Citrus Sinensis ID: 032013

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLIKCIFF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHcccccccccEEcccccccccEEEccccccEEEEEccccccHHHHHHHccEEEEEEcEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEcccccccccccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHcccccHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGDLEKVKNEALEIIGqfenlprlvvfdldytlwpfyceccyedeipylypHAKGILEALKEKGIHVAvasrspapdiAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLIKCIFF
Flexible Loop (DISEMBL)
MGDLEKVKNEALEIigqfenlprlVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLIKCIFF
Low Complexity Region (SEG)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRlsccimciifflfffsisafilfVDLFCFMYAAAYVGCDLYVYKRLIKCIFF
Disordered region (IsUnstruct)
**********ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLIKCIF*
Disordered Region (DISOPRED)
**********ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLIKCIFF
Disordered Region (DISEMBL)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLIKCIFF
Disordered Region (DISPRO)
**DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLIKCIFF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLIKCIFF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9D967	164	Magnesium-dependent phosp	yes	no	0.362	0.329	0.362	7e-05
Q86V88	176	Magnesium-dependent phosp	yes	no	0.436	0.369	0.325	0.0002
O94279	172	Putative magnesium-depend	yes	no	0.503	0.436	0.333	0.0003
P40081	178	Putative magnesium-depend	yes	no	0.516	0.432	0.292	0.0003

>sp|Q9D967|MGDP1_MOUSE Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 15/69 (21%)

Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L  L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62

Query: 65 IHVAVASRS 73
          + VA ASR+
Sbjct: 63 VPVAAASRT 71

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 8

>sp|Q86V88|MGDP1_HUMAN Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 15/80 (18%)

Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L+ L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLG 62

Query: 65 IHVAVASRSPAPDIAKTFLH 84
          +  A ASR+   + A   L 
Sbjct: 63 VPGAAASRTSEIEGANQLLE 82

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|O94279|MGDP1_SCHPO Putative magnesium-dependent phosphatase P8B7.31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.31 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 21/96 (21%)

Query: 22  PRLVVFDLDYTLWPFYCEC------------------CYEDEIPYLYPHAKGILEALKEK 63
           P+ VVFDLDYTLWP + +                    Y  EI + Y    GIL+ L+ +
Sbjct: 8   PKCVVFDLDYTLWPLWIDTHVTAPFKPSKNDPGVLIDKYGTEICF-YSDITGILQELRNQ 66

Query: 64  GIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPMVR 97
            + + VASR+ AP  AK  L+  K+ I     P + 
Sbjct: 67  KVTLCVASRTCAPKYAKQALNLMKVPIDGSLKPAIE 102

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P40081|MGDP1_YEAST Putative magnesium-dependent phosphatase YER134C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YER134C PE=1 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 22/99 (22%)

Query: 22  PRLVVFDLDYTLWPFYCEC--------------------CYEDEIPYLYPHAKGILEALK 61
           P +  FDLDYT+WP YC+                     C +     +Y     IL  LK
Sbjct: 5   PDVAAFDLDYTIWPCYCDTHLHGPFKPVKSSNGEVLTIICRDGYELTIYKDIPRILGDLK 64

Query: 62  EKGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPMVRL 98
           + G+ +  ASR+ AP+IA+  L   K+    +  P+  L
Sbjct: 65  DNGVKLMTASRTWAPEIAQEILKIFKVKYAGVVTPLANL 103

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
255563310	189	Magnesium-dependent phosphatase, putativ	0.617	0.486	0.752	7e-34
225465793	165	PREDICTED: magnesium-dependent phosphata	0.590	0.533	0.761	3e-31
4587681	151	hypothetical protein [Arabidopsis thalia	0.617	0.609	0.695	7e-31
79555268	190	haloacid dehalogenase-like hydrolase dom	0.597	0.468	0.707	2e-30
388504702	176	unknown [Lotus japonicus]	0.624	0.528	0.688	3e-30
115455203	173	Os03g0737400 [Oryza sativa Japonica Grou	0.617	0.531	0.709	3e-30
224035303	129	unknown [Zea mays] gi|413933131|gb|AFW67	0.771	0.891	0.598	3e-30
222625757	327	hypothetical protein OsJ_12493 [Oryza sa	0.617	0.281	0.709	4e-30
388515721	176	unknown [Lotus japonicus]	0.624	0.528	0.688	4e-30
449438224	188	PREDICTED: magnesium-dependent phosphata	0.597	0.473	0.707	6e-30

>gi|255563310|ref|XP_002522658.1| Magnesium-dependent phosphatase, putative [Ricinus communis] gi|223538134|gb|EEF39745.1| Magnesium-dependent phosphatase, putative [Ricinus communis]

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 79/93 (84%), Gaps = 1/93 (1%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          MGD EK+K+EAL+IIG F+ LPRLVVFDLDYTLWPFYCEC  + E+P LYPHAKGIL AL
Sbjct: 1  MGD-EKIKDEALQIIGMFQMLPRLVVFDLDYTLWPFYCECRSKREMPSLYPHAKGILYAL 59

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          K+KGI VA+ASRSP PDIA TFL KL + SMFV
Sbjct: 60 KDKGIDVAIASRSPTPDIANTFLDKLSLKSMFV 92

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465793|ref|XP_002269091.1| PREDICTED: magnesium-dependent phosphatase 1 [Vitis vinifera] gi|296087423|emb|CBI34012.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 75/88 (85%)

Query: 6  KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI 65
          +VK EAL+IIG  + LPRLVVFDLDYTLWPFYCEC  + E+P LYPHA+GIL ALKEKGI
Sbjct: 5  RVKEEALQIIGLCQVLPRLVVFDLDYTLWPFYCECRSKREMPSLYPHAEGILYALKEKGI 64

Query: 66 HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
           +A+ASRSP PDIAKTFL KLGI SMFV
Sbjct: 65 DMAIASRSPTPDIAKTFLDKLGIKSMFV 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4587681|gb|AAD25851.1| hypothetical protein [Arabidopsis thaliana]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 74/92 (80%)

Query: 5  EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
          EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct: 4  EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
          I +A+ASRSP  DIA TFL KL I  MFV  V
Sbjct: 64 IEMAIASRSPTSDIANTFLDKLNIKPMFVAKV 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79555268|ref|NP_179027.2| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gi|48310074|gb|AAT41748.1| At2g14110 [Arabidopsis thaliana] gi|50198845|gb|AAT70452.1| At2g14110 [Arabidopsis thaliana] gi|330251187|gb|AEC06281.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 73/89 (82%)

Query: 5  EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
          EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct: 4  EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          I +A+ASRSP  DIA TFL KL I  MFV
Sbjct: 64 IEMAIASRSPTSDIANTFLDKLNIKPMFV 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504702|gb|AFK40417.1| unknown [Lotus japonicus]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 75/93 (80%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          M D+EKVK EAL+++G F+ LPRLVVFDLDYTLWPFYCEC  + + P LYPH KGI+ AL
Sbjct: 1  MEDMEKVKAEALQMMGVFQVLPRLVVFDLDYTLWPFYCECRSKRDTPSLYPHVKGIMYAL 60

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          K +GI VA+AS+SP PDIA TFL KL I SMFV
Sbjct: 61 KGEGIDVAIASKSPTPDIATTFLDKLSISSMFV 93

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115455203|ref|NP_001051202.1| Os03g0737400 [Oryza sativa Japonica Group] gi|29788863|gb|AAP03409.1| unknown protein [Oryza sativa Japonica Group] gi|37999990|gb|AAR07077.1| unknown protein [Oryza sativa Japonica Group] gi|108710967|gb|ABF98762.1| magnesium-dependent phosphatase-1 family protein, expressed [Oryza sativa Japonica Group] gi|113549673|dbj|BAF13116.1| Os03g0737400 [Oryza sativa Japonica Group] gi|215686587|dbj|BAG88840.1| unnamed protein product [Oryza sativa Japonica Group] gi|218193717|gb|EEC76144.1| hypothetical protein OsI_13434 [Oryza sativa Indica Group]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 76/93 (81%), Gaps = 1/93 (1%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          MGD E+VK EAL+I+G F+ LPRLVVFDLDYTLWPFYCEC  + E P LY HAKGI+ AL
Sbjct: 1  MGD-ERVKAEALQILGLFQALPRLVVFDLDYTLWPFYCECRSKRESPSLYRHAKGIMFAL 59

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          +EKGI +A+ASRSP PDIAK F+ KL I SMFV
Sbjct: 60 REKGIDMAIASRSPTPDIAKVFIDKLEIKSMFV 92

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224035303|gb|ACN36727.1| unknown [Zea mays] gi|413933131|gb|AFW67682.1| hypothetical protein ZEAMMB73_293867 [Zea mays]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 85/117 (72%), Gaps = 2/117 (1%)

Query: 1   MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
           M D E+VK EAL+I+G F+ LPRLVVFDLDYTLWPFYCEC  + + P L+ HA+GI+ AL
Sbjct: 1   MSD-ERVKAEALQILGLFQVLPRLVVFDLDYTLWPFYCECRSKRDSPSLFRHARGIMYAL 59

Query: 61  KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAF 117
           KEKGI +A+ASRSP PDIAK FL KL   SMFV  VR+      +IF     S+SA+
Sbjct: 60  KEKGIDMAIASRSPTPDIAKVFLDKLEFQSMFVAQVRI-LPQPAVIFVWVVVSLSAY 115

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222625757|gb|EEE59889.1| hypothetical protein OsJ_12493 [Oryza sativa Japonica Group]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 76/93 (81%), Gaps = 1/93 (1%)

Query: 1   MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
           MGD E+VK EAL+I+G F+ LPRLVVFDLDYTLWPFYCEC  + E P LY HAKGI+ AL
Sbjct: 155 MGD-ERVKAEALQILGLFQALPRLVVFDLDYTLWPFYCECRSKRESPSLYRHAKGIMFAL 213

Query: 61  KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
           +EKGI +A+ASRSP PDIAK F+ KL I SMFV
Sbjct: 214 REKGIDMAIASRSPTPDIAKVFIDKLEIKSMFV 246

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515721|gb|AFK45922.1| unknown [Lotus japonicus]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 75/93 (80%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          M D+EKVK EAL+++G F+ LPRLVVFDLDYTLWPFYCEC  + + P LYPH KGI+ AL
Sbjct: 1  MEDVEKVKAEALQMMGVFQVLPRLVVFDLDYTLWPFYCECRSKRDTPSLYPHVKGIMYAL 60

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          K +GI VA+AS+SP PDIA TFL KL I SMFV
Sbjct: 61 KGEGIDVAIASKSPTPDIATTFLDKLSISSMFV 93

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438224|ref|XP_004136889.1| PREDICTED: magnesium-dependent phosphatase 1-like [Cucumis sativus] gi|449478847|ref|XP_004155433.1| PREDICTED: magnesium-dependent phosphatase 1-like [Cucumis sativus]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 74/89 (83%)

Query: 5  EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
          + VK EAL+IIG F+ LP+LVVFDLDYTLWPFYCEC  + E+P +YPHAK IL ALK+KG
Sbjct: 4  DTVKAEALQIIGMFQVLPKLVVFDLDYTLWPFYCECRSKREMPSMYPHAKSILYALKDKG 63

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          I +A+ASRSP  DIAKTF+ KLGI SMFV
Sbjct: 64 IDLAIASRSPTSDIAKTFIGKLGIESMFV 92

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2059440	190	AT2G14110 "AT2G14110" [Arabido	0.597	0.468	0.707	6.2e-30
ASPGD|ASPL0000029748	215	AN5512 [Emericella nidulans (t	0.456	0.316	0.392	3.6e-09
UNIPROTKB|F1SGN7	164	LOC100520440 "Uncharacterized	0.503	0.457	0.344	4.3e-06
CGD|CAL0000216	175	orf19.6929 [Candida albicans (	0.442	0.377	0.337	9.4e-06
UNIPROTKB|Q59SU0	175	CaO19.14191 "Putative uncharac	0.442	0.377	0.337	9.4e-06
UNIPROTKB|F1MXF2	164	MDP-1 "Uncharacterized protein	0.489	0.445	0.329	1.5e-05
POMBASE|SPBP8B7.31	172	SPBP8B7.31 "acid phosphatase (	0.120	0.104	0.666	2.9e-05
RGD|1311147	164	Mdp1 "magnesium-dependent phos	0.476	0.432	0.344	3e-05
MGI|MGI:1915131	164	Mdp1 "magnesium-dependent phos	0.489	0.445	0.318	6.6e-05
SGD|S000000936	178	YER134C "Magnesium-dependent a	0.120	0.101	0.611	7e-05

TAIR|locus:2059440 AT2G14110 "AT2G14110" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/89 (70%), Positives = 73/89 (82%)

Query:     5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
             EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct:     4 EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query:    65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             I +A+ASRSP  DIA TFL KL I  MFV
Sbjct:    64 IEMAIASRSPTSDIANTFLDKLNIKPMFV 92

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000029748 AN5512 [Emericella nidulans (taxid:162425)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 33/84 (39%), Positives = 47/84 (55%)

Query:    21 LPRLVVFDLDYTLWPFYCEC--------------CYE--DEIPYLYPHAKGILEALKEKG 64
             LP+L+ FDLDYTLWPF+ +               C +  +E    YPH   IL + K + 
Sbjct:    29 LPKLIAFDLDYTLWPFWVDTHVTPPIKARDNNSRCTDKWNESFAFYPHVNSILTSCKSRS 88

Query:    65 IHVAVASRSPAPDIAKTFLHKLGI 88
             I +A+ASR+ APD+A+  L +L I
Sbjct:    89 IPLALASRTHAPDLARDMLKQLHI 112

GO:0008150 "biological_process" evidence=ND

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1SGN7 LOC100520440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 31/90 (34%), Positives = 42/90 (46%)

Query:    19 ENLPRLVVFDLDYTLWPFYCECCYED---------------EIPYLYPHAKGILEALKEK 63
             E LP+L VFDLDYTLWPF+ +   +                +   LYP    +LE L+  
Sbjct:     2 ERLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTIRDRRGQTVRLYPEVPEVLERLQGL 61

Query:    64 GIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             G+ VA ASR+   + A   L    +   FV
Sbjct:    62 GVPVAAASRTGEVEGANQLLELFDLVRHFV 91

GO:0016791 "phosphatase activity" evidence=IEA

CGD|CAL0000216 orf19.6929 [Candida albicans (taxid:5476)]

 Score = 103 (41.3 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query:    22 PRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGI 65
             P+ VVFDLDYTLWP +C+                  Y+ ++ + Y   + I+  L E  +
Sbjct:     7 PKAVVFDLDYTLWPCWCDTHIMTPLKSVSPTTVVDRYDFQLSF-YKDVESIIRELVENDV 65

Query:    66 HVAVASRSPAPDIAKTFLHKLGI 88
              +  ASR+  P IAK  L  L I
Sbjct:    66 KIIAASRTATPHIAKQLLSMLHI 88

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59SU0 CaO19.14191 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 103 (41.3 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query:    22 PRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGI 65
             P+ VVFDLDYTLWP +C+                  Y+ ++ + Y   + I+  L E  +
Sbjct:     7 PKAVVFDLDYTLWPCWCDTHIMTPLKSVSPTTVVDRYDFQLSF-YKDVESIIRELVENDV 65

Query:    66 HVAVASRSPAPDIAKTFLHKLGI 88
              +  ASR+  P IAK  L  L I
Sbjct:    66 KIIAASRTATPHIAKQLLSMLHI 88

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1MXF2 MDP-1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 29/88 (32%), Positives = 40/88 (45%)

Query:    21 LPRLVVFDLDYTLWPFYCECCYEDEIP---------------YLYPHAKGILEALKEKGI 65
             LP+L VFDLDYTLWPF+ +   +                    LYP    +LE L+  G+
Sbjct:     4 LPKLAVFDLDYTLWPFWVDTHVDPPFHKNSDGTVRDRRGQSIQLYPEVPEVLERLRGLGV 63

Query:    66 HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
              +A ASR+   + A   L    +   FV
Sbjct:    64 PIAAASRTGEVEGANQLLELFDLVRYFV 91

GO:0016791 "phosphatase activity" evidence=IEA

POMBASE|SPBP8B7.31 SPBP8B7.31 "acid phosphatase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 75 (31.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query:    22 PRLVVFDLDYTLWPFYCE 39
             P+ VVFDLDYTLWP + +
Sbjct:     8 PKCVVFDLDYTLWPLWID 25

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016791 "phosphatase activity" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

RGD|1311147 Mdp1 "magnesium-dependent phosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 31/90 (34%), Positives = 42/90 (46%)

Query:    21 LPRLVVFDLDYTLWPFYCECCYEDEIPY-----------------LYPHAKGILEALKEK 63
             LP+L VFDLDYTLWPF+ +  + D  P+                 LYP    IL  L+  
Sbjct:     4 LPKLAVFDLDYTLWPFWVDT-HVDP-PFHKSSDGTVRDRRGQDIRLYPEVPEILGRLQSL 61

Query:    64 GIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             G+ VA ASR+   + A   L    +   F+
Sbjct:    62 GVPVAAASRTSEIEGANQLLELFDLGKYFI 91

GO:0005575 "cellular_component" evidence=ND

GO:0016311 "dephosphorylation" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

GO:0030389 "fructosamine metabolic process" evidence=IDA

MGI|MGI:1915131 Mdp1 "magnesium-dependent phosphatase 1" [Mus musculus (taxid:10090)]

 Score = 95 (38.5 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 28/88 (31%), Positives = 38/88 (43%)

Query:    21 LPRLVVFDLDYTLWPFYCECCYEDEIP---------------YLYPHAKGILEALKEKGI 65
             LP+L VFDLDYTLWPF+ +   +                    LYP    +L  L+  G+
Sbjct:     4 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGV 63

Query:    66 HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
              VA ASR+     A   L    +   F+
Sbjct:    64 PVAAASRTSEIQGANQLLELFDLGKYFI 91

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016311 "dephosphorylation" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016791 "phosphatase activity" evidence=ISO

GO:0030389 "fructosamine metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

SGD|S000000936 YER134C "Magnesium-dependent acid phosphatase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 76 (31.8 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query:    22 PRLVVFDLDYTLWPFYCE 39
             P +  FDLDYT+WP YC+
Sbjct:     5 PDVAAFDLDYTIWPCYCD 22

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016311 "dephosphorylation" evidence=IEA

GO:0035335 "peptidyl-tyrosine dephosphorylation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
pfam12689	164	pfam12689, Acid_PPase, Acid Phosphatase	4e-27
cd01427	139	cd01427, HAD_like, Haloacid dehalogenase-like hydr	5e-09
TIGR01685	174	TIGR01685, MDP-1, magnesium-dependent phosphatase-	2e-07
TIGR01681	128	TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatas	5e-07
COG0561	264	COG0561, Cof, Predicted hydrolases of the HAD supe	1e-04
TIGR00099	256	TIGR00099, Cof-subfamily, Cof subfamily of IIB sub	0.002
TIGR01662	132	TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase,	0.002
COG0560	212	COG0560, SerB, Phosphoserine phosphatase [Amino ac	0.002
COG0637	221	COG0637, COG0637, Predicted phosphatase/phosphohex	0.003
pfam13344	101	pfam13344, Hydrolase_6, Haloacid dehalogenase-like	0.003
TIGR01668	170	TIGR01668, YqeG_hyp_ppase, HAD superfamily (subfam	0.003

>gnl|CDD|221713 pfam12689, Acid_PPase, Acid Phosphatase

 Score = 98.8 bits (247), Expect = 4e-27
 Identities = 39/84 (46%), Positives = 48/84 (57%), Gaps = 15/84 (17%)

Query: 21 LPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKGI 65
          LP+L+VFDLDYTLWPF+C+                    E   LYP    IL+ LKEKGI
Sbjct: 2  LPKLIVFDLDYTLWPFWCDTHVGPPFKKDKNGTVVDRRGEELSLYPDVPSILQELKEKGI 61

Query: 66 HVAVASRSPAPDIAKTFLHKLGIH 89
           +AVASR+ APD A+  L  L I+
Sbjct: 62 TIAVASRTDAPDWARELLKLLHIN 85

This family contains phosphatase enzymes and other proteins of the HAD superfamily. It includes MDP-1 which is a eukaryotic magnesium-dependent acid phosphatase. Length = 164

>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83
           V+FDLD TL         E E   LYP  K  L+ LKEKGI +A+A+     ++ +  L
Sbjct: 1  AVLFDLDGTLLDSE-PGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLE-LL 58

Query: 84 HKLGIHSMFVPMV 96
           +LG+   F P++
Sbjct: 59 EELGLDDYFDPVI 71

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139

>gnl|CDD|233529 TIGR01685, MDP-1, magnesium-dependent phosphatase-1

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 19/81 (23%)

Query: 21 LPRLVVFDLDYTLWPFYC------------------ECCYEDEIPYLYPHAKGILEALKE 62
          LPR++VFDLD TLW  Y                         E+  L    + +L+ LK+
Sbjct: 1  LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVT-LIKEVRDVLQTLKD 59

Query: 63 KGIHVAVASRSPAPDIAKTFL 83
           G ++A AS +  P+ A   L
Sbjct: 60 AGTYLATASWNDVPEWAYEIL 80

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues. Length = 174

>gnl|CDD|233526 TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatase, subfamily IIIC

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEI---PYLYPHAKGILEALKEKGIHVAVASRSPAPDIA 79
          +++VFDLD TLW        ED I          +  L+ LK+ G  +A+AS +  P +A
Sbjct: 1  KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVA 60

Query: 80 ----KTFLHKLGI---HSMFVPMV 96
              K F     I      F P+ 
Sbjct: 61 YELLKIFEDFGIIFPLAEYFDPLT 84

This model represents the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate nucleophile hydrolases. Subfamily III (also including IIIA - TIGR01662 and IIIB - pfam03767) contains sequences which do not contain either of the insert domains (between the 1st and 2nd conserved catalytic motifs, subfamily I - TIGR01493, TIGR01509, TIGR01549, TIGR01488, TIGR01494, TIGR01658, TIGR01544 and TIGR01545, or between the 2nd and 3rd, subfamily II - TIGR01460 and TIGR01484). Subfamily IIIC contains five relatively distantly related clades: a family of viral proteins (TIGR01684), a family of eukaryotic proteins called MDP-1 and a family of archaeal proteins most closely related to MDP-1 (TIGR01685), a family of bacteria including the Streptomyces FkbH protein (TIGR01686), and a small clade including the Pasteurella BcbF and EcbF proteins. The overall lack of species overlap among these clades may indicate a conserved function, but the degree of divergence between the clades and the differences in archetecture outside of the domain in some clades warns against such a conclusion. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC. Length = 128

>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
           +L+ FDLD TL            I    P  K  L  L+EKG+ V +A+  P PD   +
Sbjct: 3  IKLLAFDLDGTL------LDSNKTIS---PETKEALARLREKGVKVVLATGRPLPD-VLS 52

Query: 82 FLHKLGIHSMFV 93
           L +LG+    +
Sbjct: 53 ILEELGLDGPLI 64

Length = 264

>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKTF 82
          L+  DLD TL         +  I    P  K  L  L+EKGI V +A+ R       K  
Sbjct: 1  LIFIDLDGTL------LNDDHTIS---PSTKEALAKLREKGIKVVLATGRPYK--EVKNI 49

Query: 83 LHKLGI 88
          L +LG+
Sbjct: 50 LKELGL 55

This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences [Unknown function, Enzymes of unknown specificity]. Length = 256

>gnl|CDD|233517 TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase, subfamily IIIA

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71
          + VV DLD TL         EDE   LYP     L  LKE G  V + +
Sbjct: 1  KGVVLDLDGTLTDDVPYVDDEDER-ILYPEVPDALAELKEAGYKVVIVT 48

This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class III subfamilies are characterized by the lack of any domains located between either between the first and second conserved catalytic motifs (as in the Class I subfamilies, TIGR01493, TIGR01509, TIGR01488 and TIGR01494) or between the second and third conserved catalytic motifs (as in the Class II subfamilies, TIGR01460 and TIGR01484) of the superfamily domain. The IIIA subfamily contains five major clades: histidinol-phosphatase (TIGR01261) and histidinol-phosphatase-related protein (TIGR00213) which together form a subfamily (TIGR01656), DNA 3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668) and YrbI (TIGR01670). In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme [Unknown function, Enzymes of unknown specificity]. Length = 132

>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism]

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 44  DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           +E   L P A+ ++ ALK  G  V + S      + +    +LGI  + 
Sbjct: 73  EEFLRLTPGAEELVAALKAAGAKVVIISGGFTF-LVEPIAERLGIDYVV 120

Length = 212

>gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P    +LE LK +GI +AVAS SP    A+  L +LG+   F  +V
Sbjct: 87  PIPGVVELLEQLKARGIPLAVASSSP-RRAAERVLARLGLLDYFDVIV 133

Length = 221

>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 16/69 (23%)

Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDIAK 80
           +FD+D  LW                P A   L AL+  G  V      +SRS     AK
Sbjct: 1  FLFDVDGVLWRG----------GEPIPGAAEALNALRAAGKPVVFVTNNSSRSRE-QYAK 49

Query: 81 TFLHKLGIH 89
            L KLG  
Sbjct: 50 -KLRKLGFD 57

This family is part of the HAD superfamily. Length = 101

>gnl|CDD|233519 TIGR01668, YqeG_hyp_ppase, HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84
          VV D D TL                YP  +  +E LK  G  + + S +     AK    
Sbjct: 28 VVLDKDNTLVYPD--------HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEK 79

Query: 85 KLGI 88
           LGI
Sbjct: 80 ALGI 83

This family of hypothetical proteins is a member of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterized members of this subfamily (TIGR01662) and most characterized members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs, all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	99.94
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	99.87
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	99.87
PRK14988	224	GMP/IMP nucleotidase; Provisional	99.87
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	99.87
PRK11587	218	putative phosphatase; Provisional	99.86
PRK13226	229	phosphoglycolate phosphatase; Provisional	99.85
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	99.85
PRK13288	214	pyrophosphatase PpaX; Provisional	99.85
PLN02575	381	haloacid dehalogenase-like hydrolase	99.85
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	99.85
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	99.84
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	99.84
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	99.84
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	99.84
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	99.84
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	99.83
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	99.82
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	99.82
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	99.82
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.82
PRK13225	273	phosphoglycolate phosphatase; Provisional	99.81
PLN02940	382	riboflavin kinase	99.81
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	99.81
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	99.81
PRK06769	173	hypothetical protein; Validated	99.8
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	99.8
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	99.8
PRK10563	221	6-phosphogluconate phosphatase; Provisional	99.8
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	99.8
COG0546	220	Gph Predicted phosphatases [General function predi	99.79
PRK13223	272	phosphoglycolate phosphatase; Provisional	99.78
PRK13222	226	phosphoglycolate phosphatase; Provisional	99.78
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	99.78
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	99.77
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	99.76
PRK09449	224	dUMP phosphatase; Provisional	99.76
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	99.75
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	99.75
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	99.75
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	99.75
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	99.75
PHA02597	197	30.2 hypothetical protein; Provisional	99.75
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	99.74
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	99.74
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	99.74
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	99.74
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.73
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	99.71
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	99.71
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	99.71
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	99.7
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	99.69
PLN02954	224	phosphoserine phosphatase	99.68
PHA02530	300	pseT polynucleotide kinase; Provisional	99.67
PRK10748	238	flavin mononucleotide phosphatase; Provisional	99.67
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	99.67
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.67
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.66
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	99.66
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	99.64
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	99.63
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	99.6
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	99.59
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	99.59
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	99.58
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	99.57
PRK13582	205	thrH phosphoserine phosphatase; Provisional	99.55
PLN02811	220	hydrolase	99.54
PRK11133	322	serB phosphoserine phosphatase; Provisional	99.54
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	99.51
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	99.51
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	99.44
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	99.41
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	99.4
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	99.37
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.34
KOG3085	237	consensus Predicted hydrolase (HAD superfamily) [G	99.32
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	99.31
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	99.3
PTZ00445	219	p36-lilke protein; Provisional	99.3
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	99.26
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.25
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	99.24
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	99.23
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	99.21
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	99.21
PHA03398	303	viral phosphatase superfamily protein; Provisional	99.21
PLN02645	311	phosphoglycolate phosphatase	99.2
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	99.19
PRK10976	266	putative hydrolase; Provisional	99.19
PRK01158	230	phosphoglycolate phosphatase; Provisional	99.18
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	99.18
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.16
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	99.15
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	99.13
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	99.12
COG0241	181	HisB Histidinol phosphatase and related phosphatas	99.11
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.1
PRK08238	479	hypothetical protein; Validated	99.1
PRK10513	270	sugar phosphate phosphatase; Provisional	99.09
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.07
COG4996	164	Predicted phosphatase [General function prediction	99.05
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	99.03
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	99.03
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	99.02
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	99.01
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	99.01
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	98.98
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	98.98
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	98.96
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	98.95
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	98.95
PTZ00174	247	phosphomannomutase; Provisional	98.93
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	98.93
PRK10444	248	UMP phosphatase; Provisional	98.92
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	98.92
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	98.89
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	98.88
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	98.83
PLN02887	580	hydrolase family protein	98.82
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	98.81
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	98.79
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	98.77
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	98.74
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	98.73
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	98.67
PRK11590	211	hypothetical protein; Provisional	98.66
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	98.65
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	98.62
PLN02423	245	phosphomannomutase	98.61
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	98.61
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	98.6
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	98.59
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	98.58
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	98.57
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.55
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	98.51
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	98.5
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	98.43
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	98.43
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	98.43
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	98.42
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	98.37
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	98.29
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	98.29
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	98.27
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	98.25
PLN03017	366	trehalose-phosphatase	98.25
PRK10671	834	copA copper exporting ATPase; Provisional	98.21
COG4229	229	Predicted enolase-phosphatase [Energy production a	98.21
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	98.18
KOG4549	144	consensus Magnesium-dependent phosphatase [General	98.17
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	98.15
PLN02151	354	trehalose-phosphatase	98.1
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	98.05
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	98.03
PLN02580	384	trehalose-phosphatase	98.02
KOG1615	227	consensus Phosphoserine phosphatase [Amino acid tr	97.97
PLN02645	311	phosphoglycolate phosphatase	97.97
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	97.91
PF13242	75	Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OY	97.9
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	97.9
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	97.89
PLN02382	413	probable sucrose-phosphatase	97.85
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	97.76
COG2503	274	Predicted secreted acid phosphatase [General funct	97.61
COG3700	237	AphA Acid phosphatase (class B) [General function	97.61
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	97.59
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.49
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	97.44
COG4359	220	Uncharacterized conserved protein [Function unknow	97.42
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	97.37
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	97.25
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	97.22
PRK10444	248	UMP phosphatase; Provisional	97.2
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	97.19
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	97.14
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	97.11
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	97.06
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	96.95
KOG1618	389	consensus Predicted phosphatase [General function	96.93
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	96.92
COG5663	194	Uncharacterized conserved protein [Function unknow	96.68
KOG3189	252	consensus Phosphomannomutase [Lipid transport and	96.67
KOG2630	254	consensus Enolase-phosphatase E-1 [Amino acid tran	96.4
PF06437	408	ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR0	95.91
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	95.84
KOG2116	738	consensus Protein involved in plasmid maintenance/	95.76
COG4087	152	Soluble P-type ATPase [General function prediction	95.69
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	95.6
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	95.08
PF04312	138	DUF460: Protein of unknown function (DUF460); Inte	95.06
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	94.78
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	94.5
PRK14010	673	potassium-transporting ATPase subunit B; Provision	93.72
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	93.66
PRK01122	679	potassium-transporting ATPase subunit B; Provision	93.52
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	93.23
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	93.2
PF05761	448	5_nucleotid: 5' nucleotidase family; InterPro: IPR	92.59
COG5083	580	SMP2 Uncharacterized protein involved in plasmid m	92.56
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	91.74
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	91.71
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	91.6
PLN02499	498	glycerol-3-phosphate acyltransferase	91.38
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	91.2
COG4850	373	Uncharacterized conserved protein [Function unknow	91.17
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	91.1
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	89.93
PRK01158	230	phosphoglycolate phosphatase; Provisional	88.64
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	88.6
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	88.58
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	88.5
PRK15122	903	magnesium-transporting ATPase; Provisional	87.98
PF02590	155	SPOUT_MTase: Predicted SPOUT methyltransferase; In	87.91
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	87.81
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	87.52
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	87.48
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	87.48
PRK00103	157	rRNA large subunit methyltransferase; Provisional	87.41
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	87.23
COG1576	155	Uncharacterized conserved protein [Function unknow	87.13
KOG2961	190	consensus Predicted hydrolase (HAD superfamily) [G	86.74
KOG1605	262	consensus TFIIF-interacting CTD phosphatase, inclu	86.73
PF06189	264	5-nucleotidase: 5'-nucleotidase; InterPro: IPR0103	86.57
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	86.02
TIGR02495	191	NrdG2 anaerobic ribonucleoside-triphosphate reduct	85.86
PRK13762	322	tRNA-modifying enzyme; Provisional	85.8
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	84.58
KOG3128	298	consensus Uncharacterized conserved protein [Funct	84.46
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	84.02
PF06258	311	Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP	82.42
TIGR02468	1050	sucrsPsyn_pln sucrose phosphate synthase/possible	82.41
KOG0202	972	consensus Ca2+ transporting ATPase [Inorganic ion	80.96

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=99.94  E-value=2.6e-27  Score=183.62  Aligned_cols=97  Identities=25%  Similarity=0.181  Sum_probs=84.6

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHHh--hCCCcc
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFLF--FFSISA  116 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~~--~~~~~~  116 (149)
                      +..++.||+.++|+.|+++|++++++||+++.. ++..++.+|+.+||+.+      ...||+|+++++.+.  +++|++
T Consensus        83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~-~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~  161 (221)
T COG0637          83 EGLKPIPGVVELLEQLKARGIPLAVASSSPRRA-AERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEE  161 (221)
T ss_pred             cCCCCCccHHHHHHHHHhcCCcEEEecCChHHH-HHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence            446899999999999999999999999999988 79999999999999875      244888855555554  488999


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      |+|||||++||+||++|||.+|.+..
T Consensus       162 CvviEDs~~Gi~Aa~aAGm~vv~v~~  187 (221)
T COG0637         162 CVVVEDSPAGIQAAKAAGMRVVGVPA  187 (221)
T ss_pred             eEEEecchhHHHHHHHCCCEEEEecC
Confidence            99999999999999999999998753

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=99.87  E-value=4.5e-22  Score=149.54  Aligned_cols=119  Identities=24%  Similarity=0.269  Sum_probs=98.8

Q ss_pred             CccEEEEecCCccccccccc-----------------cccCCCCccCccHHHHHHHHHHCCceEEEEeCC-CchHHHHHH
Q 032013           21 LPRLVVFDLDYTLWPFYCEC-----------------CYEDEIPYLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTF   82 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~-----------------~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~-~~~~i~~~~   82 (149)
                      .|++++||+|+|||+++++.                 +.....+.++||+.++|+.|+++|++++|+||+ +... ++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~-~~~~   79 (174)
T TIGR01685         1 LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEW-AYEI   79 (174)
T ss_pred             CCcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHH-HHHH
Confidence            38999999999999987662                 123445789999999999999999999999998 7777 7899


Q ss_pred             HHHcCCC---------CCccccc----ccCCChhHHHHHHh------hCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           83 LHKLGIH---------SMFVPMV----RLSCCIMCIIFFLF------FFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        83 l~~~gl~---------~~f~~~~----~~~p~p~~~i~~~~------~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++.+++.         .+|+.+.    ..++.|.+.++.+.      +++|++|++++||+.+++||++||++++-.
T Consensus        80 L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v  156 (174)
T TIGR01685        80 LGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYC  156 (174)
T ss_pred             HHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEc
Confidence            9999998         8888753    23455555666653      488999999999999999999999998765

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=99.87  E-value=5.8e-22  Score=157.22  Aligned_cols=94  Identities=20%  Similarity=0.184  Sum_probs=80.7

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++||+.++|++|+++|++++|+||++... +...++++|+..||+.+.      ..||+|.++..+.  .+++|++|
T Consensus       107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~  185 (260)
T PLN03243        107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRY-LERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERC  185 (260)
T ss_pred             CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHH-HHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHe
Confidence            35689999999999999999999999999988 799999999999998763      3477774444443  56778999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++++||..|++||++|||+++.+
T Consensus       186 l~IgDs~~Di~aA~~aG~~~i~v  208 (260)
T PLN03243        186 IVFGNSNSSVEAAHDGCMKCVAV  208 (260)
T ss_pred             EEEcCCHHHHHHHHHcCCEEEEE
Confidence            99999999999999999998765

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=99.87  E-value=5.7e-22  Score=153.77  Aligned_cols=92  Identities=15%  Similarity=0.050  Sum_probs=77.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|++|+++|++++|+||+++.. +...++.+|+..+|+.+.      ..||+|.++.++.  .+++|++|+
T Consensus        92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l  170 (224)
T PRK14988         92 AVLREDTVPFLEALKASGKRRILLTNAHPHN-LAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTL  170 (224)
T ss_pred             CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH-HHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence            5689999999999999999999999999888 688899999999998652      3467774444433  567789999


Q ss_pred             EEeehHhHHHHHHHhCCchhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      ++|||+.|++||++|||++++
T Consensus       171 ~igDs~~di~aA~~aG~~~~~  191 (224)
T PRK14988        171 FIDDSEPILDAAAQFGIRYCL  191 (224)
T ss_pred             EEcCCHHHHHHHHHcCCeEEE
Confidence            999999999999999999643

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=99.87  E-value=5.6e-22  Score=155.75  Aligned_cols=94  Identities=14%  Similarity=0.134  Sum_probs=81.0

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++||+.++|++|+++|++++|+||+++.. ++..++++|+..||+.+.      ..||+|.++..+.  .+++|++|
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~  184 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPREN-AELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHT  184 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHE
Confidence            46789999999999999999999999999998 799999999999998762      3477775544444  45778999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++++|++.||+||++||++++.+
T Consensus       185 l~vgDs~~Di~aA~~aGi~~i~v  207 (248)
T PLN02770        185 FVFEDSVSGIKAGVAAGMPVVGL  207 (248)
T ss_pred             EEEcCCHHHHHHHHHCCCEEEEE
Confidence            99999999999999999998865

>PRK11587 putative phosphatase; Provisional

Probab=99.86  E-value=1.3e-21  Score=150.54  Aligned_cols=94  Identities=15%  Similarity=0.091  Sum_probs=76.8

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++||+.++|+.|+++|++++|+||++... +...++..++. +|+.+      ...||+|.++..+.  .+++|++|
T Consensus        81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~-~~~~l~~~~l~-~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~  158 (218)
T PRK11587         81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPV-ASARHKAAGLP-APEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQEC  158 (218)
T ss_pred             CceeCcCHHHHHHHHHHcCCcEEEEcCCCchH-HHHHHHhcCCC-CccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccE
Confidence            45789999999999999999999999999887 68888888884 34433      23477774444443  56788999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      ++++||+.|++||++|||+++.+.
T Consensus       159 l~igDs~~di~aA~~aG~~~i~v~  182 (218)
T PRK11587        159 VVVEDAPAGVLSGLAAGCHVIAVN  182 (218)
T ss_pred             EEEecchhhhHHHHHCCCEEEEEC
Confidence            999999999999999999988764

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=99.85  E-value=2e-21  Score=150.73  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=79.7

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      .+++||+.++|++|+++|++++|+||++... +...++.+++..+|+.+.      ..||+|.+...+.  .+++|++|+
T Consensus        94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l  172 (229)
T PRK13226         94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYL-ARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV  172 (229)
T ss_pred             CeeCCCHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEE
Confidence            5789999999999999999999999999887 688999999998887642      3477775555554  567789999


Q ss_pred             EEeehHhHHHHHHHhCCchhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +++|++++|.+|++||++++.+
T Consensus       173 ~IGDs~~Di~aA~~aG~~~i~v  194 (229)
T PRK13226        173 YVGDDERDILAARAAGMPSVAA  194 (229)
T ss_pred             EeCCCHHHHHHHHHCCCcEEEE
Confidence            9999999999999999998754

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=99.85  E-value=2.6e-21  Score=148.02  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|++|+++|++++|+||++... +...++.+|+..+|+.+.      ..||+|.++..+.  .++++++|+
T Consensus        93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~  171 (221)
T TIGR02253        93 LRVYPGVRDTLMELRESGYRLGIITDGLPVK-QWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAV  171 (221)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence            4689999999999999999999999999888 689999999999998752      3477775544444  557779999


Q ss_pred             EEeehH-hHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      +++||+ ++|++|++||++++.+.+
T Consensus       172 ~igDs~~~di~~A~~aG~~~i~~~~  196 (221)
T TIGR02253       172 MVGDRLDKDIKGAKNLGMKTVWINQ  196 (221)
T ss_pred             EECCChHHHHHHHHHCCCEEEEECC
Confidence            999998 899999999999987654

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=99.85  E-value=2.8e-21  Score=147.84  Aligned_cols=94  Identities=13%  Similarity=0.076  Sum_probs=80.6

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++||+.++|++|+++|++++|+||++... +...++.+|+..||+.+.      ..||+|.....+.  .++++++|
T Consensus        80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~  158 (214)
T PRK13288         80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDT-VEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEA  158 (214)
T ss_pred             hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence            35789999999999999999999999999888 799999999999998763      2477775555444  45777999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++++||+++++||++||++++.+
T Consensus       159 ~~iGDs~~Di~aa~~aG~~~i~v  181 (214)
T PRK13288        159 LMVGDNHHDILAGKNAGTKTAGV  181 (214)
T ss_pred             EEECCCHHHHHHHHHCCCeEEEE
Confidence            99999999999999999998754

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=99.85  E-value=3.4e-21  Score=159.82  Aligned_cols=95  Identities=19%  Similarity=0.145  Sum_probs=81.9

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++||+.++|+.|+++|++++|+||+++.. ++..++.+|+..||+.+.      ..||+|.++.++.  .++.|++|
T Consensus       214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~-~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec  292 (381)
T PLN02575        214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRKT-LENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC  292 (381)
T ss_pred             CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence            35789999999999999999999999999998 799999999999998873      3477775555444  55678999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      ++|+||+.||+||++|||+++.+.
T Consensus       293 l~IGDS~~DIeAAk~AGm~~IgV~  316 (381)
T PLN02575        293 IVFGNSNQTVEAAHDARMKCVAVA  316 (381)
T ss_pred             EEEcCCHHHHHHHHHcCCEEEEEC
Confidence            999999999999999999988753

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=99.85  E-value=4.4e-21  Score=147.62  Aligned_cols=96  Identities=18%  Similarity=0.127  Sum_probs=81.6

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++||+.++|+.|+++|++++|+||+.... ++..++.+++..+|+.+.      ..||+|.....+.  .+++|++|
T Consensus        90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  168 (222)
T PRK10826         90 TRPLLPGVREALALCKAQGLKIGLASASPLHM-LEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC  168 (222)
T ss_pred             CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            35789999999999999999999999999988 799999999999998763      3477774433333  56777999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      ++++||++++.||++||++++.+.+
T Consensus       169 ~~igDs~~Di~aA~~aG~~~i~v~~  193 (222)
T PRK10826        169 VALEDSFNGMIAAKAARMRSIVVPA  193 (222)
T ss_pred             EEEcCChhhHHHHHHcCCEEEEecC
Confidence            9999999999999999999988753

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=99.84  E-value=5.8e-21  Score=149.69  Aligned_cols=93  Identities=8%  Similarity=-0.069  Sum_probs=78.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc-ccc------cccCCChhHHHHHH--hhCC-Ccc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPM------VRLSCCIMCIIFFL--FFFS-ISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f-~~~------~~~~p~p~~~i~~~--~~~~-~~~  116 (149)
                      ..++||+.++|++|+++|++++|+||++... ++..++.+|+..+| +.+      ...||+|.++..+.  .++. |++
T Consensus        98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~-~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~  176 (253)
T TIGR01422        98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREM-MDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA  176 (253)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence            4689999999999999999999999999988 79999999999886 543      24477875555544  4453 789


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      |++++||++||+||++|||++|.+
T Consensus       177 ~l~IGDs~~Di~aA~~aGi~~i~v  200 (253)
T TIGR01422       177 CVKVGDTVPDIEEGRNAGMWTVGL  200 (253)
T ss_pred             eEEECCcHHHHHHHHHCCCeEEEE
Confidence            999999999999999999999865

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=99.84  E-value=4.4e-21  Score=145.01  Aligned_cols=94  Identities=17%  Similarity=0.153  Sum_probs=81.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      .+++||+.++|++|+++|++++|+||++... +...++.+|+..+|+.+.      ..||+|  .+|..    .+++|++
T Consensus        91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~--~~~~~~~~~~~~~p~~  167 (198)
T TIGR01428        91 LPPHPDVPAGLRALKERGYRLAILSNGSPAM-LKSLVKHAGLDDPFDAVLSADAVRAYKPAP--QVYQLALEALGVPPDE  167 (198)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHCCChhhhheeEehhhcCCCCCCH--HHHHHHHHHhCCChhh
Confidence            5688999999999999999999999999888 799999999988888652      346776  55554    6678899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYKRL  143 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~~~  143 (149)
                      |++++|++.++.+|++|||+++.+.|-
T Consensus       168 ~~~vgD~~~Di~~A~~~G~~~i~v~r~  194 (198)
T TIGR01428       168 VLFVASNPWDLGGAKKFGFKTAWVNRP  194 (198)
T ss_pred             EEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence            999999999999999999999987763

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=99.84  E-value=3.5e-21  Score=149.46  Aligned_cols=96  Identities=21%  Similarity=0.144  Sum_probs=76.5

Q ss_pred             CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC-CCCCcccc--------cccCCChhHHHHHH----h
Q 032013           44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-IHSMFVPM--------VRLSCCIMCIIFFL----F  110 (149)
Q Consensus        44 ~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g-l~~~f~~~--------~~~~p~p~~~i~~~----~  110 (149)
                      .....+.||+.+++++|+.+|++++++|++++.. .+..++.++ +...|...        ...||+|  ++|++    +
T Consensus        88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~-~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~P--di~l~A~~~l  164 (222)
T KOG2914|consen   88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSAS-FELKISRHEDIFKNFSHVVLGDDPEVKNGKPDP--DIYLKAAKRL  164 (222)
T ss_pred             ccccccCCcHHHHHHHHHhCCCCeeEEecCCccc-HHHHHHHhhHHHHhcCCCeecCCccccCCCCCc--hHHHHHHHhc
Confidence            3456899999999999999999999999998887 677777665 44434332        2346777  77776    4


Q ss_pred             hCCC-cceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          111 FFSI-SAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       111 ~~~~-~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +.++ ++|+|||||++|++||++|||++|....
T Consensus       165 ~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~  197 (222)
T KOG2914|consen  165 GVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT  197 (222)
T ss_pred             CCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence            5666 8999999999999999999999997653

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=99.84  E-value=1.5e-20  Score=136.97  Aligned_cols=119  Identities=17%  Similarity=0.046  Sum_probs=90.3

Q ss_pred             cEEEEecCCccccccc-cccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHHc
Q 032013           23 RLVVFDLDYTLWPFYC-ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL   86 (149)
Q Consensus        23 k~vifDlDGTLld~~~-~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~~   86 (149)
                      ++++||+||||++... .+...+....++||+.++|++|+++|++++|+||+++               .. +...++++
T Consensus         1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~   79 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGR-VLELLRQL   79 (147)
T ss_pred             CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHH-HHHHHHhC
Confidence            4689999999999632 1222333457899999999999999999999999874               34 56778889


Q ss_pred             CCCC--Cccc-------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           87 GIHS--MFVP-------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        87 gl~~--~f~~-------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      ++..  +|..       ....||+|.....+.  .++++++|+.++|++.+|++|+++|++++.+.|
T Consensus        80 ~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~  146 (147)
T TIGR01656        80 GVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVD  146 (147)
T ss_pred             CCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecC
Confidence            9862  2221       123477774443333  457779999999999999999999999998875

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=99.84  E-value=1.9e-20  Score=143.50  Aligned_cols=93  Identities=19%  Similarity=0.136  Sum_probs=77.8

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC--CCccccc------ccCCChhHHHHHH--hhCC-Cc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMV------RLSCCIMCIIFFL--FFFS-IS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~--~~f~~~~------~~~p~p~~~i~~~--~~~~-~~  115 (149)
                      .+++||+.++|++|+++|++++|+||++... +...++.+|+.  .+|+.+.      ..||+|.....+.  .+++ |+
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~  164 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT-AERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQ  164 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence            5799999999999999999999999999998 79999999998  8888762      3467774444443  3454 58


Q ss_pred             ceEEEeehHhHHHHHHHhCCch-hhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDL-YVY  140 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~-~~~  140 (149)
                      +|++++|++.||+||++|||++ +.+
T Consensus       165 ~~~~igD~~~Di~aa~~aG~~~~i~~  190 (220)
T TIGR03351       165 SVAVAGDTPNDLEAGINAGAGAVVGV  190 (220)
T ss_pred             HeEEeCCCHHHHHHHHHCCCCeEEEE
Confidence            9999999999999999999999 443

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=99.83  E-value=1.1e-20  Score=143.69  Aligned_cols=93  Identities=19%  Similarity=0.321  Sum_probs=79.9

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|++|+++|++++|+||++... ++..++++|+..+|+.+.      ..||+|.++..+.  .+++|++|+
T Consensus        84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~  162 (213)
T TIGR01449        84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPL-ARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMV  162 (213)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeE
Confidence            5789999999999999999999999999888 799999999999987653      2477775544444  456779999


Q ss_pred             EEeehHhHHHHHHHhCCchhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +++||++|+++|++||++++.+
T Consensus       163 ~igDs~~d~~aa~~aG~~~i~v  184 (213)
T TIGR01449       163 YVGDSRVDIQAARAAGCPSVLL  184 (213)
T ss_pred             EeCCCHHHHHHHHHCCCeEEEE
Confidence            9999999999999999999866

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=99.82  E-value=1.8e-20  Score=140.09  Aligned_cols=92  Identities=18%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++|+ .+.|++|+++ ++++|+||++... ++..++++|+..||+.+.      ..||+|.+...+.  .+++|++|+
T Consensus        87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~-~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l  163 (188)
T PRK10725         87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESAI-AEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV  163 (188)
T ss_pred             CCCccH-HHHHHHHHhC-CCEEEEcCCchHH-HHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence            456775 5899999876 8999999999998 799999999999998762      3467774444333  556679999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +++|++.|++||++||+++|-+.
T Consensus       164 ~igDs~~di~aA~~aG~~~i~~~  186 (188)
T PRK10725        164 VFEDADFGIQAARAAGMDAVDVR  186 (188)
T ss_pred             EEeccHhhHHHHHHCCCEEEeec
Confidence            99999999999999999988654

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=99.82  E-value=3.7e-20  Score=131.89  Aligned_cols=118  Identities=21%  Similarity=0.151  Sum_probs=91.3

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC--------chHHHHHHHHHcCCCCCccc
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--------APDIAKTFLHKLGIHSMFVP   94 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~--------~~~i~~~~l~~~gl~~~f~~   94 (149)
                      |+++||+||||+++-.+ ........++|++.++|++|+++|++++++||++        ... +...++.+++...+..
T Consensus         1 k~~~~D~dgtL~~~~~~-~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~   78 (132)
T TIGR01662         1 KGVVLDLDGTLTDDVPY-VDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR-VARRLEELGVPIDVLY   78 (132)
T ss_pred             CEEEEeCCCceecCCCC-CCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH-HHHHHHHCCCCEEEEE
Confidence            57999999999974111 1122335789999999999999999999999998        677 6889999998643322


Q ss_pred             c--cccCCChhHHHHHH--h-hCCCcceEEEee-hHhHHHHHHHhCCchhhhhh
Q 032013           95 M--VRLSCCIMCIIFFL--F-FFSISAFILFVD-LFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        95 ~--~~~~p~p~~~i~~~--~-~~~~~~~l~~eD-s~~gi~aa~~ag~~~~~~~~  142 (149)
                      .  ...||+|..+.++.  . ++++++|+.+.| +..+|.+|+++|++++.+.+
T Consensus        79 ~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~~  132 (132)
T TIGR01662        79 ACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVAP  132 (132)
T ss_pred             ECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEeeC
Confidence            1  23477775554444  4 367799999999 89999999999999998754

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=99.82  E-value=7e-20  Score=144.96  Aligned_cols=94  Identities=9%  Similarity=-0.064  Sum_probs=76.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc-ccc------cccCCChhHHHHHH--hhCC-Ccc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPM------VRLSCCIMCIIFFL--FFFS-ISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f-~~~------~~~~p~p~~~i~~~--~~~~-~~~  116 (149)
                      ..++||+.++|++|+++|++++|+||++... +...++.+++..+| +.+      ...||+|.++..+.  .++. +++
T Consensus       100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~-~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e  178 (267)
T PRK13478        100 ATPIPGVLEVIAALRARGIKIGSTTGYTREM-MDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA  178 (267)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence            4679999999999999999999999999988 68899988887764 443      13477775444443  4454 488


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++++||++||+||++|||++|.+.
T Consensus       179 ~l~IGDs~~Di~aA~~aG~~~i~v~  203 (267)
T PRK13478        179 CVKVDDTVPGIEEGLNAGMWTVGVI  203 (267)
T ss_pred             eEEEcCcHHHHHHHHHCCCEEEEEc
Confidence            9999999999999999999988653

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=99.82  E-value=3.5e-20  Score=157.09  Aligned_cols=95  Identities=16%  Similarity=0.082  Sum_probs=81.6

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc-----cCCChhHHHHHHhhCCCcceEEE
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR-----LSCCIMCIIFFLFFFSISAFILF  120 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~-----~~p~p~~~i~~~~~~~~~~~l~~  120 (149)
                      ..+++||+.++|++|+++|++++|+||++... +...++.+++..||+.+..     .+|+|.+...+...++|++|+++
T Consensus       328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~-~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~V  406 (459)
T PRK06698        328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEY-LRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVV  406 (459)
T ss_pred             CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEE
Confidence            35789999999999999999999999999999 7999999999999887621     25777544444466889999999


Q ss_pred             eehHhHHHHHHHhCCchhhhh
Q 032013          121 VDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       121 eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |||++|++||++|||.++.+.
T Consensus       407 GDs~~Di~aAk~AG~~~I~v~  427 (459)
T PRK06698        407 GDRLSDINAAKDNGLIAIGCN  427 (459)
T ss_pred             eCCHHHHHHHHHCCCeEEEEe
Confidence            999999999999999987653

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=99.81  E-value=6.7e-20  Score=146.40  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=78.7

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc---CCChhHHHHHH--hhCCCcceEEE
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL---SCCIMCIIFFL--FFFSISAFILF  120 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~---~p~p~~~i~~~--~~~~~~~~l~~  120 (149)
                      ..+++||+.++|++|+++|++++|+||+.... +...++.+|+.++|+.+...   .++|.+...+.  .++.|++|++|
T Consensus       140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~-~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~I  218 (273)
T PRK13225        140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQN-IEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYV  218 (273)
T ss_pred             cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEE
Confidence            35789999999999999999999999999998 79999999999999876322   34554433333  46788999999


Q ss_pred             eehHhHHHHHHHhCCchhhh
Q 032013          121 VDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       121 eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +||++||+||++|||+++.+
T Consensus       219 GDs~~Di~aA~~AG~~~I~v  238 (273)
T PRK13225        219 GDETRDVEAARQVGLIAVAV  238 (273)
T ss_pred             CCCHHHHHHHHHCCCeEEEE
Confidence            99999999999999998754

>PLN02940 riboflavin kinase

Probab=99.81  E-value=4.9e-20  Score=153.27  Aligned_cols=95  Identities=18%  Similarity=0.180  Sum_probs=79.5

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH-HcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH-KLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~-~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ...++||+.++|++|+++|++++|+||+++.. +...++ ..++.++|+.+.      ..||+|.....+.  .+++|++
T Consensus        91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~-~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~  169 (382)
T PLN02940         91 NIKALPGANRLIKHLKSHGVPMALASNSPRAN-IEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSN  169 (382)
T ss_pred             cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhH
Confidence            35689999999999999999999999999888 688887 789999998772      3477774433333  5677899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++++||+.||+||++|||+++.+.
T Consensus       170 ~l~VGDs~~Di~aA~~aGi~~I~v~  194 (382)
T PLN02940        170 CLVIEDSLPGVMAGKAAGMEVIAVP  194 (382)
T ss_pred             EEEEeCCHHHHHHHHHcCCEEEEEC
Confidence            9999999999999999999988765

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=99.81  E-value=2.1e-19  Score=134.42  Aligned_cols=114  Identities=11%  Similarity=-0.046  Sum_probs=83.9

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHHcC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKLG   87 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~~g   87 (149)
                      +++++|.||||+....+ ....+...++||+.++|++|+++|++++|+||++.               .. ....++..+
T Consensus         2 ~~~~~D~Dgtl~~~~~~-~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~   79 (176)
T TIGR00213         2 KAIFLDRDGTINIDHGY-VHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEW-MDWSLAERD   79 (176)
T ss_pred             CEEEEeCCCCEeCCCCC-CCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHHcC
Confidence            67999999999953222 22334577899999999999999999999999984               22 234556655


