHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHH
Confidence            999999999999996 456778899999863   478999999999999999999999998754

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=94.82  E-value=0.3  Score=36.75  Aligned_cols=96  Identities=16%  Similarity=0.186  Sum_probs=57.4

Q ss_pred             HhcCCceEEEcC-CCCHHHHHHHH----HhcCceEEEecHHHHHHHHhCCCCCc--CCCC-CceEEEEecC------CCC
Q 032003           35 QLQKGSCIILMA-KFDLEMFLRAI----EKHRVTHIWVVPPLILALAKHGLVKK--FDLS-SLKLVGSGAA------PLG  100 (149)
Q Consensus        35 ~l~~G~~~v~~~-~~~~~~~~~~l----~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~-~lr~~~~gg~------~~~  100 (149)
                      ....+..-.+-+ .++.+.+.+.+    ++.++..++++|.++-.++...+..+  ..++ ..+.+..||-      .++
T Consensus       161 ~~~~~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~  240 (365)
T PF04443_consen  161 ELFFGSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVS  240 (365)
T ss_pred             hcccCceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccC
Confidence            344555544432 46777666655    45668889998887766654322222  2333 3445555653      354


Q ss_pred             H-HHHHHHHHhCCC---CcEEeeecccccccccc
Q 032003          101 K-ELMEECAKNVPS---ATVIQVVQFEHLYYESC  130 (149)
Q Consensus       101 ~-~~~~~~~~~~~~---~~i~~~YG~tE~~~~~~  130 (149)
                      + +..+.+.+.+|.   -++++.|||||.....+
T Consensus       241 r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~  274 (365)
T PF04443_consen  241 REEFYARLQEVFGVIPIENIYDMYGMTELNSQAY  274 (365)
T ss_pred             HHHHHHHHHHHHCCCCHHHeeeeeeccccchhhe
Confidence            4 555667777873   37999999999765444

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.31  E-value=3.2  Score=35.63  Aligned_cols=98  Identities=16%  Similarity=0.043  Sum_probs=63.7

Q ss_pred             HHhHh-cCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCC-------------cCCCCCceEEEE
Q 032003           32 TCGQL-QKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK-------------KFDLSSLKLVGS   94 (149)
Q Consensus        32 ~~~~l-~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~-------------~~~l~~lr~~~~   94 (149)
                      .+.++ .+|..+..+..   -++.++.+.+++++++..+.+|++.+.++......             ....+.++....
T Consensus       255 ~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~  334 (1032)
T KOG1178|consen  255 FIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVL  334 (1032)
T ss_pred             HHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeee
Confidence            34444 44544444432   24899999999999999999999987776533220             111236899999


Q ss_pred             ecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           95 GAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        95 gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      +|++...++...+...+...-...-|+.+|..+-.
T Consensus       335 ~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~  369 (1032)
T KOG1178|consen  335 GGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLV  369 (1032)
T ss_pred             cCCccchhhhhhhhhcccceeeeecccCCCCccce
Confidence            99999998887554444322233347777765433

>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family

Probab=80.61  E-value=16  Score=25.04  Aligned_cols=88  Identities=13%  Similarity=0.153  Sum_probs=53.6

Q ss_pred             cEEEEecch--hhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHH------HHHHHhCCCCCcC
Q 032003           14 YVFLCVLPL--FHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPL------ILALAKHGLVKKF   84 (149)
Q Consensus        14 ~~~l~~~p~--~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~------~~~l~~~~~~~~~   84 (149)
                      .+++..++-  .|..|.......--..|-.++.. ....++.+.+.++++++..+...-++      +.++.+.-  +..
T Consensus        85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l--~~~  162 (197)
T TIGR02370        85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKL--KEE  162 (197)
T ss_pred             CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHH--HHc
Confidence            344445444  78888854444444667777755 46688999999999999887764321      12222211  111


Q ss_pred             CC-CCceEEEEecCCCCHHHH
Q 032003           85 DL-SSLKLVGSGAAPLGKELM  104 (149)
Q Consensus        85 ~l-~~lr~~~~gg~~~~~~~~  104 (149)
                      .+ +++ .++.||.+++++..
T Consensus       163 ~~~~~v-~i~vGG~~~~~~~~  182 (197)
T TIGR02370       163 GYRDSV-KFMVGGAPVTQDWA  182 (197)
T ss_pred             CCCCCC-EEEEEChhcCHHHH
Confidence            12 234 47789999987543

This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		6e-21
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		9e-19
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		9e-15
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-14
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-13
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-13
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-13
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-13
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		2e-07
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		4e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		8e-05

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 328
Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + Q
Sbjct: 329 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V LCVLP+FH++ L +++ CG L+ G+ I++M KF++   L  IEK++V+   VVPP+++
Sbjct: 225 VILCVLPMFHIYALNSIMLCG-LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMM 283
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           ++AK   + K DLSSL+++ SG APLGKEL +      P A + Q
Sbjct: 284 SIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ 328

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
             LAK  L+ K+DLS+L  + SG APL KE+ E  AK
Sbjct: 298 SFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  I+LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 268 DTAILTVIPFHHGFGM-FTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF 326
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
              AK  LV K+DLS+L  + SG APL KE+ E  AK 
Sbjct: 327 SFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKR 364

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
              AK  L+ K+DLS+L  + SG APL KE+ E  AK
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
              AK  L+ K+DLS+L  + SG APL KE+ E  AK
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
              AK  L+ K+DLS+L  + SG APL KE+ E  AK
Sbjct: 298 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T++ +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVP 112
           K  L+ K+DLS+L  + SG APL KE+ E  A+  N+P
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVP 112
           K  L+ K+DLS+L  + SG APL KE+ E  A+  N+P
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVP 112
           K  L+ K+DLS+L  + SG APL KE+ E  A+  N+P
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLP 336

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D  +L VLP++H+ GL+V+    ++ G  + ++ KF+ E  L  I+  R+THI +VP  +
Sbjct: 204 DTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQTL 262
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVP 112
             L + GL + ++L  + L   G A L   ++E   + N+P
Sbjct: 263 NWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP 300

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++   Q Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLMLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261
Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT 115
           +       +  L+SL+ V     P   E +E      P+AT
Sbjct: 262 ILDQAAPAQ--LASLRAVTGLDTP---ETIERFEATCPNAT 297

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 21  PLFHV--FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK- 77
           P FH   FGL  +    +  G+  ++   F+ E     IEK++ T  W VPP +  L   
Sbjct: 229 PXFHSAEFGLVNLX---VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 78  -HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLK 136
                K +D S LK+  +GA P+   L+E+  K               L  E CN+ +L+
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLK---------------LAAEKCNNPRLR 330

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	5e-49
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-48
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-46
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	4e-46
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-39
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-29
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-27
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-27
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	5e-27
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	5e-27
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	6e-27
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	6e-27
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	8e-27
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-24
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-23
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	8e-13
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-11
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-11
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	4e-11
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-09
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	6e-09
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	8e-09
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	1e-07
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-06
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-06
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-05
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-04
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	5e-04
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	6e-04

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  167 bits (424), Expect = 5e-49
 Identities = 46/104 (44%), Positives = 71/104 (68%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   +VPP++LA
Sbjct: 272 VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLA 331

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +AK    +K+DLSS+++V SGAAPLGKEL +      P+A + Q
Sbjct: 332 IAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ 375

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  162 bits (412), Expect = 2e-48
 Identities = 45/104 (43%), Positives = 68/104 (65%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++   L  IEK++V+   VVPP++++
Sbjct: 225 VILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +AK   + K DLSSL+++ SG APLGKEL +      P A + Q
Sbjct: 285 IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ 328

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  157 bits (399), Expect = 1e-46
 Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   
Sbjct: 238 AVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           L K  L+ K+DLS+L  + SG APL KE+ E  A+      V Q
Sbjct: 297 LNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ 340

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  156 bits (396), Expect = 4e-46
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 236 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + Q
Sbjct: 295 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ 338