Q ss_pred             CC--CCccc-------------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013           88 IH--SMFVP-------------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus        88 l~--~~f~~-------------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                      +.  ..+.+             ....||+|..+..+.  .++++++|++++|++.+|+||++||++++
T Consensus        80 ~~~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~  147 (176)
T TIGR00213        80 VDLDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTN  147 (176)
T ss_pred             CCccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEE
Confidence            44  21211             123588885544444  56778999999999999999999999983

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=99.81  E-value=1.2e-19  Score=135.08  Aligned_cols=90  Identities=26%  Similarity=0.285  Sum_probs=75.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|+.|+++|++++++||+  .. ++..++.+|+..+|+.+.      ..||+|..+..+.  .++++++|+
T Consensus        87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~-~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v  163 (185)
T TIGR02009        87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KN-ADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECV  163 (185)
T ss_pred             CCCCcCHHHHHHHHHHcCCeEEEEeCc--hh-HHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeE
Confidence            679999999999999999999999998  55 688999999999888762      3467774433333  457779999


Q ss_pred             EEeehHhHHHHHHHhCCchhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++|++.+++||++|||+++.
T Consensus       164 ~IgD~~~di~aA~~~G~~~i~  184 (185)
T TIGR02009       164 VFEDALAGVQAARAAGMFAVA  184 (185)
T ss_pred             EEeCcHhhHHHHHHCCCeEee
Confidence            999999999999999999874

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PRK06769 hypothetical protein; Validated

Probab=99.80  E-value=2.1e-19  Score=134.50  Aligned_cols=119  Identities=17%  Similarity=0.131  Sum_probs=90.4

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCch--------HHHHHHHHHcCCCCCc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------DIAKTFLHKLGIHSMF   92 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~--------~i~~~~l~~~gl~~~f   92 (149)
                      .++++++|.||||-.+ ..+.. .....++||+.++|++|+++|++++|+||++..        . ....++.+|+..+|
T Consensus         3 ~~~~~~~d~d~~~~~~-~~~~~-~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~-~~~~l~~~g~~~~~   79 (173)
T PRK06769          3 NIQAIFIDRDGTIGGD-TTIHY-PGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIAD-FVQELKGFGFDDIY   79 (173)
T ss_pred             CCcEEEEeCCCcccCC-CCCCC-HHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHH-HHHHHHhCCcCEEE
Confidence            4899999999999642 22221 123578999999999999999999999998741        2 24457788888877


Q ss_pred             cccc-------ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           93 VPMV-------RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        93 ~~~~-------~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      ....       ..||+|.....+.  .+++|++|++++|++.+++||++|||+++.+.+
T Consensus        80 ~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~  138 (173)
T PRK06769         80 LCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRT  138 (173)
T ss_pred             ECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEec
Confidence            5432       3578774444443  456679999999999999999999999997754

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=99.80  E-value=9.9e-20  Score=138.41  Aligned_cols=92  Identities=18%  Similarity=0.245  Sum_probs=79.3

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCc
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSIS  115 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~  115 (149)
                      ...++||+.++|++|+++|++++|+||+.... +...++.+|+.++|+.+.      ..||+|  ++|..    .+++++
T Consensus        73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~--~~~~~~~~~~~~~~~  149 (205)
T TIGR01454        73 EVEVFPGVPELLAELRADGVGTAIATGKSGPR-ARSLLEALGLLPLFDHVIGSDEVPRPKPAP--DIVREALRLLDVPPE  149 (205)
T ss_pred             ccccCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHcCChhheeeEEecCcCCCCCCCh--HHHHHHHHHcCCChh
Confidence            46789999999999999999999999999888 799999999998888652      246666  66665    557789


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +|++++|+++++.+|+++||+++.+
T Consensus       150 ~~l~igD~~~Di~aA~~~Gi~~i~~  174 (205)
T TIGR01454       150 DAVMVGDAVTDLASARAAGTATVAA  174 (205)
T ss_pred             heEEEcCCHHHHHHHHHcCCeEEEE
Confidence            9999999999999999999998754

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=99.80  E-value=3.5e-19  Score=133.59  Aligned_cols=120  Identities=13%  Similarity=0.020  Sum_probs=88.5

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHH
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHK   85 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~   85 (149)
                      +.|+++||.||||.-....+........++||+.++|++|+++|++++|+||++.               .. ....++.
T Consensus         2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~~   80 (181)
T PRK08942          2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEK-MDWSLAD   80 (181)
T ss_pred             CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHH
Confidence            5789999999998764323333334467999999999999999999999999863               22 2445666


Q ss_pred             cCCC--CCccc-------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013           86 LGIH--SMFVP-------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        86 ~gl~--~~f~~-------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|+.  ..|..       ....||+|..+..+.  .++++++|++++|+++++.+|++|||+++...
T Consensus        81 ~g~~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~  147 (181)
T PRK08942         81 RGGRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVR  147 (181)
T ss_pred             cCCccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEc
Confidence            6752  22211       124588885555444  55778999999999999999999999887653

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=99.80  E-value=1.4e-19  Score=138.89  Aligned_cols=90  Identities=17%  Similarity=0.195  Sum_probs=73.9

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc-c------cccCCChhHHHHHH--hhCCCcce
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-M------VRLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~-~------~~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ..++||+.++|+.|   +++++|+||++... ++..++.+++..+|+. +      ...||+|..+..+.  .+++|++|
T Consensus        87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~-~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~  162 (221)
T PRK10563         87 LEPIAGANALLESI---TVPMCVVSNGPVSK-MQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC  162 (221)
T ss_pred             CCcCCCHHHHHHHc---CCCEEEEeCCcHHH-HHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence            57889999999998   48999999999888 7999999999998853 2      23477774444444  55677999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++++|+++||+||++|||+++.+
T Consensus       163 l~igDs~~di~aA~~aG~~~i~~  185 (221)
T PRK10563        163 ILVDDSSAGAQSGIAAGMEVFYF  185 (221)
T ss_pred             EEEeCcHhhHHHHHHCCCEEEEE
Confidence            99999999999999999999754

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=99.80  E-value=1.8e-19  Score=134.10  Aligned_cols=89  Identities=29%  Similarity=0.237  Sum_probs=74.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      ..++||+.++|++|+++|++++|+||+..   ....++.+|+..+|+.+.      ..||+|  .+|..    .++++++
T Consensus        86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p--~~~~~~~~~~~~~~~~  160 (185)
T TIGR01990        86 ADVLPGIKNLLDDLKKNNIKIALASASKN---APTVLEKLGLIDYFDAIVDPAEIKKGKPDP--EIFLAAAEGLGVSPSE  160 (185)
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcc---HHHHHHhcCcHhhCcEEEehhhcCCCCCCh--HHHHHHHHHcCCCHHH
Confidence            36889999999999999999999999753   356899999999988752      346666  66554    4577799


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      |++++|++++++||++|||+++.+
T Consensus       161 ~v~vgD~~~di~aA~~aG~~~i~v  184 (185)
T TIGR01990       161 CIGIEDAQAGIEAIKAAGMFAVGV  184 (185)
T ss_pred             eEEEecCHHHHHHHHHcCCEEEec
Confidence            999999999999999999998753

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=99.79  E-value=7.3e-19  Score=135.84  Aligned_cols=93  Identities=20%  Similarity=0.284  Sum_probs=81.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc------cCCChhHHHHHHhhCCC--cceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR------LSCCIMCIIFFLFFFSI--SAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~------~~p~p~~~i~~~~~~~~--~~~l  118 (149)
                      ..++||+.++|++|+++|++++|+||++... ++..++++|+..||+.+.+      .||+|.+.+.+...++.  ++++
T Consensus        88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~-~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l  166 (220)
T COG0546          88 SRLFPGVKELLAALKSAGYKLGIVTNKPERE-LDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL  166 (220)
T ss_pred             CccCCCHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence            4689999999999999999999999999999 7999999999999987754      48899887777755444  4889


Q ss_pred             EEeehHhHHHHHHHhCCchhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      .+=||.+.|+||++||++++..
T Consensus       167 ~VGDs~~Di~aA~~Ag~~~v~v  188 (220)
T COG0546         167 MVGDSLNDILAAKAAGVPAVGV  188 (220)
T ss_pred             EECCCHHHHHHHHHcCCCEEEE
Confidence            9999999999999999987643

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=99.78  E-value=7.8e-19  Score=139.89  Aligned_cols=92  Identities=18%  Similarity=0.241  Sum_probs=78.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|+.|+++|++++|+||++... ++..++.+++..+|+.+.      ..||+|.++..+.  .++++++|+
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~-~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l  178 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPERF-VAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSL  178 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHHH-HHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEE
Confidence            4579999999999999999999999999888 689999999998887652      3477775555544  557779999


Q ss_pred             EEeehHhHHHHHHHhCCchhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++|+.++|++|++|||+++.
T Consensus       179 ~IGD~~~Di~aA~~aGi~~i~  199 (272)
T PRK13223        179 FVGDSRSDVLAAKAAGVQCVA  199 (272)
T ss_pred             EECCCHHHHHHHHHCCCeEEE
Confidence            999999999999999998765

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=99.78  E-value=1.4e-18  Score=133.05  Aligned_cols=94  Identities=24%  Similarity=0.275  Sum_probs=79.3

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++||+.++|++|+++|++++++||+.... +...++.+++..+|+.+.      ..||+|.....+.  .++++++|
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  169 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPF-VAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEM  169 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhhe
Confidence            36799999999999999999999999999888 689999999998888653      3467774433333  55777999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++++|+++++.+|+++|++++.+
T Consensus       170 i~igD~~~Di~~a~~~g~~~i~v  192 (226)
T PRK13222        170 LFVGDSRNDIQAARAAGCPSVGV  192 (226)
T ss_pred             EEECCCHHHHHHHHHCCCcEEEE
Confidence            99999999999999999998764

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=99.78  E-value=1.6e-18  Score=131.37  Aligned_cols=89  Identities=21%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceEE
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFIL  119 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l~  119 (149)
                      .++||+.++|++|+++|++++|+||++. . ....++.+|+..+|+.+.      ..||+|..+.++.  .+++|++|++
T Consensus       105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~  182 (203)
T TIGR02252       105 QVYPDAIKLLKDLRERGLILGVISNFDS-R-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALH  182 (203)
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCch-h-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence            4689999999999999999999999875 4 478899999998888662      3477774444333  5677899999


Q ss_pred             EeehH-hHHHHHHHhCCchh
Q 032013          120 FVDLF-CFMYAAAYVGCDLY  138 (149)
Q Consensus       120 ~eDs~-~gi~aa~~ag~~~~  138 (149)
                      ++|++ ++|++|++|||++|
T Consensus       183 IgD~~~~Di~~A~~aG~~~i  202 (203)
T TIGR02252       183 IGDSLRNDYQGARAAGWRAL  202 (203)
T ss_pred             ECCCchHHHHHHHHcCCeee
Confidence            99997 89999999999986

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=99.77  E-value=1.8e-18  Score=128.03  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=73.6

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      .+++||+.++|++|+++|++++++||++...  .....++|+..+|+.+.      ..||+|..+..+.  .+++|++|+
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~--~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~  161 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH--AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL  161 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence            5789999999999999999999999998764  44445589988888652      3466664444333  457889999


Q ss_pred             EEeehHhHHHHHHHhCCchhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++|++.+++||+++|+++|.
T Consensus       162 ~vgD~~~di~aA~~~G~~~i~  182 (183)
T TIGR01509       162 FVDDSPAGIEAAKAAGMHTVL  182 (183)
T ss_pred             EEcCCHHHHHHHHHcCCEEEe
Confidence            999999999999999999875

HAD subfamilies caused by an overly broad single model.

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=99.76  E-value=2.1e-18  Score=129.08  Aligned_cols=89  Identities=18%  Similarity=0.089  Sum_probs=73.8

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-----c-----cCCChhHHHHHH--hhCCC
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-----R-----LSCCIMCIIFFL--FFFSI  114 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-----~-----~~p~p~~~i~~~--~~~~~  114 (149)
                      .+++||+.++|++|+   ++++|+||++... +...++.+|+..+|+.+.     .     .||+|..+.++.  .++.|
T Consensus        83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~-~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~  158 (184)
T TIGR01993        83 LKPDPELRNLLLRLP---GRKIIFTNGDRAH-ARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDP  158 (184)
T ss_pred             CCCCHHHHHHHHhCC---CCEEEEeCCCHHH-HHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence            457899999999997   5799999999988 799999999999998652     1     277774443333  56788


Q ss_pred             cceEEEeehHhHHHHHHHhCCchhh
Q 032013          115 SAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       115 ~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      ++|++++|++.+|+||+++|++++.
T Consensus       159 ~~~l~vgD~~~di~aA~~~G~~~i~  183 (184)
T TIGR01993       159 ERAIFFDDSARNIAAAKALGMKTVL  183 (184)
T ss_pred             cceEEEeCCHHHHHHHHHcCCEEee
Confidence            9999999999999999999999874

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PRK09449 dUMP phosphatase; Provisional

Probab=99.76  E-value=1.9e-18  Score=132.69  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=76.7

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHHh--hCCC-cce
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFLF--FFSI-SAF  117 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~~--~~~~-~~~  117 (149)
                      ..++||+.++|++|+ +|++++|+||++... +...++.+|+..+|+.+.      ..||+|.++..+..  ++.+ ++|
T Consensus        94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~  171 (224)
T PRK09449         94 CTPLPGAVELLNALR-GKVKMGIITNGFTEL-QQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV  171 (224)
T ss_pred             CccCccHHHHHHHHH-hCCeEEEEeCCcHHH-HHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence            468899999999999 579999999999888 788999999999998762      34777744444444  3444 689


Q ss_pred             EEEeehH-hHHHHHHHhCCchhhhhh
Q 032013          118 ILFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       118 l~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      ++++||+ ++|.+|++|||+++.+.+
T Consensus       172 ~~vgD~~~~Di~~A~~aG~~~i~~~~  197 (224)
T PRK09449        172 LMVGDNLHSDILGGINAGIDTCWLNA  197 (224)
T ss_pred             EEEcCCcHHHHHHHHHCCCcEEEECC
Confidence            9999998 799999999999887653

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=99.75  E-value=2.6e-18  Score=131.18  Aligned_cols=92  Identities=18%  Similarity=0.197  Sum_probs=79.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----h-hCCCc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----F-FFSIS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~-~~~~~  115 (149)
                      .+++||+.++|++|+++ ++++++||+.... +...++.+++..+|+.+.      ..||+|  .+|..    . +++|+
T Consensus        96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~-~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~--~~~~~~~~~~~~~~~~  171 (224)
T TIGR02254        96 HQLLPGAFELMENLQQK-FRLYIVTNGVRET-QYKRLRKSGLFPFFDDIFVSEDAGIQKPDK--EIFNYALERMPKFSKE  171 (224)
T ss_pred             CeeCccHHHHHHHHHhc-CcEEEEeCCchHH-HHHHHHHCCcHhhcCEEEEcCccCCCCCCH--HHHHHHHHHhcCCCch
Confidence            46899999999999999 9999999999888 699999999999998763      236666  55554    4 67889


Q ss_pred             ceEEEeehH-hHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      +|++++||+ +++++|+++||+++.+.+
T Consensus       172 ~~v~igD~~~~di~~A~~~G~~~i~~~~  199 (224)
T TIGR02254       172 EVLMIGDSLTADIKGGQNAGLDTCWMNP  199 (224)
T ss_pred             heEEECCCcHHHHHHHHHCCCcEEEECC
Confidence            999999998 899999999999998865

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=99.75  E-value=4.8e-18  Score=136.33  Aligned_cols=92  Identities=17%  Similarity=0.039  Sum_probs=72.3

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC---cccc-----cccCCChhHHHHHH--hhCCCcce
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM---FVPM-----VRLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~---f~~~-----~~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      +++||+.++|++|+++|++++|+||++... +..+++..+...+   |+.+     ...||+|.++..+.  .+++|++|
T Consensus       144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~-~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~  222 (286)
T PLN02779        144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKA-VSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRC  222 (286)
T ss_pred             CchhhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHE
Confidence            578999999999999999999999999888 6888877643223   2221     23477774444443  56778999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++++|+++||+||++|||++|.+
T Consensus       223 l~IGDs~~Di~aA~~aG~~~i~v  245 (286)
T PLN02779        223 VVVEDSVIGLQAAKAAGMRCIVT  245 (286)
T ss_pred             EEEeCCHHhHHHHHHcCCEEEEE
Confidence            99999999999999999998875

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=99.75  E-value=1.8e-18  Score=131.34  Aligned_cols=92  Identities=18%  Similarity=0.112  Sum_probs=73.9

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH-cCCCCCcccc------cccCCChhHHHHHH----hhCCCcc
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPM------VRLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~gl~~~f~~~------~~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      .++||+.++|++|+++|++++|+||++... ....+.. .++..+|+.+      ...||+|  .+|..    .+++|++
T Consensus        84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~-~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p--~~~~~~~~~~~~~p~~  160 (199)
T PRK09456         84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEVRAAADHIYLSQDLGMRKPEA--RIYQHVLQAEGFSAAD  160 (199)
T ss_pred             ccCHHHHHHHHHHHhCCCcEEEEcCCchhh-HHHHHhhchhHHHhcCEEEEecccCCCCCCH--HHHHHHHHHcCCChhH
Confidence            578999999999999999999999998776 4555544 3666677654      2347777  55554    5678899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      |++++|++.+|.+|+++|++++.+..
T Consensus       161 ~l~vgD~~~di~aA~~aG~~~i~~~~  186 (199)
T PRK09456        161 AVFFDDNADNIEAANALGITSILVTD  186 (199)
T ss_pred             eEEeCCCHHHHHHHHHcCCEEEEecC
Confidence            99999999999999999999987653

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=99.75  E-value=1.9e-18  Score=125.63  Aligned_cols=94  Identities=20%  Similarity=0.186  Sum_probs=79.2

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ...++.||+.++|+.|+++|++++++||++... +...++.+|+..+|+.+.      ..||+|..+..+.  .+++|++
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~-~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~  152 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRER-IERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEE  152 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHH-HHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGG
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCccc-ccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcce
Confidence            457899999999999999999999999999888 699999999998887652      2366664433333  5688899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      |++++|++.++++|++||++++.
T Consensus       153 ~~~vgD~~~d~~~A~~~G~~~i~  175 (176)
T PF13419_consen  153 ILFVGDSPSDVEAAKEAGIKTIW  175 (176)
T ss_dssp             EEEEESSHHHHHHHHHTTSEEEE
T ss_pred             EEEEeCCHHHHHHHHHcCCeEEe
Confidence            99999999999999999999874

...

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=99.75  E-value=3.3e-18  Score=130.41  Aligned_cols=97  Identities=19%  Similarity=0.130  Sum_probs=74.2

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHH-HHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDI-AKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i-~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ...++||+.++|++|+++|++++|+||++.... ....+...++.++|+.+.      ..||+|..+..+.  .+++|++
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~  171 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEE  171 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHH
Confidence            356899999999999999999999999875430 123344467777777652      2477874444433  5677899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      |++++|++.+|.+|++|||+++.+.+
T Consensus       172 ~l~i~D~~~di~aA~~aG~~~i~v~~  197 (211)
T TIGR02247       172 CVFLDDLGSNLKPAAALGITTIKVSD  197 (211)
T ss_pred             eEEEcCCHHHHHHHHHcCCEEEEECC
Confidence            99999999999999999999987654

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PHA02597 30

Probab=99.75  E-value=5.4e-18  Score=128.13  Aligned_cols=94  Identities=12%  Similarity=0.008  Sum_probs=72.1

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc----ccc---cccCCChhHHHHHHhhCCCcceE
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF----VPM---VRLSCCIMCIIFFLFFFSISAFI  118 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f----~~~---~~~~p~p~~~i~~~~~~~~~~~l  118 (149)
                      ...++||+.++|++|+++ ++++++||++... ....++.+++..+|    +.+   ...+|+|.+..++...+++++|+
T Consensus        72 ~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~-~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~~~~~v  149 (197)
T PHA02597         72 YLSAYDDALDVINKLKED-YDFVAVTALGDSI-DALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYGDRVVC  149 (197)
T ss_pred             hccCCCCHHHHHHHHHhc-CCEEEEeCCccch-hHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhCCCcEE
Confidence            356899999999999997 5678888877665 45566777776544    333   23477775555555666788899


Q ss_pred             EEeehHhHHHHHHHh--CCchhhhh
Q 032013          119 LFVDLFCFMYAAAYV--GCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~a--g~~~~~~~  141 (149)
                      +++||.++++||++|  ||+++.+.
T Consensus       150 ~vgDs~~di~aA~~a~~Gi~~i~~~  174 (197)
T PHA02597        150 FVDDLAHNLDAAHEALSQLPVIHML  174 (197)
T ss_pred             EeCCCHHHHHHHHHHHcCCcEEEec
Confidence            999999999999999  99998764

2 hypothetical protein; Provisional

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=99.74  E-value=1.2e-17  Score=119.49  Aligned_cols=107  Identities=21%  Similarity=0.210  Sum_probs=81.7

Q ss_pred             cEEEEecCCccccccccccccCCCC-----ccCccHHHHHHHHHHCCceEEEEeCC-CchHHHHHHHHHcC-------CC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIP-----YLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTFLHKLG-------IH   89 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~-----~~~pg~~e~L~~Lk~~Gi~i~IaT~~-~~~~i~~~~l~~~g-------l~   89 (149)
                      |+++||+|||||+++..  ...+..     +++||+.++|++|+++|++++++||+ +... +...++..+       +.
T Consensus         1 kli~~DlD~Tl~~~~~~--~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~-~~~~l~~~~~~~~i~~l~   77 (128)
T TIGR01681         1 KVIVFDLDNTLWTGENI--VVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHV-AYELLKIFEDFGIIFPLA   77 (128)
T ss_pred             CEEEEeCCCCCCCCCcc--cccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH-HHHHHHhccccccchhhH
Confidence            57999999999985321  011101     37899999999999999999999999 6665 678888888       78


Q ss_pred             CCccccccc--CCChhHHHHHH--hh--CCCcceEEEeehHhHHHHHHH
Q 032013           90 SMFVPMVRL--SCCIMCIIFFL--FF--FSISAFILFVDLFCFMYAAAY  132 (149)
Q Consensus        90 ~~f~~~~~~--~p~p~~~i~~~--~~--~~~~~~l~~eDs~~gi~aa~~  132 (149)
                      ++|+...+.  +|+|.++..+.  .+  +.|++|++|||++..+.+.++
T Consensus        78 ~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~~  126 (128)
T TIGR01681        78 EYFDPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDNNEEVDY  126 (128)
T ss_pred             hhhhhhhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhHHHHHHh
Confidence            888876533  56665444444  66  788999999999999987654

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=99.74  E-value=2.2e-17  Score=123.09  Aligned_cols=116  Identities=16%  Similarity=0.204  Sum_probs=84.4

Q ss_pred             ccEEEEecCCcccccccc--ccccCCCC-ccCccHHHHHHHHHHCCceEEEEeCCCch------------HHHHHHHHHc
Q 032013           22 PRLVVFDLDYTLWPFYCE--CCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPAP------------DIAKTFLHKL   86 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~--~~~~~~~~-~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~------------~i~~~~l~~~   86 (149)
                      .+.++||+||||++....  +..+.+.. .++||+.++|++|+++|++++|+||++..            . +...++++
T Consensus        13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~-i~~~l~~~   91 (166)
T TIGR01664        13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNK-IEAFLEKL   91 (166)
T ss_pred             CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHH-HHHHHHHc
Confidence            588999999999984110  10111112 26899999999999999999999998763            3 47788999


Q ss_pred             CCCCCcccc----cccCCChhHHHHHH--hh--CCCcceEEEeehH--------hHHHHHHHhCCchh
Q 032013           87 GIHSMFVPM----VRLSCCIMCIIFFL--FF--FSISAFILFVDLF--------CFMYAAAYVGCDLY  138 (149)
Q Consensus        87 gl~~~f~~~----~~~~p~p~~~i~~~--~~--~~~~~~l~~eDs~--------~gi~aa~~ag~~~~  138 (149)
                      |+...+...    ...||+|....++.  .+  +++++|+.+.|++        ++|+||++|||+.+
T Consensus        92 gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~  159 (166)
T TIGR01664        92 KVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFK  159 (166)
T ss_pred             CCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcC
Confidence            985411111    13478775555554  34  5679999999986        79999999999875

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=99.74  E-value=9.6e-18  Score=124.52  Aligned_cols=117  Identities=16%  Similarity=0.007  Sum_probs=89.8

Q ss_pred             cEEEEecCCccccccc--cccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC---------------chHHHHHHHHH
Q 032013           23 RLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLHK   85 (149)
Q Consensus        23 k~vifDlDGTLld~~~--~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~---------------~~~i~~~~l~~   85 (149)
                      ++++||.||||++...  ++....+..+++||+.++|++|+++|++++|+||++               ... +...++.
T Consensus         2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~-~~~~l~~   80 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNL-MLQIFRS   80 (161)
T ss_pred             CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHH
Confidence            5799999999998311  112222346799999999999999999999999973               334 5778899


Q ss_pred             cCCCCCcccc-----------cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           86 LGIHSMFVPM-----------VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        86 ~gl~~~f~~~-----------~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|+.  |+..           ...||+|....++.  .++++++|+.+.|+.+++.+|+++||+++.+.+
T Consensus        81 ~gl~--fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~  148 (161)
T TIGR01261        81 QGII--FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDE  148 (161)
T ss_pred             CCCc--eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence            9986  3211           24578885555554  456779999999999999999999999998765

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=99.74  E-value=9.5e-18  Score=125.57  Aligned_cols=117  Identities=15%  Similarity=0.004  Sum_probs=95.5

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccH-HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHA-KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~-~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~   98 (149)
                      +.+|+++||+||||+|+..+|+.+++..+-+... -..++.|+++|++++|+||++... ++..++.+|+..+|+..   
T Consensus         5 ~~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~-~~~~l~~lgi~~~f~~~---   80 (169)
T TIGR02726         5 KNIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA-VRHRAEELKIKRFHEGI---   80 (169)
T ss_pred             ccCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH-HHHHHHHCCCcEEEecC---
Confidence            4489999999999999988887776644444222 256899999999999999999998 79999999999888753   


Q ss_pred             CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +|+|.+...+.  .++++++|+.|.|++|++.++++||+...+-
T Consensus        81 kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~  124 (169)
T TIGR02726        81 KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG  124 (169)
T ss_pred             CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECc
Confidence            68885555554  4566789999999999999999999877653

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.73  E-value=9.5e-18  Score=154.17  Aligned_cols=92  Identities=24%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC-CCccccc------ccCCChhHHHHHH--hhCCCcceEE
Q 032013           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMV------RLSCCIMCIIFFL--FFFSISAFIL  119 (149)
Q Consensus        49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~-~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l~  119 (149)
                      ++||+.++|++|+++|++++|+||+.... ++..++++|+. .+|+.+.      ..||+|..+..+.  .++.|++|++
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~-~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~  240 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADRIK-VDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV  240 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence            68999999999999999999999999988 79999999996 6787662      3477774444444  5577899999


Q ss_pred             EeehHhHHHHHHHhCCchhhhh
Q 032013          120 FVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       120 ~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +||++.|++||++|||++|.+.
T Consensus       241 IgDs~~Di~AA~~aGm~~I~v~  262 (1057)
T PLN02919        241 IEDALAGVQAARAAGMRCIAVT  262 (1057)
T ss_pred             EcCCHHHHHHHHHcCCEEEEEC
Confidence            9999999999999999998764

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=99.71  E-value=6.2e-17  Score=122.53  Aligned_cols=80  Identities=19%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-----ccCCChhHHHHHH--hhCCCcceEEEeehHh
Q 032013           53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-----RLSCCIMCIIFFL--FFFSISAFILFVDLFC  125 (149)
Q Consensus        53 ~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-----~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~  125 (149)
                      ..++|+.|+++|++++|+||++... +...++.+|+..+|+.+.     ..||+|.....+.  .++++++|++++|+++
T Consensus       111 ~~~~L~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vGD~~~  189 (197)
T TIGR01548       111 PKGLLRELHRAPKGMAVVTGRPRKD-AAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVGDTVD  189 (197)
T ss_pred             HHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEeCCHH
Confidence            4799999999999999999999998 799999999999997652     2277785544444  5677899999999999


Q ss_pred             HHHHHHHh
Q 032013          126 FMYAAAYV  133 (149)
Q Consensus       126 gi~aa~~a  133 (149)
                      ||+||++|
T Consensus       190 Di~aA~~a  197 (197)
T TIGR01548       190 DIITGRKA  197 (197)
T ss_pred             HHHHHHhC
Confidence            99999986

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=99.71  E-value=3.9e-17  Score=120.13  Aligned_cols=112  Identities=18%  Similarity=0.089  Sum_probs=86.6

Q ss_pred             ccEEEEecCCccccccccccccCCCC---ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIP---YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~---~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~   98 (149)
                      +++++||+||||+++.+.....++..   .+.++  .++++|+++|++++|+||++... +...++++|+..+|+.   .
T Consensus         1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~-~~~~l~~~gi~~~~~~---~   74 (154)
T TIGR01670         1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL-VEDRCKTLGITHLYQG---Q   74 (154)
T ss_pred             CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH-HHHHHHHcCCCEEEec---c
Confidence            47899999999999644333222111   12233  37999999999999999999998 7999999999988875   3


Q ss_pred             CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +|+|.....+.  .++++++|+.+.|+.+++.++++||+...|
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~v  117 (154)
T TIGR01670        75 SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSVAV  117 (154)
T ss_pred             cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEec
Confidence            66775555444  456779999999999999999999997544

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=99.71  E-value=7.9e-17  Score=120.24  Aligned_cols=110  Identities=18%  Similarity=0.087  Sum_probs=88.2

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC-chHHHHHHHHHcCCCCCccccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~-~~~i~~~~l~~~gl~~~f~~~~~~   98 (149)
                      ..++++++|+||||+..      .  ...++|++.++|++|+++|++++|+||++ ... +..+++.+++..++   ...
T Consensus        23 ~~v~~vv~D~Dgtl~~~------~--~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~-~~~~~~~~gl~~~~---~~~   90 (170)
T TIGR01668        23 VGIKGVVLDKDNTLVYP------D--HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQR-AKAVEKALGIPVLP---HAV   90 (170)
T ss_pred             CCCCEEEEecCCccccC------C--CCCcChhHHHHHHHHHHcCCEEEEEeCCchHHH-HHHHHHHcCCEEEc---CCC
Confidence            45799999999999973      1  23689999999999999999999999998 455 67777888875443   345


Q ss_pred             CCChhHHHHHH--hhCCCcceEEEeehH-hHHHHHHHhCCchhhhh
Q 032013           99 SCCIMCIIFFL--FFFSISAFILFVDLF-CFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~-~gi~aa~~ag~~~~~~~  141 (149)
                      ||+|.....+.  .++++++|+.+.|+. .+|.+|++|||+++.+.
T Consensus        91 KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~  136 (170)
T TIGR01668        91 KPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVE  136 (170)
T ss_pred             CCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEc
Confidence            88885444443  456779999999998 79999999999988763

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=99.70  E-value=4.8e-17  Score=124.53  Aligned_cols=120  Identities=23%  Similarity=0.111  Sum_probs=92.3

Q ss_pred             CCCccEEEEecCCcccccccccc---------------------------------------------ccCCCCccCccH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA   53 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~---------------------------------------------~~~~~~~~~pg~   53 (149)
                      ..++++++||+||||++.+..+.                                             .-.+..++.||+
T Consensus        11 ~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   90 (219)
T TIGR00338        11 LRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTEGA   90 (219)
T ss_pred             hccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCCCH
Confidence            34478999999999999643200                                             011335789999


Q ss_pred             HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------------c--ccCCChhHHHHHH----hhCCCc
Q 032013           54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------------V--RLSCCIMCIIFFL----FFFSIS  115 (149)
Q Consensus        54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------------~--~~~p~p~~~i~~~----~~~~~~  115 (149)
                      .++|+.|+++|++++|+||+.... +...++.+|+..+|...            .  ...+.|.+.+|..    .+++++
T Consensus        91 ~~~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  169 (219)
T TIGR00338        91 EELVKTLKEKGYKVAVISGGFDLF-AEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGISPE  169 (219)
T ss_pred             HHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCCHH
Confidence            999999999999999999999887 79999999998887531            0  1122234466664    567789


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +|++++||.+++.+|++||+.+.+
T Consensus       170 ~~i~iGDs~~Di~aa~~ag~~i~~  193 (219)
T TIGR00338       170 NTVAVGDGANDLSMIKAAGLGIAF  193 (219)
T ss_pred             HEEEEECCHHHHHHHHhCCCeEEe
Confidence            999999999999999999998643

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=99.69  E-value=1.2e-16  Score=115.93  Aligned_cols=85  Identities=19%  Similarity=0.146  Sum_probs=69.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-----ccCCChhHHHHHH--hhCCCcceEE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-----RLSCCIMCIIFFL--FFFSISAFIL  119 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-----~~~p~p~~~i~~~--~~~~~~~~l~  119 (149)
                      ....||+.++|+.|+++|++++|+||+++.. +...++.+ +..+|+.+.     ..||+|.+..++.  .++++ +|++
T Consensus        63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~  139 (154)
T TIGR01549        63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRA-QKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLH  139 (154)
T ss_pred             heeccCHHHHHHHHHHCcCeEEEEeCCchHH-HHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEE
Confidence            4567999999999999999999999999988 68888887 667776541     2477775544444  45666 9999


Q ss_pred             EeehHhHHHHHHHhC
Q 032013          120 FVDLFCFMYAAAYVG  134 (149)
Q Consensus       120 ~eDs~~gi~aa~~ag  134 (149)
                      ++|++.+++||++||
T Consensus       140 iGDs~~Di~aa~~aG  154 (154)
T TIGR01549       140 VGDNLNDIEGARNAG  154 (154)
T ss_pred             EeCCHHHHHHHHHcc
Confidence            999999999999998

HAD subfamilies caused by an overly broad single model.

>PLN02954 phosphoserine phosphatase

Probab=99.68  E-value=1.6e-16  Score=122.00  Aligned_cols=92  Identities=18%  Similarity=0.194  Sum_probs=72.6

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC--CCcccc------------------cccCCChhHHH
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPM------------------VRLSCCIMCII  106 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~--~~f~~~------------------~~~~p~p~~~i  106 (149)
                      ..++||+.++|++|+++|++++|+||+.... ++.+++.+|+.  .+|...                  ...+++|.+..
T Consensus        83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~  161 (224)
T PLN02954         83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQM-IAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ  161 (224)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence            4688999999999999999999999999998 79999999996  345310                  01234564444


Q ss_pred             HHHhhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          107 FFLFFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       107 ~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .+....+.++|+++.||.++++||+++|+.+++
T Consensus       162 ~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~  194 (224)
T PLN02954        162 HIKKKHGYKTMVMIGDGATDLEARKPGGADLFI  194 (224)
T ss_pred             HHHHHcCCCceEEEeCCHHHHHhhhcCCCCEEE
Confidence            444455678999999999999999999998766

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.67  E-value=2.9e-16  Score=125.74  Aligned_cols=118  Identities=14%  Similarity=0.076  Sum_probs=92.1

Q ss_pred             CccEEEEecCCccccccc----cccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC-Ccccc
Q 032013           21 LPRLVVFDLDYTLWPFYC----ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPM   95 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~----~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~-~f~~~   95 (149)
                      ..+.+++|+|||+.+...    .|... ....++|++.++|+.|+++|++++++||++... .+..++.+++.. +|+.+
T Consensus       157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~-~~~~l~~l~~~~~~f~~i  234 (300)
T PHA02530        157 LPKAVIFDIDGTLAKMGGRSPYDWTKV-KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC-EEDTVEWLRQTDIWFDDL  234 (300)
T ss_pred             CCCEEEEECCCcCcCCCCCCccchhhc-ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh-HHHHHHHHHHcCCchhhh
Confidence            357899999999998422    12211 135789999999999999999999999999988 799999999986 77655


Q ss_pred             cc-------------cCCChhHHHHHH--hhC-CCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           96 VR-------------LSCCIMCIIFFL--FFF-SISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        96 ~~-------------~~p~p~~~i~~~--~~~-~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      .+             .+|+|....+..  .+. .+++|++|+|++++|.+|++|||+++-+
T Consensus       235 ~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v  295 (300)
T PHA02530        235 IGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV  295 (300)
T ss_pred             hCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence            32             266664444443  344 4589999999999999999999998754

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=99.67  E-value=9.8e-17  Score=125.20  Aligned_cols=89  Identities=12%  Similarity=0.020  Sum_probs=71.1

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|++|+++ ++++++||++..      ++..|+..||+.+.      ..||+|.++..+.  .+++|++|+
T Consensus       112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~  184 (238)
T PRK10748        112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL  184 (238)
T ss_pred             CCCCccHHHHHHHHHcC-CCEEEEECCCch------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence            56779999999999976 999999998754      26689988888762      3477774433333  467789999


Q ss_pred             EEeeh-HhHHHHHHHhCCchhhhhh
Q 032013          119 LFVDL-FCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs-~~gi~aa~~ag~~~~~~~~  142 (149)
                      .+.|+ ..+|.+|++|||+++.+.|
T Consensus       185 ~VGD~~~~Di~~A~~aG~~~i~v~~  209 (238)
T PRK10748        185 HVGDDLTTDVAGAIRCGMQACWINP  209 (238)
T ss_pred             EEcCCcHHHHHHHHHCCCeEEEEcC
Confidence            99999 5999999999999987765

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=99.67  E-value=1.9e-16  Score=119.00  Aligned_cols=93  Identities=16%  Similarity=-0.013  Sum_probs=73.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCC--------hhHHHHHH---
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCC--------IMCIIFFL---  109 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~--------p~~~i~~~---  109 (149)
                      .+++||+.++|++|+++|++++|+||+.... ++..++.+|+..+|....      ..+|+        +.+.++..   
T Consensus        79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~  157 (201)
T TIGR01491        79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCL-AKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR  157 (201)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence            5689999999999999999999999999888 799999999887765321      11222        21123222   


Q ss_pred             -hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          110 -FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       110 -~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                       .++++++|++++||.+++.+|++||+...+.
T Consensus       158 ~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~  189 (201)
T TIGR01491       158 ELNPSLTETVAVGDSKNDLPMFEVADISISLG  189 (201)
T ss_pred             HhCCCHHHEEEEcCCHhHHHHHHhcCCeEEEC
Confidence             4567799999999999999999999988774

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=99.67  E-value=2.4e-16  Score=118.97  Aligned_cols=113  Identities=18%  Similarity=0.104  Sum_probs=86.0

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHH---HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK---GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR   97 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~---e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~   97 (149)
                      .+|+|++|+||||+++.......++  ...+-..   ..++.|+++|++++|+||++... +..+++.+|+..+|.   +
T Consensus        20 ~ikli~~D~Dgtl~~~~i~~~~~~~--~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~-v~~~l~~lgl~~~f~---g   93 (183)
T PRK09484         20 NIRLLICDVDGVFSDGLIYMGNNGE--ELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKL-VEDRMTTLGITHLYQ---G   93 (183)
T ss_pred             CceEEEEcCCeeeecCEEEEcCCCC--EEEEEeccchHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCceeec---C
Confidence            4899999999999986332222222  1222222   57899999999999999999998 799999999988886   3


Q ss_pred             cCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           98 LSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        98 ~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .++.|.+...+.  .++++++|+.+.|+.+++.++++||+.+.|
T Consensus        94 ~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v  137 (183)
T PRK09484         94 QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAV  137 (183)
T ss_pred             CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEec
Confidence            455554433333  567789999999999999999999998654

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.66  E-value=1.8e-16  Score=115.80  Aligned_cols=114  Identities=14%  Similarity=-0.087  Sum_probs=84.9

Q ss_pred             cEEEEecCCcccccccc----cccc-------------CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013           23 RLVVFDLDYTLWPFYCE----CCYE-------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (149)
Q Consensus        23 k~vifDlDGTLld~~~~----~~~~-------------~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~   85 (149)
                      .++++|+||||+.....    +...             ...+.++||+.++|++|+ ++++++|+||++... ++.+++.
T Consensus         3 ~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~-~~~il~~   80 (148)
T smart00577        3 KTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY-ADPVLDL   80 (148)
T ss_pred             cEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH-HHHHHHH
Confidence            46899999999996311    1100             122467999999999998 579999999999999 7999999


Q ss_pred             cCCCCC-cccc----cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           86 LGIHSM-FVPM----VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        86 ~gl~~~-f~~~----~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++..+ |+.+    ....++|. ++...  .+.+|++|++||||++++++|.++|+++--
T Consensus        81 l~~~~~~f~~i~~~~d~~~~KP~-~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~  140 (148)
T smart00577       81 LDPKKYFGYRRLFRDECVFVKGK-YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKP  140 (148)
T ss_pred             hCcCCCEeeeEEECccccccCCe-EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecC
Confidence            998654 4554    23344453 22222  567889999999999999999999987643

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=99.66  E-value=9.1e-16  Score=120.44  Aligned_cols=113  Identities=17%  Similarity=0.060  Sum_probs=84.2

Q ss_pred             ccEEEEecCCcccccccc-------ccc------------------cCCCCccCccHHHHHHHHHHCCceEEEEeCC---
Q 032013           22 PRLVVFDLDYTLWPFYCE-------CCY------------------EDEIPYLYPHAKGILEALKEKGIHVAVASRS---   73 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~-------~~~------------------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---   73 (149)
                      |-+|+||+||||+|+...       +..                  ......+.+++.++|++++++|++++++||+   
T Consensus        63 p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~  142 (237)
T TIGR01672        63 PIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPG  142 (237)
T ss_pred             CeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            458999999999997552       000                  0122356666999999999999999999998   


Q ss_pred             -CchHHHHHHHHHcCCCCCcccccc------cCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           74 -PAPDIAKTFLHKLGIHSMFVPMVR------LSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        74 -~~~~i~~~~l~~~gl~~~f~~~~~------~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                       .... ++.+++.+|+..+|+.+.+      .||+|  ..++. ..+  -|+.+.||.++|.||++||++++-.
T Consensus       143 k~~~~-a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~--~~~l~-~~~--i~i~vGDs~~DI~aAk~AGi~~I~V  210 (237)
T TIGR01672       143 KTDTV-SKTLAKNFHIPAMNPVIFAGDKPGQYQYTK--TQWIQ-DKN--IRIHYGDSDNDITAAKEAGARGIRI  210 (237)
T ss_pred             cCHHH-HHHHHHHhCCchheeEEECCCCCCCCCCCH--HHHHH-hCC--CeEEEeCCHHHHHHHHHCCCCEEEE
Confidence             4445 6888889999998876532      34444  43332 223  3899999999999999999997654

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=99.64  E-value=1.8e-15  Score=105.17  Aligned_cols=114  Identities=26%  Similarity=0.225  Sum_probs=87.2

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----ccc-
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----VRL-   98 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----~~~-   98 (149)
                      +++||+||||++.+..... .....+.|++.++|++|+++|++++++||+.+.. +...++..++..+++..    ... 
T Consensus         1 ~~vfD~D~tl~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~   78 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAE-IEELELYPGVKEALKELKEKGIKLALATNKSRRE-VLELLEELGLDDYFDPVITSNGAAI   78 (139)
T ss_pred             CeEEccCCceEccCccccc-cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHH-HHHHHHHcCCchhhhheeccchhhh
Confidence            4799999999985322111 2335799999999999999999999999999888 79999999985555433    111 


Q ss_pred             -----------------CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           99 -----------------SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        99 -----------------~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                                       +|+|.....+.  .+.++++++.+.|+.+++.+|+++|++++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~  138 (139)
T cd01427          79 YYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA  138 (139)
T ss_pred             hcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence                             56664444444  334558899999999999999999998764

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.63  E-value=1.1e-15  Score=117.00  Aligned_cols=94  Identities=17%  Similarity=0.146  Sum_probs=77.9

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      .++.|++.+.|+.++++ ++++++||+.... ....++++|+.++|+.+.      ..||+|..+.+..  .++.|++|+
T Consensus        98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~-~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l  175 (229)
T COG1011          98 LPDYPEALEALKELGKK-YKLGILTNGARPH-QERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL  175 (229)
T ss_pred             CccChhHHHHHHHHHhh-ccEEEEeCCChHH-HHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence            67899999999999999 9999999998887 799999999999999872      3477774444443  556789999


Q ss_pred             EEeehHhHH-HHHHHhCCchhhhhh
Q 032013          119 LFVDLFCFM-YAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~~gi-~aa~~ag~~~~~~~~  142 (149)
                      .+.||+.-. .+|+++||+++.+.|
T Consensus       176 ~VgD~~~~di~gA~~~G~~~vwi~~  200 (229)
T COG1011         176 FVGDSLENDILGARALGMKTVWINR  200 (229)
T ss_pred             EECCChhhhhHHHHhcCcEEEEECC
Confidence            999987666 999999999986654

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=99.60  E-value=7.6e-15  Score=109.84  Aligned_cols=121  Identities=33%  Similarity=0.474  Sum_probs=83.2

Q ss_pred             CccEEEEecCCcccccccccc----------------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013           21 LPRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~----------------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~   84 (149)
                      .|++|+||+|+|||+.|++.+                +.++.+.++|++.++|+.|+++|+++++||.+.....+++.|+
T Consensus         2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~   81 (169)
T PF12689_consen    2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK   81 (169)
T ss_dssp             S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred             CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence            489999999999999988843                4567789999999999999999999999997766665899999


Q ss_pred             HcCCC----------CCcccccccCCChhHHHHH----HhhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           85 KLGIH----------SMFVPMVRLSCCIMCIIFF----LFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        85 ~~gl~----------~~f~~~~~~~p~p~~~i~~----~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      .+++.          ++|+..+++..+- ...|-    +.+++.++-|+|.|-.--+....+-|...+...+
T Consensus        82 ~l~i~~~~~~~~~~~~~F~~~eI~~gsK-~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~  152 (169)
T PF12689_consen   82 LLEIDDADGDGVPLIEYFDYLEIYPGSK-TTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPD  152 (169)
T ss_dssp             HTT-C----------CCECEEEESSS-H-HHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SS
T ss_pred             hcCCCccccccccchhhcchhheecCch-HHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCC
Confidence            99999          9999988776533 23333    3677778999999999999998888877665443

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>TIGR01686 FkbH FkbH-like domain

Probab=99.59  E-value=7.8e-15  Score=119.35  Aligned_cols=114  Identities=18%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             CccEEEEecCCccccccccccccCC---CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH----cCCCCCcc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDE---IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK----LGIHSMFV   93 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~---~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~----~gl~~~f~   93 (149)
                      .+|++++|+|+|||.+-... ....   -..++|++.++|+.|+++|++++|+|+++... +...+++    +++.++|+
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e-~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~-a~~~l~~~~~~~~~~~~f~   79 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGE-DGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDD-AKKVFERRKDFILQAEDFD   79 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEcc-CCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHH-HHHHHHhCccccCcHHHee
Confidence            47899999999999862111 1111   12367999999999999999999999999988 7999999    89999998


Q ss_pred             ccc-ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCc
Q 032013           94 PMV-RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCD  136 (149)
Q Consensus        94 ~~~-~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~  136 (149)
                      .+. ..+|+|.....+.  .++++++|+++.|++..+.++++++=+
T Consensus        80 ~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~  125 (320)
T TIGR01686        80 ARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPV  125 (320)
T ss_pred             EEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCC
Confidence            864 3478886666665  556779999999999999999998754

The C-terminal portion of this domain is unique to this family (by BLAST).

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.59  E-value=4.5e-15  Score=115.37  Aligned_cols=96  Identities=21%  Similarity=0.216  Sum_probs=78.9

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---CC----CCCcccccccCCChhHHHHHH--hhCCCcc
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GI----HSMFVPMVRLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---gl----~~~f~~~~~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ..+++||+.++|++|+++|++++|+||++... ....+++.   ++    ..+|+...+.||+|..+..+.  .+++|++
T Consensus        93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~-~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e  171 (220)
T TIGR01691        93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPA-QKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE  171 (220)
T ss_pred             ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence            35799999999999999999999999999887 57777775   43    345565567788885555544  5678899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      |++++|+..++.||++|||+++.+.|
T Consensus       172 ~lfVgDs~~Di~AA~~AG~~ti~v~r  197 (220)
T TIGR01691       172 ILFLSDIINELDAARKAGLHTGQLVR  197 (220)
T ss_pred             EEEEeCCHHHHHHHHHcCCEEEEEEC
Confidence            99999999999999999999987765

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=99.58  E-value=1.3e-14  Score=111.85  Aligned_cols=95  Identities=14%  Similarity=-0.026  Sum_probs=71.6

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--Cc--ccc------cccCCChhH----------
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MF--VPM------VRLSCCIMC----------  104 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--~f--~~~------~~~~p~p~~----------  104 (149)
                      +..+++||+.++|++|+++|++++|+||+.... ++.+++++ +..  .+  +..      ...+|+|.+          
T Consensus        71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~  148 (219)
T PRK09552         71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFF-VYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCC  148 (219)
T ss_pred             hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHH-HHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCc
Confidence            346899999999999999999999999999888 79999987 543  22  111      234666643          


Q ss_pred             --HHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          105 --IIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       105 --~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                        .+--..+..+++|+.++||.+++.||++||+ ++...+
T Consensus       149 K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~-~~a~~~  187 (219)
T PRK09552        149 KPSLIRKLSDTNDFHIVIGDSITDLEAAKQADK-VFARDF  187 (219)
T ss_pred             hHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCc-ceeHHH
Confidence              2222245677899999999999999999999 444333

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=99.57  E-value=1.8e-14  Score=118.89  Aligned_cols=118  Identities=15%  Similarity=0.045  Sum_probs=89.4

Q ss_pred             ccEEEEecCCcccccc--ccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC---------------CchHHHHHHHH
Q 032013           22 PRLVVFDLDYTLWPFY--CECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---------------PAPDIAKTFLH   84 (149)
Q Consensus        22 ~k~vifDlDGTLld~~--~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---------------~~~~i~~~~l~   84 (149)
                      .+.++||.||||+...  .+.....+...++||+.++|++|+++|++++|+||+               +... +..+++
T Consensus         2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~-i~~iL~   80 (354)
T PRK05446          2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNL-MMQIFE   80 (354)
T ss_pred             CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHH-HHHHHH
Confidence            4689999999999841  111223344789999999999999999999999996               2334 567788


Q ss_pred             HcCCCCCcccc-----------cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           85 KLGIHSMFVPM-----------VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        85 ~~gl~~~f~~~-----------~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      .+++.  |+.+           ...||+|....++.  .++++++|+.+.|+.+++++|++|||+++.+++
T Consensus        81 ~~gl~--fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~  149 (354)
T PRK05446         81 SQGIK--FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR  149 (354)
T ss_pred             HcCCc--eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence            88874  3322           24588885555444  356779999999999999999999999887643

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=99.55  E-value=2.5e-14  Score=108.30  Aligned_cols=91  Identities=14%  Similarity=-0.005  Sum_probs=71.4

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------cc---cCCChhHHHHHHhhC
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------VR---LSCCIMCIIFFLFFF  112 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~~---~~p~p~~~i~~~~~~  112 (149)
                      +..+++||+.++|+.|+++ ++++|+||+.... ++..++++|+..+|...         .+   .+|+|........+.
T Consensus        65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~  142 (205)
T PRK13582         65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEF-AGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKS  142 (205)
T ss_pred             HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHH-HHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHH
Confidence            3456789999999999999 9999999999998 79999999998877531         11   133443333333455


Q ss_pred             CCcceEEEeehHhHHHHHHHhCCch
Q 032013          113 SISAFILFVDLFCFMYAAAYVGCDL  137 (149)
Q Consensus       113 ~~~~~l~~eDs~~gi~aa~~ag~~~  137 (149)
                      .+++|+.++||.+++.++++||+.+
T Consensus       143 ~~~~~v~iGDs~~D~~~~~aa~~~v  167 (205)
T PRK13582        143 LGYRVIAAGDSYNDTTMLGEADAGI  167 (205)
T ss_pred             hCCeEEEEeCCHHHHHHHHhCCCCE
Confidence            6689999999999999999999865

>PLN02811 hydrolase

Probab=99.54  E-value=1.5e-14  Score=111.33  Aligned_cols=95  Identities=18%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc--------cccCCChhHHHHHH--hh---CC
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--------VRLSCCIMCIIFFL--FF---FS  113 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~--------~~~~p~p~~~i~~~--~~---~~  113 (149)
                      ..++||+.++|+.|+++|++++|+||+.+..+....++..++.++|+.+        ...||+|..+..+.  .+   ++
T Consensus        77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~  156 (220)
T PLN02811         77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD  156 (220)
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence            5689999999999999999999999998765223344444666666543        23477885544444  32   77


Q ss_pred             CcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013          114 ISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       114 ~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +++|++++|+..|++||++|||++|.+.
T Consensus       157 ~~~~v~IgDs~~di~aA~~aG~~~i~v~  184 (220)
T PLN02811        157 PGKVLVFEDAPSGVEAAKNAGMSVVMVP  184 (220)
T ss_pred             ccceEEEeccHhhHHHHHHCCCeEEEEe
Confidence            8999999999999999999999998874

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=99.54  E-value=2.6e-14  Score=116.76  Aligned_cols=120  Identities=18%  Similarity=0.110  Sum_probs=90.4

Q ss_pred             CCCccEEEEecCCcccccccccc---------------------------------------------ccCCCCccCccH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA   53 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~---------------------------------------------~~~~~~~~~pg~   53 (149)
                      ...+++++||+||||+..+....                                             ...+..++.||+
T Consensus       107 ~~~~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~~~l~l~pGa  186 (322)
T PRK11133        107 LRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVRENLPLMPGL  186 (322)
T ss_pred             ccCCCEEEEECCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHHHhCCCChhH
Confidence            45589999999999997543300                                             001246799999


Q ss_pred             HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc----------------ccccCCChhHHHHHH--hhCCCc
Q 032013           54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP----------------MVRLSCCIMCIIFFL--FFFSIS  115 (149)
Q Consensus        54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~----------------~~~~~p~p~~~i~~~--~~~~~~  115 (149)
                      .+++++|+++|++++|+||+.... ++..++++++...+..                +...+|+|.....++  .+++++
T Consensus       187 ~elL~~Lk~~G~~~aIvSgg~~~~-~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi~~~  265 (322)
T PRK11133        187 TELVLKLQALGWKVAIASGGFTYF-ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLA  265 (322)
T ss_pred             HHHHHHHHHcCCEEEEEECCcchh-HHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCCChh
Confidence            999999999999999999999877 6888889998764421                011245664444443  457789


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +|+++.|+.|++.++.+||+.+.+
T Consensus       266 qtIaVGDg~NDl~m~~~AGlgiA~  289 (322)
T PRK11133        266 QTVAIGDGANDLPMIKAAGLGIAY  289 (322)
T ss_pred             hEEEEECCHHHHHHHHHCCCeEEe
Confidence            999999999999999999986654

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=99.51  E-value=1.5e-13  Score=107.90  Aligned_cols=115  Identities=17%  Similarity=0.068  Sum_probs=83.2

Q ss_pred             ccEEEEecCCcccccccc-------cc-----------------c-cCCCCccCccHHHHHHHHHHCCceEEEEeCCC--
Q 032013           22 PRLVVFDLDYTLWPFYCE-------CC-----------------Y-EDEIPYLYPHAKGILEALKEKGIHVAVASRSP--   74 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~-------~~-----------------~-~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~--   74 (149)
                      |-+|+||+|||++++.++       +.                 . ......+.||+.++|++|+++|++++++|||+  
T Consensus        63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~  142 (237)
T PRK11009         63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT  142 (237)
T ss_pred             CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            558999999999985332       00                 0 02335688889999999999999999999975  


Q ss_pred             -chHHHHHHHHHcCC--CCCcccccc----cCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013           75 -APDIAKTFLHKLGI--HSMFVPMVR----LSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        75 -~~~i~~~~l~~~gl--~~~f~~~~~----~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                       ....++.+++.+|+  .++|..+..    .|+++..  .++ ..  ..|+.++|+.+++.||++||++.+-..
T Consensus       143 k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~--~l~-~~--~i~I~IGDs~~Di~aA~~AGi~~I~v~  211 (237)
T PRK11009        143 KTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQ--WLK-KK--NIRIFYGDSDNDITAAREAGARGIRIL  211 (237)
T ss_pred             ccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHH--HHH-hc--CCeEEEcCCHHHHHHHHHcCCcEEEEe
Confidence             23225666777999  777765532    2455632  222 22  348999999999999999999987543

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=99.51  E-value=1e-14  Score=107.89  Aligned_cols=80  Identities=11%  Similarity=0.038  Sum_probs=63.6

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++||+.++|+       +++|+||++... +...++++|+..+|+.+      ...||+|..+..+.  .+++|++|
T Consensus        88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~-~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~  159 (175)
T TIGR01493        88 NLPPWPDSAAALA-------RVAILSNASHWA-FDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV  159 (175)
T ss_pred             cCCCCCchHHHHH-------HHhhhhCCCHHH-HHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence            3457888888888       389999999998 68999999999998764      24477774433333  56788999


Q ss_pred             EEEeehHhHHHHHHHh
Q 032013          118 ILFVDLFCFMYAAAYV  133 (149)
Q Consensus       118 l~~eDs~~gi~aa~~a  133 (149)
                      +.+.|+...+.+|+++
T Consensus       160 l~vgD~~~Di~~A~~~  175 (175)
T TIGR01493       160 LMVAAHQWDLIGARKF  175 (175)
T ss_pred             EeEecChhhHHHHhcC
Confidence            9999999999999875

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.44  E-value=4.4e-13  Score=99.56  Aligned_cols=87  Identities=17%  Similarity=0.168  Sum_probs=70.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc--------------------CC----Ch
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL--------------------SC----CI  102 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~--------------------~p----~p  102 (149)
                      .++.||+.++|+.|+++|++++|+||+.... ++..++.+++..+|+.+...                    .+    .+
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  149 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFF-IDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC  149 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence            5799999999999999999999999999888 79999999998888764310                    01    12


Q ss_pred             hHHHHHHhhCC-CcceEEEeehHhHHHHHHHhC
Q 032013          103 MCIIFFLFFFS-ISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       103 ~~~i~~~~~~~-~~~~l~~eDs~~gi~aa~~ag  134 (149)
                      .+.++...... +++|+.+.|+.+++.||++|+
T Consensus       150 K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d  182 (188)
T TIGR01489       150 KGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSD  182 (188)
T ss_pred             HHHHHHHHHhhcCceEEEECCCcchhchHhcCC
Confidence            23566665444 889999999999999999985

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=99.41  E-value=1e-12  Score=100.95  Aligned_cols=96  Identities=11%  Similarity=-0.108  Sum_probs=71.8

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc---c------cccCCChhH------------
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP---M------VRLSCCIMC------------  104 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~---~------~~~~p~p~~------------  104 (149)
                      ..++.||+.++|++|+++|++++|+||+.... ++.+++.++...++.+   .      ...+|+|.+            
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~  146 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDFF-VYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP  146 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence            46899999999999999999999999999887 7888988754444422   1      233666633            


Q ss_pred             HHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhhhhh
Q 032013          105 IIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRL  143 (149)
Q Consensus       105 ~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~~  143 (149)
                      .+.-.....+++++++.|+.+++.+|++||+ +++-++|
T Consensus       147 ~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~-~~ar~~l  184 (214)
T TIGR03333       147 SLIRKLSEPNDYHIVIGDSVTDVEAAKQSDL-CFARDYL  184 (214)
T ss_pred             HHHHHHhhcCCcEEEEeCCHHHHHHHHhCCe-eEehHHH
Confidence            2222234566889999999999999999998 4444433

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=99.40  E-value=1.4e-12  Score=96.73  Aligned_cols=113  Identities=23%  Similarity=0.267  Sum_probs=90.5

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccC
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS   99 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~   99 (149)
                      ..++.+++|+|+||+..     .+   ....|.+++.++.+++.|+++.|+||+.... +....+.+|++..+.   -.|
T Consensus        26 ~Gikgvi~DlDNTLv~w-----d~---~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R-V~~~~~~l~v~fi~~---A~K   93 (175)
T COG2179          26 HGIKGVILDLDNTLVPW-----DN---PDATPELRAWLAELKEAGIKVVVVSNNKESR-VARAAEKLGVPFIYR---AKK   93 (175)
T ss_pred             cCCcEEEEeccCceecc-----cC---CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH-HHhhhhhcCCceeec---ccC
Confidence            45899999999999984     22   2577999999999999999999999999888 788999999864332   347


Q ss_pred             CChhHHHHHH--hhCCCcceEEEeeh-HhHHHHHHHhCCchhhhhhhh
Q 032013          100 CCIMCIIFFL--FFFSISAFILFVDL-FCFMYAAAYVGCDLYVYKRLI  144 (149)
Q Consensus       100 p~p~~~i~~~--~~~~~~~~l~~eDs-~~gi~aa~~ag~~~~~~~~~~  144 (149)
                      |.+-++--+.  .++++++|+++=|. ...|.+|+++||++|.++-++
T Consensus        94 P~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~  141 (175)
T COG2179          94 PFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLV  141 (175)
T ss_pred             ccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEec
Confidence            7774433222  56888999888876 579999999999999887654

>TIGR01684 viral_ppase viral phosphatase

Probab=99.37  E-value=1.8e-12  Score=104.20  Aligned_cols=66  Identities=27%  Similarity=0.342  Sum_probs=58.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      +++|+||+||||++.       .+.+.+. ||+.++|++|+++|++++|+||+.+.. +...++.+|+..+|+.+
T Consensus       126 ~kvIvFDLDgTLi~~-------~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~-v~~~L~~lGLd~YFdvI  192 (301)
T TIGR01684       126 PHVVVFDLDSTLITD-------EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH-VVESMRKVKLDRYFDII  192 (301)
T ss_pred             ceEEEEecCCCCcCC-------CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH-HHHHHHHcCCCcccCEE
Confidence            789999999999983       2224455 999999999999999999999999999 79999999999999765

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.34  E-value=4.4e-12  Score=99.18  Aligned_cols=101  Identities=19%  Similarity=0.110  Sum_probs=76.7

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHH--HHHHHcCCCC-Ccccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK--TFLHKLGIHS-MFVPMVR   97 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~--~~l~~~gl~~-~f~~~~~   97 (149)
                      .+++++||+||||+++          ..++||+.++|++|+++|++++++||+++.. ..  ..++++|+.. +|+.+..
T Consensus         7 ~~~~~~~D~dG~l~~~----------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~-~~~~~~L~~~gl~~~~~~~Ii~   75 (242)
T TIGR01459         7 DYDVFLLDLWGVIIDG----------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNI-FSLHKTLKSLGINADLPEMIIS   75 (242)
T ss_pred             cCCEEEEecccccccC----------CccCccHHHHHHHHHHCCCEEEEEeCCCCCh-HHHHHHHHHCCCCccccceEEc
Confidence            3789999999999973          2579999999999999999999999998876 45  7889999987 7765432


Q ss_pred             cCCChhHHHHHH-----hhCCCcceEEEeehHhHHHHHHHhC
Q 032013           98 LSCCIMCIIFFL-----FFFSISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus        98 ~~p~p~~~i~~~-----~~~~~~~~l~~eDs~~gi~aa~~ag  134 (149)
                        +.....-++.     .+..+++|+++.|+..++.+....|
T Consensus        76 --s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~  115 (242)
T TIGR01459        76 --SGEIAVQMILESKKRFDIRNGIIYLLGHLENDIINLMQCY  115 (242)
T ss_pred             --cHHHHHHHHHhhhhhccCCCceEEEeCCcccchhhhcCCC
Confidence              2221112222     2355688999999998888765444

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.32  E-value=3.8e-12  Score=99.72  Aligned_cols=93  Identities=18%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCc
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSIS  115 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~  115 (149)
                      .....+++.+++++||+.|..++++||-....  +..+..+++..|||.+.      .-||+|  .||..    .+++|+
T Consensus       111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~--~~~l~~~~l~~~fD~vv~S~e~g~~KPDp--~If~~al~~l~v~Pe  186 (237)
T KOG3085|consen  111 AWKYLDGMQELLQKLRKKGTILGIISNFDDRL--RLLLLPLGLSAYFDFVVESCEVGLEKPDP--RIFQLALERLGVKPE  186 (237)
T ss_pred             CceeccHHHHHHHHHHhCCeEEEEecCCcHHH--HHHhhccCHHHhhhhhhhhhhhccCCCCh--HHHHHHHHHhCCChH
Confidence            45677888999999999999999999998664  78899999999999762      336776  77776    678999


Q ss_pred             ceEEEeehH-hHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      +|+.+-|+. |.+++|+++||+++++-.
T Consensus       187 e~vhIgD~l~nD~~gA~~~G~~ailv~~  214 (237)
T KOG3085|consen  187 ECVHIGDLLENDYEGARNLGWHAILVDN  214 (237)
T ss_pred             HeEEecCccccccHhHHHcCCEEEEEcc
Confidence            999999765 669999999999998654

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=99.31  E-value=2.6e-12  Score=97.00  Aligned_cols=92  Identities=17%  Similarity=0.105  Sum_probs=71.6

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc-----c-ccCC---------ChhHHHHH----
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM-----V-RLSC---------CIMCIIFF----  108 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~-----~-~~~p---------~p~~~i~~----  108 (149)
                      .++|++.+++++++++|++++|+|+++... ++.+++.+|+..+|...     + .+.+         .+......    
T Consensus        87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~-v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~  165 (202)
T TIGR01490        87 ILYPEARDLIRWHKAEGHTIVLVSASLTIL-VKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA  165 (202)
T ss_pred             hccHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence            578999999999999999999999999888 79999999998877541     1 1111         11122221    


Q ss_pred             HhhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          109 LFFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       109 ~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ..++++++|+++.||++++.++..||..++|.
T Consensus       166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~  197 (202)
T TIGR01490       166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN  197 (202)
T ss_pred             HcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence            24567789999999999999999999888765

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=99.30  E-value=7.2e-12  Score=96.57  Aligned_cols=93  Identities=18%  Similarity=0.086  Sum_probs=77.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------------ccCCChhHHHHHH--hhC
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------------RLSCCIMCIIFFL--FFF  112 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------------~~~p~p~~~i~~~--~~~  112 (149)
                      .++-+-.+++|-.|+.++  ..+.||+.+.. +...++.+|+.+.|+.+.            +-||+|.++-...  .++
T Consensus        99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~H-A~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi  175 (244)
T KOG3109|consen   99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVH-AIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI  175 (244)
T ss_pred             cCCCHHHHHHHHhCcccc--EEEecCCcHHH-HHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence            556667789999998886  77899999999 899999999999998762            2378887766655  556


Q ss_pred             C-CcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          113 S-ISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       113 ~-~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      + |.++++|+||..-|++|++.|+++++.-|
T Consensus       176 ~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~  206 (244)
T KOG3109|consen  176 DSPRNTYFFDDSERNIQTAKEVGLKTVLVGR  206 (244)
T ss_pred             CCcCceEEEcCchhhHHHHHhccceeEEEEe
Confidence            5 89999999999999999999999987644

>PTZ00445 p36-lilke protein; Provisional

Probab=99.30  E-value=9.4e-12  Score=95.79  Aligned_cols=123  Identities=14%  Similarity=0.007  Sum_probs=86.3

Q ss_pred             CCCccEEEEecCCccccc-cccc-ccc----CCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--------------H
Q 032013           19 ENLPRLVVFDLDYTLWPF-YCEC-CYE----DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------I   78 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~-~~~~-~~~----~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--------------i   78 (149)
                      ...+|+|++|+|.||+.- ..-| .+.    .-...+.|...++++.|++.|++++|||=++...              +
T Consensus        40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~l  119 (219)
T PTZ00445         40 ECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRM  119 (219)
T ss_pred             HcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHH
Confidence            456999999999999981 1111 111    0011367889999999999999999999655422              4


Q ss_pred             HHHHHHHcCCCC-----------Ccccc------cccCCChhHHHH--HH----hhCCCcceEEEeehHhHHHHHHHhCC
Q 032013           79 AKTFLHKLGIHS-----------MFVPM------VRLSCCIMCIIF--FL----FFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus        79 ~~~~l~~~gl~~-----------~f~~~------~~~~p~p~~~i~--~~----~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      ++..++..+-..           +++..      ...||.|..-.|  ..    .++.|++||+|+|.+.-+.+|.+.|+
T Consensus       120 i~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi  199 (219)
T PTZ00445        120 VEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGY  199 (219)
T ss_pred             HHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCC
Confidence            677887554321           12222      234777744115  22    66888999999999999999999999


Q ss_pred             chhhhh
Q 032013          136 DLYVYK  141 (149)
Q Consensus       136 ~~~~~~  141 (149)
                      +++.++
T Consensus       200 ~ai~f~  205 (219)
T PTZ00445        200 IALHVT  205 (219)
T ss_pred             EEEEcC
Confidence            999876

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=99.26  E-value=4e-11  Score=94.44  Aligned_cols=55  Identities=18%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC---CchHHHHHHHHHcCC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---PAPDIAKTFLHKLGI   88 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---~~~~i~~~~l~~~gl   88 (149)
                      ++++||+||||+++      .    .+.|++.++|++|+++|++++++||+   +... +...++.+|+
T Consensus         2 ~~~~~D~DGtl~~~------~----~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~-~~~~l~~~g~   59 (249)
T TIGR01457         2 KGYLIDLDGTMYKG------K----ERIPEAETFVHELQKRDIPYLFVTNNSTRTPES-VAEMLASFDI   59 (249)
T ss_pred             CEEEEeCCCceEcC------C----eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCC
Confidence            67999999999983      1    36689999999999999999999983   3343 3444444443

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.25  E-value=4.1e-11  Score=103.46  Aligned_cols=113  Identities=13%  Similarity=0.073  Sum_probs=85.2

Q ss_pred             CccEEEEecCCccccccc--cccccCCCC-ccCccHHHHHHHHHHCCceEEEEeCCCc------------hHHHHHHHHH
Q 032013           21 LPRLVVFDLDYTLWPFYC--ECCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPA------------PDIAKTFLHK   85 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~--~~~~~~~~~-~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~------------~~i~~~~l~~   85 (149)
                      ..|+++||+||||+....  .+..+.+.. .++||+.+.|++|+++|++++|+||.+.            .. +..+++.
T Consensus       167 ~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~k-i~~iL~~  245 (526)
T TIGR01663       167 QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAK-IEAIVAK  245 (526)
T ss_pred             cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHH-HHHHHHH
Confidence            358999999999997310  011111112 3689999999999999999999999876            34 5788899


Q ss_pred             cCCCCCcccc------cccCCChhHHHHHHhh------CCCcceEEEeehHhHHHHHHHhCCc
Q 032013           86 LGIHSMFVPM------VRLSCCIMCIIFFLFF------FSISAFILFVDLFCFMYAAAYVGCD  136 (149)
Q Consensus        86 ~gl~~~f~~~------~~~~p~p~~~i~~~~~------~~~~~~l~~eDs~~gi~aa~~ag~~  136 (149)
                      +|+.  |+..      ...||+|....++...      +++++|+.+.|+...+++|++||..
T Consensus       246 lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~~  306 (526)
T TIGR01663       246 LGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGKK  306 (526)
T ss_pred             cCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhcCCC
Confidence            9875  5543      2348888777776643      5668999999999999999999863

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=99.24  E-value=3.2e-11  Score=92.62  Aligned_cols=90  Identities=12%  Similarity=0.026  Sum_probs=68.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------c----ccCCChhHHHHHHhhCC
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------V----RLSCCIMCIIFFLFFFS  113 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~----~~~p~p~~~i~~~~~~~  113 (149)
                      ++++||+.++|+++++++ +++|+||+.... +..+++.+|+..+|...         .    ..++++...+-.....+
T Consensus        67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~-~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~  144 (203)
T TIGR02137        67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEF-SQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY  144 (203)
T ss_pred             CCCCccHHHHHHHHHhCC-eEEEEeCChHHH-HHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhC
Confidence            578999999999999985 999999999888 79999999998877521         1    12333322222212222


Q ss_pred             CcceEEEeehHhHHHHHHHhCCchhh
Q 032013          114 ISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       114 ~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                       .+|+++.||.|++.++.+||..+.+
T Consensus       145 -~~~v~vGDs~nDl~ml~~Ag~~ia~  169 (203)
T TIGR02137       145 -YRVIAAGDSYNDTTMLSEAHAGILF  169 (203)
T ss_pred             -CCEEEEeCCHHHHHHHHhCCCCEEe
Confidence             4899999999999999999987654

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=99.23  E-value=2.6e-11  Score=89.37  Aligned_cols=88  Identities=18%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc--------cc----CCCh----hHHHHH
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV--------RL----SCCI----MCIIFF  108 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~--------~~----~p~p----~~~i~~  108 (149)
                      +..++.||+.+++++++++|++++|+|++.... ++..++.+|+..+|....        ..    ++.|    .+.+..
T Consensus        70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~  148 (177)
T TIGR01488        70 RQVALRPGARELISWLKERGIDTVIVSGGFDFF-VEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK  148 (177)
T ss_pred             hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence            345678999999999999999999999999888 799999999987654321        00    0121    112222


Q ss_pred             H----hhCCCcceEEEeehHhHHHHHHHh
Q 032013          109 L----FFFSISAFILFVDLFCFMYAAAYV  133 (149)
Q Consensus       109 ~----~~~~~~~~l~~eDs~~gi~aa~~a  133 (149)
                      .    .++++++++.+-||.+++.+++.|
T Consensus       149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a  177 (177)
T TIGR01488       149 ELLEESKITLKKIIAVGDSVNDLPMLKLA  177 (177)
T ss_pred             HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence            1    346678999999999999998765

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=99.21  E-value=1.2e-10  Score=93.31  Aligned_cols=88  Identities=17%  Similarity=0.048  Sum_probs=67.4

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------------cccCCChhH-------H
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------------VRLSCCIMC-------I  105 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------------~~~~p~p~~-------~  105 (149)
                      ..+.+.||+.+++++|+++|++++|+|++.... ++..++++|+...+..+            ..++|.|+.       .
T Consensus       118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~-Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~  196 (277)
T TIGR01544       118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNV-LEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHD  196 (277)
T ss_pred             cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHH
Confidence            358899999999999999999999999999988 79999999985433222            123566633       4


Q ss_pred             HHH--H--hh--CCCcceEEEeehHhHHHHHHHh
Q 032013          106 IFF--L--FF--FSISAFILFVDLFCFMYAAAYV  133 (149)
Q Consensus       106 i~~--~--~~--~~~~~~l~~eDs~~gi~aa~~a  133 (149)
                      ++.  +  .+  .++++|++++||.+|+.+|.-.
T Consensus       197 v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~  230 (277)
T TIGR01544       197 VALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV  230 (277)
T ss_pred             HHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence            443  2  22  5678999999999999996433

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=99.21  E-value=1e-10  Score=80.47  Aligned_cols=81  Identities=22%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHcCCCCCcccccccCCCh
Q 032013           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLSCCI  102 (149)
Q Consensus        25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~f~~~~~~~p~p  102 (149)
                      ++||+||||+++          ..+.||+.++|++|+++|+++.++||++...  .....|+.+|+.  ++..++..|..
T Consensus         1 ~l~D~dGvl~~g----------~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~--~~~~~i~ts~~   68 (101)
T PF13344_consen    1 FLFDLDGVLYNG----------NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP--VDEDEIITSGM   68 (101)
T ss_dssp             EEEESTTTSEET----------TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHH
T ss_pred             CEEeCccEeEeC----------CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC--CCcCEEEChHH
Confidence            689999999974          2589999999999999999999999987433  145667888886  56667888888


Q ss_pred             hHHHHHHhhCCCcce
Q 032013          103 MCIIFFLFFFSISAF  117 (149)
Q Consensus       103 ~~~i~~~~~~~~~~~  117 (149)
                      ...-|++...+...+
T Consensus        69 ~~~~~l~~~~~~~~v   83 (101)
T PF13344_consen   69 AAAEYLKEHKGGKKV   83 (101)
T ss_dssp             HHHHHHHHHTTSSEE
T ss_pred             HHHHHHHhcCCCCEE
Confidence            778888875343444

...

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=99.21  E-value=4.1e-11  Score=96.54  Aligned_cols=68  Identities=28%  Similarity=0.372  Sum_probs=58.5

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      ..+++++||+||||++      ++ +.+.+. |++.++|++|+++|++++|+||++++. +...++.+|+..+|+.+
T Consensus       126 ~~~~~i~~D~D~TL~~------~~-~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~-v~~~Le~lgL~~yFDvI  194 (303)
T PHA03398        126 EIPHVIVFDLDSTLIT------DE-EPVRIRDPFVYDSLDELKERGCVLVLWSYGNREH-VVHSLKETKLEGYFDII  194 (303)
T ss_pred             eeccEEEEecCCCccC------CC-CccccCChhHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHcCCCccccEE
Confidence            3478999999999998      32 224444 999999999999999999999999998 79999999999998754

>PLN02645 phosphoglycolate phosphatase

Probab=99.20  E-value=1.6e-10  Score=93.84  Aligned_cols=106  Identities=12%  Similarity=0.167  Sum_probs=76.7

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCccccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~   98 (149)
                      .+++++||+||||+++      .    .++||+.++|++|+++|++++++||++....  ....++.+|+..  ...++.
T Consensus        27 ~~~~~~~D~DGtl~~~------~----~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~--~~~~I~   94 (311)
T PLN02645         27 SVETFIFDCDGVIWKG------D----KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNV--TEEEIF   94 (311)
T ss_pred             hCCEEEEeCcCCeEeC------C----ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhhEe
Confidence            3789999999999973      1    4779999999999999999999999985431  234557788753  334566


Q ss_pred             CCChhHHHHHHh-hCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013           99 SCCIMCIIFFLF-FFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus        99 ~p~p~~~i~~~~-~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                      .+......|++. .....+.+.+=++..-..++..+|++++
T Consensus        95 ts~~~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~  135 (311)
T PLN02645         95 SSSFAAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQYL  135 (311)
T ss_pred             ehHHHHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEEe
Confidence            666555666663 3332334555577777888889998754

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=99.19  E-value=5.1e-11  Score=94.27  Aligned_cols=65  Identities=23%  Similarity=0.337  Sum_probs=56.3

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      ++|++++|+||||++      +++   .+.+.+.++|++|+++|++++++|||+... +...++.+++..++.+.
T Consensus         1 m~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I~~   65 (272)
T PRK15126          1 MARLAAFDMDGTLLM------PDH---HLGEKTLSTLARLRERDITLTFATGRHVLE-MQHILGALSLDAYLITG   65 (272)
T ss_pred             CccEEEEeCCCcCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCCCcEEec
Confidence            378999999999998      332   478899999999999999999999999999 79999999998765544

>PRK10976 putative hydrolase; Provisional

Probab=99.19  E-value=5.1e-11  Score=93.76  Aligned_cols=64  Identities=31%  Similarity=0.365  Sum_probs=55.5

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      +|++++|+||||++      +++   .+.|.+.++|++++++|++++++|||+... +...++.+++..++.+.
T Consensus         2 ikli~~DlDGTLl~------~~~---~is~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I~~   65 (266)
T PRK10976          2 YQVVASDLDGTLLS------PDH---TLSPYAKETLKLLTARGIHFVFATGRHHVD-VGQIRDNLEIKSYMITS   65 (266)
T ss_pred             ceEEEEeCCCCCcC------CCC---cCCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCeEEEc
Confidence            68999999999998      332   477889999999999999999999999998 68899999988765544

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=99.18  E-value=5.9e-11  Score=91.25  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=54.7

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      +|++++|+||||++      +++   .+.|.+.++|++|+++|++++++|||+... +...++.+++..++...
T Consensus         3 ~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~i~~   66 (230)
T PRK01158          3 IKAIAIDIDGTITD------KDR---RLSLKAVEAIRKAEKLGIPVILATGNVLCF-ARAAAKLIGTSGPVIAE   66 (230)
T ss_pred             eeEEEEecCCCcCC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCcEEEe
Confidence            68999999999998      232   477899999999999999999999999998 68888999987665433

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=99.18  E-value=7.1e-11  Score=92.83  Aligned_cols=64  Identities=20%  Similarity=0.297  Sum_probs=55.0

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      +|++++|+||||++      +++   .+.|...++|++++++|++++++|||+... +...++.+++..++.+.
T Consensus         3 ~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I~~   66 (272)
T PRK10530          3 YRVIALDLDGTLLT------PKK---TILPESLEALARAREAGYKVIIVTGRHHVA-IHPFYQALALDTPAICC   66 (272)
T ss_pred             ccEEEEeCCCceEC------CCC---ccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCCEEEc
Confidence            78999999999998      232   477889999999999999999999999998 68999999987655443

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.16  E-value=8.7e-11  Score=93.31  Aligned_cols=66  Identities=36%  Similarity=0.473  Sum_probs=57.1

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      ++|++++|+||||++.      +.   .+.+++.++|++|+++|++++++||++... +...++.+++..++...+
T Consensus         3 ~~kli~~DlDGTLl~~------~~---~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~-~~~~~~~l~l~~~~i~~n   68 (273)
T PRK00192          3 MKLLVFTDLDGTLLDH------HT---YSYEPAKPALKALKEKGIPVIPCTSKTAAE-VEVLRKELGLEDPFIVEN   68 (273)
T ss_pred             cceEEEEcCcccCcCC------CC---cCcHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCCCEEEEc
Confidence            5899999999999982      22   366889999999999999999999999998 799999999987776654

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=99.15  E-value=1.1e-10  Score=89.43  Aligned_cols=64  Identities=23%  Similarity=0.287  Sum_probs=54.9

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      +|+|++|+||||++      +++   .+.|.+.+.|++|+++|++++++|||+... +..+++.+++..++...
T Consensus         1 ik~v~~DlDGTLl~------~~~---~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~-~~~~~~~l~~~~~~i~~   64 (215)
T TIGR01487         1 IKLVAIDIDGTLTE------PNR---MISERAIEAIRKAEKKGIPVSLVTGNTVPF-ARALAVLIGTSGPVVAE   64 (215)
T ss_pred             CcEEEEecCCCcCC------CCc---ccCHHHHHHHHHHHHCCCEEEEEcCCcchh-HHHHHHHhCCCCcEEEc
Confidence            47899999999997      232   477899999999999999999999999999 68999999987665543

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=99.13  E-value=6.5e-11  Score=87.82  Aligned_cols=114  Identities=14%  Similarity=0.032  Sum_probs=85.1

Q ss_pred             cEEEEecCCccccccccccc---------------cCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013           23 RLVVFDLDYTLWPFYCECCY---------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~---------------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      +++++|+|+||+.....-..               ..-.+...||+.++|++|.+. +.++|.|+++... ++.+++.++
T Consensus         2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y-A~~il~~ld   79 (162)
T TIGR02251         2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY-ADPVLDILD   79 (162)
T ss_pred             cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH-HHHHHHHHC
Confidence            46999999999975211100               011246889999999999988 9999999999998 899999999


Q ss_pred             CCC-Cccccc----ccCCChhHHHHHH----hhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013           88 IHS-MFVPMV----RLSCCIMCIIFFL----FFFSISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        88 l~~-~f~~~~----~~~p~p~~~i~~~----~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      ... +|+..-    .....|.   |.+    .+.+++++++++|++..+.++.++|+++.-|.
T Consensus        80 p~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~  139 (162)
T TIGR02251        80 RGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWF  139 (162)
T ss_pred             cCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCC
Confidence            765 665442    2222231   333    45667899999999999999999999877654

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=99.12  E-value=1.8e-10  Score=90.62  Aligned_cols=66  Identities=33%  Similarity=0.583  Sum_probs=58.1

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      +++++++|+||||++      ++.   .+.+.+.++|++++++|++++++|||+... +..+++.+++..++.+.+
T Consensus         2 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~~~~~g~~v~iaTGR~~~~-~~~~~~~l~~~~~~I~~N   67 (264)
T COG0561           2 MIKLLAFDLDGTLLD------SNK---TISPETKEALARLREKGVKVVLATGRPLPD-VLSILEELGLDGPLITFN   67 (264)
T ss_pred             CeeEEEEcCCCCccC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCccEEEeC
Confidence            478999999999998      332   388999999999999999999999999998 799999999998666654

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=99.11  E-value=5.8e-10  Score=84.28  Aligned_cols=122  Identities=14%  Similarity=0.004  Sum_probs=86.0

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC---------------chHHHHHHHHHc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLHKL   86 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~---------------~~~i~~~~l~~~   86 (149)
                      .+++++|.||||..-...+-...+...+.||+.+++..|++.|++++++||.+               ... ....|+..
T Consensus         5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~-m~~~l~~~   83 (181)
T COG0241           5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNK-MLKILASQ   83 (181)
T ss_pred             CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHH-HHHHHHHc
Confidence            67899999999998433122233446789999999999999999999999954               122 34556666


Q ss_pred             CC--CCCcccc-------cccCCChhHHHHHHh--hCCCcceEEEeehHhHHHHHHHhCCchhhhhhhh
Q 032013           87 GI--HSMFVPM-------VRLSCCIMCIIFFLF--FFSISAFILFVDLFCFMYAAAYVGCDLYVYKRLI  144 (149)
Q Consensus        87 gl--~~~f~~~-------~~~~p~p~~~i~~~~--~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~~~  144 (149)
                      |.  +..+-+.       ...||+|.=......  .+.++...++=|+...|++|.+||++-+.|.+-+
T Consensus        84 gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~  152 (181)
T COG0241          84 GVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGI  152 (181)
T ss_pred             CCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCc
Confidence            63  3322221       244777733333333  3666888999999999999999999988776643

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.10  E-value=2.4e-10  Score=92.14  Aligned_cols=65  Identities=25%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      +|+|++||||||+|+      +.   ...+.+.++|++|+++|++++++||++..+ +..+.+.+++..+|...+
T Consensus         1 ~KLIftDLDGTLLd~------~~---~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~e-v~~l~~~Lgl~~p~I~eN   65 (302)
T PRK12702          1 MRLVLSSLDGSLLDL------EF---NSYGAARQALAALERRSIPLVLYSLRTRAQ-LEHLCRQLRLEHPFICED   65 (302)
T ss_pred             CcEEEEeCCCCCcCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCCeEEEeC
Confidence            478999999999984      21   356779999999999999999999999999 699999999988777664

>PRK08238 hypothetical protein; Validated

Probab=99.10  E-value=5.5e-10  Score=95.68  Aligned_cols=113  Identities=17%  Similarity=0.050  Sum_probs=82.2

Q ss_pred             cEEEEecCCcccccccccc------------------------------------ccCCCCccCccHHHHHHHHHHCCce
Q 032013           23 RLVVFDLDYTLWPFYCECC------------------------------------YEDEIPYLYPHAKGILEALKEKGIH   66 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~------------------------------------~~~~~~~~~pg~~e~L~~Lk~~Gi~   66 (149)
                      .-+++|+||||++++.-+.                                    -+....+..|++.+.+++++++|++
T Consensus        11 ~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G~~   90 (479)
T PRK08238         11 LPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAGRK   90 (479)
T ss_pred             CCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCCCE
Confidence            3489999999998644311                                    1223346789999999999999999


Q ss_pred             EEEEeCCCchHHHHHHHHHcCC-CCCcccc--cccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCch
Q 032013           67 VAVASRSPAPDIAKTFLHKLGI-HSMFVPM--VRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDL  137 (149)
Q Consensus        67 i~IaT~~~~~~i~~~~l~~~gl-~~~f~~~--~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~  137 (149)
                      ++++||+++.. ++.+++++|+ +..+...  ...+|+|.+.... ..++.++|..+.||.+++.+++.||=.+
T Consensus        91 v~LaTas~~~~-a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~-~~l~~~~~~yvGDS~~Dlp~~~~A~~av  162 (479)
T PRK08238         91 LVLATASDERL-AQAVAAHLGLFDGVFASDGTTNLKGAAKAAALV-EAFGERGFDYAGNSAADLPVWAAARRAI  162 (479)
T ss_pred             EEEEeCCCHHH-HHHHHHHcCCCCEEEeCCCccccCCchHHHHHH-HHhCccCeeEecCCHHHHHHHHhCCCeE
Confidence            99999999988 7999999997 2222111  2345555444333 3345566888899999999999999433

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=99.09  E-value=2.6e-10  Score=89.80  Aligned_cols=58  Identities=24%  Similarity=0.444  Sum_probs=51.8

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      +|++++|+||||++      +++   .+.+.+.++|++|+++|++++++|||+... +...++.+++.
T Consensus         3 ~kli~~DlDGTLl~------~~~---~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~   60 (270)
T PRK10513          3 IKLIAIDMDGTLLL------PDH---TISPAVKQAIAAARAKGVNVVLTTGRPYAG-VHRYLKELHME   60 (270)
T ss_pred             eEEEEEecCCcCcC------CCC---ccCHHHHHHHHHHHHCCCEEEEecCCChHH-HHHHHHHhCCC
Confidence            78999999999998      332   477899999999999999999999999999 68999999875

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.07  E-value=3.5e-10  Score=89.73  Aligned_cols=66  Identities=26%  Similarity=0.313  Sum_probs=54.9

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC-CCccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMV   96 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~-~~f~~~~   96 (149)
                      -+++|++|+||||++      ++.   .+.+.+.++|++|+++|++++++|||+... +..+++.+++. .++.+.+
T Consensus         6 ~~~lI~~DlDGTLL~------~~~---~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~~~~l~~~~~~~I~~N   72 (271)
T PRK03669          6 DPLLIFTDLDGTLLD------SHT---YDWQPAAPWLTRLREAQVPVILCSSKTAAE-MLPLQQTLGLQGLPLIAEN   72 (271)
T ss_pred             CCeEEEEeCccCCcC------CCC---cCcHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHhCCCCCcEEEeC
Confidence            378999999999997      322   356788999999999999999999999999 79999999985 3555443

>COG4996 Predicted phosphatase [General function prediction only]

Probab=99.05  E-value=9.7e-10  Score=78.92  Aligned_cols=101  Identities=21%  Similarity=0.192  Sum_probs=78.4

Q ss_pred             cEEEEecCCcccccccc---------------ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013           23 RLVVFDLDYTLWPFYCE---------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        23 k~vifDlDGTLld~~~~---------------~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      ++++||.|||+||++..               .++.+..+.++|.+.+++++++..|+-+..+|-+...- +.+.|+.++
T Consensus         1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k-A~~aLral~   79 (164)
T COG4996           1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK-AIKALRALD   79 (164)
T ss_pred             CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH-HHHHHHHhc
Confidence            46899999999998554               12556678999999999999999999999999888777 789999999


Q ss_pred             CCCCcccccccCCChhHHHHH---------Hhh--CCCcceEEEeehHh
Q 032013           88 IHSMFVPMVRLSCCIMCIIFF---------LFF--FSISAFILFVDLFC  125 (149)
Q Consensus        88 l~~~f~~~~~~~p~p~~~i~~---------~~~--~~~~~~l~~eDs~~  125 (149)
                      +.+||.. ...+|+|--+.-+         +.+  +.|++-+.|+|-.-
T Consensus        80 ~~~yFhy-~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~i  127 (164)
T COG4996          80 LLQYFHY-IVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRI  127 (164)
T ss_pred             hhhhEEE-EEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccc
Confidence            9999975 4568888433222         122  55667777777543

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=99.03  E-value=4.4e-10  Score=82.72  Aligned_cols=114  Identities=15%  Similarity=0.115  Sum_probs=87.5

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHH--HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK--GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR   97 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~--e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~   97 (149)
                      +++|++++|+||||+|+..++..+++..+.+ +++  -.++.|.+.|++++|+|++.... ++...+.+|+..+|.... 
T Consensus         6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaF-nv~DG~Gik~l~~~Gi~vAIITGr~s~i-ve~Ra~~LGI~~~~qG~~-   82 (170)
T COG1778           6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAF-NVRDGHGIKLLLKSGIKVAIITGRDSPI-VEKRAKDLGIKHLYQGIS-   82 (170)
T ss_pred             hhceEEEEeccceeecCeEEEcCCCceeeee-eccCcHHHHHHHHcCCeEEEEeCCCCHH-HHHHHHHcCCceeeechH-
Confidence            4589999999999999988877777766665 444  45899999999999999999998 799999999988776532 


Q ss_pred             cCCChhH--HHHHHhhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013           98 LSCCIMC--IIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus        98 ~~p~p~~--~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                        -+-.+  .+-.+.++.+++|..+=|-.+.+-.-.+.|..+-
T Consensus        83 --dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a  123 (170)
T COG1778          83 --DKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVA  123 (170)
T ss_pred             --hHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCccc
Confidence              22222  2333366777888888888888887777775543

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=99.03  E-value=6.5e-10  Score=85.26  Aligned_cols=63  Identities=27%  Similarity=0.354  Sum_probs=51.7

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC-CCccccc
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMV   96 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~-~~f~~~~   96 (149)
                      +|++||||||++.      +.   ...+.+.++|++|+++|++++++|||+... +...++.+++. .++.+.+
T Consensus         1 ~i~~DlDGTLL~~------~~---~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~-~~~~~~~l~~~~~~~I~~N   64 (221)
T TIGR02463         1 WVFSDLDGTLLDS------HS---YDWQPAAPWLTRLQEAGIPVILCTSKTAAE-VEYLQKALGLTGDPYIAEN   64 (221)
T ss_pred             CEEEeCCCCCcCC------CC---CCcHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCCcEEEeC
Confidence            3899999999983      22   244558999999999999999999999999 79999999987 5555543

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=99.02  E-value=8.1e-10  Score=86.59  Aligned_cols=62  Identities=35%  Similarity=0.582  Sum_probs=52.6

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      ++++|+||||++      .++   .+.+.+.++|++|+++|++++++|||+... +...++.+++..++.+.
T Consensus         1 li~~DlDGTLl~------~~~---~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~~~I~~   62 (256)
T TIGR00099         1 LIFIDLDGTLLN------DDH---TISPSTKEALAKLREKGIKVVLATGRPYKE-VKNILKELGLDTPFITA   62 (256)
T ss_pred             CEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCCCCEEEc
Confidence            489999999998      222   477899999999999999999999999998 68999999987555444

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=99.01  E-value=7.3e-10  Score=84.62  Aligned_cols=63  Identities=30%  Similarity=0.438  Sum_probs=54.4

Q ss_pred             EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR   97 (149)
Q Consensus        25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~   97 (149)
                      |++|+||||++      +++   .+.|...++|++|+++|++++++|||+... +..+++.+++..++...+|
T Consensus         1 i~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~~~~~~I~~nG   63 (254)
T PF08282_consen    1 IFSDLDGTLLN------SDG---KISPETIEALKELQEKGIKLVIATGRSYSS-IKRLLKELGIDDYFICSNG   63 (254)
T ss_dssp             EEEECCTTTCS------TTS---SSCHHHHHHHHHHHHTTCEEEEECSSTHHH-HHHHHHHTTHCSEEEEGGG
T ss_pred             cEEEECCceec------CCC---eeCHHHHHHHHhhcccceEEEEEccCcccc-cccccccccchhhhccccc
Confidence            68999999998      332   477999999999999999999999999999 7999999998867666543

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=99.01  E-value=8.3e-10  Score=85.84  Aligned_cols=62  Identities=27%  Similarity=0.396  Sum_probs=52.0

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      +++||+||||++.      .    ...+++.++|++|+++|++++++|||++.. +..+++++|+..++...+
T Consensus         1 li~~DlDGTLl~~------~----~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~-~~~~~~~lg~~~~~I~~N   62 (225)
T TIGR02461         1 VIFTDLDGTLLPP------G----YEPGPAREALEELKDLGFPIVFVSSKTRAE-QEYYREELGVEPPFIVEN   62 (225)
T ss_pred             CEEEeCCCCCcCC------C----CCchHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCCcEEEcC
Confidence            4899999999972      1    245689999999999999999999999998 689999999876665443

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=98.98  E-value=9.9e-10  Score=84.07  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=50.5

Q ss_pred             EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc
Q 032013           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (149)
Q Consensus        25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~   94 (149)
                      ++||+||||++.      ++   .+.+.+.++|++++++|++++++|||+... +..+++.+++..++..
T Consensus         1 i~~DlDGTLl~~------~~---~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~-~~~~~~~l~~~~~~i~   60 (225)
T TIGR01482         1 IASDIDGTLTDP------NR---AINESALEAIRKAESVGIPVVLVTGNSVQF-ARALAKLIGTPDPVIA   60 (225)
T ss_pred             CeEeccCccCCC------Cc---ccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCeEEE
Confidence            589999999983      22   477888999999999999999999999998 6888999987655543

catalyze the same reaction as SPP.

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=98.98  E-value=9.8e-10  Score=84.97  Aligned_cols=92  Identities=17%  Similarity=0.087  Sum_probs=71.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----cc-c----------CCChhH---HHHH
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----VR-L----------SCCIMC---IIFF  108 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----~~-~----------~p~p~~---~i~~  108 (149)
                      .++.||+.+++++++++|++++|+|++.... ++.+.+.+|++..+...    .+ +          ......   .+.-
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~l-v~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~  154 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFL-VEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA  154 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHH-HHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence            6899999999999999999999999999887 89999999998765433    11 1          111111   2222


Q ss_pred             HhhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          109 LFFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       109 ~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +.+.+++++..+-||.|.+--=..||-.+.+
T Consensus       155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~  185 (212)
T COG0560         155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAV  185 (212)
T ss_pred             HcCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence            3567788999999999999998888876654

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=98.96  E-value=7.8e-09  Score=82.52  Aligned_cols=102  Identities=16%  Similarity=0.136  Sum_probs=68.7

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCcccccccC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRLS   99 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~~   99 (149)
                      +++++||+||||+++          ..++||+.++|++|+++|++++++||++....  ....++.+|+.  ....++..
T Consensus         2 ~~~~~~D~DGtl~~~----------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~--~~~~~i~t   69 (279)
T TIGR01452         2 AQGFIFDCDGVLWLG----------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFN--GLAEQLFS   69 (279)
T ss_pred             ccEEEEeCCCceEcC----------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CChhhEec
Confidence            678999999999973          14789999999999999999999999764321  23567778875  33455666


Q ss_pred             CChhHHHHHHhh-CCCcceEEEeehHhHHH-HHHHhCCch
Q 032013          100 CCIMCIIFFLFF-FSISAFILFVDLFCFMY-AAAYVGCDL  137 (149)
Q Consensus       100 p~p~~~i~~~~~-~~~~~~l~~eDs~~gi~-aa~~ag~~~  137 (149)
                      |.-...-|++.. .......++=+.  |+. ....+|..+
T Consensus        70 s~~~~~~~l~~~~~~~~~v~~iG~~--~~~~~l~~~g~~~  107 (279)
T TIGR01452        70 SALCAARLLRQPPDAPKAVYVIGEE--GLRAELDAAGIRL  107 (279)
T ss_pred             HHHHHHHHHHhhCcCCCEEEEEcCH--HHHHHHHHCCCEE
Confidence            666556666653 233445444332  333 334457654

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=98.95  E-value=6.8e-09  Score=82.89  Aligned_cols=113  Identities=16%  Similarity=0.042  Sum_probs=78.6

Q ss_pred             CCCccEEEEecCCcccccccc---------------cc--ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--H
Q 032013           19 ENLPRLVVFDLDYTLWPFYCE---------------CC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--A   79 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~---------------~~--~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~   79 (149)
                      ...|.+|+||+|+|++++..+               |+  .......++||+.++|++|+++|++++++||++....  +
T Consensus        72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T  151 (266)
T TIGR01533        72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT  151 (266)
T ss_pred             CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence            345789999999999986543               10  1123467899999999999999999999999985431  3


Q ss_pred             HHHHHHcCCCCCccc-c---cccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHh
Q 032013           80 KTFLHKLGIHSMFVP-M---VRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYV  133 (149)
Q Consensus        80 ~~~l~~~gl~~~f~~-~---~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~a  133 (149)
                      ...++.+|+..++.. +   ...++++...-.+..+.++  .+.+=|..+++.++...
T Consensus       152 ~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~I--vl~vGD~~~Df~~~~~~  207 (266)
T TIGR01533       152 LKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEI--VLLFGDNLLDFDDFFYK  207 (266)
T ss_pred             HHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCE--EEEECCCHHHhhhhhcc
Confidence            578888999764322 2   2235566445555444443  57777999999765543

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=98.95  E-value=3.3e-09  Score=83.94  Aligned_cols=80  Identities=11%  Similarity=0.125  Sum_probs=57.7

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHcCCCCCcccccccC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLS   99 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~f~~~~~~~   99 (149)
                      +++++||+||||+++      ....-.+.|++.+++++|+++|++++++||++...  .....++.+|++  +...++..
T Consensus         1 ~k~i~~D~DGtl~~~------~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~t   72 (257)
T TIGR01458         1 VKGVLLDISGVLYIS------DAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFT   72 (257)
T ss_pred             CCEEEEeCCCeEEeC------CCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEc
Confidence            468999999999984      11001278999999999999999999999987653  146677788875  44445555


Q ss_pred             CChhHHHHHH
Q 032013          100 CCIMCIIFFL  109 (149)
Q Consensus       100 p~p~~~i~~~  109 (149)
                      |.....-|+.
T Consensus        73 s~~~~~~~l~   82 (257)
T TIGR01458        73 PAPAARQLLE   82 (257)
T ss_pred             HHHHHHHHHH
Confidence            5554445544

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>PTZ00174 phosphomannomutase; Provisional

Probab=98.93  E-value=2.2e-09  Score=84.26  Aligned_cols=54  Identities=30%  Similarity=0.381  Sum_probs=46.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~   85 (149)
                      +++|++|+||||++      +++   .+.|.+.++|++++++|++++++|||+... +...++.
T Consensus         5 ~klia~DlDGTLL~------~~~---~is~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~l~~   58 (247)
T PTZ00174          5 KTILLFDVDGTLTK------PRN---PITQEMKDTLAKLKSKGFKIGVVGGSDYPK-IKEQLGE   58 (247)
T ss_pred             CeEEEEECcCCCcC------CCC---CCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHhh
Confidence            68999999999998      332   477889999999999999999999999888 5666653

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=98.93  E-value=5.4e-09  Score=74.82  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             cEEEEecCCccccccccccccC--CCCccCccHHHHHHHHHHCCceEEEEeCCCchH--------------HHHHHHHHc
Q 032013           23 RLVVFDLDYTLWPFYCECCYED--EIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IAKTFLHKL   86 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~--~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--------------i~~~~l~~~   86 (149)
                      |++++|+||||++..     .+  ....+.+++.+.|++++++|+.++++|+|+...              .+...|++.
T Consensus         2 K~i~~DiDGTL~~~~-----~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~   76 (126)
T TIGR01689         2 KRLVMDLDNTITLTE-----NGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH   76 (126)
T ss_pred             CEEEEeCCCCcccCC-----CCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc
Confidence            689999999999731     11  113477899999999999999999999998653              246777787


Q ss_pred             CCCCCcccccccCCC
Q 032013           87 GIHSMFVPMVRLSCC  101 (149)
Q Consensus        87 gl~~~f~~~~~~~p~  101 (149)
                      +++  ++.+...||-
T Consensus        77 ~ip--Yd~l~~~kp~   89 (126)
T TIGR01689        77 NVP--YDEIYVGKPW   89 (126)
T ss_pred             CCC--CceEEeCCCc
Confidence            775  4555555553

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>PRK10444 UMP phosphatase; Provisional

Probab=98.92  E-value=8e-09  Score=81.56  Aligned_cols=77  Identities=17%  Similarity=0.193  Sum_probs=56.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCcccccccC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRLS   99 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~~   99 (149)
                      |++++||+||||+++      .    .+.|++.+++++|+++|++++++||++....  ....++.+|+.  +...++..
T Consensus         1 ~~~v~~DlDGtL~~~------~----~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~--~~~~~i~t   68 (248)
T PRK10444          1 IKNVICDIDGVLMHD------N----VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD--VPDSVFYT   68 (248)
T ss_pred             CcEEEEeCCCceEeC------C----eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC--CCHhhEec
Confidence            578999999999983      1    4789999999999999999999999987541  24445556763  34444555


Q ss_pred             CChhHHHHHHh
Q 032013          100 CCIMCIIFFLF  110 (149)
Q Consensus       100 p~p~~~i~~~~  110 (149)
                      |.-...-|++.
T Consensus        69 s~~~~~~~L~~   79 (248)
T PRK10444         69 SAMATADFLRR   79 (248)
T ss_pred             HHHHHHHHHHh
Confidence            55544555553

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=98.92  E-value=1.2e-08  Score=76.40  Aligned_cols=114  Identities=22%  Similarity=0.144  Sum_probs=82.7

Q ss_pred             CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCce--EEEEeCCC-------chHHHHHHHHHcCCC
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIH--VAVASRSP-------APDIAKTFLHKLGIH   89 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~--i~IaT~~~-------~~~i~~~~l~~~gl~   89 (149)
                      ...+++++||+|+||+..      .  ...+.|...+.++++++.+..  ++|+||+.       ..+ ++.+-+.+|+.
T Consensus        38 ~~Gik~li~DkDNTL~~~------~--~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~-a~~~~~~lgIp  108 (168)
T PF09419_consen   38 KKGIKALIFDKDNTLTPP------Y--EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER-AEALEKALGIP  108 (168)
T ss_pred             hcCceEEEEcCCCCCCCC------C--cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH-HHHHHHhhCCc
Confidence            355899999999999973      1  136889999999999998764  99999984       455 67777888865


Q ss_pred             CCcccccccCCChhHHHHHHhh-----CCCcceEEEee-hHhHHHHHHHhCCchhhhhhh
Q 032013           90 SMFVPMVRLSCCIMCIIFFLFF-----FSISAFILFVD-LFCFMYAAAYVGCDLYVYKRL  143 (149)
Q Consensus        90 ~~f~~~~~~~p~p~~~i~~~~~-----~~~~~~l~~eD-s~~gi~aa~~ag~~~~~~~~~  143 (149)
                      -+  .....||.....+.-..+     .+|++..++=| ...+|..|++.|+-+|.+++=
T Consensus       109 vl--~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g  166 (168)
T PF09419_consen  109 VL--RHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG  166 (168)
T ss_pred             EE--EeCCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence            21  112346644334433322     35778877777 467999999999999987753

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=98.89  E-value=7.9e-09  Score=77.77  Aligned_cols=84  Identities=26%  Similarity=0.256  Sum_probs=69.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--CcccccccCCChhHHHHHH----hhCCCcceEEE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFVPMVRLSCCIMCIIFFL----FFFSISAFILF  120 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--~f~~~~~~~p~p~~~i~~~----~~~~~~~~l~~  120 (149)
                      .+++|++.++|++|++.|++++++||..... +....+.+|+.+  .|.... .+|+|  .+|..    .++++++++.+
T Consensus       126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~-a~~~~~~lgi~~~~v~a~~~-~kP~~--k~~~~~i~~l~~~~~~v~~v  201 (215)
T PF00702_consen  126 DPLRPGAKEALQELKEAGIKVAILTGDNEST-ASAIAKQLGIFDSIVFARVI-GKPEP--KIFLRIIKELQVKPGEVAMV  201 (215)
T ss_dssp             EEBHTTHHHHHHHHHHTTEEEEEEESSEHHH-HHHHHHHTTSCSEEEEESHE-TTTHH--HHHHHHHHHHTCTGGGEEEE
T ss_pred             CcchhhhhhhhhhhhccCcceeeeecccccc-cccccccccccccccccccc-ccccc--hhHHHHHHHHhcCCCEEEEE
Confidence            3688999999999999999999999999888 899999999965  232212 36666  54443    55677899999


Q ss_pred             eehHhHHHHHHHhC
Q 032013          121 VDLFCFMYAAAYVG  134 (149)
Q Consensus       121 eDs~~gi~aa~~ag  134 (149)
                      .|..|++.|+++||
T Consensus       202 GDg~nD~~al~~Ag  215 (215)
T PF00702_consen  202 GDGVNDAPALKAAG  215 (215)
T ss_dssp             ESSGGHHHHHHHSS
T ss_pred             ccCHHHHHHHHhCc
Confidence            99999999999997

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=98.88  E-value=4.7e-09  Score=82.48  Aligned_cols=63  Identities=30%  Similarity=0.389  Sum_probs=52.0

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      ++++|+||||++.      +.   ...+.+.+++++|+++|++++++|||+... +..+++.+++..++.+.+
T Consensus         1 li~~DlDGTll~~------~~---~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~-~~~~~~~~~~~~~~I~~N   63 (256)
T TIGR01486         1 WIFTDLDGTLLDP------HG---YDWGPAKEVLERLQELGIPVIPCTSKTAAE-VEYLRKELGLEDPFIVEN   63 (256)
T ss_pred             CEEEcCCCCCcCC------CC---cCchHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCcEEEcC
Confidence            4899999999983      22   134568999999999999999999999999 799999999876665543

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.4e-08  Score=81.25  Aligned_cols=86  Identities=17%  Similarity=0.066  Sum_probs=56.9

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHc-CCCCCccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKL-GIHSMFVPMV   96 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~-gl~~~f~~~~   96 (149)
                      ...++++||+||||+++          ..++||+.++|++|+++|+++.++||++...-  ....|+.+ +++...  ..
T Consensus         6 ~~y~~~l~DlDGvl~~G----------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~--~~   73 (269)
T COG0647           6 DKYDGFLFDLDGVLYRG----------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTP--DD   73 (269)
T ss_pred             hhcCEEEEcCcCceEeC----------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCH--HH
Confidence            34788999999999974          25899999999999999999999999986541  23455553 332222  23


Q ss_pred             ccCCChhHHHHHHhhCCCcce
Q 032013           97 RLSCCIMCIIFFLFFFSISAF  117 (149)
Q Consensus        97 ~~~p~p~~~i~~~~~~~~~~~  117 (149)
                      +..+.-....|++...+...+
T Consensus        74 i~TS~~at~~~l~~~~~~~kv   94 (269)
T COG0647          74 IVTSGDATADYLAKQKPGKKV   94 (269)
T ss_pred             eecHHHHHHHHHHhhCCCCEE
Confidence            333333344455444333333

>PLN02887 hydrolase family protein

Probab=98.82  E-value=9.1e-09  Score=89.99  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ..++|+|++|+||||++      .++   .+.+.+.++|++++++|++++++|||+... +...++.+++.
T Consensus       305 ~~~iKLIa~DLDGTLLn------~d~---~Is~~t~eAI~kl~ekGi~~vIATGR~~~~-i~~~l~~L~l~  365 (580)
T PLN02887        305 KPKFSYIFCDMDGTLLN------SKS---QISETNAKALKEALSRGVKVVIATGKARPA-VIDILKMVDLA  365 (580)
T ss_pred             ccCccEEEEeCCCCCCC------CCC---ccCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHhCcc
Confidence            34589999999999998      332   478899999999999999999999999998 68889988864

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=98.81  E-value=2.2e-08  Score=87.09  Aligned_cols=104  Identities=19%  Similarity=0.085  Sum_probs=84.4

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCC-ceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p  100 (149)
                      .+.+.+..||+++..      -.-..+++||+.+.|++|+++| ++++++||.+... ++.+++++|+.++|...   .|
T Consensus       364 ~~~~~v~~~~~~~g~------i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~-a~~i~~~lgi~~~f~~~---~p  433 (556)
T TIGR01525       364 KTVVFVAVDGELLGV------IALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA-AEAVAAELGIDEVHAEL---LP  433 (556)
T ss_pred             cEEEEEEECCEEEEE------EEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH-HHHHHHHhCCCeeeccC---CH
Confidence            466888999988863      1122469999999999999999 9999999999998 89999999998888653   34


Q ss_pred             ChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013          101 CIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus       101 ~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      .+...+.-..+..+++|+.+.|+.|++.|+++||+
T Consensus       434 ~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~v  468 (556)
T TIGR01525       434 EDKLAIVKELQEEGGVVAMVGDGINDAPALAAADV  468 (556)
T ss_pred             HHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCE
Confidence            44345555555566799999999999999999984

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>smart00775 LNS2 LNS2 domain

Probab=98.79  E-value=6.9e-08  Score=71.36  Aligned_cols=112  Identities=13%  Similarity=0.120  Sum_probs=70.4

Q ss_pred             EEEEecCCcccccccccc---ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHH---HHHHHH-----cCCCC-C
Q 032013           24 LVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIA---KTFLHK-----LGIHS-M   91 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~---~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~---~~~l~~-----~gl~~-~   91 (149)
                      .|++|+||||++.....+   --++ -...|++.+++++++++|++++++|||+... +   +..++.     .++.. +
T Consensus         1 iVisDIDGTL~~sd~~~~~~~~~~~-~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~-~~~t~~~l~~~~~~~~~lp~g~   78 (157)
T smart00775        1 IVISDIDGTITKSDVLGHVVPIIGK-DWTHPGVAKLYRDIQNNGYKILYLTARPIGQ-ADRTRSYLSQIKQDGHNLPHGP   78 (157)
T ss_pred             CEEEecCCCCccccccccccccccc-CcCCHHHHHHHHHHHHcCCeEEEEcCCcHHH-HHHHHHHHHHhhhccccCCCce
Confidence            389999999998521100   0001 1468999999999999999999999999876 4   367766     33431 2


Q ss_pred             cccccc----------cCCChh--HHHHHH---hhCC---CcceEEEeehHhHHHHHHHhCCch
Q 032013           92 FVPMVR----------LSCCIM--CIIFFL---FFFS---ISAFILFVDLFCFMYAAAYVGCDL  137 (149)
Q Consensus        92 f~~~~~----------~~p~p~--~~i~~~---~~~~---~~~~l~~eDs~~gi~aa~~ag~~~  137 (149)
                      +....+          ...+|.  ..-.+.   ..++   ..-++.|-|..+.+.|=.++|++.
T Consensus        79 li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~  142 (157)
T smart00775       79 VLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPP  142 (157)
T ss_pred             EEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCCh
Confidence            221111          123331  111222   1122   234467888899999999999874

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=98.77  E-value=1.9e-08  Score=88.86  Aligned_cols=68  Identities=26%  Similarity=0.361  Sum_probs=56.2