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  137 bits (348), Expect = 3e-39
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             +  +P+FH     ++    +  G+  ++M  F+ EM    IEK++ T  W VPP +  
Sbjct: 223 TIVGCMPMFHSAEFGLVNLM-VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNV 281

Query: 75  LAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQ 118
           L        K +D S LK+  +GA P+   L+E+  K      N P     Q
Sbjct: 282 LVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQ 333

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  111 bits (279), Expect = 1e-29
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  LP+FHV  L  +      +G  +I M +FD       I + RV     VP ++  
Sbjct: 213 RLLLPLPMFHVAALTTVIFS-AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 271

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
           + +     + D    +   +G AP+ + L++  A    +  V+Q 
Sbjct: 272 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQG 314

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  104 bits (262), Expect = 3e-27
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LP++H  GL V +   L     +I + KFD +  L  +   R T +  VP     
Sbjct: 198 VLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTR 255

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
           L +   + K     ++L  SG+APL  +   E + 
Sbjct: 256 LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSA 290

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  104 bits (262), Expect = 3e-27
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
                   ++ DLSSL+++  G A    E     
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV 318

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  104 bits (261), Expect = 5e-27
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
             LC LP  H F L+     G L  G C+++    +       I++H+V    +VP  ++
Sbjct: 234 RLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
              +     K  + SLKL+  G A   + L  + 
Sbjct: 294 MWLEKAAQYKDQIQSLKLLQVGGASFPESLARQV 327

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  103 bits (260), Expect = 5e-27
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 3/98 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++     Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLML-TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP 112
           +          L+SL+ V     P   E  E    N  
Sbjct: 262 ILDQ--AAPAQLASLRAVTGLDTPETIERFEATCPNAT 297

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  103 bits (260), Expect = 6e-27
 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQV 119
           LA           L SL+ V    A +   ++E   +++P    + +
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNI 303

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  103 bits (259), Expect = 6e-27
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            +L VLP++H+ GL+V+    + +G  + ++ KF+ E  L  I+  R+THI +VP  +  
Sbjct: 206 NWLSVLPIYHISGLSVLLRA-VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNW 264

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
           L + G     +  +L+ +  G A L   ++E   +
Sbjct: 265 LMQQG---LHEPYNLQKILLGGAKLSATMIETALQ 296

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  103 bits (259), Expect = 8e-27
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
            +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + 
Sbjct: 227 RYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVS 286

Query: 74  ALAKHGL--VKKFDLSSLKLVGSGAAPLGKELMEEC 107
              +  +    +  L+SLKL+  G A L   L    
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATLAARI 322

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 96.5 bits (241), Expect = 2e-24
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHR 256

Query: 75  LAKHGLVKKF---DLSSLKLVGSGAAPLGKELMEE 106
           +A+           L+  +L+ SG+A L     E 
Sbjct: 257 IAETLPADPELAKALAGARLLVSGSAALPVHDHER 291

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 94.2 bits (235), Expect = 1e-23
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V      LF  +GL       L  G+  ILMA +   +     + +HR T  + VP L  
Sbjct: 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYA 286

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
            +     +      ++++  S    L +E+ E 
Sbjct: 287 NMLVSPNLPARADVAIRICTSAGEALPREIGER 319

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 63.6 bits (154), Expect = 8e-13
 Identities = 15/125 (12%), Positives = 30/125 (24%), Gaps = 22/125 (17%)

Query: 15  VFLCVLPLF-HVFGLAVITCGQLQKGSCIIL---------------------MAKFDLEM 52
             L  +P   H+ G           G    +                          ++ 
Sbjct: 137 NTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQ 196

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP 112
               +    +  +   PP++  L K   V      SL  +  G   L  + ++  A  + 
Sbjct: 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEIL 256

Query: 113 SATVI 117
                
Sbjct: 257 PDCEF 261

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           +   +     +  +          G+C  +  + KFD  + L+ +  + +    +  P++
Sbjct: 249 IMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-SMMGAPIV 307

Query: 73  L-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELME 105
              L +  L   +    L+   +    L  E +E
Sbjct: 308 YRMLLQQDL-SSYKFPHLQNCVTVGESLLPETLE 340

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 9/111 (8%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL----EMFLRAIEK 59
            D +     +   +  LP +H  GL +  C  +  G   +L +          ++  +  
Sbjct: 221 ADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMAS 280

Query: 60  HRVTHIWVVPP----LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
                    P     L         +   DL ++  + SG+  +    ++ 
Sbjct: 281 DFHAFSA-APNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKR 330

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 58.7 bits (143), Expect = 4e-11
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
           GQ   G  + +    +F+ +  L    K+ VT  +  PP I   L K  L   ++ S+LK
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDL-SHYNFSTLK 344

Query: 91  LVGSGAAPLGKELME 105
                  PL  E+  
Sbjct: 345 YAVVAGEPLNPEVFN 359

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 15  VFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           V L V+P+FHV       A    G       ++   + D    +   +   VT    VP 
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVG----AKQVLPGPRLDPASLVELFDGEGVTFTAGVPT 276

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           + LALA +       L +L+ +  G +   + L+  
Sbjct: 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIAR 312

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEM----FLRAIEKHRVTHIWVVPP----L 71
           LP  H  GL       +  G   I+M+ F        +L+ I K++ T     P      
Sbjct: 215 LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISG-SPNFAYDY 273

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
            +   +    +  DLSS     +GA P+ +E ME 
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGS 94
           I++H+VT  +V P  +  L + G   ++   L SL+ +GS
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGS 391

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGS 94
           ++KH+V  ++  P  I AL   G   ++  D SSL+++GS
Sbjct: 346 VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGS 385

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 3/85 (3%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K      +    ++E+  +      P             +  L ++K  
Sbjct: 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTF 266

Query: 93  GSGAAPLGKELMEECAKNVPSATVI 117
                 L  E+  +  +  P AT++
Sbjct: 267 LFCGEVLPNEVARKLIERFPKATIM 291

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 44.8 bits (107), Expect = 2e-06
 Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 3/85 (3%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           LQ G  +  + K      ++    ++K  +      P  +          +  L      
Sbjct: 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTF 265

Query: 93  GSGAAPLGKELMEECAKNVPSATVI 117
                 L   + +   +  P A + 
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIF 290

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 12/94 (12%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           +   + +I+  +    D E     I +  V  ++    L   L   G      +  L+ +
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED---WMKGLRCI 725

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY 126
             G        + +  + +    +I      + Y
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLI------NCY 753

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 3/85 (3%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K    D +     I +  V      P             +  + +L   
Sbjct: 210 LALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHF 269

Query: 93  GSGAAPLGKELMEECAKNVPSATVI 117
                 L      +  +  PSA +I
Sbjct: 270 YFDGEELTVSTARKLFERFPSAKII 294

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 81  VKKFDLSSLKLVGSGAAP-LG-KELME 105
           +KK   +SLKL    +AP L  K  ME
Sbjct: 22  LKKLQ-ASLKLYADDSAPALAIKATME 47

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G+ + ++ K    D   F + I +  +T I + P  ++ L          + S++ +
Sbjct: 245 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTL 298

Query: 93  GSGAAPLGKELMEECAKNVP 112
            +  +     L+ +  + V 
Sbjct: 299 ITAGSATSPSLVNKWKEKVT 318

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 33  CGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
               + G C +   +   L+   R   +  VTH  +VP L+            D   L  
Sbjct: 243 FLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----DAPHLVY 298

Query: 92  VGSGAAPLGKELMEECAK 109
           +G G   +     +  + 
Sbjct: 299 LGVGGEKMTPRTQQIWSS 316

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 9/78 (11%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
           D  +  + I +      W+   L   L          L  L+ + +G   L    +    
Sbjct: 241 DPGVLRQLIGERGADSAWLTASLFNTLVDLDPD---CLGGLRQLLTGGDILSVPHVRRAL 297

Query: 109 KNVPSATVIQVVQFEHLY 126
              P   ++      + Y
Sbjct: 298 LRHPRLHLV------NGY 309

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.85
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.85
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.85
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.82
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.81
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.81
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.81
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.8
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.8
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.8
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.79
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.79
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.79
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.79
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	99.79
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.79
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.79
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.78
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.78
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.77
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.77
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.77
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.76
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.75
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.75
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.75
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.75
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.74
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.74
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.73
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.73
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.7
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.69
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.67
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.65
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.63
3ezx_A	215	MMCP 1, monomethylamine corrinoid protein 1; N ter	84.28

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.85  E-value=2.6e-20  Score=143.23  Aligned_cols=122  Identities=30%  Similarity=0.399  Sum_probs=108.8

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++++ |++++.+|++|++|+...++.++ .|+++++.++++++.+++.++++++|++.++|+++..+++.+.....+++
T Consensus       231 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  309 (548)
T 2d1s_A          231 NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLS  309 (548)
T ss_dssp             CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCT
T ss_pred             cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccccc
Confidence            45566 99999999999999855567777 99999999989999999999999999999999999999987765566789


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  131 (149)
                      ++|.+.+||+++++++.+++++.+|+.++++.||+||++..++.
T Consensus       310 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  353 (548)
T 2d1s_A          310 NLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII  353 (548)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             ceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee
Confidence            99999999999999999999999977889999999999865543

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.85  E-value=3.9e-20  Score=142.20  Aligned_cols=123  Identities=32%  Similarity=0.454  Sum_probs=110.6

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~   88 (149)
                      ++.+ |++++.+|++|++|+ ...+.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.+.....++++
T Consensus       230 ~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~  308 (550)
T 3rix_A          230 QIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSN  308 (550)
T ss_dssp             CCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTT
T ss_pred             cCCCCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCccc
Confidence            4555 999999999999998 67788999999999999999999999999999999999999999999987766778999


Q ss_pred             ceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccc
Q 032003           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDY  133 (149)
Q Consensus        89 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~  133 (149)
                      +|.+.+||+++++++.+++++.++...+++.||+||++..++...
T Consensus       309 lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~  353 (550)
T 3rix_A          309 LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITP  353 (550)
T ss_dssp             CCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC
T ss_pred             ccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCC
Confidence            999999999999999999999998445999999999986655433

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=99.85  E-value=2e-20  Score=143.40  Aligned_cols=121  Identities=37%  Similarity=0.535  Sum_probs=111.3

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++.+ |++++.+|++|++|+...++.++..|+++++.++++++.+++.++++++|++.++|+++..+++.+.....+++
T Consensus       218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  297 (536)
T 3ni2_A          218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS  297 (536)
T ss_dssp             SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCT
T ss_pred             ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCc
Confidence            34555 99999999999999977788999999999999999999999999999999999999999999998776777899


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      ++|.+.+||+++++++.+++++.+|++++++.||+||++.++
T Consensus       298 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~  339 (536)
T 3ni2_A          298 SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVL  339 (536)
T ss_dssp             TCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEE
T ss_pred             cceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhh
Confidence            999999999999999999999999779999999999998544

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.82  E-value=1.4e-19  Score=138.00  Aligned_cols=122  Identities=13%  Similarity=0.088  Sum_probs=110.5

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |++++.+|++|+.++ ..++.++..|+++++.++   ++++.+++.++++++|.+.++|+++..++.......
T Consensus       179 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  257 (512)
T 3fce_A          179 DFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE  257 (512)
T ss_dssp             HTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST
T ss_pred             hcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc
Confidence            356666 999999999999998 678999999999999985   689999999999999999999999999988776667


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++++|.+.+||+++++++.+++.+.++++++++.||+||++..++
T Consensus       258 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  304 (512)
T 3fce_A          258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVT  304 (512)
T ss_dssp             TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSE
T ss_pred             hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhee
Confidence            78899999999999999999999999997799999999999986544

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=99.81  E-value=2.8e-19  Score=140.02  Aligned_cols=123  Identities=20%  Similarity=0.239  Sum_probs=108.2

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--   80 (149)
                      .+++++ |++++..|++|+.|+.+.++.++..|+++++.++    ++++.+++.++++++|++.++|++++.+++...  
T Consensus       292 ~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  371 (652)
T 1pg4_A          292 VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA  371 (652)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG
T ss_pred             hcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc
Confidence            456777 9999999999999987778899999999999874    589999999999999999999999999987653  


Q ss_pred             CCcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeecccccccccc
Q 032003           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESC  130 (149)
Q Consensus        81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~  130 (149)
                      ....+++++|.+.+||+++++++++++++.++.  +++++.||+||++...+
T Consensus       372 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~  423 (652)
T 1pg4_A          372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMI  423 (652)
T ss_dssp             TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSB
T ss_pred             cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccccccee
Confidence            234578999999999999999999999998863  78999999999985544

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.81  E-value=1.5e-19  Score=138.72  Aligned_cols=120  Identities=24%  Similarity=0.285  Sum_probs=107.1

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+++++ |++++.+|++|.+++.. .++.++..|+++++.++++++.+++.++++++|++.++|+++..+++.......+
T Consensus       217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  296 (539)
T 1mdb_A          217 VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD  296 (539)
T ss_dssp             HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC
T ss_pred             hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCC
Confidence            345666 99999999999999854 6889999999999999899999999999999999999999999998765445567


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE  128 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~  128 (149)
                      ++++|.+.+||+++++++.+++++.++ +++++.||+||++..
T Consensus       297 l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~  338 (539)
T 1mdb_A          297 LSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVN  338 (539)
T ss_dssp             CTTCCEEEEESSCCCHHHHTTHHHHTC-SEEEEEEECTTSCEE
T ss_pred             ccceeEEEEcCCCCCHHHHHHHHHHhC-CcEEEEEcCCCCccc
Confidence            899999999999999999999999887 999999999997643

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.81  E-value=2.3e-19  Score=136.74  Aligned_cols=122  Identities=11%  Similarity=0.037  Sum_probs=110.2

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |++++.+|++|+.++ ..++.++..|+++++.+.   ++++.+++.++++++|.+.++|+++..+++.+....
T Consensus       178 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  256 (511)
T 3e7w_A          178 DFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ  256 (511)
T ss_dssp             HSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST
T ss_pred             hcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc
Confidence            345666 999999999999998 678999999999999875   689999999999999999999999999998877667


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++++|.+.+||+++++++.+++++.++++++++.||+||++..++
T Consensus       257 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  303 (511)
T 3e7w_A          257 DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVT  303 (511)
T ss_dssp             TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSE
T ss_pred             ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeee
Confidence            77899999999999999999999999997799999999999985544

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.80  E-value=6.4e-19  Score=138.23  Aligned_cols=123  Identities=19%  Similarity=0.290  Sum_probs=107.8

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--   80 (149)
                      .+++++ |++++..|++|+.|..+.++.++..|+++++.++    ++++.+++.++++++|+++++|++++.+.+...  
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~  377 (663)
T 1ry2_A          298 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY  377 (663)
T ss_dssp             HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS
T ss_pred             hcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc
Confidence            456667 9999999999999987778899999999999864    589999999999999999999999999987654  


Q ss_pred             CCcCCCCCceEEEEecCCCCHHHHHHHHHhCC--CCcEEeeecccccccccc
Q 032003           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQVVQFEHLYYESC  130 (149)
Q Consensus        81 ~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~  130 (149)
                      ....+++++|.+++||+++++++++++++.++  ++++++.||+||++...+
T Consensus       378 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~  429 (663)
T 1ry2_A          378 IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV  429 (663)
T ss_dssp             SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSE
T ss_pred             cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeee
Confidence            23457899999999999999999999999886  378999999999985443

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.80  E-value=8.7e-19  Score=135.61  Aligned_cols=123  Identities=15%  Similarity=0.120  Sum_probs=105.9