Q ss_pred             CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      ....|+|++|+||||++.      +.   ...+.+.++|++|+++|++++++||++... +..+++.+++..++.+.+
T Consensus       413 ~~~~KLIfsDLDGTLLd~------d~---~i~~~t~eAL~~L~ekGI~~VIATGRs~~~-i~~l~~~Lgl~~~~I~eN  480 (694)
T PRK14502        413 GQFKKIVYTDLDGTLLNP------LT---YSYSTALDALRLLKDKELPLVFCSAKTMGE-QDLYRNELGIKDPFITEN  480 (694)
T ss_pred             CceeeEEEEECcCCCcCC------CC---ccCHHHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCCCeEEEcC
Confidence            344689999999999983      22   345678899999999999999999999998 699999999876666554

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=98.74  E-value=1.1e-08  Score=81.76  Aligned_cols=90  Identities=13%  Similarity=0.041  Sum_probs=63.4

Q ss_pred             CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------cccCCChhHHHHHH--hhCCCcceE
Q 032013           50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------VRLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ++++.++++.|+++|. ++|+||++........+...+...+|...         ...||+|....++.  .++++++|+
T Consensus       145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l  223 (279)
T TIGR01452       145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL  223 (279)
T ss_pred             HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence            4899999999999887 78999987643111122233443443322         23588885544444  457789999


Q ss_pred             EEeeh-HhHHHHHHHhCCchhhh
Q 032013          119 LFVDL-FCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       119 ~~eDs-~~gi~aa~~ag~~~~~~  140 (149)
                      .+.|+ ..+|++|++|||+++..
T Consensus       224 mIGD~~~tDI~~A~~aGi~si~V  246 (279)
T TIGR01452       224 MVGDRLETDILFGHRCGMTTVLV  246 (279)
T ss_pred             EECCChHHHHHHHHHcCCcEEEE
Confidence            99999 59999999999998765

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=98.73  E-value=3.3e-08  Score=74.81  Aligned_cols=55  Identities=33%  Similarity=0.457  Sum_probs=46.5

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      ++++|+||||++.      +.  .++.+.+.+.|++|+++|++++++|||+... +..+++.++
T Consensus         1 li~~D~DgTL~~~------~~--~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~   55 (204)
T TIGR01484         1 LLFFDLDGTLLDP------NA--HELSPETIEALERLREAGVKVVLVTGRSLAE-IKELLKQLP   55 (204)
T ss_pred             CEEEeCcCCCcCC------CC--CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHhCC
Confidence            4899999999972      21  2477899999999999999999999999998 688888744

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=98.67  E-value=3.1e-08  Score=77.60  Aligned_cols=61  Identities=16%  Similarity=0.122  Sum_probs=50.3

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      +|+.|+||||+++.     + ......|.+.+++++++++|++++++|||+... +..+++.+++...
T Consensus         3 li~tDlDGTLl~~~-----~-~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~-~~~~~~~~~~~~p   63 (249)
T TIGR01485         3 LLVSDLDNTLVDHT-----D-GDNQALLRLNALLEDHRGEDSLLVYSTGRSPHS-YKELQKQKPLLTP   63 (249)
T ss_pred             EEEEcCCCcCcCCC-----C-CChHHHHHHHHHHHHhhccCceEEEEcCCCHHH-HHHHHhcCCCCCC
Confidence            58889999999742     1 113577999999999999999999999999999 6888888887543

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>PRK11590 hypothetical protein; Provisional

Probab=98.66  E-value=1.3e-07  Score=72.49  Aligned_cols=91  Identities=12%  Similarity=0.041  Sum_probs=62.1

Q ss_pred             ccCccHHHHH-HHHHHCCceEEEEeCCCchHHHHHHHHHcCC---CCCcccc-c-cc-------CCChhHHHH-H--Hhh
Q 032013           48 YLYPHAKGIL-EALKEKGIHVAVASRSPAPDIAKTFLHKLGI---HSMFVPM-V-RL-------SCCIMCIIF-F--LFF  111 (149)
Q Consensus        48 ~~~pg~~e~L-~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl---~~~f~~~-~-~~-------~p~p~~~i~-~--~~~  111 (149)
                      .++||+.+.| ++++++|++++|+||++... ++.+++.+++   .+.+-.. + .+       ...-...+. +  ..+
T Consensus        95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~-~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~  173 (211)
T PRK11590         95 TAFPVVQERLTTYLLSSDADVWLITGSPQPL-VEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIG  173 (211)
T ss_pred             cCCccHHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhC
Confidence            5689999999 67899999999999999988 7999999885   3322111 0 11       011111111 1  123


Q ss_pred             CCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          112 FSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       112 ~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .+...|-++-||.+.+-=-..||=+..|
T Consensus       174 ~~~~~~~aY~Ds~~D~pmL~~a~~~~~v  201 (211)
T PRK11590        174 TPLRLYSGYSDSKQDNPLLYFCQHRWRV  201 (211)
T ss_pred             CCcceEEEecCCcccHHHHHhCCCCEEE
Confidence            3557888999999999888888766555

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=98.65  E-value=2e-08  Score=79.44  Aligned_cols=92  Identities=9%  Similarity=-0.111  Sum_probs=69.3

Q ss_pred             cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc---------ccCCChhHHHHHH--hhCCCcce
Q 032013           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV---------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~---------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      .++++.+.++.|++.+++++++||+++.. ........|+..+|+.+.         ..||+|.....+.  .++++++|
T Consensus       121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~-~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~  199 (257)
T TIGR01458       121 SYQILNQAFRLLLDGAKPLLIAIGKGRYY-KRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA  199 (257)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEeCCCCCC-cCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence            35788899999999999999999988765 344445556666665331         2488884443333  45778999


Q ss_pred             EEEeehH-hHHHHHHHhCCchhhhh
Q 032013          118 ILFVDLF-CFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       118 l~~eDs~-~gi~aa~~ag~~~~~~~  141 (149)
                      +.+.|+. .+|.+|+++|++++.+.
T Consensus       200 ~~vGD~~~~Di~~a~~~G~~~i~v~  224 (257)
T TIGR01458       200 VMIGDDCRDDVGGAQDCGMRGIQVR  224 (257)
T ss_pred             EEECCCcHHHHHHHHHcCCeEEEEC
Confidence            9999996 99999999999998763

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=98.62  E-value=2.5e-08  Score=78.00  Aligned_cols=89  Identities=9%  Similarity=-0.010  Sum_probs=65.9

Q ss_pred             CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc--------cccCCChhHHHHHHhhCC---CcceE
Q 032013           50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--------VRLSCCIMCIIFFLFFFS---ISAFI  118 (149)
Q Consensus        50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~--------~~~~p~p~~~i~~~~~~~---~~~~l  118 (149)
                      ++++.++++.++++|+++ |+||++... ....+...+...+|...        ...||+|.....+...++   +++|+
T Consensus       140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~-~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~  217 (242)
T TIGR01459       140 LDEFDELFAPIVARKIPN-ICANPDRGI-NQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML  217 (242)
T ss_pred             HHHHHHHHHHHHhCCCcE-EEECCCEec-cCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence            689999999999999997 889998766 45555556655444432        255888854444444443   46899


Q ss_pred             EEeeh-HhHHHHHHHhCCchhhh
Q 032013          119 LFVDL-FCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       119 ~~eDs-~~gi~aa~~ag~~~~~~  140 (149)
                      ++.|+ ..+|.+|+++||+++.+
T Consensus       218 ~vGD~~~~Di~~a~~~G~~~i~v  240 (242)
T TIGR01459       218 MVGDSFYTDILGANRLGIDTALV  240 (242)
T ss_pred             EECCCcHHHHHHHHHCCCeEEEE
Confidence            99999 69999999999998753

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>PLN02423 phosphomannomutase

Probab=98.61  E-value=8.9e-08  Score=75.35  Aligned_cols=56  Identities=23%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             CCCccEEE-EecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013           19 ENLPRLVV-FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (149)
Q Consensus        19 ~~~~k~vi-fDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~   85 (149)
                      .++++.++ ||+||||++      +++   .+.|.+.+++++|+++ ++++++|||+... ....+..
T Consensus         3 ~~~~~~i~~~D~DGTLl~------~~~---~i~~~~~~ai~~l~~~-i~fviaTGR~~~~-~~~~~~~   59 (245)
T PLN02423          3 ARKPGVIALFDVDGTLTA------PRK---EATPEMLEFMKELRKV-VTVGVVGGSDLSK-ISEQLGK   59 (245)
T ss_pred             CCccceEEEEeccCCCcC------CCC---cCCHHHHHHHHHHHhC-CEEEEECCcCHHH-HHHHhcc
Confidence            34566555 999999998      332   4678889999999987 9999999997766 3444443

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=98.61  E-value=5e-07  Score=66.91  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=70.7

Q ss_pred             cEEEEecCCcccccccc--ccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCC---c-----------hHHHHHHHHH
Q 032013           23 RLVVFDLDYTLWPFYCE--CCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSP---A-----------PDIAKTFLHK   85 (149)
Q Consensus        23 k~vifDlDGTLld~~~~--~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~---~-----------~~i~~~~l~~   85 (149)
                      |..+||+||||......  +..+.....+. |++.+.|++|++.||.++|+||..   +           .. +..+++.
T Consensus         1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~k-i~~il~~   79 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEK-IENILKE   79 (159)
T ss_dssp             SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHH-HHHHHHH
T ss_pred             CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHH-HHHHHHH
Confidence            46899999999984211  11122223444 589999999999999999999762   2           23 4566777


Q ss_pred             cCCCCCcccc----cccCCChhHHHHHHhh------CCCcceEEEeeh-----------HhHHHHHHHhCCch
Q 032013           86 LGIHSMFVPM----VRLSCCIMCIIFFLFF------FSISAFILFVDL-----------FCFMYAAAYVGCDL  137 (149)
Q Consensus        86 ~gl~~~f~~~----~~~~p~p~~~i~~~~~------~~~~~~l~~eDs-----------~~gi~aa~~ag~~~  137 (149)
                      +++.-.+-..    ..-||.|.-.-++...      ++.++|+.+=|+           -....=|.+.|++-
T Consensus        80 l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f  152 (159)
T PF08645_consen   80 LGIPIQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF  152 (159)
T ss_dssp             CTS-EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred             cCCceEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence            7776322111    3558888665555532      244889999996           57788888888864

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>TIGR01675 plant-AP plant acid phosphatase

Probab=98.60  E-value=1.9e-07  Score=73.13  Aligned_cols=90  Identities=18%  Similarity=0.088  Sum_probs=66.1

Q ss_pred             CcHHHhHHHHHhhhh---ccCCCccEEEEecCCcccccccccc-----------------ccCCCCccCccHHHHHHHHH
Q 032013            2 GDLEKVKNEALEIIG---QFENLPRLVVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALK   61 (149)
Q Consensus         2 ~~~~~~~~~~~~~~~---~~~~~~k~vifDlDGTLld~~~~~~-----------------~~~~~~~~~pg~~e~L~~Lk   61 (149)
                      +|++.+.++|.....   .......+++||+|.|++++.++..                 -.....+..|++.++++.|+
T Consensus        54 ~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~  133 (229)
T TIGR01675        54 RDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKII  133 (229)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            477777777755442   2334578999999999999654310                 01234689999999999999


Q ss_pred             HCCceEEEEeCCCchH--HHHHHHHHcCCCCC
Q 032013           62 EKGIHVAVASRSPAPD--IAKTFLHKLGIHSM   91 (149)
Q Consensus        62 ~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~   91 (149)
                      ++|++++++|||+...  .+...|...|+..+
T Consensus       134 ~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~  165 (229)
T TIGR01675       134 ELGIKIFLLSGRWEELRNATLDNLINAGFTGW  165 (229)
T ss_pred             HCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence            9999999999998533  14677888888764

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=98.59  E-value=2.2e-07  Score=81.09  Aligned_cols=104  Identities=18%  Similarity=0.111  Sum_probs=82.3

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      .+.+.++.||++...-.      -..+++|++.+++++|+++|++++++||.+... ++.+++++|++ +|.   ...|+
T Consensus       385 ~~~~~~~~~~~~~g~~~------~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~-a~~ia~~lgi~-~~~---~~~p~  453 (562)
T TIGR01511       385 STSVLVAVNGELAGVFA------LEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT-AKAVAKELGIN-VRA---EVLPD  453 (562)
T ss_pred             CEEEEEEECCEEEEEEE------ecccccHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCc-EEc---cCChH
Confidence            35688899999875210      113689999999999999999999999999988 89999999996 443   23455


Q ss_pred             hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCc
Q 032013          102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCD  136 (149)
Q Consensus       102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~  136 (149)
                      +...+.-..+-+.++|+.+.|+.|++.|+++||+.
T Consensus       454 ~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vg  488 (562)
T TIGR01511       454 DKAALIKELQEKGRVVAMVGDGINDAPALAQADVG  488 (562)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEE
Confidence            55555555555678999999999999999999864

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=98.58  E-value=2.5e-07  Score=80.28  Aligned_cols=102  Identities=18%  Similarity=0.027  Sum_probs=81.1

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCCh
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p  102 (149)
                      .+.+-.||++...      -....+++||+.+.|++|+++|+ +++++||.+... ++..++++|++++|...   .|.+
T Consensus       344 ~~~v~~~~~~~g~------i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~-a~~i~~~lgi~~~f~~~---~p~~  413 (536)
T TIGR01512       344 IVHVARDGTYLGY------ILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAV-AERVARELGIDEVHAEL---LPED  413 (536)
T ss_pred             EEEEEECCEEEEE------EEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHH-HHHHHHHcCChhhhhcc---CcHH
Confidence            3556677777652      11223689999999999999999 999999999988 89999999998887533   3555


Q ss_pred             hHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013          103 MCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus       103 ~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      ...+....+...++++.+.|+.|++.|+++||+
T Consensus       414 K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~v  446 (536)
T TIGR01512       414 KLEIVKELREKYGPVAMVGDGINDAPALAAADV  446 (536)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCE
Confidence            445555566666899999999999999999995

.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=98.57  E-value=1.2e-07  Score=75.54  Aligned_cols=61  Identities=16%  Similarity=0.049  Sum_probs=48.7

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHH-CCceEEEEeCCCchHHHHHHHHHcCC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGI   88 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~-~Gi~i~IaT~~~~~~i~~~~l~~~gl   88 (149)
                      .++++|+||||++..    ++.....+.|.+.+.|+.|++ .|++++|+|||+... +..+++.+++
T Consensus        15 ~li~~D~DGTLl~~~----~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~-~~~~~~~~~~   76 (266)
T PRK10187         15 YAWFFDLDGTLAEIK----PHPDQVVVPDNILQGLQLLATANDGALALISGRSMVE-LDALAKPYRF   76 (266)
T ss_pred             EEEEEecCCCCCCCC----CCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHH-HHHhcCcccc
Confidence            589999999999831    222234678999999999998 799999999999998 6777766553

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.55  E-value=3.2e-07  Score=67.83  Aligned_cols=102  Identities=15%  Similarity=0.014  Sum_probs=68.7

Q ss_pred             ccEEEEecCCcccccccccc-c-------------------------cCCCCccCccHHHHHHHHHHCCceEEEEeCCCc
Q 032013           22 PRLVVFDLDYTLWPFYCECC-Y-------------------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~-~-------------------------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~   75 (149)
                      ...+++|+|.||+.+..... +                         ....+.++||+.++|++|++. ++++|+|++++
T Consensus         6 kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~   84 (156)
T TIGR02250         6 KLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTR   84 (156)
T ss_pred             ceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcH
Confidence            35699999999998632210 0                         011245789999999999965 99999999999


Q ss_pred             hHHHHHHHHHcCCCC-Cccc-ccccCCChhHHHHHH-----hhCCCcceEEEeehHhHH
Q 032013           76 PDIAKTFLHKLGIHS-MFVP-MVRLSCCIMCIIFFL-----FFFSISAFILFVDLFCFM  127 (149)
Q Consensus        76 ~~i~~~~l~~~gl~~-~f~~-~~~~~p~p~~~i~~~-----~~~~~~~~l~~eDs~~gi  127 (149)
                      .. +..+++.++... +|.. +......-  ..+.+     .+.+.+..++++|++.--
T Consensus        85 ~y-A~~vl~~ldp~~~~F~~ri~~rd~~~--~~~~KdL~~i~~~d~~~vvivDd~~~~~  140 (156)
T TIGR02250        85 AY-AQAIAKLIDPDGKYFGDRIISRDESG--SPHTKSLLRLFPADESMVVIIDDREDVW  140 (156)
T ss_pred             HH-HHHHHHHhCcCCCeeccEEEEeccCC--CCccccHHHHcCCCcccEEEEeCCHHHh
Confidence            99 899999999884 7732 21111100  11222     233457788999998543

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=98.51  E-value=7.4e-07  Score=72.72  Aligned_cols=100  Identities=15%  Similarity=0.080  Sum_probs=64.4

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC----CceEEEEeCCC---chHHHHHHHHHcCCCCCccccc
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSP---APDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~----Gi~i~IaT~~~---~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      +++||+||||+++          ..+.|++.++++.|+++    |+++.++||+.   ....++.+.+.+|+.  ++..+
T Consensus         2 ~~ifD~DGvL~~g----------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~--~~~~~   69 (321)
T TIGR01456         2 GFAFDIDGVLFRG----------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD--VSPLQ   69 (321)
T ss_pred             EEEEeCcCceECC----------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC--CCHHH
Confidence            5899999999984          14689999999999999    99999999886   344233344778875  44444


Q ss_pred             ccCCChhHHHHHHhhCCCcceEEE-eehHhHHHHHHHhCCchhh
Q 032013           97 RLSCCIMCIIFFLFFFSISAFILF-VDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        97 ~~~p~p~~~i~~~~~~~~~~~l~~-eDs~~gi~aa~~ag~~~~~  139 (149)
                      +..+......|+ ....- ..+++ +++.  ...+.++|.+.++
T Consensus        70 i~~s~~~~~~ll-~~~~~-~v~viG~~~~--~~~l~~~G~~~vv  109 (321)
T TIGR01456        70 VIQSHSPYKSLV-NKYEK-RILAVGTGSV--RGVAEGYGFQNVV  109 (321)
T ss_pred             HHhhhHHHHHHH-HHcCC-ceEEEeChHH--HHHHHHcCCcccc
Confidence            444443233333 32222 23333 3432  5555577877655

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=98.50  E-value=6.1e-07  Score=70.08  Aligned_cols=73  Identities=23%  Similarity=0.293  Sum_probs=51.6

Q ss_pred             EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC---chHHHHHHHHH-cCCCCCcccccccCC
Q 032013           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHK-LGIHSMFVPMVRLSC  100 (149)
Q Consensus        25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~---~~~i~~~~l~~-~gl~~~f~~~~~~~p  100 (149)
                      ++||+||||+++      .    .++|++.++++.++++|+++.++||++   +.. ....+.. .|+.  ++..+...|
T Consensus         1 ~lfD~DGvL~~~------~----~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~-~~~~l~~~~g~~--~~~~~iits   67 (236)
T TIGR01460         1 FLFDIDGVLWLG------H----KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEED-YAEKLSSLLGVD--VSPDQIITS   67 (236)
T ss_pred             CEEeCcCccCcC------C----ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHH-HHHHHHHhcCCC--CCHHHeeeH
Confidence            589999999984      1    468899999999999999999999665   334 3455555 6764  344445555


Q ss_pred             ChhHHHHHHh
Q 032013          101 CIMCIIFFLF  110 (149)
Q Consensus       101 ~p~~~i~~~~  110 (149)
                      .-....|++.
T Consensus        68 ~~~~~~~l~~   77 (236)
T TIGR01460        68 GSVTKDLLRQ   77 (236)
T ss_pred             HHHHHHHHHH
Confidence            4444555553

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=98.43  E-value=1.3e-06  Score=67.32  Aligned_cols=91  Identities=10%  Similarity=0.003  Sum_probs=60.1

Q ss_pred             ccCccHHHHHH-HHHHCCceEEEEeCCCchHHHHHHHHHcCC---CCCcccc----cccC-CCh----hHHHH-H--Hhh
Q 032013           48 YLYPHAKGILE-ALKEKGIHVAVASRSPAPDIAKTFLHKLGI---HSMFVPM----VRLS-CCI----MCIIF-F--LFF  111 (149)
Q Consensus        48 ~~~pg~~e~L~-~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl---~~~f~~~----~~~~-p~p----~~~i~-~--~~~  111 (149)
                      .++|++.+.|+ +++++|++++|+||++... ++.+.+..++   .+.+-..    .+.. ..|    ...+. +  ..+
T Consensus        94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~-~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~  172 (210)
T TIGR01545        94 TAFPLVAERLRQYLESSDADIWLITGSPQPL-VEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIG  172 (210)
T ss_pred             CCCccHHHHHHHHHHhCCCEEEEEcCCcHHH-HHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhC
Confidence            57999999995 8899999999999999887 7888877544   2222111    1110 111    01111 1  123


Q ss_pred             CCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          112 FSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       112 ~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .+.+.|-++-||.+.+-=-..||=+..|
T Consensus       173 ~~~~~~~aYsDS~~D~pmL~~a~~~~~V  200 (210)
T TIGR01545       173 SPLKLYSGYSDSKQDNPLLAFCEHRWRV  200 (210)
T ss_pred             CChhheEEecCCcccHHHHHhCCCcEEE
Confidence            3446788999999999888777766554

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=98.43  E-value=1.1e-06  Score=70.30  Aligned_cols=90  Identities=16%  Similarity=0.104  Sum_probs=63.8

Q ss_pred             CcHHHhHHHHHhhhhc-cCCCccEEEEecCCccccccccc---------------c---ccCCCCccCccHHHHHHHHHH
Q 032013            2 GDLEKVKNEALEIIGQ-FENLPRLVVFDLDYTLWPFYCEC---------------C---YEDEIPYLYPHAKGILEALKE   62 (149)
Q Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~k~vifDlDGTLld~~~~~---------------~---~~~~~~~~~pg~~e~L~~Lk~   62 (149)
                      +|++.+-.+|...... ......+++||+|+|++++.++.               +   -.....+..|++.++.+++++
T Consensus        80 ~D~~~v~~~a~~y~~~~~~~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~  159 (275)
T TIGR01680        80 SDSKTVNQQAYFFARDLEVHEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVS  159 (275)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHH
Confidence            5777777777554321 22235899999999999753331               1   011246789999999999999


Q ss_pred             CCceEEEEeCCCchH--HHHHHHHHcCCCCC
Q 032013           63 KGIHVAVASRSPAPD--IAKTFLHKLGIHSM   91 (149)
Q Consensus        63 ~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~   91 (149)
                      +|++++++|||+...  .+...|+..|+..+
T Consensus       160 ~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~  190 (275)
T TIGR01680       160 LGFKIIFLSGRLKDKQAVTEANLKKAGYHTW  190 (275)
T ss_pred             CCCEEEEEeCCchhHHHHHHHHHHHcCCCCc
Confidence            999999999998532  15677778887653

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=98.43  E-value=2e-07  Score=72.28  Aligned_cols=61  Identities=25%  Similarity=0.282  Sum_probs=46.3

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC--ccccc
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM--FVPMV   96 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~--f~~~~   96 (149)
                      ++++|+||||++.      +.   .+ +...++++ ++++|++++++|||+... +..+++.+++..+  +...+
T Consensus         1 li~~DlDgTLl~~------~~---~~-~~~~~~~~-~~~~gi~~viaTGR~~~~-v~~~~~~l~l~~~~~~I~~n   63 (236)
T TIGR02471         1 LIITDLDNTLLGD------DE---GL-ASFVELLR-GSGDAVGFGIATGRSVES-AKSRYAKLNLPSPDVLIARV   63 (236)
T ss_pred             CeEEeccccccCC------HH---HH-HHHHHHHH-hcCCCceEEEEeCCCHHH-HHHHHHhCCCCCCCEEEECC
Confidence            4789999999972      21   23 33447777 699999999999999999 7999999987533  44444

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=98.42  E-value=6.3e-07  Score=69.69  Aligned_cols=60  Identities=28%  Similarity=0.423  Sum_probs=49.5

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      .+|.+||.|+||||+++.      .    -...+.+++.+|++.|++++.+||+++.+ ...+-+.+|+..
T Consensus         5 ~~~~lIFtDlD~TLl~~~------y----e~~pA~pv~~el~d~G~~Vi~~SSKT~aE-~~~l~~~l~v~~   64 (274)
T COG3769           5 QMPLLIFTDLDGTLLPHS------Y----EWQPAAPVLLELKDAGVPVILCSSKTRAE-MLYLQKSLGVQG   64 (274)
T ss_pred             ccceEEEEcccCcccCCC------C----CCCccchHHHHHHHcCCeEEEeccchHHH-HHHHHHhcCCCC
Confidence            458899999999999831      1    11356789999999999999999999999 588888899873

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=98.37  E-value=4.6e-06  Score=67.31  Aligned_cols=81  Identities=19%  Similarity=0.134  Sum_probs=63.4

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCccccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~   98 (149)
                      ..++++||.||+||.+          ..+.||+.++++.|++.|.++.++||++....  ..+.++.+|+.. +...+++
T Consensus        21 ~~DtfifDcDGVlW~g----------~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~   89 (306)
T KOG2882|consen   21 SFDTFIFDCDGVLWLG----------EKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIF   89 (306)
T ss_pred             hcCEEEEcCCcceeec----------CCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCccccc
Confidence            3788999999999973          25889999999999999999999999886552  234455677765 6667788


Q ss_pred             CCChhHHHHHHhhC
Q 032013           99 SCCIMCIIFFLFFF  112 (149)
Q Consensus        99 ~p~p~~~i~~~~~~  112 (149)
                      +|.-..--|++...
T Consensus        90 ssa~~~a~ylk~~~  103 (306)
T KOG2882|consen   90 SSAYAIADYLKKRK  103 (306)
T ss_pred             ChHHHHHHHHHHhC
Confidence            88887777776443

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=98.29  E-value=3.1e-07  Score=69.42  Aligned_cols=86  Identities=14%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCch-------HHHHHHHHHc-CCCCCcccccccCCChhHHHHHHhhCCCcc
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAP-------DIAKTFLHKL-GIHSMFVPMVRLSCCIMCIIFFLFFFSISA  116 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~-------~i~~~~l~~~-gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~  116 (149)
                      ...++.||+.|+|++|.+.|+.+.++|+++..       . ....+++. +.. .++.. +...+-       ..++  .
T Consensus        70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~-k~~Wl~~hf~~i-~~~~~-~~~~~K-------~~v~--~  137 (191)
T PF06941_consen   70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEE-KREWLERHFPFI-PYDNL-IFTGDK-------TLVG--G  137 (191)
T ss_dssp             TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHH-HHHHHHHHHTHH-HHCCE-EEESSG-------GGC----
T ss_pred             cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHH-HHHHHHHHcCCC-chheE-EEecCC-------CeEe--c
Confidence            35789999999999999999888888877654       2 34555554 210 01111 111111       1122  1


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      =+.+||++.-+.++..+|++++++.+
T Consensus       138 DvlIDD~~~n~~~~~~~g~~~iLfd~  163 (191)
T PF06941_consen  138 DVLIDDRPHNLEQFANAGIPVILFDQ  163 (191)
T ss_dssp             SEEEESSSHHHSS-SSESSEEEEE--
T ss_pred             cEEecCChHHHHhccCCCceEEEEcC
Confidence            28999999999999999999998753

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=98.29  E-value=2.8e-06  Score=68.16  Aligned_cols=70  Identities=27%  Similarity=0.347  Sum_probs=59.2

Q ss_pred             CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      ...|..|+||+|.||+.      ++++.-...|.+.+.|.+|+++|..+++-|.+.++. +...++.+++.++|+.+
T Consensus       119 ~~~phVIVfDlD~TLIt------d~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH-V~~sl~~~~L~~~Fd~i  188 (297)
T PF05152_consen  119 WEPPHVIVFDLDSTLIT------DEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREH-VRHSLKELKLEGYFDII  188 (297)
T ss_pred             CCCCcEEEEECCCcccc------cCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHH-HHHHHHHhCCccccEEE
Confidence            34578999999999997      333222355788899999999999999999999999 79999999999999876

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=98.27  E-value=6.4e-07  Score=70.04  Aligned_cols=70  Identities=21%  Similarity=0.281  Sum_probs=53.9

Q ss_pred             CCccEEEEecCCcccccccc------------------ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HH
Q 032013           20 NLPRLVVFDLDYTLWPFYCE------------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IA   79 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~------------------~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~   79 (149)
                      ..+.+|+||+|+|++++..+                  |...+. .+..||+.+++++++++|+.|+++|||+...  .+
T Consensus        70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~-~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T  148 (229)
T PF03767_consen   70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGK-APAIPGALELYNYARSRGVKVFFITGRPESQREAT  148 (229)
T ss_dssp             TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTG-GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred             CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhccc-CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence            45889999999999985333                  112222 4789999999999999999999999997542  15


Q ss_pred             HHHHHHcCCCC
Q 032013           80 KTFLHKLGIHS   90 (149)
Q Consensus        80 ~~~l~~~gl~~   90 (149)
                      ...|+..|+..
T Consensus       149 ~~nL~~~G~~~  159 (229)
T PF03767_consen  149 EKNLKKAGFPG  159 (229)
T ss_dssp             HHHHHHHTTST
T ss_pred             HHHHHHcCCCc
Confidence            67788889654

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=98.25  E-value=2.1e-06  Score=62.73  Aligned_cols=98  Identities=17%  Similarity=0.103  Sum_probs=61.5

Q ss_pred             cEEEEecCCcccccccccc----------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC-CCC
Q 032013           23 RLVVFDLDYTLWPFYCECC----------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI-HSM   91 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~----------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl-~~~   91 (149)
                      +++++|+||||+.....-.          ..+..+...||+.++|+++.+. +.++|.|++.... +..+++.+.- ..+
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~y-a~~v~~~ldp~~~~   78 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEY-AEPVLDALDPNGKL   78 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHH-HHHHHHHHTTTTSS
T ss_pred             CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhh-hhHHHHhhhhhccc
Confidence            5799999999998522100          0012356899999999999665 9999999999888 8999999886 445


Q ss_pred             ccccc----c-cCCChhHHHHHH----hhCCCcceEEEeehHhH
Q 032013           92 FVPMV----R-LSCCIMCIIFFL----FFFSISAFILFVDLFCF  126 (149)
Q Consensus        92 f~~~~----~-~~p~p~~~i~~~----~~~~~~~~l~~eDs~~g  126 (149)
                      |...-    . .....  .  .+    .+-+++..++++|++.-
T Consensus        79 ~~~~~~r~~~~~~~~~--~--~KdL~~l~~~~~~vvivDD~~~~  118 (159)
T PF03031_consen   79 FSRRLYRDDCTFDKGS--Y--IKDLSKLGRDLDNVVIVDDSPRK  118 (159)
T ss_dssp             EEEEEEGGGSEEETTE--E--E--GGGSSS-GGGEEEEES-GGG
T ss_pred             cccccccccccccccc--c--ccchHHHhhccccEEEEeCCHHH
Confidence            65431    1 00111  0  12    22346899999998864

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>PLN03017 trehalose-phosphatase

Probab=98.25  E-value=3e-06  Score=70.51  Aligned_cols=56  Identities=16%  Similarity=0.257  Sum_probs=44.0

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l   83 (149)
                      -.++++|+||||++.-    .+.....+.+++.+.|++|. ++++++|+|||+... +..++
T Consensus       111 ~~llflD~DGTL~Piv----~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~-l~~~~  166 (366)
T PLN03017        111 QIVMFLDYDGTLSPIV----DDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDK-VYNFV  166 (366)
T ss_pred             CeEEEEecCCcCcCCc----CCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHH-HHHhh
Confidence            4678889999999531    11233468899999999999 789999999999988 56664

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.21  E-value=7.9e-06  Score=74.35  Aligned_cols=105  Identities=11%  Similarity=-0.004  Sum_probs=80.9

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      .+.+++-.||+++..-      .-..+++|++.+.|++|+++|++++++||..... ++.+.+++|+.++|...   .|.
T Consensus       630 ~~~v~va~~~~~~g~~------~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~-a~~ia~~lgi~~~~~~~---~p~  699 (834)
T PRK10671        630 ATPVLLAVDGKAAALL------AIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT-ANAIAKEAGIDEVIAGV---LPD  699 (834)
T ss_pred             CeEEEEEECCEEEEEE------EccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCEEEeCC---CHH
Confidence            4567777888876411      0112688999999999999999999999999888 79999999998766542   344


Q ss_pred             hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCc
Q 032013          102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCD  136 (149)
Q Consensus       102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~  136 (149)
                      +...+--..+..+++++.+-|+.|++.|+++||+-
T Consensus       700 ~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvg  734 (834)
T PRK10671        700 GKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVG  734 (834)
T ss_pred             HHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCee
Confidence            43343334555667899999999999999999873

>COG4229 Predicted enolase-phosphatase [Energy production and conversion]

Probab=98.21  E-value=5.4e-06  Score=62.86  Aligned_cols=95  Identities=19%  Similarity=0.135  Sum_probs=74.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---C----CCCCcccccccCCChhHHHHHH--hhCCCcce
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---G----IHSMFVPMVRLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---g----l~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      .+++|++.+.|++.++.|+++.|-|+++... ..-++.+.   .    +..|||...+.|..-..+.-++  +|++|.+-
T Consensus       102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~A-QkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~ei  180 (229)
T COG4229         102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKA-QKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEI  180 (229)
T ss_pred             cccCHhHHHHHHHHHHcCCcEEEEcCCCchh-HHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchhe
Confidence            5799999999999999999999999998775 34444432   2    3456666556666654444443  77888999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      |++.|.+.-+.||+.+||+|+..-|
T Consensus       181 lFLSDn~~EL~AA~~vGl~t~l~~R  205 (229)
T COG4229         181 LFLSDNPEELKAAAGVGLATGLAVR  205 (229)
T ss_pred             EEecCCHHHHHHHHhcchheeeeec
Confidence            9999999999999999999987655

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=98.18  E-value=1.5e-05  Score=61.08  Aligned_cols=103  Identities=21%  Similarity=0.293  Sum_probs=69.4

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC--------
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM--------   91 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~--------   91 (149)
                      ...+++++|+|+||+++...  .........|++.++|+.+.+ .+.++|-|++.... ++.+++.+++...        
T Consensus        19 ~~kklLVLDLDeTLvh~~~~--~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~y-a~~~l~~l~~~~~~~~~i~~~   94 (195)
T TIGR02245        19 EGKKLLVLDIDYTLFDHRSP--AETGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKW-IEIKMTELGVLTNPNYKITFL   94 (195)
T ss_pred             CCCcEEEEeCCCceEccccc--CCCceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHH-HHHHHHHhcccCCccceEEEE
Confidence            34589999999999985211  122335788999999999999 59999999999888 7999998865321        


Q ss_pred             cccc---------cc-cCCChhHHHHHHh--hCCCcceEEEeehHhH
Q 032013           92 FVPM---------VR-LSCCIMCIIFFLF--FFSISAFILFVDLFCF  126 (149)
Q Consensus        92 f~~~---------~~-~~p~p~~~i~~~~--~~~~~~~l~~eDs~~g  126 (149)
                      .+..         .+ +.-++...+....  +.+.++.|.+.||+.-
T Consensus        95 ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~  141 (195)
T TIGR02245        95 LDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRN  141 (195)
T ss_pred             eccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHH
Confidence            0000         11 0123333443332  2366899999999854

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]

Probab=98.17  E-value=4.2e-06  Score=59.76  Aligned_cols=70  Identities=39%  Similarity=0.594  Sum_probs=56.5

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      |+++.+|+|+|+++..+...+.++....++.+...|..|+++|+.++++|++....++...|+.+.+..-
T Consensus        18 P~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~   87 (144)
T KOG4549|consen   18 PRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQT   87 (144)
T ss_pred             eEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcc
Confidence            5666666666666655554566777889999999999999999999999999988778899998877543

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=98.15  E-value=4.7e-06  Score=68.86  Aligned_cols=95  Identities=15%  Similarity=0.090  Sum_probs=72.5

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc-C-------CCCCcccccccCCCh---------------
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G-------IHSMFVPMVRLSCCI---------------  102 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~-g-------l~~~f~~~~~~~p~p---------------  102 (149)
                      .+...||+.++|++|+++|++++|+||++... ++..++.+ |       +.++|+.+....-+|               
T Consensus       182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~y-t~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~  260 (343)
T TIGR02244       182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY-TDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVE  260 (343)
T ss_pred             HhccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence            35678999999999999999999999999999 79999996 7       889998773322111               


Q ss_pred             ------h-------HHHHH---------HhhCCCcceEEEee-hHhHHHHHH-HhCCchhhhh
Q 032013          103 ------M-------CIIFF---------LFFFSISAFILFVD-LFCFMYAAA-YVGCDLYVYK  141 (149)
Q Consensus       103 ------~-------~~i~~---------~~~~~~~~~l~~eD-s~~gi~aa~-~ag~~~~~~~  141 (149)
                            .       +.+|.         ..+...++++.+=| ....|.+|+ .+|++|+.+.
T Consensus       261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~  323 (343)
T TIGR02244       261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAII  323 (343)
T ss_pred             CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEc
Confidence                  0       01222         14566688898877 567799898 8999999654

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PLN02151 trehalose-phosphatase

Probab=98.10  E-value=7.2e-06  Score=67.98  Aligned_cols=57  Identities=16%  Similarity=0.272  Sum_probs=45.8

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~   84 (149)
                      -.++++|+||||.+.    .++.....+.|++.+.|+.|.+ +.+++|+||++... +...+.
T Consensus        98 ~~ll~lDyDGTL~PI----v~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~-l~~~~~  154 (354)
T PLN02151         98 QIVMFLDYDGTLSPI----VDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREK-VSSFVK  154 (354)
T ss_pred             ceEEEEecCccCCCC----CCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHH-HHHHcC
Confidence            467889999999974    2334446788999999999995 57999999999888 576664

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=98.05  E-value=7.7e-06  Score=73.41  Aligned_cols=62  Identities=26%  Similarity=0.350  Sum_probs=49.3

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGI   88 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl   88 (149)
                      .++++||+||||++..    .......+.+.+.+.|+.|.+. |+.++|+||++... .+..+...++
T Consensus       492 ~rLi~~D~DGTL~~~~----~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~-l~~~~~~~~l  554 (726)
T PRK14501        492 RRLLLLDYDGTLVPFA----PDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDT-LERWFGDLPI  554 (726)
T ss_pred             ceEEEEecCccccCCC----CCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHH-HHHHhCCCCe
Confidence            5899999999999841    1222235778999999999994 99999999999998 5877776553

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=98.03  E-value=8.4e-06  Score=64.09  Aligned_cols=50  Identities=20%  Similarity=0.306  Sum_probs=44.0

Q ss_pred             CCCccCccHHHHHHHH--HHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           45 EIPYLYPHAKGILEAL--KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~L--k~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      +.+++.||+.++++.+  ++.|+.++|+|.+..-. ++.+|++.|+...|+.+
T Consensus        68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~f-I~~iL~~~gl~~~f~~I  119 (234)
T PF06888_consen   68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFF-IETILEHHGLRDCFSEI  119 (234)
T ss_pred             HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhH-HHHHHHhCCCccccceE
Confidence            4578999999999999  45799999999998888 79999999999887655

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>PLN02580 trehalose-phosphatase

Probab=98.02  E-value=1.5e-05  Score=66.79  Aligned_cols=58  Identities=12%  Similarity=0.142  Sum_probs=47.8

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~   85 (149)
                      -.++++|.||||.+.    .++.....+.|++.+.|+.|.+. .+++|+|||+... ++.++.-
T Consensus       119 ~~~LfLDyDGTLaPI----v~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~-L~~~l~~  176 (384)
T PLN02580        119 KIALFLDYDGTLSPI----VDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDK-VYELVGL  176 (384)
T ss_pred             CeEEEEecCCccCCC----CCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHH-HHHHhCC
Confidence            467888999999985    24445578899999999999998 5899999999988 5777654

>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=97.97  E-value=1.6e-05  Score=60.80  Aligned_cols=85  Identities=16%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--------Ccccc------------cccCCChh
Q 032013           44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--------MFVPM------------VRLSCCIM  103 (149)
Q Consensus        44 ~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--------~f~~~------------~~~~p~p~  103 (149)
                      .+..++.||++|+..+|+++|.++.++||+-+.. +..+..++|++.        .|+..            .....++.
T Consensus        84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~-i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~  162 (227)
T KOG1615|consen   84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQL-IEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAE  162 (227)
T ss_pred             cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHH
Confidence            3456899999999999999999999999999888 799999999975        12221            01133443


Q ss_pred             HHHHHHhhCCCcceEEEeehHhHHHH
Q 032013          104 CIIFFLFFFSISAFILFVDLFCFMYA  129 (149)
Q Consensus       104 ~~i~~~~~~~~~~~l~~eDs~~gi~a  129 (149)
                      ..-++..+++.+.-..+=|-.+.+.|
T Consensus       163 ~i~~lrk~~~~~~~~mvGDGatDlea  188 (227)
T KOG1615|consen  163 VIALLRKNYNYKTIVMVGDGATDLEA  188 (227)
T ss_pred             HHHHHHhCCChheeEEecCCcccccc
Confidence            35555566665666666677776665

>PLN02645 phosphoglycolate phosphatase

Probab=97.97  E-value=7.3e-06  Score=66.55  Aligned_cols=89  Identities=13%  Similarity=0.060  Sum_probs=57.2

Q ss_pred             cHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------cccCCChhHHHHHH--hhCCCcceEEE
Q 032013           52 HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------VRLSCCIMCIIFFL--FFFSISAFILF  120 (149)
Q Consensus        52 g~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~~~~p~p~~~i~~~--~~~~~~~~l~~  120 (149)
                      ........|++++-..+|+||.+........+...|...+|..+         ...||+|....++.  .++++++|+.+
T Consensus       174 ~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~V  253 (311)
T PLN02645        174 KIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMV  253 (311)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEE
Confidence            33445566665434688899987632011222334444444433         12477774444443  45778999999


Q ss_pred             eehH-hHHHHHHHhCCchhhh
Q 032013          121 VDLF-CFMYAAAYVGCDLYVY  140 (149)
Q Consensus       121 eDs~-~gi~aa~~ag~~~~~~  140 (149)
                      .|++ .+|.+|++||++++.+
T Consensus       254 GD~~~~Di~~A~~aG~~~ilV  274 (311)
T PLN02645        254 GDRLDTDILFGQNGGCKTLLV  274 (311)
T ss_pred             cCCcHHHHHHHHHcCCCEEEE
Confidence            9997 9999999999999865

>TIGR00685 T6PP trehalose-phosphatase

Probab=97.91  E-value=1.8e-05  Score=61.97  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=41.1

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchH
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPD   77 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~   77 (149)
                      -++++||+||||.+..    ++.....+.|++.+.|+.|.+. +..++|+||++...
T Consensus         3 ~~~l~lD~DGTL~~~~----~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~   55 (244)
T TIGR00685         3 KRAFFFDYDGTLSEIV----PDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLE   55 (244)
T ss_pred             cEEEEEecCccccCCc----CCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhh
Confidence            4679999999999841    2334456889999999999877 56788999998766

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B

Probab=97.90  E-value=1.4e-05  Score=51.56  Aligned_cols=45  Identities=16%  Similarity=-0.119  Sum_probs=37.1

Q ss_pred             ccCCChhHHHHHH--hhCCCcceEEEeeh-HhHHHHHHHhCCchhhhh
Q 032013           97 RLSCCIMCIIFFL--FFFSISAFILFVDL-FCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        97 ~~~p~p~~~i~~~--~~~~~~~~l~~eDs-~~gi~aa~~ag~~~~~~~  141 (149)
                      ..||+|....++.  .++++++|+++.|+ ..+|.+|+++||+++.+.
T Consensus         2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~   49 (75)
T PF13242_consen    2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVL   49 (75)
T ss_dssp             CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEES
T ss_pred             CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEEC
Confidence            4589996655555  45677999999999 999999999999998764

...

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=97.90  E-value=2.4e-05  Score=71.51  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=47.6

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHH-HHCCceEEEEeCCCchHHHHHHHHHc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL-KEKGIHVAVASRSPAPDIAKTFLHKL   86 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~L-k~~Gi~i~IaT~~~~~~i~~~~l~~~   86 (149)
                      +.+++++|+||||++.      ......+.|++.++|+.| ++.|..++|+||++... ++..+...
T Consensus       595 ~~rlI~LDyDGTLlp~------~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~-L~~~f~~~  654 (854)
T PLN02205        595 TTRAILLDYDGTLMPQ------ASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKT-LADWFSPC  654 (854)
T ss_pred             cCeEEEEecCCcccCC------ccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHH-HHHHhCCC
Confidence            4689999999999973      111345778999999998 77799999999999998 68877543

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=97.89  E-value=3.9e-05  Score=56.88  Aligned_cols=109  Identities=17%  Similarity=0.095  Sum_probs=70.4

Q ss_pred             EEEecCCcccccccccc---ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHc-----CCCCC---
Q 032013           25 VVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKL-----GIHSM---   91 (149)
Q Consensus        25 vifDlDGTLld~~~~~~---~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~-----gl~~~---   91 (149)
                      |++|+|||++.++...+   --+. -...||+.++.+.++++||++.-+|+|+...  .++..|+..     +++.-   
T Consensus         2 VvsDIDGTiT~SD~~G~i~~~~G~-d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~   80 (157)
T PF08235_consen    2 VVSDIDGTITKSDVLGHILPILGK-DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVL   80 (157)
T ss_pred             EEEeccCCcCccchhhhhhhccCc-hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEE
Confidence            79999999999643211   1112 1577999999999999999999999998532  256777776     54431   


Q ss_pred             cccc--------cccCCChhHHHHH----H--hh-CC---CcceEEEeehHhHHHHHHHhCCc
Q 032013           92 FVPM--------VRLSCCIMCIIFF----L--FF-FS---ISAFILFVDLFCFMYAAAYVGCD  136 (149)
Q Consensus        92 f~~~--------~~~~p~p~~~i~~----~--~~-~~---~~~~l~~eDs~~gi~aa~~ag~~  136 (149)
                      +...        +....+|  ..|=    .  .. ++   ..-.-.|=.....+.|=+++|++
T Consensus        81 ~sP~~l~~al~rEvi~~~p--~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip  141 (157)
T PF08235_consen   81 LSPDSLFSALHREVISKDP--EEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP  141 (157)
T ss_pred             ECCcchhhhhhccccccCh--HHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence            1100        2334455  3332    2  11 12   13335566888999999999976

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>PLN02382 probable sucrose-phosphatase

Probab=97.85  E-value=3.3e-05  Score=65.26  Aligned_cols=62  Identities=19%  Similarity=0.179  Sum_probs=45.1

Q ss_pred             cc-EEEEecCCccccccccccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           22 PR-LVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        22 ~k-~vifDlDGTLld~~~~~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      |+ +|+.||||||+++     .+.+  .+. +...++++.++++|+.++++|||+... +..+.+.+++...
T Consensus         8 ~~~lI~sDLDGTLL~~-----~~~~--~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~-~~~l~~~~~l~~p   71 (413)
T PLN02382          8 PRLMIVSDLDHTMVDH-----HDPE--NLSLLRFNALWEAEYRHDSLLVFSTGRSPTL-YKELRKEKPLLTP   71 (413)
T ss_pred             CCEEEEEcCCCcCcCC-----CCcc--chhHHHHHHHHHHhhcCCeeEEEEcCCCHHH-HHHHHHhCCCCCC
Confidence            44 5777999999983     1111  222 234455588999999999999999988 6888888876543

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=6.5e-05  Score=60.12  Aligned_cols=64  Identities=20%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcC
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      ....+++++|.||||.+.-    +......+.+++.++|+.|.++ ...++|+||++... .+.++.-.+
T Consensus        15 ~a~~~~~~lDyDGTl~~i~----~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~-l~~~~~v~~   79 (266)
T COG1877          15 NARKRLLFLDYDGTLTEIV----PHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAE-LERLFGVPG   79 (266)
T ss_pred             cccceEEEEeccccccccc----cCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHH-HHHhcCCCC
Confidence            3446889999999999863    3444567889999999999998 44699999999888 577766333

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=97.61  E-value=0.00016  Score=57.05  Aligned_cols=72  Identities=18%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             ccEEEEecCCcccccccc---------------cc--ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH-H--HHH
Q 032013           22 PRLVVFDLDYTLWPFYCE---------------CC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-I--AKT   81 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~---------------~~--~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~-i--~~~   81 (149)
                      ..+|+.|+|-|++|...+               |+  -+....++.||+.|++++.-++|..+..+|||..+. .  ...
T Consensus        79 ~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~  158 (274)
T COG2503          79 KKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIE  158 (274)
T ss_pred             CceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHH
Confidence            459999999999997666               11  122346799999999999999999999999997643 1  356


Q ss_pred             HHHHcCCCCCcc
Q 032013           82 FLHKLGIHSMFV   93 (149)
Q Consensus        82 ~l~~~gl~~~f~   93 (149)
                      -|+..|++..-.
T Consensus       159 nLk~~g~~~~~~  170 (274)
T COG2503         159 NLKSEGLPQVLE  170 (274)
T ss_pred             HHHHcCcccccc
Confidence            677788876433

>COG3700 AphA Acid phosphatase (class B) [General function prediction only]

Probab=97.61  E-value=0.00016  Score=54.82  Aligned_cols=120  Identities=16%  Similarity=0.037  Sum_probs=77.4

Q ss_pred             CCCccEEEEecCCcccccccccc------------------------cc-CCCCccCccHHHHHHHHHHCCceEEEEeCC
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECC------------------------YE-DEIPYLYPHAKGILEALKEKGIHVAVASRS   73 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~------------------------~~-~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~   73 (149)
                      .+.|-+|-||+|.|++-+.+.+.                        .. .+..-+.+-+++++..-+.+|-.+.++||+
T Consensus        60 G~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGR  139 (237)
T COG3700          60 GRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGR  139 (237)
T ss_pred             CCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecC
Confidence            34467899999999987544421                        11 133345556678888889999999999999


Q ss_pred             CchHH---HHHHHHHcCCCCCcccc-cccCCChhHHHHHHhhC--CCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           74 PAPDI---AKTFLHKLGIHSMFVPM-VRLSCCIMCIIFFLFFF--SISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        74 ~~~~i---~~~~l~~~gl~~~f~~~-~~~~p~p~~~i~~~~~~--~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      .+..+   ...+.+.+++......+ .+-+|.|  .-|-+..-  +-.--|.+-||-+.|.||+.||.+-|=.
T Consensus       140 t~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~--~qy~Kt~~i~~~~~~IhYGDSD~Di~AAkeaG~RgIRi  210 (237)
T COG3700         140 TPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKP--GQYTKTQWIQDKNIRIHYGDSDNDITAAKEAGARGIRI  210 (237)
T ss_pred             CCCcccccchhHHhhcccCCCcceeeccCCCCc--ccccccHHHHhcCceEEecCCchhhhHHHhcCccceeE
Confidence            87541   22333455664432222 3556666  44444221  1123478889999999999999886643

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=97.59  E-value=0.00059  Score=52.98  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=62.5

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCccccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~~~   98 (149)
                      .++.+++|+-|||...      +    ...||+.|++++|+.++.++-++||...++-  ....|+++|+.  ++..+++
T Consensus         6 ~v~gvLlDlSGtLh~e------~----~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~--v~eeei~   73 (262)
T KOG3040|consen    6 AVKGVLLDLSGTLHIE------D----AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFD--VSEEEIF   73 (262)
T ss_pred             ccceEEEeccceEecc------c----ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCC--ccHHHhc
Confidence            4788999999999972      2    3789999999999999999999999876541  35566677764  6667899


Q ss_pred             CCChhHHHHHH
Q 032013           99 SCCIMCIIFFL  109 (149)
Q Consensus        99 ~p~p~~~i~~~  109 (149)
                      .|.|.+.-|++
T Consensus        74 tsl~aa~~~~~   84 (262)
T KOG3040|consen   74 TSLPAARQYLE   84 (262)
T ss_pred             CccHHHHHHHH
Confidence            99999888886

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.49  E-value=0.00077  Score=60.93  Aligned_cols=102  Identities=14%  Similarity=-0.017  Sum_probs=75.5

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      .+.+.+=.||+++-.-.      =..+++|++.+.+++|+++|++++++||..... ++.+.+++|+..++.    ..|.
T Consensus       548 ~~~v~va~~~~~~g~i~------l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~-a~~ia~~lgi~~~~~----~~p~  616 (741)
T PRK11033        548 KTVVLVLRNDDVLGLIA------LQDTLRADARQAISELKALGIKGVMLTGDNPRA-AAAIAGELGIDFRAG----LLPE  616 (741)
T ss_pred             CEEEEEEECCEEEEEEE------EecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCeecC----CCHH
Confidence            45577777888765211      112689999999999999999999999999998 899999999975443    2333


Q ss_pred             hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013          102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus       102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      -.+.+--..+ ....++.+-|..|+..|.++|+.
T Consensus       617 ~K~~~v~~l~-~~~~v~mvGDgiNDapAl~~A~v  649 (741)
T PRK11033        617 DKVKAVTELN-QHAPLAMVGDGINDAPAMKAASI  649 (741)
T ss_pred             HHHHHHHHHh-cCCCEEEEECCHHhHHHHHhCCe
Confidence            3233333333 33678888999999999999973

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=97.44  E-value=0.00012  Score=56.90  Aligned_cols=53  Identities=26%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             EEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHH
Q 032013           26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFL   83 (149)
Q Consensus        26 ifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l   83 (149)
                      ++|.||||.+..    ++.....+.+++.++|+.|.+. +..++|+||++... .+.+.
T Consensus         1 ~lDyDGTL~p~~----~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~-~~~~~   54 (235)
T PF02358_consen    1 FLDYDGTLAPIV----DDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD-LERFG   54 (235)
T ss_dssp             EEE-TTTSS-------S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH-HHHH-
T ss_pred             CcccCCccCCCC----CCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH-hHHhc
Confidence            689999999953    3344467889999999999887 44699999999776 45543

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.0003  Score=53.51  Aligned_cols=42  Identities=21%  Similarity=0.165  Sum_probs=38.2

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      ..+.+-||.+++++++++++++++|+|++.... +..+++..+
T Consensus        70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~f-I~~lfe~iv  111 (220)
T COG4359          70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPF-IYPLFEGIV  111 (220)
T ss_pred             hhcccCccHHHHHHHHHHcCCCEEEEeCCCchH-HHHHHHhhc
Confidence            346789999999999999999999999999988 799999876

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=97.37  E-value=0.00014  Score=57.24  Aligned_cols=58  Identities=22%  Similarity=0.248  Sum_probs=39.8

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++++++|+||||+++      +.   .......++++...+.++.++++||++... +..+++..++.
T Consensus         2 ~~ll~sDlD~Tl~~~------~~---~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~-~~~~~~~~~l~   59 (247)
T PF05116_consen    2 PRLLASDLDGTLIDG------DD---EALARLEELLEQQARPEILFVYVTGRSLES-VLRLLREYNLP   59 (247)
T ss_dssp             SEEEEEETBTTTBHC------HH---HHHHHHHHHHHHHHCCGEEEEEE-SS-HHH-HHHHHHHCT-E
T ss_pred             CEEEEEECCCCCcCC------CH---HHHHHHHHHHHHhhCCCceEEEECCCCHHH-HHHHHHhCCCC
Confidence            467999999999942      11   122344455554447799999999999999 79999988764

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=97.25  E-value=0.00059  Score=62.94  Aligned_cols=65  Identities=20%  Similarity=0.084  Sum_probs=47.9

Q ss_pred             ccEEEEecCCccccccccccccC-----CCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYED-----EIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~-----~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      .+++++|.||||.+.........     ....+.|++.+.|+.|.+. +-.++|+||++... .+..+...+
T Consensus       591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~-Le~~fg~~~  661 (934)
T PLN03064        591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSV-LDENFGEFD  661 (934)
T ss_pred             ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHH-HHHHhCCCC
Confidence            47899999999998522110000     0345778899999999876 77899999999998 688886654

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=97.22  E-value=0.00043  Score=54.04  Aligned_cols=50  Identities=16%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             CCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           45 EIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      +..+..||+.++++.++++|. .++|+|-+..-. ++.+++++++.+.|..+
T Consensus        81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfF-Ie~~Lea~~~~d~F~~I  131 (256)
T KOG3120|consen   81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFF-IEEILEAAGIHDLFSEI  131 (256)
T ss_pred             hcCCCCccHHHHHHHHHhCCCceEEEEecCchhH-HHHHHHHccHHHHHHHH
Confidence            447899999999999999986 999999888887 79999999998887765

>PRK10444 UMP phosphatase; Provisional

Probab=97.20  E-value=0.0019  Score=50.95  Aligned_cols=44  Identities=11%  Similarity=-0.080  Sum_probs=34.8

Q ss_pred             ccCCChhHHHHHH--hhCCCcceEEEeehH-hHHHHHHHhCCchhhh
Q 032013           97 RLSCCIMCIIFFL--FFFSISAFILFVDLF-CFMYAAAYVGCDLYVY  140 (149)
Q Consensus        97 ~~~p~p~~~i~~~--~~~~~~~~l~~eDs~-~gi~aa~~ag~~~~~~  140 (149)
                      ..||+|....++.  .++++++|+++.|+. .+|.+|+++|++++.+
T Consensus       172 ~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV  218 (248)
T PRK10444        172 VGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILV  218 (248)
T ss_pred             cCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEE
Confidence            4588884444443  346789999999996 8999999999999865

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=97.19  E-value=0.00075  Score=61.47  Aligned_cols=64  Identities=23%  Similarity=0.100  Sum_probs=48.3

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      .+++++|.||||.+..... .......+.|++.+.|+.|.+. +-.++|+||++... .+..+...+
T Consensus       507 ~rll~LDyDGTL~~~~~~~-~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~-L~~~~~~~~  571 (797)
T PLN03063        507 NRLLILGFYGTLTEPRNSQ-IKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDI-LDKNFGEYN  571 (797)
T ss_pred             CeEEEEecCccccCCCCCc-cccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHH-HHHHhCCCC
Confidence            4789999999999742110 0123356888999999999876 78899999999998 688876543

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=97.14  E-value=0.0025  Score=49.69  Aligned_cols=44  Identities=11%  Similarity=-0.086  Sum_probs=33.3

Q ss_pred             ccCCChhHHHHHH--hhCCCcce-EEEeehH-hHHHHHHHhCCchhhh
Q 032013           97 RLSCCIMCIIFFL--FFFSISAF-ILFVDLF-CFMYAAAYVGCDLYVY  140 (149)
Q Consensus        97 ~~~p~p~~~i~~~--~~~~~~~~-l~~eDs~-~gi~aa~~ag~~~~~~  140 (149)
                      ..||+|...-++.  .++.++++ +++.|++ .+|++|+++|++++.+
T Consensus       186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v  233 (236)
T TIGR01460       186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLV  233 (236)
T ss_pred             ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEE
Confidence            4588885444444  34556676 9999998 8999999999998765

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.11  E-value=0.0026  Score=54.78  Aligned_cols=115  Identities=17%  Similarity=0.109  Sum_probs=71.2

Q ss_pred             ccCCCccEEEEecCCcccccccccc-------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           17 QFENLPRLVVFDLDYTLWPFYCECC-------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        17 ~~~~~~k~vifDlDGTLld~~~~~~-------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      +..+..|++++|+|+|||.+=...+       +.......+....+.+..|+++|+-++|+|-+.... +...+..+.-.
T Consensus       217 ~~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~d-a~evF~khp~M  295 (574)
T COG3882         217 MSGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKD-AKEVFRKHPDM  295 (574)
T ss_pred             hhCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhh-HHHHHhhCCCe
Confidence            3455578999999999998511100       111112455667789999999999999999888777 78888776521


Q ss_pred             ----CCccccc---ccCCChhHHHHHHhhCCC--cceEEEeehHhHHHHHHHhC
Q 032013           90 ----SMFVPMV---RLSCCIMCIIFFLFFFSI--SAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus        90 ----~~f~~~~---~~~p~p~~~i~~~~~~~~--~~~l~~eDs~~gi~aa~~ag  134 (149)
                          +-|....   -.|.+.  .-=.+..++.  .--+..+|+|.--.--++-+
T Consensus       296 iLkeedfa~~~iNW~~K~eN--irkIAkklNlg~dSmvFiDD~p~ErE~vk~~~  347 (574)
T COG3882         296 ILKEEDFAVFQINWDPKAEN--IRKIAKKLNLGLDSMVFIDDNPAERELVKREL  347 (574)
T ss_pred             EeeHhhhhhheecCCcchhh--HHHHHHHhCCCccceEEecCCHHHHHHHHhcC
Confidence                1122222   113333  3333344455  44455558888777666655

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=97.06  E-value=0.0015  Score=48.18  Aligned_cols=79  Identities=19%  Similarity=0.158  Sum_probs=56.1

Q ss_pred             CccHH----HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc-ccccc-----------CC-----ChhHHHHH
Q 032013           50 YPHAK----GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV-PMVRL-----------SC-----CIMCIIFF  108 (149)
Q Consensus        50 ~pg~~----e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~-~~~~~-----------~p-----~p~~~i~~  108 (149)
                      +|++.    ++|++++++|+++.|+|+++... ++.+++.+|+..... +....           .+     +.  ...-
T Consensus        87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~-i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~--~~l~  163 (192)
T PF12710_consen   87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEI-IEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKA--EALK  163 (192)
T ss_dssp             CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHH-HHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHH--HHHH
T ss_pred             CcCchhhHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHH--HHHH
Confidence            35555    99999999999999999998877 799999999876321 11110           00     22  1111


Q ss_pred             Hh------hCCCcceEEEeehHhHHHHHH
Q 032013          109 LF------FFSISAFILFVDLFCFMYAAA  131 (149)
Q Consensus       109 ~~------~~~~~~~l~~eDs~~gi~aa~  131 (149)
                      ..      ..+...++++=||.+.+.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~iGDs~~D~~~lr  192 (192)
T PF12710_consen  164 ELYIRDEEDIDPDRVIAIGDSINDLPMLR  192 (192)
T ss_dssp             HHHHHHHHTHTCCEEEEEESSGGGHHHHH
T ss_pred             HHHHHhhcCCCCCeEEEEECCHHHHHHhC
Confidence            12      466788999999999988764

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=96.95  E-value=0.0035  Score=57.72  Aligned_cols=87  Identities=13%  Similarity=0.015  Sum_probs=66.0

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----------------------cccCCChhHH
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----------------------VRLSCCIMCI  105 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----------------------~~~~p~p~~~  105 (149)
                      +++|++.+.++.|++.|+++.++||..... +..+.+++|+...+...                      ......|...
T Consensus       528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~t-A~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K  606 (884)
T TIGR01522       528 PPRPGVKEAVTTLITGGVRIIMITGDSQET-AVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK  606 (884)
T ss_pred             cchhHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence            689999999999999999999999999998 89999999997654322                      1224555443


Q ss_pred             HHHH--hhCCCcceEEEeehHhHHHHHHHhCC
Q 032013          106 IFFL--FFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus       106 i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      .-+-  .+-.-+.+...=|..|++.|.++|+.
T Consensus       607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdV  638 (884)
T TIGR01522       607 MKIVKALQKRGDVVAMTGDGVNDAPALKLADI  638 (884)
T ss_pred             HHHHHHHHHCCCEEEEECCCcccHHHHHhCCe
Confidence            3332  33233556667799999999999963

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>KOG1618 consensus Predicted phosphatase [General function prediction only]

Probab=96.93  E-value=0.0024  Score=52.36  Aligned_cols=56  Identities=21%  Similarity=0.208  Sum_probs=44.1

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC----CceEEEEeCCCc----hHHHHHHHHHcCCC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSPA----PDIAKTFLHKLGIH   89 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~----Gi~i~IaT~~~~----~~i~~~~l~~~gl~   89 (149)
                      =.++||+||+|+.+          ..+.|++.++|+.|.++    .+|++++||+.-    .. ++++-+.+|..
T Consensus        36 fgfafDIDGVL~RG----------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~r-A~~lS~~Lgv~   99 (389)
T KOG1618|consen   36 FGFAFDIDGVLFRG----------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSR-AQELSALLGVE   99 (389)
T ss_pred             eeEEEecccEEEec----------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhH-HHHHHHhhCCc
Confidence            36999999999985          25889999999999999    999999998742    23 45555666653

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=96.92  E-value=0.0022  Score=50.22  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=57.4

Q ss_pred             CccHHHHHHHHHHCCceEEEEeCCCc----hHHHHHHHHHcCCC------CCcccccccCCChhHHHHHH--hhCCCcce
Q 032013           50 YPHAKGILEALKEKGIHVAVASRSPA----PDIAKTFLHKLGIH------SMFVPMVRLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~----~~i~~~~l~~~gl~------~~f~~~~~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ++++.++++.++..+..+.++|+.+.    ..+.+.+.+.+++.      .+++.......++.+.-.+.  .+++++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~  218 (272)
T PRK10530        139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV  218 (272)
T ss_pred             eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence            45667777888777777888887543    12133444555543      12333233344555555555  56777899


Q ss_pred             EEEeehHhHHHHHHHhCCch
Q 032013          118 ILFVDLFCFMYAAAYVGCDL  137 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~  137 (149)
                      ++|-|+.|++..++.||.-+
T Consensus       219 i~~GD~~NDi~m~~~ag~~v  238 (272)
T PRK10530        219 VAFGDNFNDISMLEAAGLGV  238 (272)
T ss_pred             EEeCCChhhHHHHHhcCceE
Confidence            99999999999999999754

>COG5663 Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.002  Score=48.36  Aligned_cols=85  Identities=18%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcce-EEEeeh-
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAF-ILFVDL-  123 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~-l~~eDs-  123 (149)
                      ..-.++...|..++++ .+++.+|++....  +....+..-++.  ++..++...+-  .+...+.   .+| +.|||| 
T Consensus        72 l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih--~~~l~i~g~h~--KV~~vrt---h~idlf~ed~~  143 (194)
T COG5663          72 LLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIH--YDHLEIVGLHH--KVEAVRT---HNIDLFFEDSH  143 (194)
T ss_pred             HHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccc--hhhhhhhcccc--cchhhHh---hccCccccccC
Confidence            4556777888888887 5788888876543  123344443432  44433222222  1111111   344 899988 


Q ss_pred             HhHHHHHHHhCCchhhh
Q 032013          124 FCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       124 ~~gi~aa~~ag~~~~~~  140 (149)
                      +|-+++|+.||++|+..
T Consensus       144 ~na~~iAk~~~~~vili  160 (194)
T COG5663         144 DNAGQIAKNAGIPVILI  160 (194)
T ss_pred             chHHHHHHhcCCcEEEe
Confidence            58889999999999874

>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]

Probab=96.67  E-value=0.0039  Score=48.14  Aligned_cols=44  Identities=27%  Similarity=0.414  Sum_probs=36.8

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~   77 (149)
                      +++||+||||+.      +.   ....|.+.++|+.|+.+ +.++++-++...-
T Consensus        13 l~lfdvdgtLt~------~r---~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k   56 (252)
T KOG3189|consen   13 LCLFDVDGTLTP------PR---QKVTPEMLEFLQKLRKK-VTIGFVGGSDLSK   56 (252)
T ss_pred             EEEEecCCcccc------cc---ccCCHHHHHHHHHHhhh-eEEEEeecHHHHH
Confidence            689999999997      33   25889999999999887 8999999887543

>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]

Probab=96.40  E-value=0.014  Score=45.95  Aligned_cols=92  Identities=16%  Similarity=0.117  Sum_probs=72.2

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC-------CCCCcccccccCCChhHHHHHH----hhCCCcc
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-------IHSMFVPMVRLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g-------l~~~f~~~~~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      ..++++..+++..++.|+++.|-|+++... ...++.+.+       +..||+.--+.|..-  ..|-+    ++.++.+
T Consensus       123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~A-qKllfg~s~~gdl~~y~~gyfDt~iG~K~e~--~sy~~I~~~Ig~s~~e  199 (254)
T KOG2630|consen  123 HVYADVLPAIERWSGEGVRVYIYSSGSVAA-QKLLFGYSDAGDLRKYISGYFDTTIGLKVES--QSYKKIGHLIGKSPRE  199 (254)
T ss_pred             cccchhHHHHHHHhhcCceEEEEcCCcHHH-HHHHHcccCcchHHHHhhhhhhccccceehh--HHHHHHHHHhCCChhh
Confidence            688999999999999999999999998775 344444332       345777766777776  44444    5577788


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      =|.+-|-+.=-.||+.||.++.+..|
T Consensus       200 iLfLTd~~~Ea~aa~~aGl~a~l~~r  225 (254)
T KOG2630|consen  200 ILFLTDVPREAAAARKAGLQAGLVSR  225 (254)
T ss_pred             eEEeccChHHHHHHHhcccceeeeec
Confidence            89999999999999999999988776

>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway

Probab=95.91  E-value=0.051  Score=45.65  Aligned_cols=64  Identities=23%  Similarity=0.328  Sum_probs=45.7

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc-CCCCCc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-GIHSMF   92 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~-gl~~~f   92 (149)
                      ..++|-||=|+||++       ++.....-+.+..-|-.|=++|+.++|+|...+.. +.++-+++ |+-+.|
T Consensus       146 ~L~LvTFDgDvTLY~-------DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~-a~kY~~RL~GLL~a~  210 (408)
T PF06437_consen  146 GLKLVTFDGDVTLYE-------DGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPG-AEKYEERLHGLLDAF  210 (408)
T ss_pred             CceEEEEcCCccccc-------CCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCC-hHHHHHHHHHHHHHH
Confidence            689999999999997       44444445566666666667799999999887766 56555554 554433

; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=95.84  E-value=0.13  Score=40.79  Aligned_cols=84  Identities=17%  Similarity=0.099  Sum_probs=52.3

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCCCCccccc-----------------------------
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMV-----------------------------   96 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~~~f~~~~-----------------------------   96 (149)
                      .+-+.+.++++.|+++|+++..+|.++....  ....|+.+|++  |+...                             
T Consensus        81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~--fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft  158 (252)
T PF11019_consen   81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID--FSSSSFPEDGIISFPVFDSALSRAPSFYDGILFT  158 (252)
T ss_pred             EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC--ccccccccCcceecccccCCCCCCceeecCeEEe
Confidence            3456778999999999999999999986541  23445556663  21110                             


Q ss_pred             --ccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHh
Q 032013           97 --RLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYV  133 (149)
Q Consensus        97 --~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~a  133 (149)
                        ..|..-+..++-..+..|+.-|.+.|+.--+.+--+|
T Consensus       159 ~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a  197 (252)
T PF11019_consen  159 GGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKA  197 (252)
T ss_pred             CCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHH
Confidence              0022111122223667777778888998887765544

The function is not known.

>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]

Probab=95.76  E-value=0.012  Score=52.24  Aligned_cols=64  Identities=14%  Similarity=0.143  Sum_probs=47.2

Q ss_pred             cEEEEecCCcccccccccc------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHHcCCCC
Q 032013           23 RLVVFDLDYTLWPFYCECC------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHS   90 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~~gl~~   90 (149)
                      +.|+.|+|||++.+++-.+      ++|    -..|+..+....+++||++..+|++....  +.+.+|+.+.-+.
T Consensus       531 kIVISDIDGTITKSDvLGh~lp~iGkDW----Th~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG  602 (738)
T KOG2116|consen  531 KIVISDIDGTITKSDVLGHVLPMIGKDW----THTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDG  602 (738)
T ss_pred             cEEEecCCCceEhhhhhhhhhhhhcCcc----hhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcC
Confidence            6799999999998644322      333    33699999999999999999999986432  1566776655433

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=95.69  E-value=0.062  Score=38.96  Aligned_cols=97  Identities=11%  Similarity=-0.014  Sum_probs=71.4

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCCh
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p  102 (149)
                      ....-++++|+..+          -++++.+.+.+++|++. +.+.|+|+-.... +...++..|++.+-.   -+..+|
T Consensus        15 d~~~~~v~~tiatg----------Gklf~ev~e~iqeL~d~-V~i~IASgDr~gs-l~~lae~~gi~~~rv---~a~a~~   79 (152)
T COG4087          15 DSKAGKVLYTIATG----------GKLFSEVSETIQELHDM-VDIYIASGDRKGS-LVQLAEFVGIPVERV---FAGADP   79 (152)
T ss_pred             eeecceEEEEEccC----------cEEcHhhHHHHHHHHHh-heEEEecCCcchH-HHHHHHHcCCceeee---ecccCH
Confidence            34566788998863          26999999999999999 9999999998888 688889889754321   223334


Q ss_pred             --hHHHHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013          103 --MCIIFFLFFFSISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       103 --~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag  134 (149)
                        ...|-..++-.-+.|+.+=|-.|.+.|-++|-
T Consensus        80 e~K~~ii~eLkk~~~k~vmVGnGaND~laLr~AD  113 (152)
T COG4087          80 EMKAKIIRELKKRYEKVVMVGNGANDILALREAD  113 (152)
T ss_pred             HHHHHHHHHhcCCCcEEEEecCCcchHHHhhhcc
Confidence              22333333332278888889999999999883

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=95.60  E-value=0.11  Score=46.89  Aligned_cols=101  Identities=12%  Similarity=-0.035  Sum_probs=69.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      -+.+.+-.|++++-.-..  .    -++.|++.+.+++|++.|+++.++||..... +..+.+++|+++++.     .-.
T Consensus       426 ~r~l~va~~~~~lG~i~l--~----D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t-a~~iA~~lGI~~v~a-----~~~  493 (675)
T TIGR01497       426 GTPLVVCEDNRIYGVIYL--K----DIVKGGIKERFAQLRKMGIKTIMITGDNRLT-AAAIAAEAGVDDFIA-----EAT  493 (675)
T ss_pred             CeEEEEEECCEEEEEEEe--c----ccchhHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCEEEc-----CCC
Confidence            455666667887652110  1    2689999999999999999999999999888 899999999976543     233


Q ss_pred             hhHHHHH--HhhCCCcceEEEeehHhHHHHHHHhC
Q 032013          102 IMCIIFF--LFFFSISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       102 p~~~i~~--~~~~~~~~~l~~eDs~~gi~aa~~ag  134 (149)
                      |....-.  ..+-.-......=|..|..-|=++|+
T Consensus       494 PedK~~~v~~lq~~g~~VamvGDG~NDapAL~~Ad  528 (675)
T TIGR01497       494 PEDKIALIRQEQAEGKLVAMTGDGTNDAPALAQAD  528 (675)
T ss_pred             HHHHHHHHHHHHHcCCeEEEECCCcchHHHHHhCC
Confidence            4333222  22212123444458888888877775

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=95.08  E-value=0.1  Score=48.39  Aligned_cols=87  Identities=14%  Similarity=0.032  Sum_probs=62.4

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--------Cccc------------------ccccCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--------MFVP------------------MVRLSCC  101 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--------~f~~------------------~~~~~p~  101 (149)
                      ++.|++.+.++.|++.|+++.++||..... +..+.+++|+..        .++.                  .......
T Consensus       537 plr~~v~e~I~~l~~aGI~v~miTGD~~~t-A~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~  615 (917)
T TIGR01116       537 PPRPEVADAIEKCRTAGIRVIMITGDNKET-AEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE  615 (917)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEecCCCHHH-HHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence            689999999999999999999999998888 899999999853        1111                  1122334


Q ss_pred             hhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCC
Q 032013          102 IMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus       102 p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      |.....+.  .+-.-+.+..+=|..|.+.|.++|+.
T Consensus       616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdV  651 (917)
T TIGR01116       616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADI  651 (917)
T ss_pred             HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCe
Confidence            43332222  33222455556699999999999975

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function

Probab=95.06  E-value=0.11  Score=37.72  Aligned_cols=58  Identities=21%  Similarity=0.258  Sum_probs=43.3

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe--CCCchHHHHHHHHHcCCCC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT--~~~~~~i~~~~l~~~gl~~   90 (149)
                      -.-++|+||.+++.     ...    -.....++++++.+.|.|+.|+|  +.++.. ++.+-..++-.-
T Consensus        44 giAildL~G~~l~l-----~S~----R~~~~~evi~~I~~~G~PviVAtDV~p~P~~-V~Kia~~f~A~l  103 (138)
T PF04312_consen   44 GIAILDLDGELLDL-----KSS----RNMSRSEVIEWISEYGKPVIVATDVSPPPET-VKKIARSFNAVL  103 (138)
T ss_pred             EEEEEecCCcEEEE-----Eee----cCCCHHHHHHHHHHcCCEEEEEecCCCCcHH-HHHHHHHhCCcc
Confidence            35788999999984     121    12366799999999999999999  555566 677777777543

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=94.78  E-value=0.034  Score=46.72  Aligned_cols=51  Identities=22%  Similarity=0.349  Sum_probs=40.2

Q ss_pred             ccEEEEecCCcccccccc-----ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013           22 PRLVVFDLDYTLWPFYCE-----CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~-----~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~   74 (149)
                      -+.+.||+||||++....     ...+|  ..++|.+..=|+.|.+.||.++|.||..
T Consensus        75 ~K~i~FD~dgtlI~t~sg~vf~~~~~dw--~~l~~~vp~Klktl~~~g~~l~iftnq~  130 (422)
T KOG2134|consen   75 SKIIMFDYDGTLIDTKSGKVFPKGSMDW--RILFPEVPSKLKTLYQDGIKLFIFTNQN  130 (422)
T ss_pred             cceEEEecCCceeecCCcceeeccCccc--eeeccccchhhhhhccCCeEEEEEeccc
Confidence            477999999999996331     11233  3678888899999999999999999764

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=94.50  E-value=0.073  Score=48.19  Aligned_cols=94  Identities=22%  Similarity=0.134  Sum_probs=64.0

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChh
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM  103 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~  103 (149)
                      .+++-.||.+.-.-.  -.    -++.|++.+.+++||++|+++.++||-.+.. ++.+.+++|+++++-   ...|+..
T Consensus       519 ~v~va~dg~~~g~i~--~~----D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~-A~~iA~~lGId~v~A---ellPedK  588 (713)
T COG2217         519 VVFVAVDGKLVGVIA--LA----DELRPDAKEAIAALKALGIKVVMLTGDNRRT-AEAIAKELGIDEVRA---ELLPEDK  588 (713)
T ss_pred             EEEEEECCEEEEEEE--Ee----CCCChhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcChHhhec---cCCcHHH
Confidence            688899997665211  01    2588999999999999999999999999998 899999999976543   3355554


Q ss_pred             HHHHHHhhCCCcceEEEe-ehHhHHH
Q 032013          104 CIIFFLFFFSISAFILFV-DLFCFMY  128 (149)
Q Consensus       104 ~~i~~~~~~~~~~~l~~e-Ds~~gi~  128 (149)
                      ..+--+++ .-..-..+. |-.|.--
T Consensus       589 ~~~V~~l~-~~g~~VamVGDGINDAP  613 (713)
T COG2217         589 AEIVRELQ-AEGRKVAMVGDGINDAP  613 (713)
T ss_pred             HHHHHHHH-hcCCEEEEEeCCchhHH
Confidence            43333333 111334443 5444433

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=93.72  E-value=0.11  Score=46.88  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=41.1

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f   92 (149)
                      ++.|++.+.+++||+.|+++.++||-.... +..+.+++|+.++|
T Consensus       441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGI~~v~  484 (673)
T PRK14010        441 VIKDGLVERFRELREMGIETVMCTGDNELT-AATIAKEAGVDRFV  484 (673)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCceEE
Confidence            688999999999999999999999999998 89999999998655

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=93.66  E-value=0.19  Score=39.78  Aligned_cols=78  Identities=12%  Similarity=0.044  Sum_probs=46.0

Q ss_pred             HHCCceEEEE---eCCCchHHHHHHHHHcCCC----CCcccccccCCChhHHHHHH--hhCCC-cceEEEeehHhHHHHH
Q 032013           61 KEKGIHVAVA---SRSPAPDIAKTFLHKLGIH----SMFVPMVRLSCCIMCIIFFL--FFFSI-SAFILFVDLFCFMYAA  130 (149)
Q Consensus        61 k~~Gi~i~Ia---T~~~~~~i~~~~l~~~gl~----~~f~~~~~~~p~p~~~i~~~--~~~~~-~~~l~~eDs~~gi~aa  130 (149)
                      +..++..+++   |+..... +...++..++.    .++..+.....+-.+.-++.  .++++ +++++|-|+.|++..+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ei~~~~~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~  223 (273)
T PRK00192        145 KDREFSEPFLWNGSEAAKER-FEEALKRLGLKVTRGGRFLHLLGGGDKGKAVRWLKELYRRQDGVETIALGDSPNDLPML  223 (273)
T ss_pred             HhcccCCceeecCchHHHHH-HHHHHHHcCCEEEECCeEEEEeCCCCHHHHHHHHHHHHhccCCceEEEEcCChhhHHHH
Confidence            3444444444   3333344 45555655654    33333321122332333333  66889 9999999999999999


Q ss_pred             HHhCCchhh
Q 032013          131 AYVGCDLYV  139 (149)
Q Consensus       131 ~~ag~~~~~  139 (149)
                      ..||..+.+
T Consensus       224 ~~ag~~vam  232 (273)
T PRK00192        224 EAADIAVVV  232 (273)
T ss_pred             HhCCeeEEe
Confidence            999977655

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=93.52  E-value=0.12  Score=46.61  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f   92 (149)
                      +.+.+-.|++++-.-.  -.    -++.|++.+.+++||+.|+++.++||-.... +..+.+++|++++|
T Consensus       426 ~~l~va~~~~~lG~i~--l~----D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGId~v~  488 (679)
T PRK01122        426 TPLVVAEDNRVLGVIY--LK----DIVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFL  488 (679)
T ss_pred             cEEEEEECCeEEEEEE--Ee----ccCchhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcEEE
Confidence            4455555777664210  01    2688999999999999999999999999998 89999999997654

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=93.23  E-value=0.049  Score=40.53  Aligned_cols=18  Identities=22%  Similarity=-0.009  Sum_probs=14.8

Q ss_pred             ccEEEEecCCcccccccc
Q 032013           22 PRLVVFDLDYTLWPFYCE   39 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~   39 (149)
                      +++|+||.||||++++..
T Consensus         1 i~~i~fDktGTLt~~~~~   18 (215)
T PF00702_consen    1 IDAICFDKTGTLTQGKMS   18 (215)
T ss_dssp             ESEEEEECCTTTBESHHE
T ss_pred             CeEEEEecCCCcccCeEE
Confidence            478999999999986443

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=93.20  E-value=0.19  Score=38.18  Aligned_cols=69  Identities=13%  Similarity=0.022  Sum_probs=43.9

Q ss_pred             EeCCCchHHHHHHHHHcCCC----CCccccc-ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           70 ASRSPAPDIAKTFLHKLGIH----SMFVPMV-RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        70 aT~~~~~~i~~~~l~~~gl~----~~f~~~~-~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .++..... +...++..++.    .+|..+. ....++.+.-++.  .+++++++++|-||.|++.....||--+.|
T Consensus       145 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~  220 (221)
T TIGR02463       145 DSDSRMPR-FTALLADLGLAIVQGNRFSHVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI  220 (221)
T ss_pred             CchhHHHH-HHHHHHHcCCeEEecCCeeEEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence            34444445 45666666665    3443332 2223333455554  667789999999999999999999976543

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3

Probab=92.59  E-value=0.16  Score=43.58  Aligned_cols=55  Identities=16%  Similarity=0.132  Sum_probs=39.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---------CCCCCcccccccCCCh
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---------GIHSMFVPMVRLSCCI  102 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---------gl~~~f~~~~~~~p~p  102 (149)
                      +..-|.+..+|++|++.|.++.++||++... +...++.+         .+.++||.+....-+|
T Consensus       182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-t~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP  245 (448)
T PF05761_consen  182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDY-TNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKP  245 (448)
T ss_dssp             EE--CHHHHHHHHHHCCT-EEEEE-SS-HHH-HHHHHHHHCGCCSSTTT-GGGCECEEEES--CC
T ss_pred             ccCCchHHHHHHHHHhcCceEEEecCCCCch-hhhhhhhccCCCCCCCCChhhheeEEEEcCCCC
Confidence            4455788899999999999999999999988 78888765         3677899886665555

1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....

>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]

Probab=92.56  E-value=0.12  Score=44.28  Aligned_cols=53  Identities=13%  Similarity=0.050  Sum_probs=39.5

Q ss_pred             CCccEEEEecCCcccccccccc------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCch
Q 032013           20 NLPRLVVFDLDYTLWPFYCECC------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~   76 (149)
                      ...+.|++|+|||++.++.-.+      ++|    -.-|+..+......+||++.-.|+++..
T Consensus       373 ~n~kiVVsDiDGTITkSD~~Ghv~~miGkdw----th~gVAkLYtdI~rNGYkI~YltsR~~G  431 (580)
T COG5083         373 NNKKIVVSDIDGTITKSDALGHVKQMIGKDW----THNGVAKLYTDIDRNGYKIKYLTSRSYG  431 (580)
T ss_pred             CCCcEEEEecCCcEEehhhHHHHHHHhccch----hhcchhhhhhhhccCceEEEEEeccccc
Confidence            3457899999999998532211      222    2358888888888999999999998754

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=91.74  E-value=0.095  Score=38.45  Aligned_cols=13  Identities=46%  Similarity=0.452  Sum_probs=11.4

Q ss_pred             EEEecCCcccccc
Q 032013           25 VVFDLDYTLWPFY   37 (149)
Q Consensus        25 vifDlDGTLld~~   37 (149)
                      ++||+||||++.+
T Consensus         1 v~fD~DGTL~~~~   13 (192)
T PF12710_consen    1 VIFDFDGTLTDSD   13 (192)
T ss_dssp             EEEESBTTTBSSH
T ss_pred             eEEecCcCeecCC
Confidence            6899999999864

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=91.71  E-value=0.6  Score=35.27  Aligned_cols=73  Identities=8%  Similarity=-0.038  Sum_probs=46.6

Q ss_pred             eEEEEeCCCchHHHHHHHHHcCCCCC-------cccccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCc
Q 032013           66 HVAVASRSPAPDIAKTFLHKLGIHSM-------FVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCD  136 (149)
Q Consensus        66 ~i~IaT~~~~~~i~~~~l~~~gl~~~-------f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~  136 (149)
                      ...+.+...... +...++.++....       ++......++..+.-++.  .+++++++++|-|++|++..++.||.-
T Consensus       109 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~  187 (225)
T TIGR01482       109 LVKMRYGIDVDT-VREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFG  187 (225)
T ss_pred             eEEEeecCCHHH-HHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCce
Confidence            345555555555 5777777765311       111112234444455554  567779999999999999999999976


Q ss_pred             hhh
Q 032013          137 LYV  139 (149)
Q Consensus       137 ~~~  139 (149)
                      +.+
T Consensus       188 vam  190 (225)
T TIGR01482       188 VAV  190 (225)
T ss_pred             EEc
Confidence            544

catalyze the same reaction as SPP.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=91.60  E-value=0.34  Score=44.14  Aligned_cols=42  Identities=19%  Similarity=0.232  Sum_probs=39.6

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      ++.|++.+.+++|++.|+++.++||-.... +..+.+++|+..
T Consensus       442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~~  483 (755)
T TIGR01647       442 PPRHDTKETIERARHLGVEVKMVTGDHLAI-AKETARRLGLGT  483 (755)
T ss_pred             CChhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCC
Confidence            688999999999999999999999999998 899999999964

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>PLN02499 glycerol-3-phosphate acyltransferase

Probab=91.38  E-value=0.45  Score=41.42  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             HHHHHHHHCCceEEEEeCCCchHHHHHHHHH-cCCCCC
Q 032013           55 GILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM   91 (149)
Q Consensus        55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~gl~~~   91 (149)
                      +.++..++.| +.+|+|.+++-. ++.+++. +|.+..
T Consensus       100 e~~~~~~~~g-~~vVVTAsPrvm-VEpFake~LG~D~V  135 (498)
T PLN02499        100 EAWKVFSSCD-KRVVVTRMPRVM-VERFAKEHLRADEV  135 (498)
T ss_pred             HHHHHHHcCC-eEEEEeCCHHHH-HHHHHHHhcCCceE
Confidence            4566777788 999999999888 7999998 787643

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=91.20  E-value=2.2  Score=34.26  Aligned_cols=81  Identities=14%  Similarity=0.010  Sum_probs=50.1

Q ss_pred             cHHHHHHHHHHCCceEEEEeCCCc------------hHHHHHHHHHcCCCCCcccccccCCChhHHHHHH----hhCCCc
Q 032013           52 HAKGILEALKEKGIHVAVASRSPA------------PDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL----FFFSIS  115 (149)
Q Consensus        52 g~~e~L~~Lk~~Gi~i~IaT~~~~------------~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~----~~~~~~  115 (149)
                      ...+++..+++.  .-.|+||..+            -. ....+++.+=...   ....||+|  .||-+    ++...+
T Consensus       137 ~l~~a~~~i~~g--~~fI~tNpD~~~p~~~g~~pgaGa-i~~~~~~~tg~~~---~~~GKP~~--~i~~~al~~~~~~~~  208 (269)
T COG0647         137 KLAEALLAIAAG--APFIATNPDLTVPTERGLRPGAGA-IAALLEQATGREP---TVIGKPSP--AIYEAALEKLGLDRS  208 (269)
T ss_pred             HHHHHHHHHHcC--CcEEEeCCCccccCCCCCccCcHH-HHHHHHHhhCCcc---cccCCCCH--HHHHHHHHHhCCCcc
Confidence            345667666654  5667998753            22 2334444332222   34668888  55544    334446


Q ss_pred             ceEEEe-ehHhHHHHHHHhCCchhhh
Q 032013          116 AFILFV-DLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       116 ~~l~~e-Ds~~gi~aa~~ag~~~~~~  140 (149)
                      +++.+= +....|.+|+++||+++.+
T Consensus       209 ~~~mVGD~~~TDI~~a~~~G~~t~LV  234 (269)
T COG0647         209 EVLMVGDRLDTDILGAKAAGLDTLLV  234 (269)
T ss_pred             cEEEEcCCchhhHHHHHHcCCCEEEE
Confidence            776665 5678999999999998764

>COG4850 Uncharacterized conserved protein [Function unknown]

Probab=91.17  E-value=0.53  Score=38.96  Aligned_cols=54  Identities=20%  Similarity=0.073  Sum_probs=42.4

Q ss_pred             EEEEecCCcccccccccc---------ccCCCCccCccHHHHHHHHHHCC-ceEEEEeCCCchH
Q 032013           24 LVVFDLDYTLWPFYCECC---------YEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD   77 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~---------~~~~~~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~~   77 (149)
                      .++.|+|.|+...++...         -......++||+-.+.+.|.+.| .++..+||++...
T Consensus       163 giISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~  226 (373)
T COG4850         163 GIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQL  226 (373)
T ss_pred             eeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHh
Confidence            389999999998766521         11222478999999999999998 8999999998653

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=91.10  E-value=0.33  Score=45.55  Aligned_cols=41  Identities=17%  Similarity=0.177  Sum_probs=38.6

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.+.+++++++|+++.++||++... +..+.+++|+.
T Consensus       568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~t-a~~ia~~~gi~  608 (997)
T TIGR01106       568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGII  608 (997)
T ss_pred             CChHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999998 89999999984

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=89.93  E-value=1  Score=36.81  Aligned_cols=102  Identities=18%  Similarity=0.169  Sum_probs=65.7

Q ss_pred             CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH-------------HHHHHHHH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-------------IAKTFLHK   85 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~-------------i~~~~l~~   85 (149)
                      ++.+++|++++|--+-               ++....++++|++-+..+ ++||+..-.             ++..+-..
T Consensus       151 d~~VgAVvvg~D~hfs---------------y~KL~kA~~yLqnP~clf-latn~D~~~p~~~~~~ipG~G~~v~av~~~  214 (306)
T KOG2882|consen  151 DPDVGAVVVGYDEHFS---------------YPKLMKALNYLQNPGCLF-LATNRDATTPPTPGVEIPGAGSFVAAVKFA  214 (306)
T ss_pred             CCCCCEEEEecccccC---------------HHHHHHHHHHhCCCCcEE-EeccCccccCCCCCeeccCCccHHHHHHHH
Confidence            3446777777774333               356678999999888755 789886411             01222222


Q ss_pred             cCCCCCcccccccCCChhHHHHHH--hhCCCcceEEEeehH-hHHHHHHHhCCchhhh
Q 032013           86 LGIHSMFVPMVRLSCCIMCIIFFL--FFFSISAFILFVDLF-CFMYAAAYVGCDLYVY  140 (149)
Q Consensus        86 ~gl~~~f~~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~-~gi~aa~~ag~~~~~~  140 (149)
                      .|-    +.....||+|...-++.  .+.+|++|+.+=|+. ..|+=|++.|++|++.
T Consensus       215 t~R----~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLv  268 (306)
T KOG2882|consen  215 TGR----QPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLV  268 (306)
T ss_pred             hcC----CCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEE
Confidence            221    12346699984444444  446679999998876 4899999999998764

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=88.64  E-value=1  Score=34.13  Aligned_cols=39  Identities=8%  Similarity=-0.193  Sum_probs=31.0

Q ss_pred             ChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          101 CIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       101 ~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      ++.+.-++.  .+++++++++|-|+.|++..+..||..+.+
T Consensus       158 Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam  198 (230)
T PRK01158        158 KGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAV  198 (230)
T ss_pred             hHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEe
Confidence            344455555  567779999999999999999999987655

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=88.60  E-value=0.39  Score=39.16  Aligned_cols=46  Identities=13%  Similarity=-0.088  Sum_probs=34.6

Q ss_pred             cccCCChhHHHHHHhhC---------------CCcceEEEeehH-hHHHHHHHhCCchhhhh
Q 032013           96 VRLSCCIMCIIFFLFFF---------------SISAFILFVDLF-CFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        96 ~~~~p~p~~~i~~~~~~---------------~~~~~l~~eDs~-~gi~aa~~ag~~~~~~~  141 (149)
                      ...||+|..+-++...+               ++++++.+-|++ .+|..|+++|++++.++
T Consensus       230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~  291 (321)
T TIGR01456       230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVK  291 (321)
T ss_pred             EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEec
Confidence            45799995555543222               336899999998 99999999999998664

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=88.58  E-value=0.74  Score=42.88  Aligned_cols=41  Identities=22%  Similarity=0.281  Sum_probs=38.8

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.+.+++|++.|+++.++||-.... +..+.+++|+.
T Consensus       550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~  590 (902)
T PRK10517        550 PPKETTAPALKALKASGVTVKILTGDSELV-AAKVCHEVGLD  590 (902)
T ss_pred             cchhhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999888 89999999995

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=88.50  E-value=0.85  Score=42.59  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=38.9

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.++++.|++.|+++.++||-.... +..+.+++|+.
T Consensus       579 plr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~iA~~~GI~  619 (941)
T TIGR01517       579 PLRPGVREAVQECQRAGITVRMVTGDNIDT-AKAIARNCGIL  619 (941)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCC
Confidence            688999999999999999999999999998 89999999985

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=87.98  E-value=0.78  Score=42.71  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.+++++|++.|+++.++||-.... +..+.+++|+.
T Consensus       550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~aIA~~lGI~  590 (903)
T PRK15122        550 PPKESAAPAIAALRENGVAVKVLTGDNPIV-TAKICREVGLE  590 (903)
T ss_pred             ccHHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999888 89999999995

>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []

Probab=87.91  E-value=3  Score=30.71  Aligned_cols=87  Identities=8%  Similarity=-0.026  Sum_probs=54.1

Q ss_pred             HHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHHc
Q 032013            8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKL   86 (149)
Q Consensus         8 ~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~~   86 (149)
                      ++++........+.-..|++|..|-.+++              ++..+.|+.+...|. .++++-|++... ...+.+..
T Consensus        54 ~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGG~~G~-~~~~~~~a  118 (155)
T PF02590_consen   54 EKEGERILKKIPPNDYVILLDERGKQLSS--------------EEFAKKLERWMNQGKSDIVFIIGGADGL-SEEVRKRA  118 (155)
T ss_dssp             HHHHHHHHCTSHTTSEEEEE-TTSEE--H--------------HHHHHHHHHHHHTTS-EEEEEE-BTTB---HHHHHH-
T ss_pred             HHHHHHHHhhccCCCEEEEEcCCCccCCh--------------HHHHHHHHHHHhcCCceEEEEEecCCCC-CHHHHhhc
Confidence            34455554444445567999999999983              577889999999988 899999988775 56666665


Q ss_pred             CCCCCcccccccCCChhHHHHHHhh
Q 032013           87 GIHSMFVPMVRLSCCIMCIIFFLFF  111 (149)
Q Consensus        87 gl~~~f~~~~~~~p~p~~~i~~~~~  111 (149)
                      +.  .++.....-||.++.+.+.++
T Consensus       119 ~~--~lSLS~mTfpH~larlvL~EQ  141 (155)
T PF02590_consen  119 DE--KLSLSKMTFPHQLARLVLLEQ  141 (155)
T ss_dssp             SE--EEES-SS---HHHHHHHHHHH
T ss_pred             Cc--eEEEecCCCcHHHHHHHHHHH
Confidence            42  244455667888888887643

; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=87.81  E-value=0.92  Score=42.96  Aligned_cols=41  Identities=22%  Similarity=0.283  Sum_probs=38.8

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.++++.|++.|+++.++||..... +..+.+++|+.
T Consensus       646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~t-A~~iA~~~Gi~  686 (1053)
T TIGR01523       646 PPRNESAGAVEKCHQAGINVHMLTGDFPET-AKAIAQEVGII  686 (1053)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999998 89999999995

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=87.52  E-value=1  Score=42.62  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=38.6

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.++++.|++.|+++.++||..... +..+.+++|+.
T Consensus       656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~T-A~~iA~~~gii  696 (1054)
T TIGR01657       656 PLKPDTKEVIKELKRASIRTVMITGDNPLT-AVHVARECGIV  696 (1054)
T ss_pred             CCCccHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999998 89999999984

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=87.48  E-value=2.8  Score=38.88  Aligned_cols=41  Identities=22%  Similarity=0.231  Sum_probs=38.7

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.+.+++|++.|+++.++||-.... +..+.+++|+.
T Consensus       515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~t-A~aIA~~lGI~  555 (867)
T TIGR01524       515 PPKESTKEAIAALFKNGINVKVLTGDNEIV-TARICQEVGID  555 (867)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999998888 89999999996

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=87.48  E-value=4  Score=38.06  Aligned_cols=80  Identities=15%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      -..+.+=+||+|.--...  .    -.+.|++..+++.|++.|+++++.||-.... ++...+++|++..+.   ..+|+
T Consensus       703 ~tvv~v~vn~~l~gv~~l--~----D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a-A~svA~~VGi~~V~a---ev~P~  772 (951)
T KOG0207|consen  703 QTVVYVAVNGQLVGVFAL--E----DQVRPDAALAVAELKSMGIKVVMLTGDNDAA-ARSVAQQVGIDNVYA---EVLPE  772 (951)
T ss_pred             ceEEEEEECCEEEEEEEe--c----cccchhHHHHHHHHHhcCceEEEEcCCCHHH-HHHHHHhhCcceEEe---ccCch
Confidence            456888999999873211  1    2588999999999999999999999999998 899999999554322   34666


Q ss_pred             hhHHHHHHhh
Q 032013          102 IMCIIFFLFF  111 (149)
Q Consensus       102 p~~~i~~~~~  111 (149)
                      -...+--.++
T Consensus       773 ~K~~~Ik~lq  782 (951)
T KOG0207|consen  773 QKAEKIKEIQ  782 (951)
T ss_pred             hhHHHHHHHH
Confidence            5555544433

>PRK00103 rRNA large subunit methyltransferase; Provisional

Probab=87.41  E-value=5.8  Score=29.29  Aligned_cols=88  Identities=10%  Similarity=0.003  Sum_probs=58.7

Q ss_pred             hHHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHH
Q 032013            7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHK   85 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~   85 (149)
                      +++++........+.-..|++|-.|..+++              +...+.|+.....|. .+.++-|++... .+.+.++
T Consensus        53 ~~~E~~~il~~l~~~~~~i~LDe~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGGa~G~-~~~v~~~  117 (157)
T PRK00103         53 KAKEGERILAALPKGARVIALDERGKQLSS--------------EEFAQELERWRDDGRSDVAFVIGGADGL-SPAVKKR  117 (157)
T ss_pred             HHHHHHHHHhhCCCCCEEEEEcCCCCcCCH--------------HHHHHHHHHHHhcCCccEEEEEcCcccc-CHHHHHh
Confidence            344554443333333357999999999973              466788888888886 799999887654 4555555


Q ss_pred             cCCCCCcccccccCCChhHHHHHHhh
Q 032013           86 LGIHSMFVPMVRLSCCIMCIIFFLFF  111 (149)
Q Consensus        86 ~gl~~~f~~~~~~~p~p~~~i~~~~~  111 (149)
                      .+.  .+......=||.++.+.+.++
T Consensus       118 a~~--~lSLS~mTfpH~larlvL~EQ  141 (157)
T PRK00103        118 ADQ--SLSLSKLTLPHQLVRVLLAEQ  141 (157)
T ss_pred             cCc--eEEeccCCCcHHHHHHHHHHH
Confidence            443  244445667899988887644

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=87.23  E-value=3.9  Score=35.18  Aligned_cols=100  Identities=19%  Similarity=0.078  Sum_probs=64.1

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      .+.+.+=.|++++..-.      -..++.|++.+.+++|++.|+++.++||..... +....+++|+.      ....|.
T Consensus       327 ~~~~~~a~~~~~~g~i~------l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~-a~~ia~~lgi~------~~~~p~  393 (499)
T TIGR01494       327 LRVLAVASKETLLGLLG------LEDPLRDDAKETISELREAGIRVIMLTGDNVLT-AKAIAKELGIF------ARVTPE  393 (499)
T ss_pred             CEEEEEEECCeEEEEEE------ecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCce------eccCHH
Confidence            45555556776664211      112688999999999999999999999999988 89999999871      112333


Q ss_pred             hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013          102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag  134 (149)
                      --..+--...-.-......=|-.|..-|-++|+
T Consensus       394 ~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~Ad  426 (499)
T TIGR01494       394 EKAALVEALQKKGRVVAMTGDGVNDAPALKKAD  426 (499)
T ss_pred             HHHHHHHHHHHCCCEEEEECCChhhHHHHHhCC
Confidence            222222222211133444448888887777764

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>COG1576 Uncharacterized conserved protein [Function unknown]

Probab=87.13  E-value=5.9  Score=29.34  Aligned_cols=88  Identities=10%  Similarity=0.033  Sum_probs=61.4

Q ss_pred             hHHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013            7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~   86 (149)
                      +++++..+.....+.-.+|.+|+.|.-+++              +...+.|+.++..|-.+.++=|++... ...+.++.
T Consensus        53 ~~~E~~~il~~i~~~~~vi~Ld~~Gk~~sS--------------e~fA~~l~~~~~~G~~i~f~IGG~~Gl-~~~~~~~a  117 (155)
T COG1576          53 KKKEGEAILAAIPKGSYVVLLDIRGKALSS--------------EEFADFLERLRDDGRDISFLIGGADGL-SEAVKARA  117 (155)
T ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCcCCh--------------HHHHHHHHHHHhcCCeEEEEEeCcccC-CHHHHHHH
Confidence            445566665555555688999999999973              467789999999998888888887654 45555544


Q ss_pred             CCCCCcccccccCCChhHHHHHHhh
Q 032013           87 GIHSMFVPMVRLSCCIMCIIFFLFF  111 (149)
Q Consensus        87 gl~~~f~~~~~~~p~p~~~i~~~~~  111 (149)
                      ...  ++.....=||++..+.+..+
T Consensus       118 ~~~--~sls~lT~PHql~rlvL~EQ  140 (155)
T COG1576         118 DQV--LSLSKLTLPHQLVRLVLAEQ  140 (155)
T ss_pred             hhh--eecccccchhHHHHHHHHHH
Confidence            432  33344557888887777643

>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=86.74  E-value=1.7  Score=32.53  Aligned_cols=111  Identities=21%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHC-C-ceEEEEeCCCc-------hHHHHHHHHHcCCCCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-G-IHVAVASRSPA-------PDIAKTFLHKLGIHSM   91 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~-G-i~i~IaT~~~~-------~~i~~~~l~~~gl~~~   91 (149)
                      .+|++++|-|++++-      +..  ..+.|....-+++++.. | ..++++||+.-       .+.+..+-++.|++-.
T Consensus        42 ~ikavVlDKDNcit~------P~~--~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVl  113 (190)
T KOG2961|consen   42 GIKAVVLDKDNCITA------PYS--LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVL  113 (190)
T ss_pred             CceEEEEcCCCeeeC------Ccc--cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceE
Confidence            589999999999996      222  35777777888888875 3 78999998742       2323444445666421


Q ss_pred             cccccccCCChhHHHHHHh-----hCCCcceEEEeeh-HhHHHHHHHhCCchhhhh
Q 032013           92 FVPMVRLSCCIMCIIFFLF-----FFSISAFILFVDL-FCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        92 f~~~~~~~p~p~~~i~~~~-----~~~~~~~l~~eDs-~~gi~aa~~ag~~~~~~~  141 (149)
                        .....||.=-.+++=+.     ..++++-+++-|- ...|.-|+.-|.=.+...
T Consensus       114 --RHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~  167 (190)
T KOG2961|consen  114 --RHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTE  167 (190)
T ss_pred             --eecccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEec
Confidence              11122333322444331     1455666666664 457777777775444433

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=86.73  E-value=0.27  Score=39.36  Aligned_cols=103  Identities=15%  Similarity=0.008  Sum_probs=63.5

Q ss_pred             CCccEEEEecCCccccccc--cc--c---------c---cCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH
Q 032013           20 NLPRLVVFDLDYTLWPFYC--EC--C---------Y---EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~--~~--~---------~---~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l   83 (149)
                      .+.+++++|+|+||.....  .+  .         +   ..-.+.-.|++.++|+...+. +.+++-|++.... +..++
T Consensus        87 ~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y-a~~v~  164 (262)
T KOG1605|consen   87 VGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVY-ADPLL  164 (262)
T ss_pred             CCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH-HHHHH
Confidence            3458999999999988652  11  0         0   011134569999999998887 8999999998887 78888


Q ss_pred             HHcCC-CCCcccccccCC--ChhHHHHHH----hhCCCcceEEEeehHh
Q 032013           84 HKLGI-HSMFVPMVRLSC--CIMCIIFFL----FFFSISAFILFVDLFC  125 (149)
Q Consensus        84 ~~~gl-~~~f~~~~~~~p--~p~~~i~~~----~~~~~~~~l~~eDs~~  125 (149)
                      ..+.- ...+... -+..  ..-.-.|.+    .+-+.++.++++|||.
T Consensus       165 D~LD~~~~i~~~R-lyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~  212 (262)
T KOG1605|consen  165 DILDPDRKIISHR-LYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQ  212 (262)
T ss_pred             HHccCCCCeeeee-ecccceEeECCcEEEEcceeccCcccEEEEcCChH
Confidence            87764 2222211 1100  000011111    3345578888888875

>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3

Probab=86.57  E-value=4.6  Score=32.45  Aligned_cols=103  Identities=22%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             ccEEEEecCCcccccccc--cc-----------ccCCCCccCc----cHHHHHHHHHHC------CceEEEEeCCCchH-
Q 032013           22 PRLVVFDLDYTLWPFYCE--CC-----------YEDEIPYLYP----HAKGILEALKEK------GIHVAVASRSPAPD-   77 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~--~~-----------~~~~~~~~~p----g~~e~L~~Lk~~------Gi~i~IaT~~~~~~-   77 (149)
                      +| |.||-|++|.+-+-.  +.           ......++.+    .....|.+++++      -++++++|.+.... 
T Consensus       122 lR-IAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah  200 (264)
T PF06189_consen  122 LR-IAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAH  200 (264)
T ss_pred             eE-EEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchh
Confidence            44 999999999983111  10           1111122333    344555556553      47899999776543 


Q ss_pred             -HHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHH
Q 032013           78 -IAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAA  131 (149)
Q Consensus        78 -i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~  131 (149)
                       .+..-|+..|+.  ++...-...-|...+.-+.    ..=|.|+|...=+.+|.
T Consensus       201 ~RvI~TLr~Wgv~--vDEafFLgG~~K~~vL~~~----~phIFFDDQ~~H~~~a~  249 (264)
T PF06189_consen  201 ERVIRTLRSWGVR--VDEAFFLGGLPKGPVLKAF----RPHIFFDDQDGHLESAS  249 (264)
T ss_pred             HHHHHHHHHcCCc--HhHHHHhCCCchhHHHHhh----CCCEeecCchhhhhHhh
Confidence             144556666763  4433211222211222222    24489999999999887

1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=86.02  E-value=1.1  Score=33.80  Aligned_cols=73  Identities=8%  Similarity=-0.058  Sum_probs=45.9

Q ss_pred             eEEEEeCCCchHHHHHHHHHcCCCCCccc--c---cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013           66 HVAVASRSPAPDIAKTFLHKLGIHSMFVP--M---VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus        66 ~i~IaT~~~~~~i~~~~l~~~gl~~~f~~--~---~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                      ..++.++..... +...++..++..+...  .   .....+..+.-++.  .+++++++++|-||.|++.....||.-+.
T Consensus       109 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~va  187 (215)
T TIGR01487       109 LVIMREGKDVDE-VREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVA  187 (215)
T ss_pred             EEEecCCccHHH-HHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEE
Confidence            344455655566 5777777766443221  1   11122333344444  55667889999999999999999997765


Q ss_pred             h
Q 032013          139 V  139 (149)
Q Consensus       139 ~  139 (149)
                      +
T Consensus       188 m  188 (215)
T TIGR01487       188 V  188 (215)
T ss_pred             c
Confidence            5

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=85.86  E-value=5.5  Score=29.44  Aligned_cols=83  Identities=11%  Similarity=0.056  Sum_probs=50.2

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHH-hhCCCcceEEEeehHhH
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFL-FFFSISAFILFVDLFCF  126 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~-~~~~~~~~l~~eDs~~g  126 (149)
                      .+.|.+.++++++++.|+.+.+.||+..... ...+...|..+++.. .. +..+  ..|.. .+.+....   |+...+
T Consensus        74 ll~~~l~~li~~~~~~g~~v~i~TNg~~~~~-l~~l~~~g~~~~v~i-sl-~~~~--~~~~~~~g~~~~~~---~~~~~~  145 (191)
T TIGR02495        74 TLQAGLPDFLRKVRELGFEVKLDTNGSNPRV-LEELLEEGLVDYVAM-DV-KAPP--EKYPELYGLEKNGS---NNILKS  145 (191)
T ss_pred             cCcHhHHHHHHHHHHCCCeEEEEeCCCCHHH-HHHHHhcCCCcEEEE-ec-cCCh--HHHHHHHCCCCchH---HHHHHH
Confidence            3556788999999999999999999976552 333344453232211 11 2222  33433 23322111   588888


Q ss_pred             HHHHHHhCCchh
Q 032013          127 MYAAAYVGCDLY  138 (149)
Q Consensus       127 i~aa~~ag~~~~  138 (149)
                      +.-.++.|+++.
T Consensus       146 i~~l~~~gi~~~  157 (191)
T TIGR02495       146 LEILLRSGIPFE  157 (191)
T ss_pred             HHHHHHcCCCEE
Confidence            888888887653

This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.

>PRK13762 tRNA-modifying enzyme; Provisional

Probab=85.80  E-value=2.4  Score=34.82  Aligned_cols=83  Identities=11%  Similarity=0.067  Sum_probs=46.4

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHH
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFM  127 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi  127 (149)
                      .+.|.+.++++.++++|+.+.+.||+...+ ....+ ..+++....  ..-.++|  ..|-+..-+. .--.||.....+
T Consensus       142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~~e-~l~~L-~~~~d~i~V--SLda~~~--e~~~~i~~~~-~~~~~~~vl~~L  214 (322)
T PRK13762        142 TLYPYLPELIEEFHKRGFTTFLVTNGTRPD-VLEKL-EEEPTQLYV--SLDAPDE--ETYKKINRPV-IPDAWERILETL  214 (322)
T ss_pred             cchhhHHHHHHHHHHcCCCEEEECCCCCHH-HHHHH-HhcCCEEEE--EccCCCH--HHHHHHhCCC-CCCcHHHHHHHH
Confidence            356789999999999999999999997765 33333 224332211  1223334  4444432110 011344555555


Q ss_pred             HHHHHhCCch
Q 032013          128 YAAAYVGCDL  137 (149)
Q Consensus       128 ~aa~~ag~~~  137 (149)
                      ..+.+.|.++
T Consensus       215 ~~l~~~~~~~  224 (322)
T PRK13762        215 ELLPSKKTRT  224 (322)
T ss_pred             HHHHhCCCCE
Confidence            5555555544

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=84.58  E-value=1.9  Score=40.34  Aligned_cols=43  Identities=23%  Similarity=0.258  Sum_probs=39.7

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      ++.+++++.++.|++.|+++.++||-.... +..+.+++|+..-
T Consensus       547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~T-A~aIa~~~Gi~~~  589 (917)
T COG0474         547 PPREDVKEAIEELREAGIKVWMITGDHVET-AIAIAKECGIEAE  589 (917)
T ss_pred             CCCccHHHHHHHHHHCCCcEEEECCCCHHH-HHHHHHHcCCCCC
Confidence            688999999999999999999999999888 8999999997553

>KOG3128 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.46  E-value=1.4  Score=35.50  Aligned_cols=40  Identities=15%  Similarity=0.036  Sum_probs=32.9

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~   86 (149)
                      ...+.+|..++++.|+.+++|+.|.|.+--.. ++.++++.
T Consensus       136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdi-iEev~~q~  175 (298)
T KOG3128|consen  136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDI-IEEVTRQK  175 (298)
T ss_pred             hHHHHHHHHHHHHHHHhCCCceEEEecchHHH-HHHHHHHH
Confidence            35677889999999999999999999987776 56666554

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=84.02  E-value=1.8  Score=38.18  Aligned_cols=55  Identities=13%  Similarity=0.189  Sum_probs=45.5

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHH
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFF  108 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~  108 (149)
                      .+.||.+|-+.+||+.|++.+.+||-.+-. +..+.++.|++++.-     ...|...+-+
T Consensus       447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~T-Aa~IA~EAGVDdfiA-----eatPEdK~~~  501 (681)
T COG2216         447 IVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFIA-----EATPEDKLAL  501 (681)
T ss_pred             hcchhHHHHHHHHHhcCCeEEEEeCCCHHH-HHHHHHHhCchhhhh-----cCChHHHHHH
Confidence            588999999999999999999999999888 899999999987542     3445445544

>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins

Probab=82.42  E-value=9.4  Score=31.21  Aligned_cols=79  Identities=16%  Similarity=0.097  Sum_probs=46.6

Q ss_pred             HHHHHCCceEEEEeCCCc-hHHHHHHHHH-cCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013           58 EALKEKGIHVAVASRSPA-PDIAKTFLHK-LGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus        58 ~~Lk~~Gi~i~IaT~~~~-~~i~~~~l~~-~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      +.+++.|..+.|.||+-. .. +...|+. ++-.........-.+.|-..+   ++ -.+..+|=+||.+=+.-|.++|+
T Consensus       176 ~~~~~~~~~~~vttSRRTp~~-~~~~L~~~~~~~~~~~~~~~~~~nPy~~~---La-~ad~i~VT~DSvSMvsEA~~tG~  250 (311)
T PF06258_consen  176 ALAAAYGGSLLVTTSRRTPPE-AEAALRELLKDNPGVYIWDGTGENPYLGF---LA-AADAIVVTEDSVSMVSEAAATGK  250 (311)
T ss_pred             HHHHhCCCeEEEEcCCCCcHH-HHHHHHHhhcCCCceEEecCCCCCcHHHH---HH-hCCEEEEcCccHHHHHHHHHcCC
Confidence            444556767888877643 44 4555544 322121111133345552221   11 22455788899999999999999


Q ss_pred             chhhhh
Q 032013          136 DLYVYK  141 (149)
Q Consensus       136 ~~~~~~  141 (149)
                      +|+|+.
T Consensus       251 pV~v~~  256 (311)
T PF06258_consen  251 PVYVLP  256 (311)
T ss_pred             CEEEec
Confidence            999863

The function of this family is unknown.