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc--CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~--~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      +.++.+ +++++..|++|..+.+..++.++..|+++++.  ++++++.+++.++++++|+++++|++++.+.+.. ....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~  338 (580)
T 3etc_A          260 WQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHY  338 (580)
T ss_dssp             TSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---
T ss_pred             hhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccC
Confidence            345666 89999999999999866678899999999987  4789999999999999999999999999998763 3556


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCND  132 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~  132 (149)
                      +++++|.+.+||+++++++.+++++.++ +++++.||+||++..++..
T Consensus       339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~  385 (580)
T 3etc_A          339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG-IKLMEGFGQTETVVTIATF  385 (580)
T ss_dssp             CCTTCCEEEECSSCCCHHHHHHHHHHHS-CCCEEEECCTTSSCCEECC
T ss_pred             CCccceEEEEccCCCCHHHHHHHHHHhC-CeEecccccccccceeecC
Confidence            7899999999999999999999999887 8999999999998655543

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.80  E-value=9e-19  Score=135.25  Aligned_cols=122  Identities=11%  Similarity=0.116  Sum_probs=107.4

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      .+++++ |++++..|++|+.++...++.++..|+++++.+  .++++.+++.++++++|.+.++|+++..+++.. ....
T Consensus       241 ~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~  319 (570)
T 3c5e_A          241 WTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSY  319 (570)
T ss_dssp             TTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTC
T ss_pred             hcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccc
Confidence            345666 999999999999998657889999999999986  689999999999999999999999999998763 3445


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  131 (149)
                      +++++|.+++||+++++++.+++++.++ +++++.||+||++..++.
T Consensus       320 ~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~  365 (570)
T 3c5e_A          320 KFPHLQNCVTVGESLLPETLENWRAQTG-LDIRESYGQTETGLTCMV  365 (570)
T ss_dssp             CCTTCCEEEEESSCCCHHHHHHHHHHHS-CCCEEEEEETTTEEEEEC
T ss_pred             ccccceEEEEcCCcCCHHHHHHHHHHhC-Cchhhccchhhcccceec
Confidence            6889999999999999999999999886 899999999999865543

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.79  E-value=2.5e-19  Score=137.56  Aligned_cols=122  Identities=22%  Similarity=0.324  Sum_probs=108.7

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+++++ |++++.+|++|.+++.. .++.++..|+++++.++++++.+++.++++++|.+.++|+++..+++.......+
T Consensus       226 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  305 (544)
T 3o83_A          226 ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ  305 (544)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH
T ss_pred             HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc
Confidence            456666 99999999999999854 5789999999999999999999999999999999999999999998876555567


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.+.+||+++++++.+++++.++ +++++.||+||++....
T Consensus       306 ~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~  349 (544)
T 3o83_A          306 IQSLKLLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYT  349 (544)
T ss_dssp             HTTCCEEEEESSCCCHHHHTHHHHHHC-SEEEEEEECTTSCEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEeeeccccccceee
Confidence            889999999999999999999999886 99999999999875443

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.79  E-value=6.6e-19  Score=135.18  Aligned_cols=119  Identities=20%  Similarity=0.204  Sum_probs=103.6

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC-CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      +++++ |++++.+|++|++++ ...+.++..|+++++.+ .++++.+++.++++++|++.++|+++..+++.......++
T Consensus       214 ~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l  292 (541)
T 1v25_A          214 TALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL  292 (541)
T ss_dssp             TCCCTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCC
T ss_pred             ccCCCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcc
Confidence            35556 999999999999998 56788999999999986 4799999999999999999999999999987544344568


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||+++++++.+++ +.++ +++++.||+||++..++
T Consensus       293 ~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~~~~YG~TE~~~~~~  334 (541)
T 1v25_A          293 KTLRRLVVGGSAAPRSLIARF-ERMG-VEVRQGYGLTETSPVVV  334 (541)
T ss_dssp             SSCCEEEECSSCCCHHHHHHH-HHTT-CEEEEEEECGGGSSEEE
T ss_pred             hhccEEEECCCCCCHHHHHHH-HHhC-Cceeeccccccccccee
Confidence            899999999999999999999 6665 89999999999985544

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.79  E-value=6e-19  Score=143.37  Aligned_cols=122  Identities=38%  Similarity=0.591  Sum_probs=111.5

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      +++.+ |++++.+|++|++++...++.++..|+++++.++++++.+++.++++++|++.++|+++..+++.+.....+++
T Consensus       265 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  344 (979)
T 3tsy_A          265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLS  344 (979)
T ss_dssp             SCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCT
T ss_pred             ccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCcc
Confidence            44555 99999999999999977788999999999999999999999999999999999999999999988766667889


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+.+||+++++++.+++++.+|++++++.||+||++.+++
T Consensus       345 ~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  387 (979)
T 3tsy_A          345 SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLA  387 (979)
T ss_dssp             TCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHH
Confidence            9999999999999999999999997799999999999985543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.79  E-value=6.5e-19  Score=129.34  Aligned_cols=122  Identities=16%  Similarity=0.136  Sum_probs=102.6

Q ss_pred             ccCCCC-cEEEEecch-hhHHHHHHHHHhHhcCCceEEEcCCCCHH-----------------------HHHHHHHhcCc
Q 032003            8 TAGELD-YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLE-----------------------MFLRAIEKHRV   62 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~-----------------------~~~~~l~~~~~   62 (149)
                      ..++++ |++++..|+ +|+.|+ ...+.++..|+ +++..+++|.                       .+++.++++++
T Consensus       129 ~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  206 (369)
T 3hgu_A          129 HRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDI  206 (369)
T ss_dssp             TSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred             hhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence            345566 899999999 999998 55566688898 6666677887                       88889999999


Q ss_pred             eEEEecHHHHHHHHhCCCCCcCCCCCceEEEEecCCCCHHHHHHHH-HhCCCCcEEeeeccccccccccc
Q 032003           63 THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        63 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~-~~~~~~~i~~~YG~tE~~~~~~~  131 (149)
                      |.+.++|+++..+++.+.....+++++|.+.+||+++++++.++++ +.+|++++++.||+||+++++..
T Consensus       207 t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~  276 (369)
T 3hgu_A          207 RFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRS  276 (369)
T ss_dssp             EEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEE
T ss_pred             CEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceec
Confidence            9999999999999876433334567899999999999999999999 89966999999999999865543

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=99.79  E-value=7.8e-19  Score=133.73  Aligned_cols=123  Identities=24%  Similarity=0.311  Sum_probs=109.5

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+++++ |++++.+|++|.+|+....+.++..|+++++.++++++.+++.++  ++|.+.++|+++..+++.+.....++
T Consensus       190 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~  267 (503)
T 4fuq_A          190 YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETT  267 (503)
T ss_dssp             HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTT
T ss_pred             HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccch
Confidence            356666 999999999999997566778999999999999999999999998  89999999999999999877667778


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDY  133 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~  133 (149)
                      +++|.+.+||+++++++.+++.+.++ .++++.||+||++..+..+.
T Consensus       268 ~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~  313 (503)
T 4fuq_A          268 GHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMTETNMNTSNPY  313 (503)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHHHS-CCEEECCEETTTEECBCCCS
T ss_pred             hhcEEEEECCCCCCHHHHHHHHHHhC-CCccceEcccccCcccccCC
Confidence            89999999999999999999999887 89999999999987665443

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.79  E-value=1.1e-18  Score=132.88  Aligned_cols=117  Identities=21%  Similarity=0.343  Sum_probs=104.6

Q ss_pred             cCC--CC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCC--CCc
Q 032003            9 AGE--LD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKK   83 (149)
Q Consensus         9 ~~~--~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~   83 (149)
                      +++  .+ |++++.+|++|+.|+...++.++..|+++++.++++++.+++.++++++|++.++|+++..+++.+.  ...
T Consensus       189 ~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  268 (504)
T 1t5h_X          189 VGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS  268 (504)
T ss_dssp             TCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCC
T ss_pred             hCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccccc
Confidence            455  44 9999999999999986678899999999999999999999999999999999999999999987542  234


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY  126 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~  126 (149)
                      .+++++|.+.+||+++++++.+++++.+| .++++.||+||++
T Consensus       269 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~  310 (504)
T 1t5h_X          269 LKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAM  310 (504)
T ss_dssp             CCCTTCCEEEECCTTCCHHHHHHHHHHCC-SEEEEEEEETTTE
T ss_pred             ccCccccEEEEcCCcCCHHHHHHHHHhcC-cceeeeecccccc
Confidence            56889999999999999999999999997 8899999999994

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.79  E-value=2.5e-18  Score=131.49  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+++.+ |++++.+|++|+.|+...++.++..|+++++. +.++++.+++.++++++|++.++|+++..+++.+......
T Consensus       219 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  298 (529)
T 2v7b_A          219 ILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA  298 (529)
T ss_dssp             CCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG
T ss_pred             ccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc
Confidence            345666 99999999999999866677899999999988 5789999999999999999999999999998865443331


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      ..++|.+.+||+++++++.+++++.++ +++++.||+||++.+.
T Consensus       299 ~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~  341 (529)
T 2v7b_A          299 DVAIRICTSAGEALPREIGERFTAHFG-CEILDGIGSTEMLHIF  341 (529)
T ss_dssp             GCCCCEEEECSSCCCHHHHHHHHHHHS-CCEEEEEECTTTSSEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHhC-CceeeeEchhhcCcee
Confidence            237999999999999999999999886 8999999999996443

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.78  E-value=1.5e-18  Score=132.56  Aligned_cols=120  Identities=22%  Similarity=0.258  Sum_probs=104.6

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+++++ |++++.+|++|++|+...+ .++..|+++++.++++++.+++.++++++|.+.++|+++..+.+.+.....++
T Consensus       205 ~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  283 (517)
T 3r44_A          205 TIDVRYRDRLLLPLPMFHVAALTTVI-FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDA  283 (517)
T ss_dssp             HSCCCTTCEEEECSCTTSHHHHHHHH-HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCC
T ss_pred             hcCCCCCCEEEEeCchHHHHHHHHHH-HHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCC
Confidence            346666 9999999999999994444 44449999999999999999999999999999999999999988766556678


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+.+||+++++++.+++++.  ++++++.||+||++..++
T Consensus       284 ~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~  325 (517)
T 3r44_A          284 PDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGT  325 (517)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEE
T ss_pred             CcccEEEECCCCCCHHHHHHHHhc--CCcEEEeeccccccccee
Confidence            899999999999999999999887  489999999999975443

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.78  E-value=5.2e-19  Score=129.68  Aligned_cols=118  Identities=13%  Similarity=0.089  Sum_probs=100.1

Q ss_pred             cccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            7 ETAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         7 ~~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      ..+++++ |++++.+|++|++|+ ..++.++..|+++++.++ .+   .++.++++++|++.++|+++..+++.+. ...
T Consensus        71 ~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~  145 (358)
T 4gs5_A           71 KALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSA-TSG  145 (358)
T ss_dssp             HHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGG
T ss_pred             HHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhcccc-ccc
Confidence            3456777 999999999999998 667888999999988863 33   3567899999999999999999998764 445


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  131 (149)
                      +++++|.+.+||+++++++.+++++. + +++++.||+||++..++.
T Consensus       146 ~l~~lr~v~~gG~~l~~~~~~~~~~~-~-~~~~~~YG~TEt~~~~~~  190 (358)
T 4gs5_A          146 QVDRLGKVLLGGAPVNHALAMQISDL-A-MPVYQSYGMTETVSHVAL  190 (358)
T ss_dssp             GGGGGCSEEECSSCCCHHHHHHHHTC-S-SCEEEEEECGGGSSEEEE
T ss_pred             cCCcceEEEEcccCCCchheeccccc-C-ceEEeccccccccceeec
Confidence            78999999999999999999999874 4 899999999999865543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.77  E-value=5.4e-18  Score=128.82  Aligned_cols=116  Identities=24%  Similarity=0.374  Sum_probs=102.0

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+++++ |++++.+|++|++|+ ..++.++..|+++++.++++++.+++.++++++|.+.++|+++..+++......   
T Consensus       198 ~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---  273 (501)
T 3ipl_A          198 SLGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---  273 (501)
T ss_dssp             HTCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---
T ss_pred             hhCCCccCEEEEeCcHHHHHHH-HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---
Confidence            356666 999999999999999 558899999999999999999999999999999999999999999987654322   


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      .++|.+.+||+++++++.+++++. + +++++.||+||++...
T Consensus       274 ~~lr~i~~gG~~l~~~~~~~~~~~-~-~~~~~~YG~TE~~~~~  314 (501)
T 3ipl_A          274 YNLQKILLGGAKLSATMIETALQY-N-LPIYNSFGMTETCSQF  314 (501)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHT-T-CCEEEEEEEGGGTEEE
T ss_pred             CcccEEEEeCCCCCHHHHHHHHHh-C-CCEeccccccccccce
Confidence            279999999999999999999874 4 8999999999987543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.77  E-value=2e-18  Score=129.30  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=102.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC--C
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--D   85 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~--~   85 (149)
                      .++++ |+++...|++|..+....++.++..|+++++.+..+++.+++.++++++|++.++|+++..+++.......  +
T Consensus       125 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  204 (436)
T 3qov_A          125 VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR  204 (436)
T ss_dssp             TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT
T ss_pred             cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc
Confidence            36666 99999999877666656778899999999999888999999999999999999999999999875433332  3


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY  126 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~  126 (149)
                      ++++|.+++||+++++++.+++++.++ +++++.||+||++
T Consensus       205 ~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~  244 (436)
T 3qov_A          205 ETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSFGMTEMN  244 (436)
T ss_dssp             SSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEEEGGGT
T ss_pred             cCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecCcchhhc
Confidence            788999999999999999999999986 9999999999994

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.77  E-value=7.7e-18  Score=131.25  Aligned_cols=119  Identities=17%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      .+++.+ |++++..|++|+.++ +.++.++..|+++++.+  .++++.+.+.++++++|.+.++|+++..+++..   ..
T Consensus       198 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~  273 (620)
T 4dg8_A          198 FLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PD  273 (620)
T ss_dssp             GGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GG
T ss_pred             hhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hh
Confidence            456666 999999999999998 77899999999999975  579999999999999999999999999998642   34


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++++|.+.+||++++++..+++.+.+++++++|.||+||++..++
T Consensus       274 ~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  319 (620)
T 4dg8_A          274 CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTC  319 (620)
T ss_dssp             GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred             hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheE
Confidence            6789999999999999999999888887799999999999985543

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.76  E-value=2.1e-18  Score=130.18  Aligned_cols=118  Identities=14%  Similarity=0.213  Sum_probs=102.0

Q ss_pred             CcEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhcCceEEEecHHHHHHHHhC----CCCCcC
Q 032003           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKH----GLVKKF   84 (149)
Q Consensus        13 ~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~----~~~~~~   84 (149)
                      .|++++.+|++|++|+...++.++..|+++++.++.    +++.+++.++++++| +..+|+++..++..    +.....
T Consensus       230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~  308 (480)
T 3t5a_A          230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR  308 (480)
T ss_dssp             TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred             CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence            489999999999999877889999999999998753    899999999999999 78888888887653    333456


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeeccccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~~  131 (149)
                      +++++|.+.+||+++++++.+++++.++     +.++.+.||+||++..++.
T Consensus       309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  360 (480)
T 3t5a_A          309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVAT  360 (480)
T ss_dssp             CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEE
T ss_pred             chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEee
Confidence            7899999999999999999999999883     3579999999999866554