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

Probab=82.41  E-value=2.6  Score=39.95  Aligned_cols=52  Identities=25%  Similarity=0.328  Sum_probs=39.9

Q ss_pred             cEEE--EecCCccccccccccccCCCCccCccHHHHHHHHH----HCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           23 RLVV--FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALK----EKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        23 k~vi--fDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk----~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++++  .|+|+| .+             ..+.++++++.++    +..+-++++||++..+ +..+++..++.
T Consensus       771 ~~~via~D~d~~-~~-------------~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~-~~~~l~~~~lp  828 (1050)
T TIGR02468       771 RLFVIAVDCYDD-KD-------------LLQIIKNIFEAVRKERMEGSSGFILSTSMTISE-IQSFLKSGGLN  828 (1050)
T ss_pred             eEEEEEeccCCC-CC-------------hHHHHHHHHHHHhccccCCceEEEEEcCCCHHH-HHHHHHhCCCC
Confidence            4455  799999 32             2245667788886    3348899999999999 79999999986

Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.

>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]

Probab=80.96  E-value=3.4  Score=38.34  Aligned_cols=43  Identities=21%  Similarity=0.316  Sum_probs=39.5

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      ++.|++.+.++.+++.|+++..+||-.... +..+.++.|+...
T Consensus       584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~T-A~AI~r~iGi~~~  626 (972)
T KOG0202|consen  584 PPRPEVADAIELCRQAGIRVIMITGDNKET-AEAIAREIGIFSE  626 (972)
T ss_pred             CCchhHHHHHHHHHHcCCEEEEEcCCCHHH-HHHHHHHhCCCcC
Confidence            688999999999999999999999999988 8999999997543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
1u7o_A	164	Magnesium Dependent Phosphatase 1 (Mdp-1) Length =		6e-06
2wm8_A	187	Crystal Structure Of Human Magnesium-Dependent Phos		9e-06

>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1) Length = 164

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L  L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62
Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          + VA ASR+     A   L    +   F+
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFI 91

>pdb|2WM8|A Chain A, Crystal Structure Of Human Magnesium-Dependent Phosphatase 1 Of The Haloacid Dehalogenase Superfamily (Mgc5987) Length = 187

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 21  LPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKGI 65
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L+ L+  G+
Sbjct: 26  LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGV 85
Query: 66  HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             A ASR+   + A   L    +   FV
Sbjct: 86  PGAAASRTSEIEGANQLLELFDLFRYFV 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	2e-20
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	2e-06
1te2_A	226	Putative phosphatase; structural genomics, phospha	5e-06
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	5e-06
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	3e-05
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	3e-05
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	3e-05
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	3e-05
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	4e-05
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	4e-05
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	5e-05
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	6e-05
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	9e-05
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	1e-04
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	2e-04
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	2e-04
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	3e-04
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	3e-04
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	3e-04
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	4e-04
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	4e-04
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	4e-04
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	5e-04
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	5e-04
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	6e-04
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	8e-04

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A Length = 187

 Score = 81.6 bits (201), Expect = 2e-20
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 14  IIGQFENLPRLVVFDLDYTLWPFYCECCYEDEI---------------PYLYPHAKGILE 58
                  LP+L VFDLDYTLWPF+ +   +                    LYP    +L+
Sbjct: 19  YFQSMARLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLK 78

Query: 59  ALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95
            L+  G+  A ASR+   + A   L    +   FV  
Sbjct: 79  RLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHR 115

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 Length = 226

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
            E+  P L P  +  +   KE+G+ V +AS SP   + +  L    +   F
Sbjct: 89  VEETRP-LLPGVREAVALCKEQGLLVGLASASP-LHMLEKVLTMFDLRDSF 137

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A Length = 243

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P A  +L+ +K +G+   V + S    + +   H          MV
Sbjct: 110 RMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMV 157

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} Length = 247

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 10/48 (20%), Positives = 16/48 (33%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P A  +L  +K +G+   V + S    +     H          MV
Sbjct: 109 RMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANLMV 156

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Length = 384

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           Y++ I       K +L  LK  G  + +A+  P  +        LG+   F
Sbjct: 209 YQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYF 258

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Length = 233

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
            + +I    P A  +LE L ++ +   +A+     D A   L  L +    + +V
Sbjct: 86  LQHQII-ALPGAVELLETLDKENLKWCIATSGG-IDTATINLKALKLDINKINIV 138

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} Length = 284

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 20/87 (22%)

Query: 8  KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHV 67
                ++ +++     + FD    L          +    L P  +   + LK +G   
Sbjct: 4  IESFKSLLPKYK----CIFFDAFGVLK-------TYNG---LLPGIENTFDYLKAQGQDY 49

Query: 68 AV----ASRSPAPDIAKTFLHKLGIHS 90
           +    ASRSP   +A    HKLG+ S
Sbjct: 50 YIVTNDASRSPE-QLAD-SYHKLGLFS 74

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} Length = 243

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 37  YCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           Y     E  +  + P  + +L  L+ + I V +AS S     A T L  L +   F
Sbjct: 84  YVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSL---NAPTILAALELREFF 136

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} Length = 214

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           ++P    +L  +K +G+ + +AS S         L +  +   F
Sbjct: 90  IFPDVLKVLNEVKSQGLEIGLASSSV-KADIFRALEENRLQGFF 132

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A Length = 258

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 12/70 (17%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKT 81
          ++V FD+D TL         + ++P         +  LK+ G++VA+A+ R+P   + + 
Sbjct: 4  KIVFFDIDGTLLDE------QKQLP---LSTIEAVRRLKQSGVYVAIATGRAPF--MFEH 52

Query: 82 FLHKLGIHSM 91
             +LGI S 
Sbjct: 53 VRKQLGIDSF 62

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14 Length = 264

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++          E     P  K  +E L+EK +         ++SP   +
Sbjct: 6  QGYLIDLDGTIY-------LGKE---PIPAGKRFVERLQEKDLPFLFVTNNTTKSPE-TV 54

Query: 79 AKTFLHKLGIH 89
          A+   ++  IH
Sbjct: 55 AQRLANEFDIH 65

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A Length = 227

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKT 81
          RL   D+D  L         +  I      A   + + ++KG+ V++ S       +   
Sbjct: 6  RLAAIDVDGNLTDR------DRLIS---TKAIESIRSAEKKGLTVSLLSGNVIP--VVYA 54

Query: 82 FLHKLGIHSMFV 93
              LGI+    
Sbjct: 55 LKIFLGINGPVF 66

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} Length = 233

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           L P    +L  LK + I + +AS S     A   L +L I   F
Sbjct: 93  LLPGIGRLLCQLKNENIKIGLASSSR---NAPKILRRLAIIDDF 133

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Length = 205

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 43/115 (37%)

Query: 22  PRLVVFDLDYTL----------------------------WP---------FYCECCYED 44
            +  VFD+D TL                             P         +  E  +E 
Sbjct: 6   IKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLE--HER 63

Query: 45  EIP---YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
           ++       P A  ++  L  +G  + + +R+    +A   L  +G+   F    
Sbjct: 64  DLAQGSRPAPGAVELVRELAGRGYRLGILTRNARE-LAHVTLEAIGLADCFAEAD 117

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* Length = 306

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 21/93 (22%)

Query: 1  MGDLEKVKNEAL-EIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEA 59
          +   E+++  AL +++G+ +     V+FD D  LW         +      P A  +LE 
Sbjct: 3  LARCERLRGAALRDVLGRAQG----VLFDCDGVLW-------NGER---AVPGAPELLER 48

Query: 60 LKEKGIHVAV----ASRSPAPDIAKTFLHKLGI 88
          L   G         + R+      +    +LG 
Sbjct: 49 LARAGKAALFVSNNSRRARPELALR--FARLGF 79

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A* Length = 271

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 20/88 (22%)

Query: 6  KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI 65
          K+ +    ++ + E    L + D+D T +        +D    L P +   LE LKEK  
Sbjct: 5  KIHHHHHHVLDKIE----LFILDMDGTFY-------LDDS---LLPGSLEFLETLKEKNK 50

Query: 66 HVAV----ASRSPAPDIAKTFLHKLGIH 89
                  +S      + K  L  +G+ 
Sbjct: 51 RFVFFTNNSSLGAQDYVRK--LRNMGVD 76

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14 Length = 250

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          + V+ D+D  L        +++      P A   L  + +KG+ + +     S++   D+
Sbjct: 4  KNVICDIDGVLM-------HDNV---AVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQ-DL 52

Query: 79 AKTFLHKLGIH 89
          A       G+ 
Sbjct: 53 AN-RFATAGVD 62

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A Length = 259

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 44  DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             +      A   L AL+  G+  A+ S S    +    L   G+  +    +
Sbjct: 107 TGVT-AIEGAAETLRALRAAGVPFAIGSNSERGRLHLK-LRVAGLTELAGEHI 157

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A Length = 221

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           +YP    +L+ L+   I +A+AS S         L ++ +   F
Sbjct: 92  VYPGILQLLKDLRSNKIKIALASASK---NGPFLLERMNLTGYF 132

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} Length = 268

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + D+D  +                 P     ++ LKE G  +      ++RS    +
Sbjct: 9  KGYIIDIDGVIG-------KSVT---PIPEGVEGVKKLKELGKKIIFVSNNSTRSRR-IL 57

Query: 79 AKTFLHKLGIH 89
           +  L   G+ 
Sbjct: 58 LER-LRSFGLE 67

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A Length = 264

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++                P  +  +E L+EKGI   +     +R+P   +
Sbjct: 6  KGYLIDLDGTIY-------KGKS---RIPAGERFIERLQEKGIPYMLVTNNTTRTPE-SV 54

Query: 79 AKTFLHKLGIH 89
           +  L    + 
Sbjct: 55 QE-MLRGFNVE 64

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Length = 231

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           L   A  +L+ LKE  I +A+ S     +  ++ +H   +   F
Sbjct: 104 LNDGAIELLDTLKENNITMAIVSNKN-GERLRSEIHHKNLTHYF 146

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} Length = 266

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++          E       A   +  LK++G+        +SR+P   +
Sbjct: 7  KGYLIDLDGTMY-------NGTE---KIEEACEFVRTLKDRGVPYLFVTNNSSRTPK-QV 55

Query: 79 AKTFLHKLGIH 89
          A   L    I 
Sbjct: 56 AD-KLVSFDIP 65

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} Length = 274

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKTF 82
          L++ D+D TL            IP     AK  +   ++    V + + RS      +  
Sbjct: 7  LLILDIDGTLRD------EVYGIP---ESAKHAIRLCQKNHCSVVICTGRSMG--TIQDD 55

Query: 83 LHKLGIHSM 91
          +  LG+   
Sbjct: 56 VLSLGVDGY 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.89
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	99.89
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	99.88
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	99.87
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	99.86
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.86
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.86
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	99.86
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.85
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	99.83
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	99.81
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	99.81
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	99.81
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	99.81
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	99.81
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	99.81
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	99.81
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	99.81
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	99.81
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.8
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	99.8
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	99.8
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	99.8
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	99.8
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	99.8
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.8
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	99.79
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	99.79
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	99.79
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.78
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	99.78
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	99.78
2hsz_A	243	Novel predicted phosphatase; structural genomics,	99.78
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	99.77
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	99.77
2o2x_A	218	Hypothetical protein; structural genomics, joint c	99.77
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	99.77
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	99.77
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	99.77
3mn1_A	189	Probable YRBI family phosphatase; structural genom	99.77
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	99.76
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	99.76
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	99.76
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	99.76
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	99.76
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	99.76
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	99.75
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	99.75
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	99.75
3mmz_A	176	Putative HAD family hydrolase; structural genomics	99.75
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	99.75
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.75
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	99.75
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	99.75
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	99.75
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	99.75
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	99.75
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	99.75
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	99.74
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	99.74
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	99.74
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.74
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	99.74
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.74
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	99.74
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	99.73
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	99.72
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	99.72
3fvv_A	232	Uncharacterized protein; unknown function, structu	99.72
1te2_A	226	Putative phosphatase; structural genomics, phospha	99.72
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.71
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	99.7
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	99.7
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	99.7
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	99.7
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	99.7
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	99.7
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	99.7
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	99.69
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	99.69
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	99.69
2zg6_A	220	Putative uncharacterized protein ST2620, probable	99.68
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	99.68
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	99.68
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.67
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.66
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.66
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	99.65
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.65
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	99.65
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	99.65
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	99.62
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.61
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.61
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	99.61
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	99.61
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.59
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	99.58
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	99.57
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	99.56
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	99.55
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	99.55
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	99.55
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	99.54
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	99.52
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	99.51
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	99.49
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	99.49
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	99.48
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	99.45
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	99.45
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	99.45
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	99.44
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	99.41
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	99.39
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	99.35
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	99.34
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	99.33
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	99.25
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	99.16
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	99.15
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	99.14
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	99.13
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	99.12
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	99.1
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	99.09
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	99.08
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	99.07
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	99.06
3dao_A	283	Putative phosphatse; structural genomics, joint ce	99.03
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	99.0
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	99.0
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	98.99
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	98.98
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	98.52
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	98.96
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	98.92
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	98.87
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	98.86
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	98.86
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	98.82
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	98.81
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	98.78
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	98.75
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	98.73
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	98.72
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	98.64
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	98.55
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.33
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	98.1
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	97.83
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	97.7
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	97.48
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	97.42
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	97.35
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	97.34
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	97.31
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	97.12
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	96.8
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	96.74
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	96.74
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	96.58
4gxt_A	385	A conserved functionally unknown protein; structur	96.26
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	96.02
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	95.58
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	95.03
3dao_A	283	Putative phosphatse; structural genomics, joint ce	94.67
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	94.38
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	94.11
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	93.51
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	93.08
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	92.86
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	92.51
4g63_A	470	Cytosolic IMP-GMP specific 5'-nucleotidase; struct	92.18
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	91.64
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	90.51
4fak_A	163	Ribosomal RNA large subunit methyltransferase H; a	88.87
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	87.56
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	87.27
2kln_A	130	Probable sulphate-transport transmembrane protein;	86.01
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	85.92
3dzc_A	396	UDP-N-acetylglucosamine 2-epimerase; structural ge	85.08
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	84.6
3luf_A	259	Two-component system response regulator/ggdef doma	83.71
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	82.14
1ns5_A	155	Hypothetical protein YBEA; structural genomics, PS	81.83
1to0_A	167	Hypothetical UPF0247 protein YYDA; structural geno	81.03

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=99.89  E-value=3e-23  Score=154.92  Aligned_cols=90  Identities=24%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      .++.||+.++++.|+++|++++++||+++.. +...++.+|+.++|+.+.      ..||+|  .+|..    .+++|++
T Consensus        83 ~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~-~~~~l~~~~l~~~fd~~~~~~~~~~~KP~p--~~~~~a~~~lg~~p~e  159 (216)
T 3kbb_A           83 LKENPGVREALEFVKSKRIKLALATSTPQRE-ALERLRRLDLEKYFDVMVFGDQVKNGKPDP--EIYLLVLERLNVVPEK  159 (216)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGCSEEECGGGSSSCTTST--HHHHHHHHHHTCCGGG
T ss_pred             cccCccHHHHHHHHHHcCCCcccccCCcHHH-HHHHHHhcCCCccccccccccccCCCcccH--HHHHHHHHhhCCCccc
Confidence            4688999999999999999999999999988 799999999999998652      347777  55554    6788999


Q ss_pred             eEEEeehHhHHHHHHHhCCchhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      |++++||+++|++|++|||++|.
T Consensus       160 ~l~VgDs~~Di~aA~~aG~~~i~  182 (216)
T 3kbb_A          160 VVVFEDSKSGVEAAKSAGIERIY  182 (216)
T ss_dssp             EEEEECSHHHHHHHHHTTCCCEE
T ss_pred             eEEEecCHHHHHHHHHcCCcEEE
Confidence            99999999999999999999874

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=99.89  E-value=1e-22  Score=149.00  Aligned_cols=119  Identities=13%  Similarity=0.108  Sum_probs=94.5

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHHc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL   86 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~~   86 (149)
                      +|+++||+||||++....+....+..+++||+.++|++|+++|++++|+||++.               .. +...++.+
T Consensus         1 ~k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~   79 (179)
T 3l8h_A            1 MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDK-MHRALAQM   79 (179)
T ss_dssp             CCEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHH-HHHHHHHT
T ss_pred             CCEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHH-HHHHHHhC
Confidence            478999999999985322223334568999999999999999999999999986               45 57888899


Q ss_pred             C--CCCCccc-------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013           87 G--IHSMFVP-------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        87 g--l~~~f~~-------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |  +..+|..       ....||+|..+..+.  .+++|++|++++|++++|.+|++|||+++.+.
T Consensus        80 g~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~  145 (179)
T 3l8h_A           80 GGVVDAIFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQ  145 (179)
T ss_dssp             TCCCCEEEEECCCTTSCCSSSTTSSHHHHHHHHHHTCCCTTCEEEESSHHHHHHHHHHTCEEEEES
T ss_pred             CCceeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCcEEEEC
Confidence            9  7776632       134588885544443  66888999999999999999999999988764

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=99.88  E-value=2e-22  Score=154.82  Aligned_cols=90  Identities=22%  Similarity=0.136  Sum_probs=76.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      ..++||+.++++.|+++|++++++||+..   +...++.+|+..+|+.+.      ..||+|  ++|+.    .+++|++
T Consensus        94 ~~~~pg~~~ll~~L~~~g~~i~i~t~~~~---~~~~l~~~gl~~~fd~i~~~~~~~~~KP~p--~~~~~a~~~lg~~p~e  168 (243)
T 4g9b_A           94 NAVLPGIRSLLADLRAQQISVGLASVSLN---APTILAALELREFFTFCADASQLKNSKPDP--EIFLAACAGLGVPPQA  168 (243)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCCTT---HHHHHHHTTCGGGCSEECCGGGCSSCTTST--HHHHHHHHHHTSCGGG
T ss_pred             ccccccHHHHHHhhhcccccceecccccc---hhhhhhhhhhccccccccccccccCCCCcH--HHHHHHHHHcCCChHH
Confidence            35789999999999999999999999764   356799999999998762      347777  55554    6788999


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++++||++||+||++|||++|.+.
T Consensus       169 ~l~VgDs~~di~aA~~aG~~~I~V~  193 (243)
T 4g9b_A          169 CIGIEDAQAGIDAINASGMRSVGIG  193 (243)
T ss_dssp             EEEEESSHHHHHHHHHHTCEEEEES
T ss_pred             EEEEcCCHHHHHHHHHcCCEEEEEC
Confidence            9999999999999999999998653

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.87  E-value=1.7e-22  Score=151.25  Aligned_cols=92  Identities=18%  Similarity=0.182  Sum_probs=77.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc----cCCChhHHHHHH--hhCCCcceEEE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR----LSCCIMCIIFFL--FFFSISAFILF  120 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~----~~p~p~~~i~~~--~~~~~~~~l~~  120 (149)
                      ..++||+.++|+.|++ |++++++||++... ++..++.+|+..+|+.+..    .||+|.++..+.  .+++|++|++|
T Consensus        83 ~~~~~g~~~~l~~L~~-~~~l~i~T~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~Kp~p~~~~~~~~~lg~~p~~~~~v  160 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSS-SYPLYITTTKDTST-AQDMAKNLEIHHFFDGIYGSSPEAPHKADVIHQALQTHQLAPEQAIII  160 (210)
T ss_dssp             CEECTTHHHHHHHHHT-TSCEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEECSSCCSHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             CCCCCCHHHHHHHHHc-CCeEEEEeCCCHHH-HHHHHHhcCchhheeeeecCCCCCCCChHHHHHHHHHcCCCcccEEEE
Confidence            4678999999999999 99999999999888 6899999999999987532    366664333333  56888999999


Q ss_pred             eehHhHHHHHHHhCCchhhh
Q 032013          121 VDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       121 eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +||++||++|++|||+++.+
T Consensus       161 gDs~~Di~~a~~aG~~~i~v  180 (210)
T 2ah5_A          161 GDTKFDMLGARETGIQKLAI  180 (210)
T ss_dssp             ESSHHHHHHHHHHTCEEEEE
T ss_pred             CCCHHHHHHHHHCCCcEEEE
Confidence            99999999999999998754

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=99.86  E-value=8.4e-22  Score=151.68  Aligned_cols=92  Identities=16%  Similarity=0.079  Sum_probs=75.7

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++++.|+++|++++++|++.  . +...++.+|+.++|+.+.      ..||+|.++..+.  .+++|++|+
T Consensus       115 ~~~~p~~~~ll~~Lk~~g~~i~i~~~~~--~-~~~~L~~~gl~~~Fd~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l  191 (250)
T 4gib_A          115 NDILPGIESLLIDVKSNNIKIGLSSASK--N-AINVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCI  191 (250)
T ss_dssp             GGSCTTHHHHHHHHHHTTCEEEECCSCT--T-HHHHHHHHTCGGGCSEECCGGGCCSCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             cccchhHHHHHHHHHhcccccccccccc--h-hhhHhhhcccccccceeecccccCCCCCcHHHHHHHHHHhCCChHHeE
Confidence            4578999999999999999999887764  3 467899999999998762      3477774443333  678899999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +++||+++|+||++|||++|.+.
T Consensus       192 ~VGDs~~Di~aA~~aG~~~i~v~  214 (250)
T 4gib_A          192 GIEDASAGIDAINSANMFSVGVG  214 (250)
T ss_dssp             EEESSHHHHHHHHHTTCEEEEES
T ss_pred             EECCCHHHHHHHHHcCCEEEEEC
Confidence            99999999999999999998653

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.86  E-value=1.5e-21  Score=144.72  Aligned_cols=119  Identities=29%  Similarity=0.421  Sum_probs=95.3

Q ss_pred             CCccEEEEecCCccccccccc---------------cccCCCCccCccHHHHHHHHHHCCceEEEEeCCC-chHHHHHHH
Q 032013           20 NLPRLVVFDLDYTLWPFYCEC---------------CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFL   83 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~---------------~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~-~~~i~~~~l   83 (149)
                      .++++|+||+||||++.+...               ....+...+.||+.++|++|+++|++++|+||++ +.. ++..+
T Consensus        25 ~~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~-~~~~l  103 (187)
T 2wm8_A           25 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEG-ANQLL  103 (187)
T ss_dssp             TSCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSCHHH-HHHHH
T ss_pred             hccCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCCChHH-HHHHH
Confidence            358999999999999643210               0012335789999999999999999999999998 577 79999


Q ss_pred             HHcCCCCCccccc-ccCCChhHHHHHH----hhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013           84 HKLGIHSMFVPMV-RLSCCIMCIIFFL----FFFSISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        84 ~~~gl~~~f~~~~-~~~p~p~~~i~~~----~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +.+|+..+|+.+. ..+|+|  ..|..    .+++|++|++++|+++++.+|++||++++.+.
T Consensus       104 ~~~gl~~~f~~~~~~~~~k~--~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~i~v~  164 (187)
T 2wm8_A          104 ELFDLFRYFVHREIYPGSKI--THFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQ  164 (187)
T ss_dssp             HHTTCTTTEEEEEESSSCHH--HHHHHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEEEECS
T ss_pred             HHcCcHhhcceeEEEeCchH--HHHHHHHHHcCCChHHEEEEeCCccChHHHHHcCCEEEEEC
Confidence            9999999998753 335555  44443    56888999999999999999999999988654

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.86  E-value=3.4e-21  Score=143.10  Aligned_cols=120  Identities=18%  Similarity=0.095  Sum_probs=96.2

Q ss_pred             ccEEEEecCCcccccccc-----ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---hHHHHHHHHHcCCCCCcc
Q 032013           22 PRLVVFDLDYTLWPFYCE-----CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLHKLGIHSMFV   93 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~-----~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---~~i~~~~l~~~gl~~~f~   93 (149)
                      +++|+||+||||++....     .........++||+.++|++|+++|++++|+||++.   .. +...++.+|+..+|+
T Consensus         3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~-~~~~l~~~gl~~~fd   81 (189)
T 3ib6_A            3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEV-IKRVLTNFGIIDYFD   81 (189)
T ss_dssp             CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHH-HHHHHHHTTCGGGEE
T ss_pred             ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHH-HHHHHHhcCchhheE
Confidence            789999999999873221     112233468999999999999999999999999987   66 799999999999988


Q ss_pred             ccc----------ccCCChhHHHHHH--hhCCCcceEEEeeh-HhHHHHHHHhCCchhhhhh
Q 032013           94 PMV----------RLSCCIMCIIFFL--FFFSISAFILFVDL-FCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        94 ~~~----------~~~p~p~~~i~~~--~~~~~~~~l~~eDs-~~gi~aa~~ag~~~~~~~~  142 (149)
                      .+.          ..||+|..+..+.  .+++|++|++++|+ .+++.+|++|||+++.+.+
T Consensus        82 ~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~~  143 (189)
T 3ib6_A           82 FIYASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQN  143 (189)
T ss_dssp             EEEECCTTSSTTCCCTTSHHHHHHHHHHHTCCGGGEEEEESBTTTTHHHHHHTTCEEEEECC
T ss_pred             EEEEccccccccCCCCcCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHCCCeEEEECC
Confidence            762          2266764433333  56888999999999 7999999999999998765

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=99.86  E-value=1.6e-21  Score=146.81  Aligned_cols=119  Identities=17%  Similarity=0.060  Sum_probs=83.2

Q ss_pred             CCccEEEEecCCcccccccccccc----CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYE----DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~----~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      +.+++|+||+||||++........    .+...++||+.++|++|+++|++++|+||++... +...++ ..+..++...
T Consensus         4 ~~~kav~fDlDGTL~d~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~-~~~~~~-~~~d~v~~~~   81 (196)
T 2oda_A            4 PTFPALLFGLSGCLVDFGAQAATSDTPDDEHAQLTPGAQNALKALRDQGMPCAWIDELPEAL-STPLAA-PVNDWMIAAP   81 (196)
T ss_dssp             -CCSCEEEETBTTTBCTTSTTTSCSSCCGGGGSBCTTHHHHHHHHHHHTCCEEEECCSCHHH-HHHHHT-TTTTTCEECC
T ss_pred             CcCCEEEEcCCCceEeccccccchhhcccccCCcCcCHHHHHHHHHHCCCEEEEEcCChHHH-HHHhcC-ccCCEEEECC
Confidence            457899999999999832110000    1224689999999999999999999999998776 444333 1111122212


Q ss_pred             --cccCCChhHHHHHH--hhCCC-cceEEEeehHhHHHHHHHhCCchhhh
Q 032013           96 --VRLSCCIMCIIFFL--FFFSI-SAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        96 --~~~~p~p~~~i~~~--~~~~~-~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                        ...||+|..+..+.  .++.+ ++|++++||++||++|++|||++|.+
T Consensus        82 ~~~~~KP~p~~~~~a~~~l~~~~~~~~v~VGDs~~Di~aA~~aG~~~i~v  131 (196)
T 2oda_A           82 RPTAGWPQPDACWMALMALNVSQLEGCVLISGDPRLLQSGLNAGLWTIGL  131 (196)
T ss_dssp             CCSSCTTSTHHHHHHHHHTTCSCSTTCEEEESCHHHHHHHHHHTCEEEEE
T ss_pred             cCCCCCCChHHHHHHHHHcCCCCCccEEEEeCCHHHHHHHHHCCCEEEEE
Confidence              24577774444444  44554 78999999999999999999998865

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.85  E-value=2.1e-21  Score=135.16  Aligned_cols=110  Identities=14%  Similarity=0.046  Sum_probs=92.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-----
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-----   96 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-----   96 (149)
                      +++++||+||||++.          ..++||+.++|++|+++|++++++||++... +...++.+|+..+|+.+.     
T Consensus         2 ~k~i~~D~DgtL~~~----------~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~-~~~~l~~~~l~~~f~~i~~~~~~   70 (137)
T 2pr7_A            2 MRGLIVDYAGVLDGT----------DEDQRRWRNLLAAAKKNGVGTVILSNDPGGL-GAAPIRELETNGVVDKVLLSGEL   70 (137)
T ss_dssp             CCEEEECSTTTTSSC----------HHHHHHHHHHHHHHHHTTCEEEEEECSCCGG-GGHHHHHHHHTTSSSEEEEHHHH
T ss_pred             CcEEEEeccceecCC----------CccCccHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHCChHhhccEEEEeccC
Confidence            578999999999652          3588999999999999999999999999988 688999999988887652     


Q ss_pred             -ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           97 -RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        97 -~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                       ..||+|.....+.  .+++|++|++++|+++++.+|+++|++++.+.+
T Consensus        71 ~~~Kp~~~~~~~~~~~~~~~~~~~~~vgD~~~di~~a~~~G~~~i~~~~  119 (137)
T 2pr7_A           71 GVEKPEEAAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQQ  119 (137)
T ss_dssp             SCCTTSHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTCEEEECSC
T ss_pred             CCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCEEEEeCC
Confidence             3577774443333  557778999999999999999999999987754

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=99.83  E-value=4.1e-20  Score=139.73  Aligned_cols=118  Identities=12%  Similarity=-0.043  Sum_probs=91.5

Q ss_pred             CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFL   83 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l   83 (149)
                      ..++++++||+||||++...+ ....+...++||+.++|++|+++|++++|+||++.               .. +...+
T Consensus        22 ~~~~k~v~~D~DGTL~~~~~~-~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~-~~~~l   99 (211)
T 2gmw_A           22 AKSVPAIFLDRDGTINVDHGY-VHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEW-MDWSL   99 (211)
T ss_dssp             --CBCEEEECSBTTTBCCCSS-CCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHH-HHHHH
T ss_pred             hhcCCEEEEcCCCCeECCCCc-ccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHH-HHHHH
Confidence            344789999999999985322 12233457899999999999999999999999983               56 68889


Q ss_pred             HHcCCCCCcccc------------------cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCch-hhh
Q 032013           84 HKLGIHSMFVPM------------------VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDL-YVY  140 (149)
Q Consensus        84 ~~~gl~~~f~~~------------------~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~-~~~  140 (149)
                      +.+|+.  |+.+                  ...||+|.....+.  .++++++|++++|++++|.+|++|||++ +.+
T Consensus       100 ~~~gl~--f~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~lgi~~~~~~~VGD~~~Di~~a~~aG~~~~i~v  175 (211)
T 2gmw_A          100 ADRDVD--LDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLV  175 (211)
T ss_dssp             HHTTCC--CSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSEEEEE
T ss_pred             HHcCCc--eEEEEECCcCCCCcccccCccCcCCCCCHHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHCCCceEEEE
Confidence            999986  3321                  23578885544443  5678899999999999999999999998 654

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=99.81  E-value=3.3e-20  Score=137.54  Aligned_cols=121  Identities=16%  Similarity=0.106  Sum_probs=96.5

Q ss_pred             CccEEEEecCCcccccccccc--------------------------------------ccCCCCccCccHHHHHHHHHH
Q 032013           21 LPRLVVFDLDYTLWPFYCECC--------------------------------------YEDEIPYLYPHAKGILEALKE   62 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~--------------------------------------~~~~~~~~~pg~~e~L~~Lk~   62 (149)
                      ++|+|+||+||||++....|.                                      .......++|++.++|++|++
T Consensus         5 ~~k~iifDlDGTL~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   84 (205)
T 3m9l_A            5 EIKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHERDLAQGSRPAPGAVELVRELAG   84 (205)
T ss_dssp             GCCEEEECTBTTTEEEEECHHHHHHHTTCCTTSCHHHHHHHSCHHHHHHHHHHHHHTHHHHEEEEEECTTHHHHHHHHHH
T ss_pred             cCCEEEEeCCCcCcccHHHHHHHHHHhCCCchHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHh
Confidence            479999999999998533211                                      001234688999999999999


Q ss_pred             CCceEEEEeCCCchHHHHHHHHHcCCCCCc--ccc-----cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHh
Q 032013           63 KGIHVAVASRSPAPDIAKTFLHKLGIHSMF--VPM-----VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYV  133 (149)
Q Consensus        63 ~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f--~~~-----~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~a  133 (149)
                      +|++++++||++... +...++.+|+..+|  +.+     ...||+|.+...+.  .++++++|++|.|+.+++.+|++|
T Consensus        85 ~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~i~~~~~~~~kp~~~~~~~~~~~~g~~~~~~i~iGD~~~Di~~a~~a  163 (205)
T 3m9l_A           85 RGYRLGILTRNAREL-AHVTLEAIGLADCFAEADVLGRDEAPPKPHPGGLLKLAEAWDVSPSRMVMVGDYRFDLDCGRAA  163 (205)
T ss_dssp             TTCEEEEECSSCHHH-HHHHHHHTTCGGGSCGGGEECTTTSCCTTSSHHHHHHHHHTTCCGGGEEEEESSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCchHH-HHHHHHHcCchhhcCcceEEeCCCCCCCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHc
Confidence            999999999999888 79999999999888  443     23477775554444  567779999999999999999999


Q ss_pred             CCchhhhhh
Q 032013          134 GCDLYVYKR  142 (149)
Q Consensus       134 g~~~~~~~~  142 (149)
                      |++++.+.+
T Consensus       164 G~~~i~v~~  172 (205)
T 3m9l_A          164 GTRTVLVNL  172 (205)
T ss_dssp             TCEEEECSS
T ss_pred             CCEEEEEeC
Confidence            998877643

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=99.81  E-value=5.4e-20  Score=134.87  Aligned_cols=94  Identities=15%  Similarity=0.187  Sum_probs=80.6

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceEE
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFIL  119 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l~  119 (149)
                      .++|++.++|++|+++|++++++||++... ++..++.+|+..+|+.+.      ..||+|.+...+.  .++++++|++
T Consensus        89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~  167 (214)
T 3e58_A           89 LIFPDVLKVLNEVKSQGLEIGLASSSVKAD-IFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALI  167 (214)
T ss_dssp             HBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHHHTCCGGGEEE
T ss_pred             CcCchHHHHHHHHHHCCCCEEEEeCCcHHH-HHHHHHHcCcHhheeeEeecccccCCCCChHHHHHHHHHcCCChHHeEE
Confidence            688999999999999999999999999888 799999999999888652      3477775544443  6688899999


Q ss_pred             EeehHhHHHHHHHhCCchhhhhh
Q 032013          120 FVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       120 ~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      |.|+++++.+|++||++++.+.+
T Consensus       168 iGD~~~Di~~a~~aG~~~~~~~~  190 (214)
T 3e58_A          168 IEDSEKGIAAGVAADVEVWAIRD  190 (214)
T ss_dssp             EECSHHHHHHHHHTTCEEEEECC
T ss_pred             EeccHhhHHHHHHCCCEEEEECC
Confidence            99999999999999999987654

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=99.81  E-value=3e-20  Score=145.16  Aligned_cols=91  Identities=18%  Similarity=0.063  Sum_probs=72.7

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc--C-------------CCCCccccc-ccCCChhHHHHHH-
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL--G-------------IHSMFVPMV-RLSCCIMCIIFFL-  109 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~--g-------------l~~~f~~~~-~~~p~p~~~i~~~-  109 (149)
                      .+++||+.++|++    |++++|+||+++.. ++..++.+  |             +..+|+... +.||+|.++..+. 
T Consensus       124 ~~~~pgv~e~L~~----g~~l~i~Tn~~~~~-~~~~l~~~~~g~~~~~~~l~l~~~~~~~f~~~~~g~KP~p~~~~~a~~  198 (253)
T 2g80_A          124 APVYADAIDFIKR----KKRVFIYSSGSVKA-QKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTSGKKTETQSYANILR  198 (253)
T ss_dssp             BCCCHHHHHHHHH----CSCEEEECSSCHHH-HHHHHHSBCCTTCTTSCCBCCGGGCCEEECHHHHCCTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHc----CCEEEEEeCCCHHH-HHHHHHhhcccccccccccchHhhcceEEeeeccCCCCCHHHHHHHHH
Confidence            3567888888877    99999999999988 68888887  5             555666544 5688884444433 


Q ss_pred             -hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          110 -FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       110 -~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                       .+++|++|+++|||++||+||++|||+++.+.+
T Consensus       199 ~lg~~p~~~l~vgDs~~di~aA~~aG~~~i~v~~  232 (253)
T 2g80_A          199 DIGAKASEVLFLSDNPLELDAAAGVGIATGLASR  232 (253)
T ss_dssp             HHTCCGGGEEEEESCHHHHHHHHTTTCEEEEECC
T ss_pred             HcCCCcccEEEEcCCHHHHHHHHHcCCEEEEEcC
Confidence             678889999999999999999999999987654

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=99.81  E-value=4.3e-20  Score=136.38  Aligned_cols=119  Identities=13%  Similarity=0.024  Sum_probs=92.0

Q ss_pred             CCCccEEEEecCCcccccc--ccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC---------------CchHHHHH
Q 032013           19 ENLPRLVVFDLDYTLWPFY--CECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---------------PAPDIAKT   81 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~--~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---------------~~~~i~~~   81 (149)
                      .+.+++++||+||||++..  .++....+..+++||+.++|++|+++|++++|+||+               +... +..
T Consensus        11 ~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~   89 (176)
T 2fpr_A           11 GSSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNL-MMQ   89 (176)
T ss_dssp             --CCEEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHH-HHH
T ss_pred             CCcCcEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHH-HHH
Confidence            4568999999999999852  122222344679999999999999999999999998               4555 688


Q ss_pred             HHHHcCCCCCcccc-----------cccCCChhHHHHHH----hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           82 FLHKLGIHSMFVPM-----------VRLSCCIMCIIFFL----FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        82 ~l~~~gl~~~f~~~-----------~~~~p~p~~~i~~~----~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      .++.+|+.  |+.+           ...||+|  .+|..    .+++|++|++++|+++++.+|++|||+++.+.+
T Consensus        90 ~l~~~gl~--fd~v~~s~~~~~~~~~~~KP~p--~~~~~~~~~~gi~~~~~l~VGD~~~Di~~A~~aG~~~i~v~~  161 (176)
T 2fpr_A           90 IFTSQGVQ--FDEVLICPHLPADECDCRKPKV--KLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDR  161 (176)
T ss_dssp             HHHHTTCC--EEEEEEECCCGGGCCSSSTTSC--GGGGGGC----CCGGGCEEEESSHHHHHHHHHHTSEEEECBT
T ss_pred             HHHHcCCC--eeEEEEcCCCCcccccccCCCH--HHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHcCCeEEEEcC
Confidence            99999986  5433           1347777  55554    467889999999999999999999999987765

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=99.81  E-value=6.7e-20  Score=137.51  Aligned_cols=95  Identities=19%  Similarity=0.211  Sum_probs=81.0

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCc-c
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSIS-A  116 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~-~  116 (149)
                      ...+.|++.++|++|+++|++++++||++... +...++.+|+..+|+.+.      ..||+|.+...+.  .+++++ +
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~  179 (231)
T 3kzx_A          101 NFMLNDGAIELLDTLKENNITMAIVSNKNGER-LRSEIHHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTNINIEPSKE  179 (231)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEETSSSCCTTSSHHHHHHHHHHTCCCSTT
T ss_pred             cceECcCHHHHHHHHHHCCCeEEEEECCCHHH-HHHHHHHCCchhheeeEEcccccCCCCCChHHHHHHHHHcCCCcccC
Confidence            46789999999999999999999999999888 799999999999888652      3477775544444  667888 9


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++|+|+++++.+|++||+.++.+.
T Consensus       180 ~v~vGD~~~Di~~a~~aG~~~v~~~  204 (231)
T 3kzx_A          180 VFFIGDSISDIQSAIEAGCLPIKYG  204 (231)
T ss_dssp             EEEEESSHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEcCCHHHHHHHHHCCCeEEEEC
Confidence            9999999999999999999988764

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=99.81  E-value=4.4e-20  Score=137.64  Aligned_cols=94  Identities=20%  Similarity=0.204  Sum_probs=79.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|+.|+++|++++++||+.... ++..++.+|+..+|+.+.      ..||+|.+...+.  .+++|++|+
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~i  163 (226)
T 3mc1_A           85 NKVYDGIEALLSSLKDYGFHLVVATSKPTVF-SKQILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNIKSDDAI  163 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEECTTSSSCSHHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhCCHhheeeeeccCCCCCCCCCHHHHHHHHHHhCcCcccEE
Confidence            5689999999999999999999999998888 799999999999888762      2366664444443  668889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|+|+++++.+|++||++++.+.
T Consensus       164 ~iGD~~~Di~~a~~aG~~~i~v~  186 (226)
T 3mc1_A          164 MIGDREYDVIGALKNNLPSIGVT  186 (226)
T ss_dssp             EEESSHHHHHHHHTTTCCEEEES
T ss_pred             EECCCHHHHHHHHHCCCCEEEEc
Confidence            99999999999999999887653

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=99.81  E-value=9e-20  Score=136.87  Aligned_cols=94  Identities=14%  Similarity=0.123  Sum_probs=79.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++|++.++|++|+++|++++++||++... +...++.+|+..+|+.+.      ..||+|.+...+.  .+++|++|+
T Consensus        94 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  172 (232)
T 1zrn_A           94 LAPFSEVPDSLRELKRRGLKLAILSNGSPQS-IDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAIL  172 (232)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGGEE
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHhcChHhhhheEEEecccCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            3577999999999999999999999999888 689999999988887652      3477774444443  568889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|.|+.+++.+|++||+.++.+.
T Consensus       173 ~iGD~~~Di~~a~~aG~~~~~~~  195 (232)
T 1zrn_A          173 FVASNAWDATGARYFGFPTCWIN  195 (232)
T ss_dssp             EEESCHHHHHHHHHHTCCEEEEC
T ss_pred             EEeCCHHHHHHHHHcCCEEEEEc
Confidence            99999999999999999988754

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=99.81  E-value=1.4e-19  Score=136.35  Aligned_cols=93  Identities=15%  Similarity=0.029  Sum_probs=75.7

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc--ccc------cccCCChhHHHHHH--hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF--VPM------VRLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f--~~~------~~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ..++||+.++|++|+++|++++++||++... +...++. ++..+|  +.+      ...||+|.+...+.  .+++|++
T Consensus       107 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~-~l~~~f~~~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  184 (247)
T 3dv9_A          107 AERMPGALEVLTKIKSEGLTPMVVTGSGQTS-LLDRLNH-NFPGIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNE  184 (247)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSCC----CHHHHHH-HSTTTCCGGGEECGGGCSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEcCCchHH-HHHHHHh-hHHHhcCCCeEEecccCCCCCCCCHHHHHHHHHcCCChhh
Confidence            5788999999999999999999999999887 6888888 999988  544      23577775444443  6788899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++|.|+++++.+|++||+.++.+.
T Consensus       185 ~i~vGD~~~Di~~a~~aG~~~i~v~  209 (247)
T 3dv9_A          185 ALVIENAPLGVQAGVAAGIFTIAVN  209 (247)
T ss_dssp             EEEEECSHHHHHHHHHTTSEEEEEC
T ss_pred             eEEEeCCHHHHHHHHHCCCeEEEEc
Confidence            9999999999999999999987654

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=99.81  E-value=8.7e-20  Score=138.86  Aligned_cols=92  Identities=15%  Similarity=0.092  Sum_probs=77.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|+.|+++|++++++||++... ++..++.+|+. +|+.+.      ..||+|.+...+.  .+++|++|+
T Consensus       109 ~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~-~f~~~~~~~~~~~~Kp~p~~~~~~~~~l~~~~~~~~  186 (240)
T 2hi0_A          109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEA-VQVLVEELFPG-SFDFALGEKSGIRRKPAPDMTSECVKVLGVPRDKCV  186 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHSTT-TCSEEEEECTTSCCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCc-ceeEEEecCCCCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence            4578999999999999999999999998887 68999999988 887642      3477775544444  668889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +|+||++++.+|++||++++.+
T Consensus       187 ~vGDs~~Di~~a~~aG~~~v~v  208 (240)
T 2hi0_A          187 YIGDSEIDIQTARNSEMDEIAV  208 (240)
T ss_dssp             EEESSHHHHHHHHHTTCEEEEE
T ss_pred             EEcCCHHHHHHHHHCCCeEEEE
Confidence            9999999999999999997654

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.80  E-value=5.9e-20  Score=132.63  Aligned_cols=115  Identities=17%  Similarity=0.080  Sum_probs=90.5

Q ss_pred             ccEEEEecCCccccccccccccCC-CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDE-IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~-~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p  100 (149)
                      +++++||+||||+++...+....+ ...+.|+..++|++|+++|++++|+||++... ++..++.+|+..+|+.   .+|
T Consensus         9 ~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~~~~---~kp   84 (162)
T 2p9j_A            9 LKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAP-LITRLKELGVEEIYTG---SYK   84 (162)
T ss_dssp             CCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHH-HHHHHHHTTCCEEEEC---C--
T ss_pred             eeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCHhhccC---CCC
Confidence            789999999999985433221111 11345778899999999999999999999998 7999999999887764   678


Q ss_pred             ChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          101 CIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       101 ~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +|.....+.  .++++++|+++.|+++++.+|++||+.+++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~ag~~~~~~  126 (162)
T 2p9j_A           85 KLEIYEKIKEKYSLKDEEIGFIGDDVVDIEVMKKVGFPVAVR  126 (162)
T ss_dssp             CHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEECT
T ss_pred             CHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEec
Confidence            885544443  5577899999999999999999999998764

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=99.80  E-value=2.7e-19  Score=133.45  Aligned_cols=96  Identities=13%  Similarity=0.155  Sum_probs=81.2

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...+.|++.++|+.|+++|++++++||++... +...++.+|+..+|+.+.      ..||+|.....+.  .++++++|
T Consensus        94 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  172 (230)
T 3um9_A           94 SLTPFADVPQALQQLRAAGLKTAILSNGSRHS-IRQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAMDTLHLGESEI  172 (230)
T ss_dssp             SCCBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHTCGGGCSEEEEGGGTTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             cCCCCCCHHHHHHHHHhCCCeEEEEeCCCHHH-HHHHHHHCCChhhcceeEehhhcccCCCChHHHHHHHHHhCCCcccE
Confidence            45789999999999999999999999999888 699999999998887652      3477775544443  66888999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      ++|.|+++++.+|++||+.++.+.+
T Consensus       173 ~~iGD~~~Di~~a~~aG~~~~~~~~  197 (230)
T 3um9_A          173 LFVSCNSWDATGAKYFGYPVCWINR  197 (230)
T ss_dssp             EEEESCHHHHHHHHHHTCCEEEECT
T ss_pred             EEEeCCHHHHHHHHHCCCEEEEEeC
Confidence            9999999999999999999988543

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=99.80  E-value=1.5e-19  Score=136.98  Aligned_cols=93  Identities=15%  Similarity=0.003  Sum_probs=78.6

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc--ccc------cccCCChhHHHHHH--hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF--VPM------VRLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f--~~~------~~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ..++|++.++|++|+++|++++++||++... +...++. ++..+|  +.+      ...||+|.++..+.  .+++|++
T Consensus       108 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~-~l~~~f~~d~i~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  185 (243)
T 3qxg_A          108 AERMPGAWELLQKVKSEGLTPMVVTGSGQLS-LLERLEH-NFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADE  185 (243)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECCCCCHH-HHTTHHH-HSTTTCCGGGEECTTTCSSCTTSSHHHHHHHHHTTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHH-hHHHhcCcceEEeHHhCCCCCCChHHHHHHHHHcCCCHHH
Confidence            5789999999999999999999999999888 6888888 999999  544      23577775544444  5678899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++|+|+++++.+|++||+.++.+.
T Consensus       186 ~i~vGD~~~Di~~a~~aG~~~i~v~  210 (243)
T 3qxg_A          186 AVVIENAPLGVEAGHKAGIFTIAVN  210 (243)
T ss_dssp             EEEEECSHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEeCCHHHHHHHHHCCCEEEEEe
Confidence            9999999999999999999988753

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=99.80  E-value=9.3e-20  Score=136.99  Aligned_cols=96  Identities=14%  Similarity=0.080  Sum_probs=81.2

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ....++||+.++|+.|+++|++++++||+.... ++..++.+|+..+|+.+.      ..||+|.+...+.  .++++++
T Consensus       101 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  179 (237)
T 4ex6_A          101 GPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKA-ARAIAELTGLDTRLTVIAGDDSVERGKPHPDMALHVARGLGIPPER  179 (237)
T ss_dssp             GGGGBCTTHHHHHHHHHHTTEEEEEECSSCHHH-HHHHHHHHTGGGTCSEEECTTTSSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             cCCccCCCHHHHHHHHHhCCCcEEEEcCCChHH-HHHHHHHcCchhheeeEEeCCCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence            345689999999999999999999999999888 799999999998888652      3577775544444  6688899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++|+|+++++.+|++||++++.+.
T Consensus       180 ~i~vGD~~~Di~~a~~aG~~~i~v~  204 (237)
T 4ex6_A          180 CVVIGDGVPDAEMGRAAGMTVIGVS  204 (237)
T ss_dssp             EEEEESSHHHHHHHHHTTCEEEEES
T ss_pred             eEEEcCCHHHHHHHHHCCCeEEEEe
Confidence            9999999999999999999887653

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=99.80  E-value=1.8e-19  Score=136.24  Aligned_cols=93  Identities=16%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceEE
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFIL  119 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l~  119 (149)
                      .++||+.++|++|+++|++++++||++... +...++.+|+..+|+.+.      ..||+|.+...+.  .+++|++|++
T Consensus       105 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~  183 (240)
T 2no4_A          105 SAYPDAAETLEKLKSAGYIVAILSNGNDEM-LQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCF  183 (240)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHHTCCGGGEEE
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHhcCcHHHcCEEEEccccCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence            567999999999999999999999999888 799999999998887642      3477774444443  5688899999


Q ss_pred             EeehHhHHHHHHHhCCchhhhh
Q 032013          120 FVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       120 ~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |.|+.+++.+|++||+.++.+.
T Consensus       184 iGD~~~Di~~a~~aG~~~~~v~  205 (240)
T 2no4_A          184 VSSNAWDLGGAGKFGFNTVRIN  205 (240)
T ss_dssp             EESCHHHHHHHHHHTCEEEEEC
T ss_pred             EeCCHHHHHHHHHCCCEEEEEC
Confidence            9999999999999999988754

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=99.80  E-value=2e-19  Score=135.60  Aligned_cols=95  Identities=22%  Similarity=0.142  Sum_probs=79.8

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ....++||+.++|+.|+++|++++++||++... ++..++.+|+..+|+.+.      ..||+|.+...+.  .++++++
T Consensus        80 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  158 (222)
T 2nyv_A           80 VYTKPYPEIPYTLEALKSKGFKLAVVSNKLEEL-SKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEK  158 (222)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGCSEEECTTSSCTTCCTTHHHHHHHHHHTCCGGG
T ss_pred             ccCccCCCHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCHHHheEEEecCcCCCCCCChHHHHHHHHHhCCCchh
Confidence            346789999999999999999999999998887 689999999988887653      3467775444443  5678899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      |++++||.+++.+|++||+.++.+
T Consensus       159 ~~~vGD~~~Di~~a~~aG~~~i~v  182 (222)
T 2nyv_A          159 ALIVGDTDADIEAGKRAGTKTALA  182 (222)
T ss_dssp             EEEEESSHHHHHHHHHHTCEEEEE
T ss_pred             EEEECCCHHHHHHHHHCCCeEEEE
Confidence            999999999999999999997754

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=99.79  E-value=2.9e-19  Score=133.26  Aligned_cols=94  Identities=16%  Similarity=0.030  Sum_probs=80.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..+.|++.++|++|+++|++++++||+.... +...++.+|+..+|+.+.      ..||+|.+...+.  .++++++|+
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~i  168 (233)
T 3s6j_A           90 IIALPGAVELLETLDKENLKWCIATSGGIDT-ATINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECL  168 (233)
T ss_dssp             CEECTTHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHTTTCCTTSSCEECGGGSSCCTTSTHHHHHHHHHTTCCGGGEE
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCchhh-HHHHHHhcchhhhhheeeccccCCCCCCChHHHHHHHHHhCCCHHHEE
Confidence            5789999999999999999999999999888 799999999999887652      3577775544444  567789999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|.|+++++.+|++||++++.+.
T Consensus       169 ~iGD~~~Di~~a~~aG~~~i~v~  191 (233)
T 3s6j_A          169 VIGDAIWDMLAARRCKATGVGLL  191 (233)
T ss_dssp             EEESSHHHHHHHHHTTCEEEEEG
T ss_pred             EEeCCHHhHHHHHHCCCEEEEEe
Confidence            99999999999999999888764

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=99.79  E-value=2.1e-19  Score=130.02  Aligned_cols=117  Identities=11%  Similarity=-0.066  Sum_probs=89.7

Q ss_pred             CCccEEEEecCCccccccccccccCCCCc-cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPY-LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~-~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~   98 (149)
                      .++++++||+||||+++...+....+... ....-..+|++|+++|++++++||++... ++..++.+|+..+|...   
T Consensus         2 ~~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~~~~~---   77 (164)
T 3e8m_A            2 KEIKLILTDIDGVWTDGGMFYDQTGNEWKKFNTSDSAGIFWAHNKGIPVGILTGEKTEI-VRRRAEKLKVDYLFQGV---   77 (164)
T ss_dssp             CCCCEEEECSTTTTSSSEEEECSSSCEEEEEEGGGHHHHHHHHHTTCCEEEECSSCCHH-HHHHHHHTTCSEEECSC---
T ss_pred             CcceEEEEcCCCceEcCcEEEcCCCcEEEEecCChHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHcCCCEeeccc---
Confidence            35899999999999996433222211111 11111236999999999999999999998 79999999998888764   


Q ss_pred             CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +|+|.....+.  .++++++|+++.|+.+++.+|++||+.+++.
T Consensus        78 kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~~~~~  121 (164)
T 3e8m_A           78 VDKLSAAEELCNELGINLEQVAYIGDDLNDAKLLKRVGIAGVPA  121 (164)
T ss_dssp             SCHHHHHHHHHHHHTCCGGGEEEECCSGGGHHHHTTSSEEECCT
T ss_pred             CChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEcC
Confidence            78885554444  5677899999999999999999999988773

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=99.79  E-value=3.5e-19  Score=133.26  Aligned_cols=95  Identities=13%  Similarity=0.178  Sum_probs=80.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++|++.++|+.|+++|++++++||++... +...++.+|+..+|+.+.      ..||+|.....+.  .++++++|+
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (233)
T 3umb_A           98 LSAFPENVPVLRQLREMGLPLGILSNGNPQM-LEIAVKSAGMSGLFDHVLSVDAVRLYKTAPAAYALAPRAFGVPAAQIL  176 (233)
T ss_dssp             CEECTTHHHHHHHHHTTTCCEEEEESSCHHH-HHHHHHTTTCTTTCSEEEEGGGTTCCTTSHHHHTHHHHHHTSCGGGEE
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHH-HHHHHHHCCcHhhcCEEEEecccCCCCcCHHHHHHHHHHhCCCcccEE
Confidence            5678999999999999999999999999888 799999999999988652      3477774444433  678889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|.|+.+++.+|++||+.++.+.+
T Consensus       177 ~vGD~~~Di~~a~~~G~~~~~v~~  200 (233)
T 3umb_A          177 FVSSNGWDACGATWHGFTTFWINR  200 (233)
T ss_dssp             EEESCHHHHHHHHHHTCEEEEECT
T ss_pred             EEeCCHHHHHHHHHcCCEEEEEcC
Confidence            999999999999999999987543

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.78  E-value=3.8e-19  Score=131.34  Aligned_cols=116  Identities=18%  Similarity=0.038  Sum_probs=92.1