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.75  E-value=5.1e-18  Score=130.42  Aligned_cols=122  Identities=24%  Similarity=0.327  Sum_probs=106.3

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc--C
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--F   84 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~   84 (149)
                      .+++++ |++++.+|++|++++. .++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+++......  .
T Consensus       215 ~~~~~~~d~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  293 (549)
T 3g7s_A          215 ATGLSHMDTIVGCMPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTY  293 (549)
T ss_dssp             HHCCCTTCEEECCSCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCC
T ss_pred             HcCCCCCCEEEEeCcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccC
Confidence            346666 9999999999999984 47889999999999999999999999999999999999999999987543333  5


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHh----CC--CCcEEeeecccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKN----VP--SATVIQVVQFEHLYYESC  130 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~----~~--~~~i~~~YG~tE~~~~~~  130 (149)
                      +++++|.+.+||+++++++.+++.+.    ++  +.++.+.||+||++..++
T Consensus       294 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  345 (549)
T 3g7s_A          294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT  345 (549)
T ss_dssp             CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred             CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence            68899999999999999999999887    54  378999999999986554

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.75  E-value=2.4e-17  Score=125.84  Aligned_cols=121  Identities=12%  Similarity=0.050  Sum_probs=107.8

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      ++..+ +++++..|++|..++ ..++.++..|+++++.++   .+++.+++.++++++|.+.++|+++..+.........
T Consensus       183 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  261 (521)
T 3l8c_A          183 FDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQA  261 (521)
T ss_dssp             TCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTT
T ss_pred             cCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccc
Confidence            44555 899999999999998 678899999999999875   3899999999999999999999999999887766667


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++++|.+.+||+++++++.+++.+.++++++++.||+||++..++
T Consensus       262 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~  307 (521)
T 3l8c_A          262 KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALS  307 (521)
T ss_dssp             TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSE
T ss_pred             cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhc
Confidence            7899999999999999999999999997799999999999986543

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.75  E-value=1.2e-17  Score=125.12  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=100.5

Q ss_pred             ccCCCC-cEEEEecch-hhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            8 TAGELD-YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .+++++ |+++...|+ +|..++ ...+.++..|+++++.+..+++.+++.++++++|++.++|+++..+++.......+
T Consensus       128 ~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~  206 (437)
T 2y27_A          128 AAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD  206 (437)
T ss_dssp             HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred             HcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC
Confidence            356666 999999998 788887 56788999999999888889999999999999999999999999998653222222


Q ss_pred             --CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003           86 --LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY  126 (149)
Q Consensus        86 --l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~  126 (149)
                        ++++|.+.+||+++++++.+++++.++ +++++.||+||++
T Consensus       207 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~  248 (437)
T 2y27_A          207 PVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIYGLSEVM  248 (437)
T ss_dssp             GGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEEETTTT
T ss_pred             cccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecCCchhhc
Confidence              478999999999999999999998886 9999999999973

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.75  E-value=2.1e-17  Score=127.56  Aligned_cols=118  Identities=16%  Similarity=0.063  Sum_probs=104.1

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~   85 (149)
                      .++++ |++++.+|++|..+. ..++.++..|+++++.+  .++++.+++.++++++|.+.++|+++..+++...   .+
T Consensus       249 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~  324 (570)
T 4gr5_A          249 AGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EA  324 (570)
T ss_dssp             SCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GG
T ss_pred             cCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hh
Confidence            45666 999999999998776 67889999999999986  4789999999999999999999999999987532   35


Q ss_pred             CCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        86 l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++++|.+.+||++++++..+++.+.++++++++.||+||++..++
T Consensus       325 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  369 (570)
T 4gr5_A          325 FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT  369 (570)
T ss_dssp             GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred             CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence            789999999999999999999999987799999999999975544

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.74  E-value=4.5e-18  Score=131.41  Aligned_cols=124  Identities=20%  Similarity=0.143  Sum_probs=106.0

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC----CHHHHHHHHHhcCceEEEecHHHHHHHHhC---C
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKH---G   79 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~---~   79 (149)
                      .+++++ |++++.+|++|+.|+...++.++..|+++++.+++    +++.+++.++++++|.+.++|+++..+++.   .
T Consensus       202 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  281 (590)
T 3kxw_A          202 SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE  281 (590)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG
T ss_pred             hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh
Confidence            356666 99999999999999955588999999999999764    899999999999999999999999988764   2


Q ss_pred             CCCcCCCCCceEEEEecCCCCHHHHHHHHHhCC-----CCcEEeeeccccccccccc
Q 032003           80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        80 ~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-----~~~i~~~YG~tE~~~~~~~  131 (149)
                      .....+++++|.+.+||+++++++.+++++.++     +.++++.||+||++..++.
T Consensus       282 ~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~  338 (590)
T 3kxw_A          282 KKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTG  338 (590)
T ss_dssp             GGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred             hccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeec
Confidence            234567899999999999999999999998873     3579999999999866553

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.74  E-value=1.7e-17  Score=129.20  Aligned_cols=122  Identities=22%  Similarity=0.317  Sum_probs=105.8

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHH-HHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC--Cc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~   83 (149)
                      .+++++ |++++.+|++|.+++.. .++.++..|+++++.++.++..+++.++++++|++.++|+++..+++....  ..
T Consensus       219 ~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  298 (617)
T 3rg2_A          219 ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR  298 (617)
T ss_dssp             HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT
T ss_pred             hcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc
Confidence            346666 99999999999998843 588999999999999889999999999999999999999999998764322  22


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++++|.+.+||+++++++.+++.+.++ ++++|.||+||++..++
T Consensus       299 ~~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~  344 (617)
T 3rg2_A          299 AQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAEGLVNYT  344 (617)
T ss_dssp             TTTTTCCEEEEESSCCCHHHHHHHHHHTC-SEEEEEEEETTEEEEEC
T ss_pred             ccCCCccEEEEcCCcCCHHHHHHHHHHhC-CcEEEEeccCcceeecc
Confidence            36889999999999999999999999987 99999999999875444

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.73  E-value=1.8e-17  Score=124.35  Aligned_cols=117  Identities=21%  Similarity=0.233  Sum_probs=100.3

Q ss_pred             ccCCCC-cEEEEecch-hhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC-
Q 032003            8 TAGELD-YVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF-   84 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~-~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-   84 (149)
                      .+++++ |+++...|+ +|..++ ...+.++..|+++++.+..+++.+++.++++++|++.++|+++..+++....... 
T Consensus       130 ~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~  208 (443)
T 2y4o_A          130 AAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD  208 (443)
T ss_dssp             HTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC
T ss_pred             HcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC
Confidence            356666 999999998 577776 5678899999999998888999999999999999999999999999865322222 


Q ss_pred             -CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccc
Q 032003           85 -DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLY  126 (149)
Q Consensus        85 -~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~  126 (149)
                       +++++|.+++||+++++++.+++++.++ +++++.||+||++
T Consensus       209 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~  250 (443)
T 2y4o_A          209 PAESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIYGLSEVM  250 (443)
T ss_dssp             GGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEEEETTTT
T ss_pred             cccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEeccCchhhc
Confidence             2478999999999999999999999886 9999999999973

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.73  E-value=3e-18  Score=130.57  Aligned_cols=123  Identities=24%  Similarity=0.267  Sum_probs=105.8

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC---Cc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV---KK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~---~~   83 (149)
                      .+++++ |++++.+|++|..|+...++.++..|+++++.++++++.+++.+ ++++|++.++|+++..+++....   ..
T Consensus       190 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~  268 (505)
T 3nyq_A          190 AWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELA  268 (505)
T ss_dssp             HHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHH
T ss_pred             HhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhh
Confidence            346666 99999999999999877789999999999999999999999999 88999999999999999873211   12


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCND  132 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~  132 (149)
                      .+++++|.+.+||+++++++.+++++.++ .+++|.||+||++..++..
T Consensus       269 ~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~  316 (505)
T 3nyq_A          269 KALAGARLLVSGSAALPVHDHERIAAATG-RRVIERYGMTETLMNTSVR  316 (505)
T ss_dssp             HHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEEEEEETTTEEEEECC
T ss_pred             cccccceEEEECCCCCCHHHHHHHHHhcC-CeeecccchhhcccccccC
Confidence            34678999999999999999999998886 8999999999998665543

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.69  E-value=1.4e-16  Score=121.33  Aligned_cols=117  Identities=29%  Similarity=0.328  Sum_probs=97.5

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      .+++++ |++++.+|++|++|+.. .+..+..|++.++..+++++.+++.++++++|.+.++|+++..+++..  ...++
T Consensus       195 ~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l  271 (509)
T 3ivr_A          195 AWRLTEADVNLGMLPLFHVTGLGL-MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQL  271 (509)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGG
T ss_pred             hhCCCCCcEEEEeCCCcchhHHHH-HHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccch
Confidence            456666 99999999999999944 445455555555555889999999999999999999999999998865  34568


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      +++|.+..+|++   +..+++.+.++++++++.||+||++..++
T Consensus       272 ~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  312 (509)
T 3ivr_A          272 ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST  312 (509)
T ss_dssp             TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEE
T ss_pred             hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccc
Confidence            899999999987   88889999997799999999999986554

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.67  E-value=4.1e-16  Score=120.29  Aligned_cols=113  Identities=12%  Similarity=0.090  Sum_probs=98.2

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |++++..|++|..++ +.++.++..|+++++.++   .+++.+++.++++++|++.++|+++..+..      
T Consensus       217 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------  289 (563)
T 1amu_A          217 SLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------  289 (563)
T ss_dssp             TSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------
T ss_pred             hcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------
Confidence            356666 999999999999998 678899999999999875   689999999999999999999999876643      


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+++++|.+.+||+++++++.+++++.   +++++.||+||++..++
T Consensus       290 ~~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~  333 (563)
T 1amu_A          290 ERILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICAT  333 (563)
T ss_dssp             TTCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSE
T ss_pred             cccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhhe
Confidence            246789999999999999999998764   78999999999986544

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.65  E-value=6.7e-16  Score=128.64  Aligned_cols=119  Identities=13%  Similarity=0.052  Sum_probs=104.0

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCc
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~   83 (149)
                      .+++++ |+++...|++|+.+. +.++.++..|+++++.+.   .+++.+.+.++++++|++.++|+++..+.+..   .
T Consensus       641 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~  716 (1304)
T 2vsq_A          641 YMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---E  716 (1304)
T ss_dssp             SSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---S
T ss_pred             hcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---h
Confidence            345566 999999999999998 789999999999999873   68999999999999999999999999997642   2


Q ss_pred             CCCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        84 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ..++++|.+++||+++++++.+++.+.+++.+++|.||+||++..++
T Consensus       717 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  763 (1304)
T 2vsq_A          717 DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFAT  763 (1304)
T ss_dssp             HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSE
T ss_pred             hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHhe
Confidence            24678999999999999999999998887688999999999986544

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.63  E-value=1.8e-15  Score=116.51  Aligned_cols=115  Identities=16%  Similarity=0.135  Sum_probs=98.5

Q ss_pred             CCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCC-CHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCC
Q 032003           10 GELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (149)
Q Consensus        10 ~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~-~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~   87 (149)
                      .+.. +++++..|++|..++ ..++.++..|+++++.++. .++.+.+.++++++|++.++|+++..+...    ..+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~  294 (562)
T 3ite_A          220 ELGGVGKFLCLASRAFDVHI-GEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAP  294 (562)
T ss_dssp             GCTTTCEEECCSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGST
T ss_pred             ccCcCceEEEecCchhhhhH-HHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccC
Confidence            3445 899999999999987 6788999999999998754 367889999999999999999999887543    34688


Q ss_pred             CceEEEEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        88 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      ++|.+.+||+++++++.+++++.++ +++++.||+||++..++
T Consensus       295 ~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~  336 (562)
T 3ite_A          295 HLVYLGVGGEKMTPRTQQIWSSSDR-VALVNVYGPTEVTIGCS  336 (562)
T ss_dssp             TCCEEEEESSCCCHHHHHHHTTCSS-CEEEEEECCGGGCSCSE
T ss_pred             ceEEEEEecCCCCHHHHHHHhhCCC-cEEEEeeccchheeeee
Confidence            9999999999999999999988765 89999999999986544

>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}

Probab=84.28  E-value=7.3  Score=26.07  Aligned_cols=82  Identities=20%  Similarity=0.209  Sum_probs=50.6

Q ss_pred             hhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEe------cHHH--HHHHHhCCCCCcCCC-CCceEE
Q 032003           23 FHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWV------VPPL--ILALAKHGLVKKFDL-SSLKLV   92 (149)
Q Consensus        23 ~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~------~P~~--~~~l~~~~~~~~~~l-~~lr~~   92 (149)
                      .|.-|.......--.+|-.++-. ....++.+.+.++++++..+..      +++.  +.++.+.-  +...+ ..+ .+
T Consensus       104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l--~~~~~~~~v-~v  180 (215)
T 3ezx_A          104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRL--NEEKLRDSV-KC  180 (215)
T ss_dssp             CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHH--HHTTCGGGS-EE
T ss_pred             hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHH--HHcCCCCCC-EE
Confidence            68888855544555677777665 4568999999999999987666      2221  12221111  11112 134 36


Q ss_pred             EEecCCCCHHHHHHH
Q 032003           93 GSGAAPLGKELMEEC  107 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~  107 (149)
                      +.||.+++++..+++
T Consensus       181 ~vGG~~~~~~~a~~i  195 (215)
T 3ezx_A          181 MFGGAPVSDKWIEEI  195 (215)
T ss_dssp             EEESSSCCHHHHHHH
T ss_pred             EEECCCCCHHHHHHh
Confidence            789999998765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	7e-22
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-18
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	6e-11

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 88.2 bits (218), Expect = 7e-22
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 296 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 355

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
            I AL   G   ++  D SSL+++GS   P+  E  E   K +     
Sbjct: 356 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.7 bits (193), Expect = 1e-18
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           VF     +  + G   +  G L  G   ++        +   +   I++H+VT  +V P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYE 128
            +  L + G   ++   L SL+ +GS   P+  E+ E  ++ +    +  V  +      
Sbjct: 343 ALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 402

Query: 129 SCNDYKL 135
           S     L
Sbjct: 403 SHLVTPL 409

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 56.8 bits (136), Expect = 6e-11
 Identities = 21/97 (21%), Positives = 38/97 (39%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + 
Sbjct: 212 KDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 271

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
           LALA +       L +L+ +  G +   + L+    +
Sbjct: 272 LALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER 308

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.82
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.75
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.61
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.6
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.27
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.21
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.2

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.82  E-value=9.7e-20  Score=140.58  Aligned_cols=124  Identities=20%  Similarity=0.226  Sum_probs=108.0

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-   81 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-   81 (149)
                      .+++++ |++++..|++|+.|+.+.++.+|..|+++++.++    ++++.+++.++++++|++.++|++++.+++.... 
T Consensus       288 ~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~  367 (643)
T d1pg4a_         288 VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA  367 (643)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG
T ss_pred             hhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchh
Confidence            456666 9999999999999987778899999999999753    4899999999999999999999999999876532 


Q ss_pred             -CcCCCCCceEEEEecCCCCHHHHHHHHHhCC--CCcEEeeeccccccccccc
Q 032003           82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        82 -~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~  131 (149)
                       ...++++||.+.+||+++++++.+++.+.++  ++++++.||+||+++..+.
T Consensus       368 ~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~  420 (643)
T d1pg4a_         368 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT  420 (643)
T ss_dssp             TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred             ccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEe
Confidence             4567899999999999999999999999985  3779999999999865543