Q ss_pred             CccEEEEecCCccccccccccccCCC-CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEI-PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS   99 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~-~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~   99 (149)
                      ++++++||+||||++....+...++. ..+.+...++|++|+++|++++++||++... +...++.+|+..+|.   ..+
T Consensus         7 ~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~-~~~~~~~lgl~~~~~---~~k   82 (180)
T 1k1e_A            7 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPI-LRRRIADLGIKLFFL---GKL   82 (180)
T ss_dssp             GCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHH-HHHHHHHHTCCEEEE---SCS
T ss_pred             CCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHH-HHHHHHHcCCceeec---CCC
Confidence            47999999999999853322211110 1245678899999999999999999999998 799999999988774   357


Q ss_pred             CChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          100 CCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       100 p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      |+|...-.+.  .++++++|+.+.|+.+++.++++||+.+++.
T Consensus        83 ~k~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~~~~~  125 (180)
T 1k1e_A           83 EKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVA  125 (180)
T ss_dssp             CHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECT
T ss_pred             CcHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCeEEeC
Confidence            7775544443  5688899999999999999999999988764

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=99.78  E-value=4.6e-19  Score=130.43  Aligned_cols=94  Identities=10%  Similarity=0.011  Sum_probs=78.7

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..+.|++.++|+.|+++| +++++||++... +...++.+|+..+|+.+.      ..||+|.....+.  .++++++|+
T Consensus        85 ~~~~~~~~~~l~~l~~~g-~~~i~s~~~~~~-~~~~l~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  162 (200)
T 3cnh_A           85 SQPRPEVLALARDLGQRY-RMYSLNNEGRDL-NEYRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAV  162 (200)
T ss_dssp             CCBCHHHHHHHHHHTTTS-EEEEEECCCHHH-HHHHHHHHTGGGTCSCEEEHHHHSCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCccHHHHHHHHHHcC-CEEEEeCCcHHH-HHHHHHhCCHHHhcceEEeecccCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence            457899999999999999 999999999888 689999999988887652      3577774443333  568889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +++|+++++.+|++||++++.+.+
T Consensus       163 ~vgD~~~Di~~a~~aG~~~~~~~~  186 (200)
T 3cnh_A          163 MVDDRLQNVQAARAVGMHAVQCVD  186 (200)
T ss_dssp             EEESCHHHHHHHHHTTCEEEECSC
T ss_pred             EeCCCHHHHHHHHHCCCEEEEECC
Confidence            999999999999999999987653

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=99.78  E-value=1.1e-18  Score=133.49  Aligned_cols=93  Identities=13%  Similarity=0.086  Sum_probs=78.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|+.|+  |++++++||++... +...++.+|+..+|+.+.      ..||+|.+...+.  .+++|++|+
T Consensus        92 ~~~~~~~~~~l~~l~--g~~~~i~t~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  168 (253)
T 1qq5_A           92 LTPYPDAAQCLAELA--PLKRAILSNGAPDM-LQALVANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVL  168 (253)
T ss_dssp             CCBCTTHHHHHHHHT--TSEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEE
T ss_pred             CCCCccHHHHHHHHc--CCCEEEEeCcCHHH-HHHHHHHCCchhhccEEEEccccCCCCCCHHHHHHHHHHcCCCHHHEE
Confidence            367899999999999  99999999999888 789999999998887652      3477774444443  567889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|.|+.++|.+|++||+.++.+.+
T Consensus       169 ~vGD~~~Di~~a~~aG~~~~~~~~  192 (253)
T 1qq5_A          169 FVSSNGFDVGGAKNFGFSVARVAR  192 (253)
T ss_dssp             EEESCHHHHHHHHHHTCEEEEECC
T ss_pred             EEeCChhhHHHHHHCCCEEEEECC
Confidence            999999999999999999987654

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=99.78  E-value=9.2e-19  Score=133.75  Aligned_cols=94  Identities=26%  Similarity=0.403  Sum_probs=79.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|++|+++|++++++||++... ++..++.+|+..+|+.+.      ..||+|.+...+.  .++++++|+
T Consensus       113 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  191 (243)
T 2hsz_A          113 SRLYPNVKETLEALKAQGYILAVVTNKPTKH-VQPILTAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQIL  191 (243)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGCSEEECTTTSSSCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEECCcHHH-HHHHHHHcCchheEEEEEecccCCCCCcCHHHHHHHHHHhCcChhhEE
Confidence            4677999999999999999999999999887 799999999988887652      3477775554444  567889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +++|+++++.+|++||+.++.+.
T Consensus       192 ~vGD~~~Di~~a~~aG~~~i~v~  214 (243)
T 2hsz_A          192 FVGDSQNDIFAAHSAGCAVVGLT  214 (243)
T ss_dssp             EEESSHHHHHHHHHHTCEEEEES
T ss_pred             EEcCCHHHHHHHHHCCCeEEEEc
Confidence            99999999999999999987653

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=99.77  E-value=7.8e-19  Score=131.60  Aligned_cols=90  Identities=21%  Similarity=0.103  Sum_probs=73.5

Q ss_pred             cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceEEE
Q 032013           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFILF  120 (149)
Q Consensus        49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l~~  120 (149)
                      ++||+.++|+.|+++|++++++||++.   +...++.+|+..+|+.+.      ..||+|.+...+.  .+++|++|++|
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~---~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~i~v  169 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN---APKILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAMLDVSPADCAAI  169 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT---HHHHHHHTTCTTTCSEECCC---------CCHHHHHHHHHTSCGGGEEEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh---HHHHHHHcCcHhhcCEEeeHhhCCCCCCChHHHHHHHHHcCCCHHHEEEE
Confidence            799999999999999999999999854   478899999999988752      3477775554444  67888999999


Q ss_pred             eehHhHHHHHHHhCCchhhhh
Q 032013          121 VDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       121 eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|++++|.+|++||+.++.+.
T Consensus       170 GDs~~Di~~a~~aG~~~~~~~  190 (233)
T 3nas_A          170 EDAEAGISAIKSAGMFAVGVG  190 (233)
T ss_dssp             ECSHHHHHHHHHTTCEEEECC
T ss_pred             eCCHHHHHHHHHcCCEEEEEC
Confidence            999999999999999988764

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=99.77  E-value=2.5e-19  Score=132.97  Aligned_cols=90  Identities=14%  Similarity=0.050  Sum_probs=77.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc----------------ccCCChhHHHHHH-
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV----------------RLSCCIMCIIFFL-  109 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~----------------~~~p~p~~~i~~~-  109 (149)
                      .++.|++.++|+.|+++|++++++||++... ++..++.+|+..+|+...                ..+|+|  .+|.. 
T Consensus        74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k~--~~~~~~  150 (217)
T 3m1y_A           74 LPLFEGALELVSALKEKNYKVVCFSGGFDLA-TNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKG--EMLLVL  150 (217)
T ss_dssp             CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHH-HHHHHHHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHHH--HHHHHH
T ss_pred             CcCCCCHHHHHHHHHHCCCEEEEEcCCchhH-HHHHHHHcCcchhccceeEEeCCEEEeeeccCCCCCCChH--HHHHHH
Confidence            5789999999999999999999999999888 799999999998887652                235555  55554 


Q ss_pred             ---hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          110 ---FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       110 ---~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                         .++++++|++|.||++++.+|++||+.+.+
T Consensus       151 ~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~  183 (217)
T 3m1y_A          151 QRLLNISKTNTLVVGDGANDLSMFKHAHIKIAF  183 (217)
T ss_dssp             HHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEE
T ss_pred             HHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEE
Confidence               578889999999999999999999998765

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=99.77  E-value=9.8e-19  Score=132.26  Aligned_cols=119  Identities=13%  Similarity=0.027  Sum_probs=92.2

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHH
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLH   84 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~   84 (149)
                      .++++++||+||||++...+. .......++||+.++|++|+++|++++|+||++.               .. +...++
T Consensus        29 ~~~k~i~~D~DGtl~~~~~y~-~~~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~  106 (218)
T 2o2x_A           29 PHLPALFLDRDGTINVDTDYP-SDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGR-VLELLR  106 (218)
T ss_dssp             SSCCCEEECSBTTTBCCCSCT-TCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHH-HHHHHH
T ss_pred             hcCCEEEEeCCCCcCCCCccc-CCcccCeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHH-HHHHHH
Confidence            457899999999999853221 1223357899999999999999999999999987               56 688899


Q ss_pred             HcCCC--CCccc--------------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCch-hhh
Q 032013           85 KLGIH--SMFVP--------------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDL-YVY  140 (149)
Q Consensus        85 ~~gl~--~~f~~--------------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~-~~~  140 (149)
                      .+|+.  .+|..              ....||+|.....+.  .++++++|+++.|+.++|.+|++||+++ +.+
T Consensus       107 ~~gl~~~~~~~~~~~~~g~~~~~~~~~~~~KP~~~~~~~~~~~~~i~~~~~~~VGD~~~Di~~a~~aG~~~~i~v  181 (218)
T 2o2x_A          107 EEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLV  181 (218)
T ss_dssp             HTTCCCSEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHHTCCGGGCEEEESSHHHHHHHHHTTCSEEEEE
T ss_pred             HcCCceeeEEEeecCCCCceeecccCCccCCCCHHHHHHHHHHcCCCHHHEEEEeCCHHHHHHHHHCCCCEeEEE
Confidence            99964  33322              134578885544443  5678899999999999999999999998 654

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=99.77  E-value=2.2e-19  Score=136.14  Aligned_cols=93  Identities=13%  Similarity=0.071  Sum_probs=76.8

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-ccCCChhHHHHHHhhCCCcceEEEeehHh
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-RLSCCIMCIIFFLFFFSISAFILFVDLFC  125 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-~~~p~p~~~i~~~~~~~~~~~l~~eDs~~  125 (149)
                      ..++||+.++|++|+++| +++|+||++... +...++.+|+.++|+... ...++|...-.+..+++|++|++++||++
T Consensus        95 ~~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~-~~~~l~~~gl~~~f~~~~~~~~~K~~~~~~~~~~~~~~~~~~vgDs~~  172 (231)
T 2p11_A           95 SRVYPGALNALRHLGARG-PTVILSDGDVVF-QPRKIARSGLWDEVEGRVLIYIHKELMLDQVMECYPARHYVMVDDKLR  172 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTS-CEEEEEECCSSH-HHHHHHHTTHHHHTTTCEEEESSGGGCHHHHHHHSCCSEEEEECSCHH
T ss_pred             CCcCccHHHHHHHHHhCC-CEEEEeCCCHHH-HHHHHHHcCcHHhcCeeEEecCChHHHHHHHHhcCCCceEEEEcCccc
Confidence            578999999999999999 999999999988 799999999998887653 23444522222234789999999999999


Q ss_pred             ---HHHHHHHhCCchhhhh
Q 032013          126 ---FMYAAAYVGCDLYVYK  141 (149)
Q Consensus       126 ---gi~aa~~ag~~~~~~~  141 (149)
                         ++.+|++|||+++.+.
T Consensus       173 d~~di~~A~~aG~~~i~v~  191 (231)
T 2p11_A          173 ILAAMKKAWGARLTTVFPR  191 (231)
T ss_dssp             HHHHHHHHHGGGEEEEEEC
T ss_pred             hhhhhHHHHHcCCeEEEeC
Confidence               9999999999988653

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=99.77  E-value=7.2e-19  Score=129.87  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=76.8

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHHhhCCCcceEEEe
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFLFFFSISAFILFV  121 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~~~~~~~~~l~~e  121 (149)
                      .++||+.+ |+.|+++ ++++++||++... ++..++.+|+..+|+.+.      ..||+|.+...+...+++++|++++
T Consensus        74 ~~~~~~~~-l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~vG  150 (201)
T 2w43_A           74 KAYEDTKY-LKEISEI-AEVYALSNGSINE-VKQHLERNGLLRYFKGIFSAESVKEYKPSPKVYKYFLDSIGAKEAFLVS  150 (201)
T ss_dssp             EECGGGGG-HHHHHHH-SEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGGTCCTTCHHHHHHHHHHHTCSCCEEEE
T ss_pred             ccCCChHH-HHHHHhC-CeEEEEeCcCHHH-HHHHHHHCCcHHhCcEEEehhhcCCCCCCHHHHHHHHHhcCCCcEEEEe
Confidence            67899999 9999999 9999999999887 689999999998887642      3477775555444444499999999


Q ss_pred             ehHhHHHHHHHhCCchhhhhh
Q 032013          122 DLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       122 Ds~~gi~aa~~ag~~~~~~~~  142 (149)
                      |+++++.+|++||+.++.+.+
T Consensus       151 D~~~Di~~a~~aG~~~~~~~~  171 (201)
T 2w43_A          151 SNAFDVIGAKNAGMRSIFVNR  171 (201)
T ss_dssp             SCHHHHHHHHHTTCEEEEECS
T ss_pred             CCHHHhHHHHHCCCEEEEECC
Confidence            999999999999999887543

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=8.1e-19  Score=130.19  Aligned_cols=93  Identities=19%  Similarity=0.188  Sum_probs=80.7

Q ss_pred             CccCccHHHHHHHHHHCC-ceEEEEeCCCchHHHHHHHHHcCCCCCccccc-ccCCChhHHHHHH--hhCCCcceEEEee
Q 032013           47 PYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-RLSCCIMCIIFFL--FFFSISAFILFVD  122 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-~~~p~p~~~i~~~--~~~~~~~~l~~eD  122 (149)
                      ..++|++.++|+.|+++| ++++++||++... +...++.+++..+|+.+. ..+|+|.+...+.  .+++|++|++|.|
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~-~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iGD  182 (234)
T 3ddh_A          104 IELLPGVKETLKTLKETGKYKLVVATKGDLLD-QENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMVGN  182 (234)
T ss_dssp             CCBCTTHHHHHHHHHHHCCCEEEEEEESCHHH-HHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEEES
T ss_pred             CCcCccHHHHHHHHHhCCCeEEEEEeCCchHH-HHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCcceEEEECC
Confidence            468999999999999999 9999999998887 689999999999998764 4578885554444  6788899999999


Q ss_pred             hH-hHHHHHHHhCCchhhh
Q 032013          123 LF-CFMYAAAYVGCDLYVY  140 (149)
Q Consensus       123 s~-~gi~aa~~ag~~~~~~  140 (149)
                      ++ |++.+|++||+.++.+
T Consensus       183 ~~~~Di~~a~~aG~~~v~v  201 (234)
T 3ddh_A          183 SFKSDIQPVLSLGGYGVHI  201 (234)
T ss_dssp             CCCCCCHHHHHHTCEEEEC
T ss_pred             CcHHHhHHHHHCCCeEEEe
Confidence            97 9999999999999876

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=99.77  E-value=1.3e-18  Score=129.81  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=88.4

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCc-cHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS   99 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~p-g~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~   99 (149)
                      .+++|+||+||||+|+...+....+....+. .-..+|++|+++|++++|+||++... ++..++.+|+..+|+..   +
T Consensus        18 ~ik~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~lgl~~~f~~~---~   93 (189)
T 3mn1_A           18 AIKLAVFDVDGVLTDGRLYFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRKTAI-VERRAKSLGIEHLFQGR---E   93 (189)
T ss_dssp             TCCEEEECSTTTTSCSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHHHHHTCSEEECSC---S
T ss_pred             hCCEEEEcCCCCcCCccEeeccCCcEeeeeccccHHHHHHHHHCCCEEEEEECcChHH-HHHHHHHcCCHHHhcCc---C
Confidence            4899999999999997443322221111110 01138999999999999999999998 79999999999988875   6


Q ss_pred             CChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          100 CCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       100 p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      ++|.....+.  .++++++|++++|+.|++.++++||+.+.+
T Consensus        94 ~K~~~~~~~~~~~g~~~~~~~~vGD~~nDi~~~~~ag~~~~~  135 (189)
T 3mn1_A           94 DKLVVLDKLLAELQLGYEQVAYLGDDLPDLPVIRRVGLGMAV  135 (189)
T ss_dssp             CHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEC
T ss_pred             ChHHHHHHHHHHcCCChhHEEEECCCHHHHHHHHHCCCeEEe
Confidence            6664444443  567789999999999999999999988765

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=99.76  E-value=9.8e-19  Score=132.03  Aligned_cols=94  Identities=23%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCC-Ccce
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFS-ISAF  117 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~-~~~~  117 (149)
                      ..++|++.++|++|+++|++++++||++... ++..++.+|+..+|+.+.      ..||+|.+...+.  .+++ +++|
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~  187 (240)
T 3sd7_A          109 NKIYENMKEILEMLYKNGKILLVATSKPTVF-AETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKV  187 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEECTTSCCCCHHHHHHHHHHHHTCCCGGGE
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHHcCcHhhEEEEEeccccCCCCCCHHHHHHHHHHcCCCCCCcE
Confidence            5689999999999999999999999998888 799999999998888652      2356664433333  6688 9999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      ++|.|+++++.+|++||++++.+.
T Consensus       188 i~vGD~~~Di~~a~~aG~~~i~v~  211 (240)
T 3sd7_A          188 IMVGDRKYDIIGAKKIGIDSIGVL  211 (240)
T ss_dssp             EEEESSHHHHHHHHHHTCEEEEES
T ss_pred             EEECCCHHHHHHHHHCCCCEEEEe
Confidence            999999999999999999888654

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=99.76  E-value=5.7e-19  Score=133.81  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=77.9

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceEE
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFIL  119 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l~  119 (149)
                      .++|++.++|++|+++|++++++||++... +...++.+|+..+|+.+.      ..||+|.....+.  .+++|++|++
T Consensus        94 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~~i~  172 (241)
T 2hoq_A           94 REVPGARKVLIRLKELGYELGIITDGNPVK-QWEKILRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALM  172 (241)
T ss_dssp             CBCTTHHHHHHHHHHHTCEEEEEECSCHHH-HHHHHHHTTCGGGCSEEEEGGGGTCCTTCHHHHHHHHHHHTCCGGGEEE
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEECCCchh-HHHHHHHcCcHhhccEEEEeCCCCCCCCCHHHHHHHHHHcCCCcccEEE
Confidence            478999999999999999999999998887 689999999999887652      3477774444433  5688899999


Q ss_pred             EeehH-hHHHHHHHhCCchhhh
Q 032013          120 FVDLF-CFMYAAAYVGCDLYVY  140 (149)
Q Consensus       120 ~eDs~-~gi~aa~~ag~~~~~~  140 (149)
                      |+|++ |++.+|++||+.++.+
T Consensus       173 iGD~~~~Di~~a~~aG~~~~~v  194 (241)
T 2hoq_A          173 VGDRLYSDIYGAKRVGMKTVWF  194 (241)
T ss_dssp             EESCTTTTHHHHHHTTCEEEEE
T ss_pred             ECCCchHhHHHHHHCCCEEEEE
Confidence            99998 9999999999998875

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=99.76  E-value=5.8e-19  Score=134.86  Aligned_cols=95  Identities=17%  Similarity=0.029  Sum_probs=80.1

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc-c------c-ccCCChhHHHHHH--hhCCCc
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP-M------V-RLSCCIMCIIFFL--FFFSIS  115 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~-~------~-~~~p~p~~~i~~~--~~~~~~  115 (149)
                      ...++|++.++|++|+++|++++++||++... ++..++.+|+..+|+. +      . ..||+|.+...+.  .+++++
T Consensus       108 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~i~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~  186 (259)
T 4eek_A          108 GVTAIEGAAETLRALRAAGVPFAIGSNSERGR-LHLKLRVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPE  186 (259)
T ss_dssp             TCEECTTHHHHHHHHHHHTCCEEEECSSCHHH-HHHHHHHTTCHHHHCSCEECGGGGTTCCTTSSHHHHHHHHHTTCCGG
T ss_pred             cCCcCccHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHhcChHhhccceEEeHhhcCcCCCCChHHHHHHHHHcCCCHH
Confidence            46789999999999999999999999999888 7999999999888876 3      2 4577775444443  567789


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|++|.|+++++.+|++||+.++.+.
T Consensus       187 ~~i~iGD~~~Di~~a~~aG~~~i~v~  212 (259)
T 4eek_A          187 RCVVIEDSVTGGAAGLAAGATLWGLL  212 (259)
T ss_dssp             GEEEEESSHHHHHHHHHHTCEEEEEC
T ss_pred             HEEEEcCCHHHHHHHHHCCCEEEEEc
Confidence            99999999999999999999987664

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=99.76  E-value=3.6e-18  Score=132.51  Aligned_cols=91  Identities=12%  Similarity=0.008  Sum_probs=77.0

Q ss_pred             CccCccHHHHHHHHHHCCc--eEEEEeCCCchHHHHHHHHHcCCCCCccccc----------ccCCChhHHHHHH--hhC
Q 032013           47 PYLYPHAKGILEALKEKGI--HVAVASRSPAPDIAKTFLHKLGIHSMFVPMV----------RLSCCIMCIIFFL--FFF  112 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi--~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~----------~~~p~p~~~i~~~--~~~  112 (149)
                      ..++||+.++|+.|+++|+  +++++||+.... +...++.+|+..+|+.+.          ..||+|.+...+.  .++
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~-~~~~l~~~gl~~~fd~v~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi  219 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNH-AIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGL  219 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHH-HHHHHHHHTCTTSCSEEECCCCSSCSSCCCTTSHHHHHHHHHHHTC
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCChHH-HHHHHHhCCcccccceEEEeccCCCcccCCCcCHHHHHHHHHHcCC
Confidence            5689999999999999999  999999999888 799999999999988753          1266664444443  678


Q ss_pred             CC-cceEEEeehHhHHHHHHHhCCchh
Q 032013          113 SI-SAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus       113 ~~-~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                      ++ ++|++|.|+++++.+|++||+.+.
T Consensus       220 ~~~~~~i~vGD~~~Di~~a~~aG~~~~  246 (282)
T 3nuq_A          220 ARYENAYFIDDSGKNIETGIKLGMKTC  246 (282)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHHTCSEE
T ss_pred             CCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence            88 999999999999999999999443

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=99.76  E-value=9.4e-19  Score=130.78  Aligned_cols=93  Identities=14%  Similarity=0.048  Sum_probs=77.4

Q ss_pred             CccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCCCCCccccc-----ccCCChhHHHHHH----hh--CCC
Q 032013           47 PYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-----RLSCCIMCIIFFL----FF--FSI  114 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-----~~~p~p~~~i~~~----~~--~~~  114 (149)
                      ..++||+.++|++|+++ |++++|+||++... +...++.+|+..+|+...     ..+++|.+.+|..    .+  ++|
T Consensus        92 ~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~lg~~~~~  170 (234)
T 2hcf_A           92 ITLLEGVRELLDALSSRSDVLLGLLTGNFEAS-GRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERARRMTGANYSP  170 (234)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHH-HHHHHHTTTCSTTCSCEECTTTCSSGGGHHHHHHHHHHHHHCCCCCG
T ss_pred             CCcCCCHHHHHHHHHhCCCceEEEEcCCcHHH-HHHHHHHCCchhhcCcceecCCCcCccchHHHHHHHHHHHhCCCCCc
Confidence            45789999999999999 99999999999887 789999999999987532     2244455566554    45  788


Q ss_pred             cceEEEeehHhHHHHHHHhCCchhhh
Q 032013          115 SAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       115 ~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++|++|+||+|++.+|++||++++.+
T Consensus       171 ~~~i~iGD~~~Di~~a~~aG~~~i~v  196 (234)
T 2hcf_A          171 SQIVIIGDTEHDIRCARELDARSIAV  196 (234)
T ss_dssp             GGEEEEESSHHHHHHHHTTTCEEEEE
T ss_pred             ccEEEECCCHHHHHHHHHCCCcEEEE
Confidence            99999999999999999999997764

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=99.76  E-value=2.1e-19  Score=136.73  Aligned_cols=95  Identities=18%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH-cCCCCCcccc--------cccCCChhHHHHHH--hhCCC
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPM--------VRLSCCIMCIIFFL--FFFSI  114 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~gl~~~f~~~--------~~~~p~p~~~i~~~--~~~~~  114 (149)
                      ...+.|++.++|++|+++|++++++||++... +...+.. .++..+|+.+        ...||+|.++..+.  .++++
T Consensus       110 ~~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~-~~~~l~~~~~l~~~f~~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~  188 (250)
T 3l5k_A          110 TAALMPGAEKLIIHLRKHGIPFALATSSRSAS-FDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPP  188 (250)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCCEEEECSCCHHH-HHHHTTTCHHHHTTSSCEECTTCTTCCSCTTSTHHHHHHHHTSSSCC
T ss_pred             cCCCCCCHHHHHHHHHhCCCcEEEEeCCCHHH-HHHHHHhccCHHhheeeEEecchhhccCCCCChHHHHHHHHHcCCCC
Confidence            35689999999999999999999999998776 5665544 4676666643        23477774444444  55666


Q ss_pred             --cceEEEeehHhHHHHHHHhCCchhhhh
Q 032013          115 --SAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       115 --~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                        ++|++|+|+.+++.+|++||+.++.+.
T Consensus       189 ~~~~~i~iGD~~~Di~~a~~aG~~~i~v~  217 (250)
T 3l5k_A          189 AMEKCLVFEDAPNGVEAALAAGMQVVMVP  217 (250)
T ss_dssp             CGGGEEEEESSHHHHHHHHHTTCEEEECC
T ss_pred             CcceEEEEeCCHHHHHHHHHcCCEEEEEc
Confidence              999999999999999999999988754

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=99.75  E-value=1.3e-18  Score=134.99  Aligned_cols=93  Identities=10%  Similarity=0.048  Sum_probs=76.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|++|++ +++++|+||++... +...++.+|+..+|+.+.      ..||+|.++..+.  .+++|++|+
T Consensus       120 ~~~~~g~~~~L~~L~~-~~~l~i~Tn~~~~~-~~~~l~~~gl~~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~  197 (260)
T 2gfh_A          120 MILADDVKAMLTELRK-EVRLLLLTNGDRQT-QREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV  197 (260)
T ss_dssp             CCCCHHHHHHHHHHHT-TSEEEEEECSCHHH-HHHHHHHHTCGGGCSEEEEGGGSSSCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CCCCcCHHHHHHHHHc-CCcEEEEECcChHH-HHHHHHhcCHHhhhheEEecCCCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence            3678999999999998 59999999999888 689999999999998752      3477774433333  568889999


Q ss_pred             EEeeh-HhHHHHHHHhCC-chhhhh
Q 032013          119 LFVDL-FCFMYAAAYVGC-DLYVYK  141 (149)
Q Consensus       119 ~~eDs-~~gi~aa~~ag~-~~~~~~  141 (149)
                      +++|| .++|++|++||| .++.+.
T Consensus       198 ~vGDs~~~Di~~A~~aG~~~~i~v~  222 (260)
T 2gfh_A          198 MVGDTLETDIQGGLNAGLKATVWIN  222 (260)
T ss_dssp             EEESCTTTHHHHHHHTTCSEEEEEC
T ss_pred             EECCCchhhHHHHHHCCCceEEEEc
Confidence            99995 999999999999 676543

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=99.75  E-value=2.5e-18  Score=128.53  Aligned_cols=94  Identities=12%  Similarity=0.136  Sum_probs=79.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hh-CCCcce
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FF-FSISAF  117 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~-~~~~~~  117 (149)
                      ..++|++.++|+.|+++ ++++++||++... +...++.+|+..+|+.+.      ..||+|.+...+.  .+ ++|++|
T Consensus       102 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~  179 (238)
T 3ed5_A          102 HQLIDGAFDLISNLQQQ-FDLYIVTNGVSHT-QYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHT  179 (238)
T ss_dssp             CCBCTTHHHHHHHHHTT-SEEEEEECSCHHH-HHHHHHHTTCGGGCSEEEEGGGTTSCTTCHHHHHHHHHTSTTCCGGGE
T ss_pred             CCCCccHHHHHHHHHhc-CeEEEEeCCCHHH-HHHHHHHcChHhhhheEEEecccCCCCCChHHHHHHHHHcCCCChhHe
Confidence            56899999999999999 9999999999888 689999999999887652      4577775554444  55 678999


Q ss_pred             EEEeehH-hHHHHHHHhCCchhhhhh
Q 032013          118 ILFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       118 l~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      ++|.|++ +++.+|++||++++.+.+
T Consensus       180 i~vGD~~~~Di~~a~~aG~~~i~~~~  205 (238)
T 3ed5_A          180 LIIGDSLTADIKGGQLAGLDTCWMNP  205 (238)
T ss_dssp             EEEESCTTTTHHHHHHTTCEEEEECT
T ss_pred             EEECCCcHHHHHHHHHCCCEEEEECC
Confidence            9999998 999999999999887643

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=99.75  E-value=2.8e-18  Score=132.48  Aligned_cols=94  Identities=16%  Similarity=0.097  Sum_probs=78.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++||+.++|++|+++|++++|+||++. . +...++.+|+..+|+.+.      ..||+|..+..+.  .+++|++|+
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~-~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~~~  182 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFDR-R-LEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAHMEPVVAA  182 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCCT-T-HHHHHHHTTCGGGCSCEEEHHHHSSCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCcH-H-HHHHHHhCCcHHhhhEEEeecccCCCCCCHHHHHHHHHHcCCCHHHEE
Confidence            46899999999999999999999999876 4 588999999999988652      3467774433333  678889999


Q ss_pred             EEeehH-hHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      +|.|++ ++|.+|++|||.++.+.+
T Consensus       183 ~vGD~~~~Di~~a~~aG~~~i~~~~  207 (263)
T 3k1z_A          183 HVGDNYLCDYQGPRAVGMHSFLVVG  207 (263)
T ss_dssp             EEESCHHHHTHHHHTTTCEEEEECC
T ss_pred             EECCCcHHHHHHHHHCCCEEEEEcC
Confidence            999997 999999999999987654

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=99.75  E-value=3.4e-18  Score=126.19  Aligned_cols=114  Identities=16%  Similarity=0.024  Sum_probs=86.3

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHH--HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK--GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR   97 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~--e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~   97 (149)
                      .++++++||+||||+|....+....+....+ +..  .+|++|+++|++++|+||++... ++..++.+|+. +|..   
T Consensus        10 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~-~~~~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~lgi~-~~~~---   83 (176)
T 3mmz_A           10 EDIDAVVLDFDGTQTDDRVLIDSDGREFVSV-HRGDGLGIAALRKSGLTMLILSTEQNPV-VAARARKLKIP-VLHG---   83 (176)
T ss_dssp             GGCSEEEECCTTTTSCSCCEECTTCCEEEEE-EHHHHHHHHHHHHTTCEEEEEESSCCHH-HHHHHHHHTCC-EEES---
T ss_pred             hcCCEEEEeCCCCcCcCCEeecCCccHhHhc-ccccHHHHHHHHHCCCeEEEEECcChHH-HHHHHHHcCCe-eEeC---
Confidence            3479999999999999533322211111111 111  26999999999999999999998 79999999998 5544   


Q ss_pred             cCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           98 LSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        98 ~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .+|+|.....+.  .++++++|+++.|+.|++.++++||+.+.+
T Consensus        84 ~~~k~~~l~~~~~~~~~~~~~~~~vGD~~nD~~~~~~ag~~v~~  127 (176)
T 3mmz_A           84 IDRKDLALKQWCEEQGIAPERVLYVGNDVNDLPCFALVGWPVAV  127 (176)
T ss_dssp             CSCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEC
T ss_pred             CCChHHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHCCCeEEC
Confidence            377776555554  567789999999999999999999988766

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=99.75  E-value=3.3e-18  Score=127.40  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=77.9

Q ss_pred             cCccHHHHHHHHHHCCceEEEEeCCC---chHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           49 LYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~---~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ++|++.++|+.|+++|++++++||+.   ... +...++.+++..+|+.+.      ..||+|.+...+.  .+++|++|
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  178 (235)
T 2om6_A          100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSY-TRLLLERFGLMEFIDKTFFADEVLSYKPRKEMFEKVLNSFEVKPEES  178 (235)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEECCCSSCHHH-HHHHHHHTTCGGGCSEEEEHHHHTCCTTCHHHHHHHHHHTTCCGGGE
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCcccchhH-HHHHHHhCCcHHHhhhheeccccCCCCCCHHHHHHHHHHcCCCccce
Confidence            47899999999999999999999998   777 688999999998887652      3477775444443  56778999


Q ss_pred             EEEeehH-hHHHHHHHhCCchhhhhh
Q 032013          118 ILFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       118 l~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      ++|+|++ |++.+|++||+.++.+.+
T Consensus       179 ~~iGD~~~nDi~~a~~aG~~~~~~~~  204 (235)
T 2om6_A          179 LHIGDTYAEDYQGARKVGMWAVWINQ  204 (235)
T ss_dssp             EEEESCTTTTHHHHHHTTSEEEEECT
T ss_pred             EEECCChHHHHHHHHHCCCEEEEECC
Confidence            9999999 999999999999887543

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=99.75  E-value=2.2e-18  Score=131.49  Aligned_cols=115  Identities=17%  Similarity=0.043  Sum_probs=89.8

Q ss_pred             CCccEEEEecCCccccccccccccCCCCc---cCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPY---LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~---~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      .++++|+||+||||+|+...+....+...   +.++  .+|++|+++|++++|+||++... ++.+++.+|+..+|... 
T Consensus        47 ~~ik~viFDlDGTL~Ds~~~~~~~~~~~~~~~~~d~--~~L~~L~~~G~~l~I~T~~~~~~-~~~~l~~lgi~~~f~~~-  122 (211)
T 3ij5_A           47 ANIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDG--YGIRCLITSDIDVAIITGRRAKL-LEDRANTLGITHLYQGQ-  122 (211)
T ss_dssp             TTCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHH--HHHHHHHHTTCEEEEECSSCCHH-HHHHHHHHTCCEEECSC-
T ss_pred             hCCCEEEEeCCCCEECCHHHHhhhhHHHHHhccchH--HHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCchhhccc-
Confidence            34799999999999997543322221111   1122  27999999999999999999998 79999999999888765 


Q ss_pred             ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           97 RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        97 ~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                        +|+|.....+.  .++++++|++++|+.|++.++++||+.+.+.
T Consensus       123 --k~K~~~l~~~~~~lg~~~~~~~~vGDs~nDi~~~~~ag~~~a~~  166 (211)
T 3ij5_A          123 --SDKLVAYHELLATLQCQPEQVAYIGDDLIDWPVMAQVGLSVAVA  166 (211)
T ss_dssp             --SSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSEEEECT
T ss_pred             --CChHHHHHHHHHHcCcCcceEEEEcCCHHHHHHHHHCCCEEEeC
Confidence              77775554444  5677899999999999999999999887664

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=99.75  E-value=1.3e-18  Score=131.11  Aligned_cols=93  Identities=14%  Similarity=-0.042  Sum_probs=74.8

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH------HHcCCCCCcccc------cccCCChhHHHHHH--hhCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL------HKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFS  113 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l------~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~  113 (149)
                      .+.||+.++|+.|+++ ++++|+||++... +...+      +.+|+..+|+.+      ...||+|..+..+.  .+++
T Consensus       112 ~~~~~~~~~l~~l~~~-~~~~i~Sn~~~~~-~~~~~~~l~~~~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~g~~  189 (229)
T 4dcc_A          112 DIPTYKLDLLLKLREK-YVVYLLSNTNDIH-WKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGID  189 (229)
T ss_dssp             CCCHHHHHHHHHHTTT-SEEEEEECCCHHH-HHHHHHHTSCBTTBCHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCC
T ss_pred             hccHHHHHHHHHHHhc-CcEEEEECCChHH-HHHHHhhhhhhccCCHHHhCCEEEeecccCCCCCCHHHHHHHHHHcCCC
Confidence            4679999999999999 9999999999887 56444      667887778765      23477774433333  6788


Q ss_pred             CcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          114 ISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       114 ~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      |++|++|+|++++|.+|++||++++.+.+
T Consensus       190 ~~~~~~vGD~~~Di~~a~~aG~~~i~v~~  218 (229)
T 4dcc_A          190 PKETFFIDDSEINCKVAQELGISTYTPKA  218 (229)
T ss_dssp             GGGEEEECSCHHHHHHHHHTTCEEECCCT
T ss_pred             HHHeEEECCCHHHHHHHHHcCCEEEEECC
Confidence            89999999999999999999999987754

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=99.75  E-value=1.1e-18  Score=129.16  Aligned_cols=94  Identities=10%  Similarity=0.073  Sum_probs=79.1

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...+.|++.++|+.|+++ ++++++||++... ++..++.+|+..+|+.+.      ..||+|.+...+.  .++++++|
T Consensus        81 ~~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~  158 (209)
T 2hdo_A           81 QIELYPGITSLFEQLPSE-LRLGIVTSQRRNE-LESGMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNA  158 (209)
T ss_dssp             GCEECTTHHHHHHHSCTT-SEEEEECSSCHHH-HHHHHTTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHHTTCCGGGE
T ss_pred             cCCcCCCHHHHHHHHHhc-CcEEEEeCCCHHH-HHHHHHHcChHhhccEEEecCcCCCCCCCcHHHHHHHHHcCCCcccE
Confidence            357889999999999999 9999999999887 689999999988887652      3477785554444  56778999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      ++++|+.+++.+|++||+.++.+.
T Consensus       159 i~vGD~~~Di~~a~~aG~~~~~~~  182 (209)
T 2hdo_A          159 LFIGDSVSDEQTAQAANVDFGLAV  182 (209)
T ss_dssp             EEEESSHHHHHHHHHHTCEEEEEG
T ss_pred             EEECCChhhHHHHHHcCCeEEEEc
Confidence            999999999999999999988654

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=99.75  E-value=5.4e-18  Score=123.33  Aligned_cols=93  Identities=17%  Similarity=0.204  Sum_probs=76.0

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHHhhCCCcceEEEe
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFLFFFSISAFILFV  121 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~~~~~~~~~l~~e  121 (149)
                      .+.|++.++|+.|+++|++++++||++. . +...++.+++..+|+...      ..+|+|.....+...++.++|++|+
T Consensus        82 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~-~-~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~iG  159 (190)
T 2fi1_A           82 ILFEGVSDLLEDISNQGGRHFLVSHRND-Q-VLEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISSGLVIG  159 (190)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCT-H-HHHHHHHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCSSEEEEE
T ss_pred             ccCcCHHHHHHHHHHCCCcEEEEECCcH-H-HHHHHHHcCCHhheeeeeeccccCCCCCCHHHHHHHHHHcCCCeEEEEc
Confidence            3889999999999999999999999864 5 688999999988887542      3477775555555444444999999


Q ss_pred             ehHhHHHHHHHhCCchhhhhh
Q 032013          122 DLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       122 Ds~~gi~aa~~ag~~~~~~~~  142 (149)
                      |++|++.+|++||+.++.+.+
T Consensus       160 D~~~Di~~a~~aG~~~~~~~~  180 (190)
T 2fi1_A          160 DRPIDIEAGQAAGLDTHLFTS  180 (190)
T ss_dssp             SSHHHHHHHHHTTCEEEECSC
T ss_pred             CCHHHHHHHHHcCCeEEEECC
Confidence            999999999999999887643

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=99.75  E-value=1.9e-19  Score=136.87  Aligned_cols=117  Identities=18%  Similarity=0.043  Sum_probs=82.1

Q ss_pred             CccEEEEecCCcccccccccc-------ccC------------------CCCccCccHHHHHHHHHHCCceEEEEeCCCc
Q 032013           21 LPRLVVFDLDYTLWPFYCECC-------YED------------------EIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~-------~~~------------------~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~   75 (149)
                      ++++|+||+||||+|+...+.       +..                  ....+.|++.++|++|+++|++++|+||++.
T Consensus        36 ~~kaviFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~L~~~G~~l~ivTn~~~  115 (211)
T 2b82_A           36 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSP  115 (211)
T ss_dssp             CCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCC
T ss_pred             CCCEEEEcCCCCCCcCcHHHHHHHHHhhHHHHHHhhhHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence            489999999999999532110       000                  0113567999999999999999999999986


Q ss_pred             hHHHHHHHHHcCCCCCccc---------ccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           76 PDIAKTFLHKLGIHSMFVP---------MVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        76 ~~i~~~~l~~~gl~~~f~~---------~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      .. +...++.  +.++|+.         ....||+|.....+...++.  |++++||+++|++|++|||+++.+.+
T Consensus       116 ~~-~~~~l~~--l~~~f~~i~~~~~~~~~~~~KP~p~~~~~~~~~~g~--~l~VGDs~~Di~aA~~aG~~~i~v~~  186 (211)
T 2b82_A          116 TK-TETVSKT--LADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNI--RIFYGDSDNDITAARDVGARGIRILR  186 (211)
T ss_dssp             CS-SCCHHHH--HHHHTTCCTTTBCCCEECCCCTTCCCSHHHHHHTTE--EEEEESSHHHHHHHHHTTCEEEECCC
T ss_pred             HH-HHHHHHH--HHHhcCccccccchhhhcCCCCCHHHHHHHHHHCCC--EEEEECCHHHHHHHHHCCCeEEEEec
Confidence            54 3444443  2222222         22457777554444455665  99999999999999999999987643

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=99.75  E-value=1e-18  Score=129.35  Aligned_cols=92  Identities=9%  Similarity=0.017  Sum_probs=76.6

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH------cCCCCCccccc------ccCCChhHHHHHH--hhCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK------LGIHSMFVPMV------RLSCCIMCIIFFL--FFFS  113 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~------~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~  113 (149)
                      .++|++.++|+.|++ |++++++||++... +...++.      +|+..+|+.+.      ..||+|.....+.  .+++
T Consensus        89 ~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~-~~~~~~~l~~~~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~  166 (211)
T 2i6x_A           89 EISAEKFDYIDSLRP-DYRLFLLSNTNPYV-LDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMK  166 (211)
T ss_dssp             EECHHHHHHHHHHTT-TSEEEEEECCCHHH-HHHHTSTTSSTTCCCGGGGSSEEEEHHHHTCCTTSHHHHHHHHHHHCCC
T ss_pred             ccChHHHHHHHHHHc-CCeEEEEeCCCHHH-HHHHHhhhccccccCHHHHcCeEEeecccCCCCCCHHHHHHHHHHhCCC
Confidence            578999999999999 99999999998887 6888888      79888887652      3477774443333  5688


Q ss_pred             CcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013          114 ISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       114 ~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++|++|+|+++++.+|++||+.++.+.
T Consensus       167 ~~~~~~igD~~~Di~~a~~aG~~~~~~~  194 (211)
T 2i6x_A          167 PEETLFIDDGPANVATAERLGFHTYCPD  194 (211)
T ss_dssp             GGGEEEECSCHHHHHHHHHTTCEEECCC
T ss_pred             hHHeEEeCCCHHHHHHHHHcCCEEEEEC
Confidence            8999999999999999999999998764

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=99.75  E-value=4.9e-18  Score=125.62  Aligned_cols=92  Identities=18%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..+.|++.++|+.|+++|++++++||+  .. +...++.+++..+|+...      ..||+|.+...+.  .+++|++|+
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~-~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~i  166 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASAS--KN-GPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESI  166 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCC--TT-HHHHHHHTTCGGGCSEECCTTTSSSCTTSSHHHHHHHHHTTCCGGGEE
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCc--HH-HHHHHHHcChHHHcceEeccccCCCCCCChHHHHHHHHHcCCChhHeE
Confidence            457899999999999999999999998  44 578889999988887652      3477775555544  567789999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|+|++|++.+|++||+.++.+.
T Consensus       167 ~iGD~~nDi~~a~~aG~~~~~~~  189 (221)
T 2wf7_A          167 GLEDSQAGIQAIKDSGALPIGVG  189 (221)
T ss_dssp             EEESSHHHHHHHHHHTCEEEEES
T ss_pred             EEeCCHHHHHHHHHCCCEEEEEC
Confidence            99999999999999999988753

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=99.74  E-value=1e-18  Score=143.94  Aligned_cols=95  Identities=15%  Similarity=0.106  Sum_probs=72.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCC--CchHHHHHHHHHc--CCCCCccccc------ccCCChhHHHHHH--hhCCC
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRS--PAPDIAKTFLHKL--GIHSMFVPMV------RLSCCIMCIIFFL--FFFSI  114 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~--~~~~i~~~~l~~~--gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~  114 (149)
                      ..++||+.++|++|+++|++++|+||+  .... ....+...  ++..+|+.+.      ..||+|..+..+.  .+++|
T Consensus        99 ~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~-~~~~~~~~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~lg~~p  177 (555)
T 3i28_A           99 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRA-ERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASP  177 (555)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCST-THHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCCG
T ss_pred             cCcChhHHHHHHHHHHCCCEEEEEeCCCccccc-hhhHHHHHhhhhhhheeEEEeccccCCCCCCHHHHHHHHHHcCCCh
Confidence            368899999999999999999999998  2222 12333333  6667787652      3477774443333  67888


Q ss_pred             cceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          115 SAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       115 ~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      ++|++++||.++|.+|++|||+++.+.+
T Consensus       178 ~~~~~v~D~~~di~~a~~aG~~~~~~~~  205 (555)
T 3i28_A          178 SEVVFLDDIGANLKPARDLGMVTILVQD  205 (555)
T ss_dssp             GGEEEEESCHHHHHHHHHHTCEEEECSS
T ss_pred             hHEEEECCcHHHHHHHHHcCCEEEEECC
Confidence            9999999999999999999999998754

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=99.74  E-value=9.6e-18  Score=128.19  Aligned_cols=94  Identities=14%  Similarity=-0.041  Sum_probs=78.6

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC-cccc------cccCCChhHHHHHH--hhCCC-cc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM-FVPM------VRLSCCIMCIIFFL--FFFSI-SA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~-f~~~------~~~~p~p~~~i~~~--~~~~~-~~  116 (149)
                      ..++||+.++|+.|+++|++++++||++... +...++.+++..+ |+.+      ...||+|.+...+.  .++++ ++
T Consensus       110 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  188 (277)
T 3iru_A          110 SQLIPGWKEVFDKLIAQGIKVGGNTGYGPGM-MAPALIAAKEQGYTPASTVFATDVVRGRPFPDMALKVALELEVGHVNG  188 (277)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHHHTTCCCSEEECGGGSSSCTTSSHHHHHHHHHHTCSCGGG
T ss_pred             CccCcCHHHHHHHHHHcCCeEEEEeCCchHH-HHHHHHhcCcccCCCceEecHHhcCCCCCCHHHHHHHHHHcCCCCCcc
Confidence            4688999999999999999999999999887 6889999888777 6654      23477775544444  67888 99


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++|.|++++|.+|++||++++.+.
T Consensus       189 ~i~vGD~~~Di~~a~~aG~~~v~v~  213 (277)
T 3iru_A          189 CIKVDDTLPGIEEGLRAGMWTVGVS  213 (277)
T ss_dssp             EEEEESSHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEcCCHHHHHHHHHCCCeEEEEe
Confidence            9999999999999999999987653

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.74  E-value=6.5e-18  Score=127.34  Aligned_cols=116  Identities=13%  Similarity=0.020  Sum_probs=90.3

Q ss_pred             CccEEEEecCCccccccccccccCCC-CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEI-PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS   99 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~-~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~   99 (149)
                      .+++|+||+||||+++...+....+. ....+.....|++|+++|++++|+||++... ++.+++.+|+..+|...   +
T Consensus        24 ~ik~vifD~DGtL~d~~~~~~~~~~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~-~~~~l~~lgi~~~~~~~---k   99 (195)
T 3n07_A           24 QIKLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQI-VENRMKALGISLIYQGQ---D   99 (195)
T ss_dssp             TCCEEEECSTTTTSCSCCEECTTSCEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHH-HHHHHHHTTCCEEECSC---S
T ss_pred             CCCEEEEcCCCCcCCCcEEEccCchhhheeecccHHHHHHHHHCCCEEEEEECcCHHH-HHHHHHHcCCcEEeeCC---C
Confidence            47999999999999954433222111 1122333455999999999999999999998 79999999999887653   7


Q ss_pred             CChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          100 CCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       100 p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      |+|.+...+.  .++++++|++|.|+.|++.++++||+.+.+-
T Consensus       100 ~k~~~~~~~~~~~~~~~~~~~~vGD~~nDi~~~~~ag~~va~~  142 (195)
T 3n07_A          100 DKVQAYYDICQKLAIAPEQTGYIGDDLIDWPVMEKVALRVCVA  142 (195)
T ss_dssp             SHHHHHHHHHHHHCCCGGGEEEEESSGGGHHHHTTSSEEEECT
T ss_pred             CcHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHCCCEEEEC
Confidence            8886655554  5678899999999999999999999887653

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=99.74  E-value=2.8e-18  Score=127.90  Aligned_cols=92  Identities=13%  Similarity=0.010  Sum_probs=73.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHH---H--hhCCCc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFF---L--FFFSIS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~---~--~~~~~~  115 (149)
                      ..++|++.++|+.|++ |++++++||++... +...++.  +..+|+.+.      ..||+|..+..+   .  .+++|+
T Consensus        98 ~~~~~~~~~~l~~l~~-~~~~~i~tn~~~~~-~~~~l~~--l~~~fd~i~~~~~~~~~KP~~~~~~~~l~~~~~lgi~~~  173 (240)
T 3smv_A           98 WPAFPDTVEALQYLKK-HYKLVILSNIDRNE-FKLSNAK--LGVEFDHIITAQDVGSYKPNPNNFTYMIDALAKAGIEKK  173 (240)
T ss_dssp             CCBCTTHHHHHHHHHH-HSEEEEEESSCHHH-HHHHHTT--TCSCCSEEEEHHHHTSCTTSHHHHHHHHHHHHHTTCCGG
T ss_pred             CCCCCcHHHHHHHHHh-CCeEEEEeCCChhH-HHHHHHh--cCCccCEEEEccccCCCCCCHHHHHHHHHHHHhcCCCch
Confidence            3688999999999999 89999999999887 5777776  556777652      347777433333   2  468889


Q ss_pred             ceEEEeehH-hHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      +|++|.|++ +++.+|++||+.++.+.+
T Consensus       174 ~~~~vGD~~~~Di~~a~~aG~~~~~~~~  201 (240)
T 3smv_A          174 DILHTAESLYHDHIPANDAGLVSAWIYR  201 (240)
T ss_dssp             GEEEEESCTTTTHHHHHHHTCEEEEECT
T ss_pred             hEEEECCCchhhhHHHHHcCCeEEEEcC
Confidence            999999996 999999999999987653

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.74  E-value=3.7e-18  Score=127.71  Aligned_cols=115  Identities=15%  Similarity=0.028  Sum_probs=89.3

Q ss_pred             CCccEEEEecCCccccccccccccCCC---CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEI---PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~---~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      ..+++++||+||||+++...+....+.   ..+.++  ..|++|+++|++++|+||++... +...++.+|+..+|+.. 
T Consensus        17 ~~ik~vifD~DGtL~~~~~~~~~~~~~~~~~~~~d~--~~l~~L~~~g~~~~ivTn~~~~~-~~~~l~~lgl~~~~~~~-   92 (191)
T 3n1u_A           17 KKIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDG--MGLKLLMAAGIQVAIITTAQNAV-VDHRMEQLGITHYYKGQ-   92 (191)
T ss_dssp             HTCSEEEECSTTTTBCSCCEECTTCCEECCBCHHHH--HHHHHHHHTTCEEEEECSCCSHH-HHHHHHHHTCCEEECSC-
T ss_pred             hcCCEEEEeCCCCCCCCceeecCCchhhhhccccCh--HHHHHHHHCCCeEEEEeCcChHH-HHHHHHHcCCccceeCC-
Confidence            348999999999999954333221110   111111  24999999999999999999998 79999999998887754 


Q ss_pred             ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           97 RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        97 ~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                        +|+|.....+.  .++++++|+++.|+.+++.++++||+.+.+.
T Consensus        93 --kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~~~~~  136 (191)
T 3n1u_A           93 --VDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGLGVAVS  136 (191)
T ss_dssp             --SSCHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECT
T ss_pred             --CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCEEEeC
Confidence              88886655554  5678899999999999999999999987653

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.74  E-value=5.2e-18  Score=126.70  Aligned_cols=94  Identities=20%  Similarity=0.184  Sum_probs=79.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++|++.++|++|+ +|++++++||++... +...++.+|+..+|+.+.      ..||+|.+...+.  .+++|++|+
T Consensus       106 ~~~~~~~~~~l~~l~-~g~~~~i~sn~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  183 (240)
T 3qnm_A          106 SGLMPHAKEVLEYLA-PQYNLYILSNGFREL-QSRKMRSAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESL  183 (240)
T ss_dssp             CCBSTTHHHHHHHHT-TTSEEEEEECSCHHH-HHHHHHHHTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             CCcCccHHHHHHHHH-cCCeEEEEeCCchHH-HHHHHHHcChHhhceeEEEeccCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            568999999999999 999999999998888 689999999998887652      3477775544444  567789999


Q ss_pred             EEeehH-hHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      +|.|++ +++.+|++||+.++.+.+
T Consensus       184 ~iGD~~~~Di~~a~~aG~~~~~~~~  208 (240)
T 3qnm_A          184 MIGDSWEADITGAHGVGMHQAFYNV  208 (240)
T ss_dssp             EEESCTTTTHHHHHHTTCEEEEECC
T ss_pred             EECCCchHhHHHHHHcCCeEEEEcC
Confidence            999996 999999999999987654

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=99.73  E-value=7.4e-18  Score=125.87  Aligned_cols=93  Identities=22%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++|++.++|+.|+++ ++++++||++... +...++.+|+..+|+.+.      ..||+|.....+.  .+++|++|+
T Consensus        99 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (234)
T 3u26_A           99 GELYPEVVEVLKSLKGK-YHVGMITDSDTEQ-AMAFLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAV  176 (234)
T ss_dssp             CCBCTTHHHHHHHHTTT-SEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CCcCcCHHHHHHHHHhC-CcEEEEECCCHHH-HHHHHHHcCcHHHcceeEeccccCCCCcCHHHHHHHHHHcCCCchhEE
Confidence            46889999999999999 9999999999888 699999999999888752      3577775544443  668889999


Q ss_pred             EEeehH-hHHHHHHHhCCchhhhh
Q 032013          119 LFVDLF-CFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~-~gi~aa~~ag~~~~~~~  141 (149)
                      +|.|++ |++.+|++||++++.+.
T Consensus       177 ~vGD~~~~Di~~a~~aG~~~~~v~  200 (234)
T 3u26_A          177 YVGDNPVKDCGGSKNLGMTSILLD  200 (234)
T ss_dssp             EEESCTTTTHHHHHTTTCEEEEEC
T ss_pred             EEcCCcHHHHHHHHHcCCEEEEEC
Confidence            999998 99999999999988754

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=99.72  E-value=1.3e-18  Score=128.15  Aligned_cols=95  Identities=20%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH-cCCCCCcccc------cccCCChhHHHHHH--hhCCCcce
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPM------VRLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ..+.|++.++|++|+++|++++++||++... +...++. +|+..+|+.+      ...||+|.....+.  .++++++|
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~~~~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  168 (206)
T 2b0c_A           90 VALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDT  168 (206)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCCCCT-TSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEECCChHH-HHHHHHhccChhhheeeEEEecccCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            4678999999999999999999999998776 4555555 5666666654      23477774433333  66888999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +++.|+++++.+|++||++++.+.+
T Consensus       169 ~~vgD~~~Di~~a~~aG~~~~~~~~  193 (206)
T 2b0c_A          169 VFFDDNADNIEGANQLGITSILVKD  193 (206)
T ss_dssp             EEEESCHHHHHHHHTTTCEEEECCS
T ss_pred             EEeCCCHHHHHHHHHcCCeEEEecC
Confidence            9999999999999999999987643

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=99.72  E-value=1e-18  Score=131.09  Aligned_cols=92  Identities=18%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--Ccccc------------cc------cCCChhHHH
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFVPM------------VR------LSCCIMCII  106 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--~f~~~------------~~------~~p~p~~~i  106 (149)
                      .+++||+.++|++|+++|++++|+||++... ++..++.+|+..  +|+..            ..      .+|+|.+..
T Consensus        85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~Kp~~~~  163 (225)
T 1nnl_A           85 PHLTPGIRELVSRLQERNVQVFLISGGFRSI-VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIK  163 (225)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHHHcCCCcccEEeeeEEEcCCCcEecCCCCCcccCCCchHHHHH
Confidence            5689999999999999999999999999888 799999999973  55432            11      124553333


Q ss_pred             HHHhhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          107 FFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       107 ~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      .+...+++++|++++||++++.+|++||+ ++.+
T Consensus       164 ~~~~~~~~~~~~~vGDs~~Di~~a~~ag~-~i~~  196 (225)
T 1nnl_A          164 LLKEKFHFKKIIMIGDGATDMEACPPADA-FIGF  196 (225)
T ss_dssp             HHHHHHCCSCEEEEESSHHHHTTTTTSSE-EEEE
T ss_pred             HHHHHcCCCcEEEEeCcHHhHHHHHhCCe-EEEe
Confidence            33344566899999999999999999999 6654

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=99.72  E-value=1.7e-17  Score=124.85  Aligned_cols=92  Identities=8%  Similarity=-0.067  Sum_probs=72.3

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-------ccC-------CChhHHHHHH----
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-------RLS-------CCIMCIIFFL----  109 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-------~~~-------p~p~~~i~~~----  109 (149)
                      .++||+.++|++|+++|++++|+||++... ++.+++.+|+..+|....       ..+       +.+.+..+..    
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~  170 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFV-TAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAG  170 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHH
Confidence            569999999999999999999999999888 799999999986654321       001       1122233322    