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=6.8e-18  Score=129.79  Aligned_cols=124  Identities=19%  Similarity=0.278  Sum_probs=107.2

Q ss_pred             ccCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCC-
Q 032003            8 TAGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-   81 (149)
Q Consensus         8 ~~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-   81 (149)
                      ..+.++ |++++.+|++|+.|..+.++.++..|+++++.++    ++++.+++.++++++|.+.++|++++.+.+.+.. 
T Consensus       275 ~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  354 (640)
T d1ry2a_         275 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY  354 (640)
T ss_dssp             HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS
T ss_pred             hcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccc
Confidence            345566 9999999999999987788899999999998764    3889999999999999999999999999876433 


Q ss_pred             -CcCCCCCceEEEEecCCCCHHHHHHHHHhCCC--CcEEeeeccccccccccc
Q 032003           82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        82 -~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~~  131 (149)
                       ...++++||.+.+||+++++++.+++++.+|.  .++++.||+||++.....
T Consensus       355 ~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~  407 (640)
T d1ry2a_         355 IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT  407 (640)
T ss_dssp             SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred             cccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccccccc
Confidence             45678999999999999999999999999874  569999999999865543

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=2.7e-15  Score=112.55  Aligned_cols=114  Identities=21%  Similarity=0.199  Sum_probs=97.3

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEc-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~   92 (149)
                      |++++.+|++|.+++... +..+..|+++++. +.+++..+.+.++++++|.+.++|+++..+++.......+++++|.+
T Consensus       213 d~~~~~~p~~~~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~  291 (534)
T d1v25a_         213 DVVLPVVPMFHVNAWCLP-YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRL  291 (534)
T ss_dssp             CEEEECSCTTSHHHHTHH-HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEE
T ss_pred             cccccccchhhhcccccc-ceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEE
Confidence            899999999999999554 4555556655555 57899999999999999999999999999987665566788999999


Q ss_pred             EEecCCCCHHHHHHHHHhCCCCcEEeeecccccccccc
Q 032003           93 GSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESC  130 (149)
Q Consensus        93 ~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~  130 (149)
                      .+||++++++..+++++. + .++.+.||+||++..+.
T Consensus       292 ~~gG~~~~~~~~~~~~~~-~-~~i~~~yG~te~~~~~~  327 (534)
T d1v25a_         292 VVGGSAAPRSLIARFERM-G-VEVRQGYGLTETSPVVV  327 (534)
T ss_dssp             EECSSCCCHHHHHHHHHT-T-CEEEEEEECGGGSSEEE
T ss_pred             EEecCCCCHHHHHHHHHh-C-Ceeeeecccccccccee
Confidence            999999999999998865 3 78999999999986554

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.60  E-value=1.1e-14  Score=108.97  Aligned_cols=124  Identities=31%  Similarity=0.438  Sum_probs=107.3

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCCCCceEEE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG   93 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~   93 (149)
                      +++++.+|++|..+. ...+..+..++..+.....++......+.++++|.+..+|..+..+++.......+++++|.+.
T Consensus       232 ~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~  310 (541)
T d1lcia_         232 TAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIA  310 (541)
T ss_dssp             CEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEE
T ss_pred             ccccccccccccccc-cccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEE
Confidence            899999999999998 5667778888888888888999999999999999999999999999988877777889999999


Q ss_pred             EecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccccccCCCC
Q 032003           94 SGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCNDYKLKRF  138 (149)
Q Consensus        94 ~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~  138 (149)
                      +||++++++..+++.+.++..++++.||+||++..++........
T Consensus       311 ~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  355 (541)
T d1lcia_         311 SGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDK  355 (541)
T ss_dssp             CTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---
T ss_pred             ecccccccccccccccccCCceeeecCCccccCceEEecCcccCC
Confidence            999999999999999998866789999999998665544333333

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.27  E-value=2.2e-11  Score=89.53  Aligned_cols=117  Identities=20%  Similarity=0.328  Sum_probs=101.2

Q ss_pred             cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCC--CCCcCCCCCceE
Q 032003           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKL   91 (149)
Q Consensus        14 ~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~--~~~~~~l~~lr~   91 (149)
                      ++.+..+|++|..+.....+.+...++.+++.+.+++..+...+..++++.+..+|+.+..+....  ......++++|.
T Consensus       197 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~  276 (503)
T d3cw9a1         197 NVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH  276 (503)
T ss_dssp             CEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCE
T ss_pred             ccccccCccccccccccccccccccccccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEE
Confidence            889999999998888777788889999999999999999999999999999999999988775432  123455788999


Q ss_pred             EEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003           92 VGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        92 ~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  131 (149)
                      +.+||++++++..+++.+.++ ..+.+.||+||++.....
T Consensus       277 i~~gG~~~~~~~~~~~~~~~~-~~~~~~yg~~e~~~~~~~  315 (503)
T d3cw9a1         277 VTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYM  315 (503)
T ss_dssp             EEECSSCCCHHHHHHHHHHCC-SEEEEEEEETTTEEEEEE
T ss_pred             EEecccccccccccccccccc-ccccccccccccceeeee
Confidence            999999999999999999987 789999999999865543

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.21  E-value=7.8e-11  Score=87.39  Aligned_cols=113  Identities=12%  Similarity=0.082  Sum_probs=93.6

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHHhHhcCCceEEEcCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~   84 (149)
                      .+... |++++..|++|..++ ..++.++..|+++++.+.   .+.....+.+..+.++.+..+|.....      ....
T Consensus       202 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  274 (514)
T d1amua_         202 LNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPE  274 (514)
T ss_dssp             SCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTT
T ss_pred             ccccccccccceecccccccc-ccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc------cccc
Confidence            44555 899999999999998 677888999999998763   577888999999999999999976532      2345


Q ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccccc
Q 032003           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYESCN  131 (149)
Q Consensus        85 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  131 (149)
                      ++++++.+..||+++++++.+++.+.   ..+++.||+||++...+.
T Consensus       275 ~~~~l~~~~~~G~~~~~~~~~~~~~~---~~~~~~yG~tE~~~~~~~  318 (514)
T d1amua_         275 RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATT  318 (514)
T ss_dssp             TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEE
T ss_pred             ccccccEEEEecccCCHHHhhhhccc---eeEEEeeccccCceeeee
Confidence            68889999999999999999887653   779999999999866543

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.20  E-value=4.2e-11  Score=89.04  Aligned_cols=120  Identities=24%  Similarity=0.286  Sum_probs=100.4

Q ss_pred             cCCCC-cEEEEecchhhHHHHHHHHH-hHhcCCceEEEcCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhCCCCCcCCC
Q 032003            9 AGELD-YVFLCVLPLFHVFGLAVITC-GQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (149)
Q Consensus         9 ~~~~~-~~~l~~~p~~h~~g~~~~~~-~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l   86 (149)
                      +++.+ |++++..|++|.+++...+. ..+..|.+++..+.+++..+.+.+++++++.+..+|..+..+..........+
T Consensus       218 ~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (536)
T d1mdba_         218 CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDL  297 (536)
T ss_dssp             HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCC
T ss_pred             cccccccccccccccccccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccccccc
Confidence            45566 99999999999999744444 44455677777788999999999999999999999999999877655566678


Q ss_pred             CCceEEEEecCCCCHHHHHHHHHhCCCCcEEeeeccccccccc
Q 032003           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQVVQFEHLYYES  129 (149)
Q Consensus        87 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  129 (149)
                      ++++.+.+||++++++..+++.+.+| ......||.+|.+...
T Consensus       298 ~~~~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  339 (536)
T d1mdba_         298 SSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNY  339 (536)
T ss_dssp             TTCCEEEEESSCCCHHHHTTHHHHTC-SEEEEEEECTTSCEEE
T ss_pred             CcceeEEEeccccccccccchhhccC-ceeeeccccccccccc
Confidence            89999999999999999999999998 8888889988876433