Q ss_pred             hh---CCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          110 FF---FSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       110 ~~---~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      .+   +++++|++++||.+++.++++||+.++|.
T Consensus       171 ~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~~~  204 (232)
T 3fvv_A          171 MGLALGDFAESYFYSDSVNDVPLLEAVTRPIAAN  204 (232)
T ss_dssp             TTCCGGGSSEEEEEECCGGGHHHHHHSSEEEEES
T ss_pred             cCCCcCchhheEEEeCCHhhHHHHHhCCCeEEEC
Confidence            45   77899999999999999999999998764

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=99.72  E-value=1.7e-17  Score=122.63  Aligned_cols=93  Identities=17%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..+.|++.++|+.++++|++++++||++... +...++.+++..+|+...      ..||+|.+...+.  .++++++|+
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~i~~~~~i  171 (226)
T 1te2_A           93 RPLLPGVREAVALCKEQGLLVGLASASPLHM-LEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCV  171 (226)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHHHTSCGGGEE
T ss_pred             CCcCccHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhcCcHhhCcEEEeccccCCCCCChHHHHHHHHHcCCCHHHeE
Confidence            4678999999999999999999999998887 688999999988877652      3477776555554  567889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +|.|++|++.+|++||+.++.+
T Consensus       172 ~iGD~~nDi~~a~~aG~~~~~~  193 (226)
T 1te2_A          172 ALEDSVNGMIASKAARMRSIVV  193 (226)
T ss_dssp             EEESSHHHHHHHHHTTCEEEEC
T ss_pred             EEeCCHHHHHHHHHcCCEEEEE
Confidence            9999999999999999998874

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=99.71  E-value=1.9e-17  Score=123.03  Aligned_cols=116  Identities=16%  Similarity=0.052  Sum_probs=89.5

Q ss_pred             CccEEEEecCCccccccccccccCCCCccC-ccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS   99 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~-pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~   99 (149)
                      .+++++||+||||+++..++...++....+ ..-..+|++|+++|++++|+||++... ++..++.+|+..+|..   .+
T Consensus        25 ~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~v~ivT~~~~~~-~~~~l~~lgl~~~~~~---~k  100 (188)
T 2r8e_A           25 NIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKL-VEDRCATLGITHLYQG---QS  100 (188)
T ss_dssp             TCSEEEECCCCCCBCSEEEEETTSCEEEEEEHHHHHHHHHHHTTTCEEEEECSSCCHH-HHHHHHHHTCCEEECS---CS
T ss_pred             cCCEEEEeCCCCcCCCCEEecCCCcEEEEeecccHHHHHHHHHCCCeEEEEeCCChHH-HHHHHHHcCCceeecC---CC
Confidence            479999999999998654433222211111 112247999999999999999999998 7999999999877754   48


Q ss_pred             CChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          100 CCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       100 p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      |+|.....+.  .++++++|+++.|+.+++.+|++||+.+++.
T Consensus       101 pk~~~~~~~~~~~g~~~~~~~~iGD~~~Di~~a~~ag~~~~~~  143 (188)
T 2r8e_A          101 NKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVA  143 (188)
T ss_dssp             CSHHHHHHHHHHHTCCGGGEEEEESSGGGHHHHTTSSEEEECT
T ss_pred             CCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCEEEec
Confidence            8885554444  4677899999999999999999999998764

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=99.70  E-value=3.5e-17  Score=120.83  Aligned_cols=93  Identities=16%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..+.|++.++++.++++|++++++||++... +...++.+++..+|+...      ..+|+|.+...+.  .++++++|+
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i  166 (225)
T 3d6j_A           88 TILFPDTLPTLTHLKKQGIRIGIISTKYRFR-ILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVL  166 (225)
T ss_dssp             CEECTTHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHHTSSCTTCCSEEECGGGCSSCTTSTHHHHHHHHHTTCCGGGEE
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEECCCHHH-HHHHHHHcCchhheeeeeehhhcCCCCCChHHHHHHHHHhCCChHHeE
Confidence            4568999999999999999999999998887 688999999988877642      2477775544444  567789999


Q ss_pred             EEeehHhHHHHHHHhCCchhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +|.|++|++.+|++||+.++.+
T Consensus       167 ~iGD~~nDi~~~~~aG~~~~~~  188 (225)
T 3d6j_A          167 YIGDSTVDAGTAAAAGVSFTGV  188 (225)
T ss_dssp             EEESSHHHHHHHHHHTCEEEEE
T ss_pred             EEcCCHHHHHHHHHCCCeEEEE
Confidence            9999999999999999998773

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.70  E-value=4.4e-17  Score=118.43  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..+.|++.++|+.++++|++++++||+.... .. .++.+++..+|+...      ..||+|.....+.  .++++++|+
T Consensus        84 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~-~~~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~i~~~~~~  161 (207)
T 2go7_A           84 VVLMPGAREVLAWADESGIQQFIYTHKGNNA-FT-ILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTY  161 (207)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTHH-HH-HHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             ceeCcCHHHHHHHHHHCCCeEEEEeCCchHH-HH-HHHHcCchhheeeEEecCcCCCCCCCcHHHHHHHHHhCCCcccEE
Confidence            4578999999999999999999999999887 68 889999988877542      3467775544443  667889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|.|+.|++.+|++||+.++.+.
T Consensus       162 ~iGD~~nDi~~~~~aG~~~i~~~  184 (207)
T 2go7_A          162 YIGDRTLDVEFAQNSGIQSINFL  184 (207)
T ss_dssp             EEESSHHHHHHHHHHTCEEEESS
T ss_pred             EECCCHHHHHHHHHCCCeEEEEe
Confidence            99999999999999999976553

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=99.70  E-value=4.3e-17  Score=122.65  Aligned_cols=92  Identities=13%  Similarity=-0.003  Sum_probs=76.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++|++.++|+.|+++ ++++++||++... +...++.+|+.  |+.+      ...||+|.+...+.  .++++++|+
T Consensus       115 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~~~--f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  190 (254)
T 3umg_A          115 LTPWPDSVPGLTAIKAE-YIIGPLSNGNTSL-LLDMAKNAGIP--WDVIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVM  190 (254)
T ss_dssp             CCBCTTHHHHHHHHHHH-SEEEECSSSCHHH-HHHHHHHHTCC--CSCCCCHHHHTCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             CcCCcCHHHHHHHHHhC-CeEEEEeCCCHHH-HHHHHHhCCCC--eeEEEEcCcCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence            46789999999999997 9999999999888 68999999985  5443      24577775544444  567889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|.|++|++.+|++||+.++.+.|
T Consensus       191 ~iGD~~~Di~~a~~aG~~~~~~~~  214 (254)
T 3umg_A          191 LAAAHNGDLEAAHATGLATAFILR  214 (254)
T ss_dssp             EEESCHHHHHHHHHTTCEEEEECC
T ss_pred             EEeCChHhHHHHHHCCCEEEEEec
Confidence            999999999999999999988764

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=99.70  E-value=9.7e-18  Score=134.86  Aligned_cols=118  Identities=15%  Similarity=0.028  Sum_probs=94.9

Q ss_pred             CCCccEEEEecCCcccccccccc---------------------------------------------ccCCCCccCccH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA   53 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~---------------------------------------------~~~~~~~~~pg~   53 (149)
                      .+.+++++||+||||++.+....                                             .-.+..+++||+
T Consensus       105 ~~~~kaviFDlDGTLid~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~~~~~~i~~~~~~~~l~pg~  184 (317)
T 4eze_A          105 LPANGIIAFDMDSTFIAEEGVDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAVLNAVCDRMTLSPGL  184 (317)
T ss_dssp             CCCSCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTTTCBHHHHHHHHHTCCBCTTH
T ss_pred             CCCCCEEEEcCCCCccCCccHHHHHHHhCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHhCCEECcCH
Confidence            45689999999999999642100                                             001236799999


Q ss_pred             HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc----------------ccCCChhHHHHHH----hhCC
Q 032013           54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV----------------RLSCCIMCIIFFL----FFFS  113 (149)
Q Consensus        54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~----------------~~~p~p~~~i~~~----~~~~  113 (149)
                      .++|++|+++|++++|+||+.... ++..++.+|+..+|+...                ..+|+|  .+|..    .+++
T Consensus       185 ~e~L~~Lk~~G~~v~IvSn~~~~~-~~~~l~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpkp--~~~~~~~~~lgv~  261 (317)
T 4eze_A          185 LTILPVIKAKGFKTAIISGGLDIF-TQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANKK--QTLVDLAARLNIA  261 (317)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEEEECEEEETTEEEEEECSSCCCHHHHH--HHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCCEEEEEeCccHHH-HHHHHHHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCCH--HHHHHHHHHcCCC
Confidence            999999999999999999999888 799999999998887541                124555  55554    5688


Q ss_pred             CcceEEEeehHhHHHHHHHhCCchhh
Q 032013          114 ISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       114 ~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++|++++||++++.+|++||+.+.+
T Consensus       262 ~~~~i~VGDs~~Di~aa~~AG~~va~  287 (317)
T 4eze_A          262 TENIIACGDGANDLPMLEHAGTGIAW  287 (317)
T ss_dssp             GGGEEEEECSGGGHHHHHHSSEEEEE
T ss_pred             cceEEEEeCCHHHHHHHHHCCCeEEe
Confidence            89999999999999999999997765

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=2e-17  Score=128.52  Aligned_cols=93  Identities=20%  Similarity=0.070  Sum_probs=76.5

Q ss_pred             CCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhC----
Q 032013           46 IPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFF----  112 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~----  112 (149)
                      ...+.|++.++|+.|+++ |++++++||+.... +...++.+++.. |+.+      ...+|+|.+...+.  .++    
T Consensus       112 ~~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~-~~~~l~~~~l~~-f~~i~~~~~~~~~kp~~~~~~~~~~~lgi~~~~  189 (275)
T 2qlt_A          112 HSIEVPGAVKLCNALNALPKEKWAVATSGTRDM-AKKWFDILKIKR-PEYFITANDVKQGKPHPEPYLKGRNGLGFPINE  189 (275)
T ss_dssp             TCEECTTHHHHHHHHHTSCGGGEEEECSSCHHH-HHHHHHHHTCCC-CSSEECGGGCSSCTTSSHHHHHHHHHTTCCCCS
T ss_pred             CCCcCcCHHHHHHHHHhccCCeEEEEeCCCHHH-HHHHHHHcCCCc-cCEEEEcccCCCCCCChHHHHHHHHHcCCCccc
Confidence            356889999999999999 99999999999888 789999998863 4433      23477775555444  567    


Q ss_pred             ---CCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          113 ---SISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       113 ---~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                         ++++|++|+|++|++.+|++||+.++.+
T Consensus       190 ~~~~~~~~i~~GDs~nDi~~a~~AG~~~i~v  220 (275)
T 2qlt_A          190 QDPSKSKVVVFEDAPAGIAAGKAAGCKIVGI  220 (275)
T ss_dssp             SCGGGSCEEEEESSHHHHHHHHHTTCEEEEE
T ss_pred             cCCCcceEEEEeCCHHHHHHHHHcCCEEEEE
Confidence               7899999999999999999999998874

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=99.70  E-value=1.3e-17  Score=122.52  Aligned_cols=91  Identities=15%  Similarity=0.013  Sum_probs=71.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc---------------c-cCCChhHHHHHH-
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV---------------R-LSCCIMCIIFFL-  109 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~---------------~-~~p~p~~~i~~~-  109 (149)
                      ..+.|++.++|++++++|++++++||++... +...++.+++..+|....               . ..++|.+...+. 
T Consensus        75 ~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~  153 (211)
T 1l7m_A           75 ITPTEGAEETIKELKNRGYVVAVVSGGFDIA-VNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAK  153 (211)
T ss_dssp             CCBCTTHHHHHHHHHHTTEEEEEEEEEEHHH-HHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHcCCCeEEEeeeEEECCEEcCCcccCccCCccHHHHHHHHHH
Confidence            4578999999999999999999999998877 688889999877664321               0 123443344333 


Q ss_pred             -hhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013          110 -FFFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus       110 -~~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                       .++++++|++|+||.|++.+|++||+.+.
T Consensus       154 ~lgi~~~~~~~iGD~~~Di~~~~~ag~~~~  183 (211)
T 1l7m_A          154 IEGINLEDTVAVGDGANDISMFKKAGLKIA  183 (211)
T ss_dssp             HHTCCGGGEEEEECSGGGHHHHHHCSEEEE
T ss_pred             HcCCCHHHEEEEecChhHHHHHHHCCCEEE
Confidence             56788999999999999999999999754

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=99.70  E-value=2.9e-17  Score=125.09  Aligned_cols=92  Identities=9%  Similarity=0.041  Sum_probs=78.8

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-ccCCChhHHHHHH--hhCCCcceEEEeeh
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-RLSCCIMCIIFFL--FFFSISAFILFVDL  123 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-~~~p~p~~~i~~~--~~~~~~~~l~~eDs  123 (149)
                      ..++|++.++|+.|+ +|++++++||++... +...++.+++..+|+.+. ..||+|.+...+.  .++++++|++|+|+
T Consensus       111 ~~~~~~~~~~l~~l~-~~~~~~i~t~~~~~~-~~~~l~~~~l~~~f~~i~~~~kp~~~~~~~~~~~l~~~~~~~i~iGD~  188 (251)
T 2pke_A          111 VEVIAGVREAVAAIA-ADYAVVLITKGDLFH-QEQKIEQSGLSDLFPRIEVVSEKDPQTYARVLSEFDLPAERFVMIGNS  188 (251)
T ss_dssp             CCBCTTHHHHHHHHH-TTSEEEEEEESCHHH-HHHHHHHHSGGGTCCCEEEESCCSHHHHHHHHHHHTCCGGGEEEEESC
T ss_pred             CCcCccHHHHHHHHH-CCCEEEEEeCCCHHH-HHHHHHHcCcHHhCceeeeeCCCCHHHHHHHHHHhCcCchhEEEECCC
Confidence            457899999999999 999999999999887 689999999999988764 4577775554444  56888999999999


Q ss_pred             H-hHHHHHHHhCCchhhh
Q 032013          124 F-CFMYAAAYVGCDLYVY  140 (149)
Q Consensus       124 ~-~gi~aa~~ag~~~~~~  140 (149)
                      + |++.+|++||+.++.+
T Consensus       189 ~~~Di~~a~~aG~~~~~v  206 (251)
T 2pke_A          189 LRSDVEPVLAIGGWGIYT  206 (251)
T ss_dssp             CCCCCHHHHHTTCEEEEC
T ss_pred             chhhHHHHHHCCCEEEEE
Confidence            9 9999999999998876

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=99.69  E-value=5.2e-17  Score=122.83  Aligned_cols=92  Identities=13%  Similarity=0.015  Sum_probs=75.8

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++|++.++|+.|+++ ++++++||++... +...++.+|+.  |+.+      ...||+|.+...+.  .+++|++|+
T Consensus       119 ~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~g~~--f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  194 (254)
T 3umc_A          119 LRPWPDTLAGMHALKAD-YWLAALSNGNTAL-MLDVARHAGLP--WDMLLCADLFGHYKPDPQVYLGACRLLDLPPQEVM  194 (254)
T ss_dssp             CEECTTHHHHHHHHTTT-SEEEECCSSCHHH-HHHHHHHHTCC--CSEECCHHHHTCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CCCCccHHHHHHHHHhc-CeEEEEeCCCHHH-HHHHHHHcCCC--cceEEeecccccCCCCHHHHHHHHHHcCCChHHEE
Confidence            45689999999999986 9999999999888 68999999985  5543      24577775544443  668889999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|.|+.+++.+|++||+.++.+.|
T Consensus       195 ~iGD~~~Di~~a~~aG~~~~~~~~  218 (254)
T 3umc_A          195 LCAAHNYDLKAARALGLKTAFIAR  218 (254)
T ss_dssp             EEESCHHHHHHHHHTTCEEEEECC
T ss_pred             EEcCchHhHHHHHHCCCeEEEEec
Confidence            999999999999999999988764

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=99.69  E-value=3.3e-17  Score=122.26  Aligned_cols=89  Identities=18%  Similarity=0.124  Sum_probs=72.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcceE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAFI  118 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~l  118 (149)
                      ..++|++.++|+.|+++ ++++++||++..      ++.+|+..+|+.+.      ..||+|.+...+.  .+++|++|+
T Consensus       104 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~------l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (230)
T 3vay_A          104 VQIFPEVQPTLEILAKT-FTLGVITNGNAD------VRRLGLADYFAFALCAEDLGIGKPDPAPFLEALRRAKVDASAAV  176 (230)
T ss_dssp             CCBCTTHHHHHHHHHTT-SEEEEEESSCCC------GGGSTTGGGCSEEEEHHHHTCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCcCHHHHHHHHHhC-CeEEEEECCchh------hhhcCcHHHeeeeEEccccCCCCcCHHHHHHHHHHhCCCchheE
Confidence            45899999999999998 999999998754      46788888888752      3377774444443  668889999


Q ss_pred             EEeehH-hHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      +|.|++ +++.+|++||++++.+.+
T Consensus       177 ~vGD~~~~Di~~a~~aG~~~~~v~~  201 (230)
T 3vay_A          177 HVGDHPSDDIAGAQQAGMRAIWYNP  201 (230)
T ss_dssp             EEESCTTTTHHHHHHTTCEEEEECT
T ss_pred             EEeCChHHHHHHHHHCCCEEEEEcC
Confidence            999998 999999999999987654

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=99.69  E-value=5.4e-17  Score=119.35  Aligned_cols=92  Identities=15%  Similarity=0.050  Sum_probs=71.1

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC--Cccc------c------cccCCChhHHHHHH---
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MFVP------M------VRLSCCIMCIIFFL---  109 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~--~f~~------~------~~~~p~p~~~i~~~---  109 (149)
                      ..+.|++.++|++|+++|++++++||++... ++..++.+|+..  +|..      .      ...+|+|...+...   
T Consensus        81 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (219)
T 3kd3_A           81 NLLTDGIKELVQDLKNKGFEIWIFSGGLSES-IQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSAFDKA  159 (219)
T ss_dssp             TTBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTTCHHHHHHHH
T ss_pred             ccCChhHHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHcCCCcccEEEeeeeecCCCceeccCCCCCCcccHHHHHHHH
Confidence            3588999999999999999999999999888 799999999843  4431      1      22355553333322   


Q ss_pred             hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          110 FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       110 ~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      .++++++|++|.||.|++.++ ++||.++.+
T Consensus       160 ~~~~~~~~~~vGD~~~Di~~~-~~G~~~~~v  189 (219)
T 3kd3_A          160 KGLIDGEVIAIGDGYTDYQLY-EKGYATKFI  189 (219)
T ss_dssp             GGGCCSEEEEEESSHHHHHHH-HHTSCSEEE
T ss_pred             hCCCCCCEEEEECCHhHHHHH-hCCCCcEEE
Confidence            478899999999999999998 689986543

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=99.68  E-value=3.1e-18  Score=128.70  Aligned_cols=93  Identities=23%  Similarity=0.276  Sum_probs=73.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHHhhCCCcceEEE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFLFFFSISAFILF  120 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~~~~~~~~~l~~  120 (149)
                      ..++||+.++|++|+++|++++++||++. . +...++.+|+..+|+.+.      ..||+|..+..+...++... +++
T Consensus        94 ~~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~v  170 (220)
T 2zg6_A           94 AFLYDDTLEFLEGLKSNGYKLALVSNASP-R-VKTLLEKFDLKKYFDALALSYEIKAVKPNPKIFGFALAKVGYPA-VHV  170 (220)
T ss_dssp             EEECTTHHHHHHHHHTTTCEEEECCSCHH-H-HHHHHHHHTCGGGCSEEC-----------CCHHHHHHHHHCSSE-EEE
T ss_pred             ceECcCHHHHHHHHHHCCCEEEEEeCCcH-H-HHHHHHhcCcHhHeeEEEeccccCCCCCCHHHHHHHHHHcCCCe-EEE
Confidence            36789999999999999999999999975 5 688999999999987652      34777755555554455544 999


Q ss_pred             eehHh-HHHHHHHhCCchhhhhh
Q 032013          121 VDLFC-FMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       121 eDs~~-gi~aa~~ag~~~~~~~~  142 (149)
                      +||++ ++.+|++|||+++.+.+
T Consensus       171 gD~~~~Di~~a~~aG~~~i~v~~  193 (220)
T 2zg6_A          171 GDIYELDYIGAKRSYVDPILLDR  193 (220)
T ss_dssp             ESSCCCCCCCSSSCSEEEEEBCT
T ss_pred             cCCchHhHHHHHHCCCeEEEECC
Confidence            99999 99999999999987754

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=99.68  E-value=1.3e-16  Score=122.11  Aligned_cols=93  Identities=10%  Similarity=-0.059  Sum_probs=75.9

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc-ccc------cccCCChhHHHHHH--hhCCC-cc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPM------VRLSCCIMCIIFFL--FFFSI-SA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f-~~~------~~~~p~p~~~i~~~--~~~~~-~~  116 (149)
                      ..++|++.++++.|+++|++++++||++... +...++.+++..+| +..      ...+|+|.+...+.  .++++ ++
T Consensus       102 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  180 (267)
T 1swv_A          102 ASPINGVKEVIASLRERGIKIGSTTGYTREM-MDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNH  180 (267)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHHHHTTCCCSCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGGG
T ss_pred             cccCccHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCcccChHheecCCccCCCCCCHHHHHHHHHHhCCCCCcC
Confidence            3568999999999999999999999998887 68888888777665 433      23577876555554  56778 89


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      |++|.|+.|++.+|++||+.++.+
T Consensus       181 ~i~iGD~~nDi~~a~~aG~~~i~v  204 (267)
T 1swv_A          181 MIKVGDTVSDMKEGRNAGMWTVGV  204 (267)
T ss_dssp             EEEEESSHHHHHHHHHTTSEEEEE
T ss_pred             EEEEeCCHHHHHHHHHCCCEEEEE
Confidence            999999999999999999987764

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=99.68  E-value=9.7e-17  Score=118.54  Aligned_cols=113  Identities=18%  Similarity=0.040  Sum_probs=85.5

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHH--HHHHHHHHCCceEEEEeCCCchHHHHHHHH--HcCCCCCcccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK--GILEALKEKGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPM   95 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~--e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~--~~gl~~~f~~~   95 (149)
                      ..+|+++||+||||+++...+.++++....+ .+.  ..|++|+++|++++|+||+  .. ++..++  .+++. +|.  
T Consensus         7 ~~ikliv~D~DGtL~d~~~~~~~~g~~~~~f-~~~D~~~L~~Lk~~Gi~~~I~Tg~--~~-~~~~l~~l~lgi~-~~~--   79 (168)
T 3ewi_A            7 KEIKLLVCNIDGCLTNGHIYVSGDQKEIISY-DVKDAIGISLLKKSGIEVRLISER--AC-SKQTLSALKLDCK-TEV--   79 (168)
T ss_dssp             CCCCEEEEECCCCCSCSCCBCCSSCCCEEEE-EHHHHHHHHHHHHTTCEEEEECSS--CC-CHHHHHTTCCCCC-EEC--
T ss_pred             hcCcEEEEeCccceECCcEEEcCCCCEEEEE-ecCcHHHHHHHHHCCCEEEEEeCc--HH-HHHHHHHhCCCcE-EEE--
Confidence            4589999999999999765554444333333 222  4699999999999999999  45 678899  67776 543  


Q ss_pred             cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           96 VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        96 ~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                       +.+++|.+...+.  .++++++|+.|.|+.|++.++++||+.+.+.
T Consensus        80 -g~~~K~~~l~~~~~~~gi~~~~~~~vGD~~nDi~~~~~ag~~~a~~  125 (168)
T 3ewi_A           80 -SVSDKLATVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPA  125 (168)
T ss_dssp             -SCSCHHHHHHHHHHHTTCCGGGEEEECCSGGGHHHHHHSSEEEECT
T ss_pred             -CCCChHHHHHHHHHHcCcChHHEEEEeCCHhHHHHHHHCCCEEEeC
Confidence             3466665554444  5677899999999999999999999887663

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.67  E-value=2.2e-16  Score=131.12  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=87.6

Q ss_pred             CCccEEEEecCCcccccccc--ccccC-CCCccCccHHHHHHHHHHCCceEEEEeCCC------------chHHHHHHHH
Q 032013           20 NLPRLVVFDLDYTLWPFYCE--CCYED-EIPYLYPHAKGILEALKEKGIHVAVASRSP------------APDIAKTFLH   84 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~--~~~~~-~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~------------~~~i~~~~l~   84 (149)
                      .++++++||+||||++....  +.... ....++||+.++|++|+++|++++|+||++            ... +...++
T Consensus        56 ~~~k~v~fD~DGTL~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~-~~~~l~  134 (416)
T 3zvl_A           56 PQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGK-VEAVLE  134 (416)
T ss_dssp             CCSSEEEECSBTTTEECSSCSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHH-HHHHHH
T ss_pred             CCCeEEEEeCCCCccccCCCccCCCCHHHhhhhcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHH-HHHHHH
Confidence            45799999999999974210  11111 112478999999999999999999999975            222 467888


Q ss_pred             HcCCCCCcccc------cccCCChhHHHHHHh--h----CCCcceEEEeehH-----------------hHHHHHHHhCC
Q 032013           85 KLGIHSMFVPM------VRLSCCIMCIIFFLF--F----FSISAFILFVDLF-----------------CFMYAAAYVGC  135 (149)
Q Consensus        85 ~~gl~~~f~~~------~~~~p~p~~~i~~~~--~----~~~~~~l~~eDs~-----------------~gi~aa~~ag~  135 (149)
                      .+|+.  |+.+      ...||+|.....+..  +    +++++|++++|+.                 +++++|++||+
T Consensus       135 ~lgl~--fd~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~v~~~~~l~VGDs~gr~~~~~~~~~~~d~s~~Di~~A~~aGi  212 (416)
T 3zvl_A          135 KLGVP--FQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGL  212 (416)
T ss_dssp             HHTSC--CEEEEECSSSTTSTTSSHHHHHHHHHSSTTCCCCGGGCEEECSCSCBCTTSSTTCCSCCSCCHHHHHHHHHTC
T ss_pred             HcCCC--EEEEEECCCCCCCCCCHHHHHHHHHHhCCCCCCCHHHeEEEECCCCCcccccccccccCCChhhHHHHHHcCC
Confidence            99974  5543      245888854444443  3    6789999999997                 89999999999


Q ss_pred             chhhhh
Q 032013          136 DLYVYK  141 (149)
Q Consensus       136 ~~~~~~  141 (149)
                      +.+...
T Consensus       213 ~f~~pe  218 (416)
T 3zvl_A          213 PFATPE  218 (416)
T ss_dssp             CEECHH
T ss_pred             cccCcH
Confidence            976543

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=99.66  E-value=6.6e-17  Score=123.07  Aligned_cols=90  Identities=13%  Similarity=-0.005  Sum_probs=70.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----cc----------cCCChhH--------
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----VR----------LSCCIMC--------  104 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----~~----------~~p~p~~--------  104 (149)
                      .+++||+.++|++|+++|++++|+||++... ++..++  |+..+ +.+    ..          .||+|..        
T Consensus        76 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~-~~~~l~--~l~~~-~~v~~~~~~~~~~~~~~~~~kp~p~~~~~~~~~~  151 (236)
T 2fea_A           76 AKIREGFREFVAFINEHEIPFYVISGGMDFF-VYPLLE--GIVEK-DRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCC  151 (236)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHT--TTSCG-GGEEEEEEECSSSBCEEECTTCCCTTCCSCCSSC
T ss_pred             CCCCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHh--cCCCC-CeEEeeeeEEcCCceEEecCCCCccccccccCCc
Confidence            5789999999999999999999999998877 688877  66443 332    11          4566632        


Q ss_pred             --HHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          105 --IIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       105 --~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                        .+.-..++++++|++++||.+++.+|++||+.++.+
T Consensus       152 K~~~~~~~~~~~~~~~~vGDs~~Di~~a~~aG~~~~~~  189 (236)
T 2fea_A          152 KPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFARD  189 (236)
T ss_dssp             HHHHHHHHCCTTCEEEEEECCGGGHHHHHTCSEEEECH
T ss_pred             HHHHHHHHhccCCeEEEEeCChHHHHHHHhCCeeeech
Confidence              111225688899999999999999999999998643

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.66  E-value=7.3e-17  Score=126.59  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=85.2

Q ss_pred             CCCccEEEEecCCcccccccccc----------c------cCCCCccCccHHHHHHHHHHCCceEEEEeCCC---chHHH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECC----------Y------EDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIA   79 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~----------~------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~---~~~i~   79 (149)
                      ...+++|+||+||||+++..++.          .      .....+++||+.++|++|+++|++++|+||++   +.. +
T Consensus        56 ~~~~kavifDlDGTLld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~-~  134 (258)
T 2i33_A           56 TEKKPAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDA-T  134 (258)
T ss_dssp             CSSEEEEEECSBTTTEECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHH-H
T ss_pred             CCCCCEEEEeCcccCcCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHH-H
Confidence            45689999999999999632110          0      00114789999999999999999999999998   445 5


Q ss_pred             HHHHHHcCCC--CCcccccccC--CChhHHHHHHhhCCCcceEEEeehHhHHHHHH-------H---------hCCchhh
Q 032013           80 KTFLHKLGIH--SMFVPMVRLS--CCIMCIIFFLFFFSISAFILFVDLFCFMYAAA-------Y---------VGCDLYV  139 (149)
Q Consensus        80 ~~~l~~~gl~--~~f~~~~~~~--p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~-------~---------ag~~~~~  139 (149)
                      ...++.+|+.  .+|+.+....  ..|.+...+. ..+...|++++||.+||.+|.       +         |||++|+
T Consensus       135 ~~~L~~~Gl~~v~~~~vi~~~~~~~K~~~~~~~~-~~~~~~~l~VGDs~~Di~aA~~~~~~~r~a~v~~~~~~aG~~~i~  213 (258)
T 2i33_A          135 IKNLERVGAPQATKEHILLQDPKEKGKEKRRELV-SQTHDIVLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFII  213 (258)
T ss_dssp             HHHHHHHTCSSCSTTTEEEECTTCCSSHHHHHHH-HHHEEEEEEEESSGGGSTTCSSCCHHHHHHHHHHTGGGBTTTEEE
T ss_pred             HHHHHHcCCCcCCCceEEECCCCCCCcHHHHHHH-HhCCCceEEeCCCHHHhcccccCCHHHHHHHHHHHHHHhcCceEE
Confidence            7788899998  5665443221  1233333322 223446899999999999993       4         7999887


Q ss_pred             h
Q 032013          140 Y  140 (149)
Q Consensus       140 ~  140 (149)
                      +
T Consensus       214 l  214 (258)
T 2i33_A          214 F  214 (258)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=99.65  E-value=1.4e-16  Score=117.89  Aligned_cols=92  Identities=11%  Similarity=0.004  Sum_probs=75.1

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc-cc----cc----c-CCChhHHHHHH--hhCC
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV-PM----VR----L-SCCIMCIIFFL--FFFS  113 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~-~~----~~----~-~p~p~~~i~~~--~~~~  113 (149)
                      ..+++||+.++|++|+++ ++++|+||++... ++..++.+|+..+|. ..    ..    . +|+|.......  .+..
T Consensus        67 ~~~~~~g~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~p~p~~~~~~l~~l~~~  144 (206)
T 1rku_A           67 TLKPLEGAVEFVDWLRER-FQVVILSDTFYEF-SQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSL  144 (206)
T ss_dssp             TCCCCTTHHHHHHHHHTT-SEEEEEEEEEHHH-HHHHHHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHHHHHHHT
T ss_pred             hcCCCccHHHHHHHHHhc-CcEEEEECChHHH-HHHHHHHcCCcceecceeEEcCCceEEeeecCCCchHHHHHHHHHhc
Confidence            357899999999999999 9999999998887 799999999999884 22    11    1 37774443333  5678


Q ss_pred             CcceEEEeehHhHHHHHHHhCCchhh
Q 032013          114 ISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       114 ~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++|++++||++++.+|++||+.+++
T Consensus       145 ~~~~~~iGD~~~Di~~a~~aG~~~~~  170 (206)
T 1rku_A          145 YYRVIAAGDSYNDTTMLSEAHAGILF  170 (206)
T ss_dssp             TCEEEEEECSSTTHHHHHHSSEEEEE
T ss_pred             CCEEEEEeCChhhHHHHHhcCccEEE
Confidence            89999999999999999999998654

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.65  E-value=6.4e-17  Score=133.48  Aligned_cols=118  Identities=17%  Similarity=0.024  Sum_probs=94.0

Q ss_pred             CCCccEEEEecCCcccccccccc---------------------------------------------ccCCCCccCccH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA   53 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~---------------------------------------------~~~~~~~~~pg~   53 (149)
                      .+++++++||+||||++.+....                                             ...+..+++||+
T Consensus       182 ~~~~k~viFD~DgTLi~~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pg~  261 (415)
T 3p96_A          182 RRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQLELMPGA  261 (415)
T ss_dssp             TTCCCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTCSCHHHHHHHHHHTTTTCBTHHHHHHHHHCCBCTTH
T ss_pred             ccCCcEEEEcCcccCcCCchHHHHHHHcCCcHHHHHHHHHHhcCCcCHHHHHHHHHHHhcCCCHHHHHHHHHhCccCccH
Confidence            56689999999999999643200                                             001235789999


Q ss_pred             HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc--------------c--ccCCChhHHHHHH----hhCC
Q 032013           54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--------------V--RLSCCIMCIIFFL----FFFS  113 (149)
Q Consensus        54 ~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~--------------~--~~~p~p~~~i~~~----~~~~  113 (149)
                      .++|++|+++|++++|+||+.... ++..++.+|+..+|...              .  ..+|+|  .+|..    .+++
T Consensus       262 ~e~l~~Lk~~G~~~~ivS~~~~~~-~~~~~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~~~kpk~--~~~~~~~~~~gi~  338 (415)
T 3p96_A          262 RTTLRTLRRLGYACGVVSGGFRRI-IEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKA--TALREFAQRAGVP  338 (415)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCSEEEEECEEEETTEEEEEECSSCCCHHHHH--HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHcCccceeeeeEEEeCCEEEeeEccCCCCCcchH--HHHHHHHHHcCcC
Confidence            999999999999999999999888 79999999998877532              1  134555  55554    5688


Q ss_pred             CcceEEEeehHhHHHHHHHhCCchhh
Q 032013          114 ISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       114 ~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++|+++.|+.+++.+|++||+.+.+
T Consensus       339 ~~~~i~vGD~~~Di~~a~~aG~~va~  364 (415)
T 3p96_A          339 MAQTVAVGDGANDIDMLAAAGLGIAF  364 (415)
T ss_dssp             GGGEEEEECSGGGHHHHHHSSEEEEE
T ss_pred             hhhEEEEECCHHHHHHHHHCCCeEEE
Confidence            89999999999999999999998765

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=99.65  E-value=7.3e-19  Score=131.07  Aligned_cols=86  Identities=9%  Similarity=-0.011  Sum_probs=72.7

Q ss_pred             CCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCCCC-CcccccccCCChhHHHHHHhhCCCcceEEEeeh
Q 032013           46 IPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPMVRLSCCIMCIIFFLFFFSISAFILFVDL  123 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl~~-~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs  123 (149)
                      ...++||+.++|++|+++ |++++|+||++... ++..++.+|+.. +|+        .  ...-..+++|++|++++||
T Consensus        73 ~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~f~--------~--~~~~~l~~~~~~~~~vgDs  141 (197)
T 1q92_A           73 ELEPLPGAVEAVKEMASLQNTDVFICTSPIKMF-KYCPYEKYAWVEKYFG--------P--DFLEQIVLTRDKTVVSADL  141 (197)
T ss_dssp             TCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCC-SSHHHHHHHHHHHHHC--------G--GGGGGEEECSCSTTSCCSE
T ss_pred             cCCcCcCHHHHHHHHHhcCCCeEEEEeCCccch-HHHHHHHhchHHHhch--------H--HHHHHhccCCccEEEECcc
Confidence            457899999999999999 99999999999887 688889999877 775        1  1112256888999999999


Q ss_pred             HhH----HHHHH-HhCCchhhhhh
Q 032013          124 FCF----MYAAA-YVGCDLYVYKR  142 (149)
Q Consensus       124 ~~g----i~aa~-~ag~~~~~~~~  142 (149)
                      .+|    +++|+ +|||+++.+.+
T Consensus       142 ~~dD~~~~~~a~~~aG~~~i~~~~  165 (197)
T 1q92_A          142 LIDDRPDITGAEPTPSWEHVLFTA  165 (197)
T ss_dssp             EEESCSCCCCSCSSCSSEEEEECC
T ss_pred             cccCCchhhhcccCCCceEEEecC
Confidence            999    99999 99999998753

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=99.65  E-value=1.4e-16  Score=118.46  Aligned_cols=92  Identities=15%  Similarity=0.068  Sum_probs=74.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc-ccc------ccc--CCChhHHHHHH--hhCCCc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPM------VRL--SCCIMCIIFFL--FFFSIS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f-~~~------~~~--~p~p~~~i~~~--~~~~~~  115 (149)
                      ..+.|++.++|+.++.   +++++||++... +...++.+++..+| +.+      ...  +|+|.+...+.  .+++++
T Consensus        86 ~~~~~~~~~~l~~l~~---~~~i~s~~~~~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~l~~~~~  161 (229)
T 2fdr_A           86 VKIIDGVKFALSRLTT---PRCICSNSSSHR-LDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPD  161 (229)
T ss_dssp             CCBCTTHHHHHHHCCS---CEEEEESSCHHH-HHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGG
T ss_pred             CccCcCHHHHHHHhCC---CEEEEECCChhH-HHHHHHhCChHHhccceEEeccccccCCCCcCHHHHHHHHHHcCCChh
Confidence            4577888888887764   899999998887 68999999998888 543      234  77775555554  668889


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|++|.|++|++.+|++||+.++.+.+
T Consensus       162 ~~i~iGD~~~Di~~a~~aG~~~i~~~~  188 (229)
T 2fdr_A          162 RVVVVEDSVHGIHGARAAGMRVIGFTG  188 (229)
T ss_dssp             GEEEEESSHHHHHHHHHTTCEEEEECC
T ss_pred             HeEEEcCCHHHHHHHHHCCCEEEEEec
Confidence            999999999999999999999776543

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=99.62  E-value=4.7e-18  Score=126.13  Aligned_cols=87  Identities=7%  Similarity=-0.016  Sum_probs=72.4

Q ss_pred             CCccCccHHHHHHHHHHC-CceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehH
Q 032013           46 IPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLF  124 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~-Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~  124 (149)
                      ..+++||+.++|++|+++ |++++|+||++... +...++.+|+   |+.+...      +..-..+++|++|++++||+
T Consensus        71 ~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~-~~~~l~~~gl---f~~i~~~------~~~~~~~~~~~~~~~vgDs~  140 (193)
T 2i7d_A           71 DLEPIPGALDAVREMNDLPDTQVFICTSPLLKY-HHCVGEKYRW---VEQHLGP------QFVERIILTRDKTVVLGDLL  140 (193)
T ss_dssp             TCCBCTTHHHHHHHHHTSTTEEEEEEECCCSSC-TTTHHHHHHH---HHHHHCH------HHHTTEEECSCGGGBCCSEE
T ss_pred             cCccCcCHHHHHHHHHhCCCCeEEEEeCCChhh-HHHHHHHhCc---hhhhcCH------HHHHHcCCCcccEEEECCch
Confidence            467899999999999999 99999999999888 6888998887   5543321      22223678899999999999


Q ss_pred             hH----HHHHH-HhCCchhhhhh
Q 032013          125 CF----MYAAA-YVGCDLYVYKR  142 (149)
Q Consensus       125 ~g----i~aa~-~ag~~~~~~~~  142 (149)
                      ++    +.+|+ +|||+++.+.+
T Consensus       141 ~dD~~~i~~A~~~aG~~~i~~~~  163 (193)
T 2i7d_A          141 IDDKDTVRGQEETPSWEHILFTC  163 (193)
T ss_dssp             EESSSCCCSSCSSCSSEEEEECC
T ss_pred             hhCcHHHhhcccccccceEEEEe
Confidence            99    99999 99999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.61  E-value=3.6e-15  Score=117.41  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=82.8

Q ss_pred             CccEEEEecCCcccccccc----ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH--HHHHHHHH--------c
Q 032013           21 LPRLVVFDLDYTLWPFYCE----CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHK--------L   86 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~----~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~--i~~~~l~~--------~   86 (149)
                      .++.+++|+|||+.+....    |. ......++||+.++|+.|+++|++++|+||++...  .+...++.        +
T Consensus       158 ~~~~i~iD~dgtl~~~~~~~~~~~~-~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~  236 (301)
T 1ltq_A          158 KPKAVIFDVDGTLAKMNGRGPYDLE-KCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIA  236 (301)
T ss_dssp             SCEEEEEETBTTTBCCSSCCTTCGG-GGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTT
T ss_pred             ccceEEEeCCCCcccccCCCchhhh-hccccCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhccccccccc
Confidence            3578999999999874221    11 11224689999999999999999999999998542  03566777        8


Q ss_pred             CCCCCccccc-----ccCCChhHHHHHH----hhCCC-cceEEEeehHhHHHHHHHhCCchhhh
Q 032013           87 GIHSMFVPMV-----RLSCCIMCIIFFL----FFFSI-SAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        87 gl~~~f~~~~-----~~~p~p~~~i~~~----~~~~~-~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      |+  +|+.+.     ..||+|  +++++    .+.++ +.|++++||.+||+||++|||+++.+
T Consensus       237 ~~--~~~~~~~~~~~~~kp~p--~~~~~~~~~~~~~~~~~~~~vgD~~~di~~a~~aG~~~~~v  296 (301)
T 1ltq_A          237 GV--PLVMQCQREQGDTRKDD--VVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQV  296 (301)
T ss_dssp             CC--CCSEEEECCTTCCSCHH--HHHHHHHHHHTTTTCEEEEEEECCHHHHHHHHHTTCCEEEC
T ss_pred             CC--CchheeeccCCCCcHHH--HHHHHHHHHHhccccceEEEeCCcHHHHHHHHHcCCeEEEe
Confidence            88  355432     235555  55554    23444 45799999999999999999998753

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.61  E-value=3.9e-15  Score=113.29  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=36.9

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~   74 (149)
                      .++|+|+||+||||+++      .    ...+++.++++.++++|+++.++||+.
T Consensus         5 ~~ik~i~fDlDGTLld~------~----~~~~~~~~ai~~l~~~G~~~~~~t~~~   49 (259)
T 2ho4_A            5 RALKAVLVDLNGTLHIE------D----AAVPGAQEALKRLRATSVMVRFVTNTT   49 (259)
T ss_dssp             -CCCEEEEESSSSSCC-------------CCTTHHHHHHHHHTSSCEEEEEECCS
T ss_pred             hhCCEEEEeCcCcEEeC------C----EeCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence            35899999999999983      2    345788999999999999999999654

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=99.61  E-value=1e-16  Score=116.86  Aligned_cols=91  Identities=21%  Similarity=0.156  Sum_probs=71.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-------ccCCChhHHHHHHhhCCCcceEE
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-------RLSCCIMCIIFFLFFFSISAFIL  119 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-------~~~p~p~~~i~~~~~~~~~~~l~  119 (149)
                      ..+.|++.++|++|+++|++++++||++... +... +.+|+..++....       ..+|.|.........+++++|++
T Consensus        78 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~~~i~  155 (201)
T 4ap9_A           78 VNVSPEARELVETLREKGFKVVLISGSFEEV-LEPF-KELGDEFMANRAIFEDGKFQGIRLRFRDKGEFLKRFRDGFILA  155 (201)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEEETTT-SGGG-TTTSSEEEEEEEEEETTEEEEEECCSSCHHHHHGGGTTSCEEE
T ss_pred             CCCChhHHHHHHHHHHCCCeEEEEeCCcHHH-HHHH-HHcCchhheeeEEeeCCceECCcCCccCHHHHHHhcCcCcEEE
Confidence            5789999999999999999999999998877 6777 8889877633321       22444433334445568899999


Q ss_pred             EeehHhHHHHHHHhCCchhh
Q 032013          120 FVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       120 ~eDs~~gi~aa~~ag~~~~~  139 (149)
                      |+||+|++.+|++||+.+.+
T Consensus       156 iGD~~~Di~~~~~ag~~v~~  175 (201)
T 4ap9_A          156 MGDGYADAKMFERADMGIAV  175 (201)
T ss_dssp             EECTTCCHHHHHHCSEEEEE
T ss_pred             EeCCHHHHHHHHhCCceEEE
Confidence            99999999999999998544

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=99.61  E-value=1.5e-15  Score=125.37  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc--ccc-----------------ccCCChhHHHH
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV--PMV-----------------RLSCCIMCIIF  107 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~--~~~-----------------~~~p~p~~~i~  107 (149)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+|+..+|+  .+.                 ..||+|.++..
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~-~~~~L~~lgL~~~Fd~~~Ivs~ddv~~~~~~~~~~kp~~KP~P~~~~~  292 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIA  292 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHcCChHhcCCCEEEecccccccccccccccCCCCCCHHHHHH
Confidence            5789999999999999999999999999988 799999999999998  331                 15777744443


Q ss_pred             HHhh----------------CCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013          108 FLFF----------------FSISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       108 ~~~~----------------~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +...                ++|++|++++||++||+||++|||+++.+.
T Consensus       293 a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~~Di~aAk~AG~~~I~V~  342 (384)
T 1qyi_A          293 ALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTL  342 (384)
T ss_dssp             HHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEES
T ss_pred             HHHHcCCccccccccccccCCCCcCeEEEcCCHHHHHHHHHcCCEEEEEC
Confidence            3333                568999999999999999999999988653

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.59  E-value=2.1e-16  Score=119.45  Aligned_cols=117  Identities=15%  Similarity=0.017  Sum_probs=89.7

Q ss_pred             CCccEEEEecCCcccccccccccc--------------CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYE--------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~--------------~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~   85 (149)
                      ...+++++|+||||+++.......              .-.+..+||+.++|+++++. ++++|+|++++.. ++.+++.
T Consensus        26 ~~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~-~~i~I~Tss~~~~-a~~vl~~  103 (195)
T 2hhl_A           26 YGKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQL-FECVLFTASLAKY-ADPVADL  103 (195)
T ss_dssp             TTCCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHH
T ss_pred             CCCeEEEEccccceEcccccCCCCccceeeeecCCceeeEEEEeCcCHHHHHHHHHcC-CeEEEEcCCCHHH-HHHHHHH
Confidence            346789999999999852110000              01246799999999999998 9999999999999 8999999


Q ss_pred             cCCCCCccccccc---CCChhHHHHHH----hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           86 LGIHSMFVPMVRL---SCCIMCIIFFL----FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        86 ~gl~~~f~~~~~~---~p~p~~~i~~~----~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      ++...+|+..-..   ....  ..|++    ++.++++|+++|||+.|+.++.++|+.+.-|
T Consensus       104 ld~~~~f~~~l~rd~~~~~k--~~~lK~L~~Lg~~~~~~vivDDs~~~~~~~~~ngi~i~~~  163 (195)
T 2hhl_A          104 LDRWGVFRARLFRESCVFHR--GNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSW  163 (195)
T ss_dssp             HCCSSCEEEEECGGGCEEET--TEEECCGGGSSSCGGGEEEEESCGGGGTTCGGGEEECCCC
T ss_pred             hCCcccEEEEEEcccceecC--CceeeeHhHhCCChhHEEEEECCHHHhhhCccCccEEeee
Confidence            9999988765211   0011  34444    5677799999999999999999999987654

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=99.58  E-value=5e-15  Score=115.21  Aligned_cols=93  Identities=13%  Similarity=0.076  Sum_probs=78.1

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---CCCCCccccc----ccCCChhHHHHHH----hhCCCc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMFVPMV----RLSCCIMCIIFFL----FFFSIS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---gl~~~f~~~~----~~~p~p~~~i~~~----~~~~~~  115 (149)
                      ..++||+.++|+.|+++|++++|+||++... ++..++.+   |+..+|+.+.    +.||+|  .+|..    .+++|+
T Consensus       129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~~~~l~~~fd~i~~~~~~~KP~p--~~~~~~~~~lg~~p~  205 (261)
T 1yns_A          129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEA-QKLLFGHSTEGDILELVDGHFDTKIGHKVES--ESYRKIADSIGCSTN  205 (261)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHTBTTBCCGGGCSEEECGGGCCTTCH--HHHHHHHHHHTSCGG
T ss_pred             cccCcCHHHHHHHHHhCCCeEEEEeCCCHHH-HHHHHHhhcccChHhhccEEEecCCCCCCCH--HHHHHHHHHhCcCcc
Confidence            5789999999999999999999999999887 68888854   5888887642    256666  66654    678889


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|++++||.++|.+|++|||+++.+.+
T Consensus       206 ~~l~VgDs~~di~aA~~aG~~~i~v~~  232 (261)
T 1yns_A          206 NILFLTDVTREASAAEEADVHVAVVVR  232 (261)
T ss_dssp             GEEEEESCHHHHHHHHHTTCEEEEECC
T ss_pred             cEEEEcCCHHHHHHHHHCCCEEEEEeC
Confidence            999999999999999999999987643

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=99.57  E-value=1.4e-15  Score=116.90  Aligned_cols=80  Identities=16%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc------cCCChhHHHHHHhhCCCcceEEEe
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR------LSCCIMCIIFFLFFFSISAFILFV  121 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~------~~p~p~~~i~~~~~~~~~~~l~~e  121 (149)
                      .++||+.++|+.|+++|++++++||++... +...++.+|+..+|+.+..      .+|.|          .+.+|++|+
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~f~~~~~~~k~~~~k~~~----------~~~~~~~vG  212 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRFV-AKWVAEELGLDDYFAEVLPHEKAEKVKEVQ----------QKYVTAMVG  212 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEECSCCGGGHHHHHHHHH----------TTSCEEEEE
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCChhHhHhcCHHHHHHHHHHHH----------hcCCEEEEe
Confidence            578999999999999999999999999988 7999999999998876532      23333          223899999


Q ss_pred             ehHhHHHHHHHhCCchh
Q 032013          122 DLFCFMYAAAYVGCDLY  138 (149)
Q Consensus       122 Ds~~gi~aa~~ag~~~~  138 (149)
                      |+.|++.+|++||+.+.
T Consensus       213 D~~nDi~~~~~Ag~~va  229 (280)
T 3skx_A          213 DGVNDAPALAQADVGIA  229 (280)
T ss_dssp             CTTTTHHHHHHSSEEEE
T ss_pred             CCchhHHHHHhCCceEE
Confidence            99999999999997543

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=99.56  E-value=2.3e-14  Score=110.40  Aligned_cols=58  Identities=28%  Similarity=0.335  Sum_probs=44.4

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe---CCCchHHHHHHHHHcCC
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLGI   88 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT---~~~~~~i~~~~l~~~gl   88 (149)
                      .++++++||+||||++.          ..+.|++.+++++|+++|++++++|   +++... ....++.+|+
T Consensus        15 ~~~~~v~~DlDGTLl~~----------~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~-~~~~~~~lg~   75 (271)
T 1vjr_A           15 DKIELFILDMDGTFYLD----------DSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQD-YVRKLRNMGV   75 (271)
T ss_dssp             GGCCEEEECCBTTTEET----------TEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHH-HHHHHHHTTC
T ss_pred             cCCCEEEEcCcCcEEeC----------CEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHH-HHHHHHHcCC
Confidence            34789999999999983          1467899999999999999999999   444444 3444444443

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=99.55  E-value=2.6e-14  Score=109.88  Aligned_cols=47  Identities=21%  Similarity=0.217  Sum_probs=39.9

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~   77 (149)
                      ++++|+||+||||+++      .    ...+++.+.++.++++|+++.++||++...
T Consensus         4 ~~k~v~fDlDGTL~~~------~----~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~   50 (264)
T 1yv9_A            4 DYQGYLIDLDGTIYLG------K----EPIPAGKRFVERLQEKDLPFLFVTNNTTKS   50 (264)
T ss_dssp             SCCEEEECCBTTTEET------T----EECHHHHHHHHHHHHTTCCEEEEECCCSSC
T ss_pred             cCCEEEEeCCCeEEeC------C----EECcCHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            5899999999999983      1    245889999999999999999999987543

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=99.55  E-value=2.8e-14  Score=108.49  Aligned_cols=60  Identities=17%  Similarity=0.148  Sum_probs=44.6

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe---CCCchHHHHHHHHHcC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLG   87 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT---~~~~~~i~~~~l~~~g   87 (149)
                      ++|+|+||+||||++.      .++...+.++..++++.++++|+++.++|   +++... +...++.+|
T Consensus        11 ~~k~i~fDlDGTLl~s------~~~~~~~~~~~~~a~~~l~~~G~~~~~~t~~~gr~~~~-~~~~l~~~g   73 (271)
T 2x4d_A           11 GVRGVLLDISGVLYDS------GAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAASRAE-LVGQLQRLG   73 (271)
T ss_dssp             TCCEEEECCBTTTEEC------CTTTCEECTTHHHHHHHHHHSSSEEEEECCCCSSCHHH-HHHHHHHTT
T ss_pred             cCCEEEEeCCCeEEec------CCCCCccCcCHHHHHHHHHHCCCcEEEEECCCCCCHHH-HHHHHHHCC
Confidence            4899999999999983      21122467889999999999999999999   655554 344444443

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=99.55  E-value=3e-15  Score=119.97  Aligned_cols=93  Identities=14%  Similarity=0.032  Sum_probs=76.0

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc--------------c--ccCCChhHHHHHH
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--------------V--RLSCCIMCIIFFL  109 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~--------------~--~~~p~p~~~i~~~  109 (149)
                      ..+++||+.++|+.|+++|++++++||+.... ++..++.+|+..+|...              .  ..+|+|.....+.
T Consensus       176 ~~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~-~~~~~~~lgl~~~~~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~~  254 (335)
T 3n28_A          176 TLPLMPELPELVATLHAFGWKVAIASGGFTYF-SDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTLA  254 (335)
T ss_dssp             TCCCCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEEEEEEEEETTEEEEEEESCCCCHHHHHHHHHHHH
T ss_pred             hCCcCcCHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCCeEEeeeeEeeCCeeeeeecccccChhhhHHHHHHHH
Confidence            35789999999999999999999999998887 79999999998877642              1  1245553333333


Q ss_pred             --hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          110 --FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       110 --~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                        .++++++|++|.|+.|++.+|++||+.+.+
T Consensus       255 ~~lgi~~~~~v~vGDs~nDi~~a~~aG~~va~  286 (335)
T 3n28_A          255 QQYDVEIHNTVAVGDGANDLVMMAAAGLGVAY  286 (335)
T ss_dssp             HHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE
T ss_pred             HHcCCChhhEEEEeCCHHHHHHHHHCCCeEEe
Confidence              668889999999999999999999998765

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=99.54  E-value=9.1e-15  Score=107.03  Aligned_cols=105  Identities=15%  Similarity=0.069  Sum_probs=72.0

Q ss_pred             ccEEEEecCCcccccccccc-------------------------------------c--cCCCCccCccHHHHHHHHHH
Q 032013           22 PRLVVFDLDYTLWPFYCECC-------------------------------------Y--EDEIPYLYPHAKGILEALKE   62 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~-------------------------------------~--~~~~~~~~pg~~e~L~~Lk~   62 (149)
                      .++|+||+||||+|++..+.                                     .  ..+..+++||+.++|++|++
T Consensus         4 ~~~viFD~DGtL~Ds~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~   83 (180)
T 3bwv_A            4 RQRIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLKHMIPEHEGLVMDILKEPGFFRNLDVMPHAQEVVKQLNE   83 (180)
T ss_dssp             CCEEEEETBTTTBCHHHHHHHHHHHHSCCCCCGGGCTTCCC--------CHHHHHHHSTTGGGSCCBCTTHHHHHHHHTT
T ss_pred             ccEEEEeCCCcccccHHHHHHHHHHHhCCCCCHHHHcCccHHHHCCchHHHHHHHHhCcchhccCCCCcCHHHHHHHHHh
Confidence            47899999999999754210                                     0  01235789999999999998


Q ss_pred             CCceEEEEeCC---CchH-HHHHHHHH-cCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCch
Q 032013           63 KGIHVAVASRS---PAPD-IAKTFLHK-LGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDL  137 (149)
Q Consensus        63 ~Gi~i~IaT~~---~~~~-i~~~~l~~-~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~  137 (149)
                      + ++++|+||+   +... .....++. ++...+++.+...  +..       .  .++|+++|||++|+.  ++|| ++
T Consensus        84 ~-~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~~~~~~i~~~--~~~-------~--l~~~l~ieDs~~~i~--~aaG-~~  148 (180)
T 3bwv_A           84 H-YDIYIATAAMDVPTSFHDKYEWLLEYFPFLDPQHFVFCG--RKN-------I--ILADYLIDDNPKQLE--IFEG-KS  148 (180)
T ss_dssp             T-SEEEEEECC--CCSHHHHHHHHHHHHCTTSCGGGEEECS--CGG-------G--BCCSEEEESCHHHHH--HCSS-EE
T ss_pred             c-CCEEEEeCCCCcchHHHHHHHHHHHHcCCCCcccEEEeC--CcC-------e--ecccEEecCCcchHH--HhCC-Ce
Confidence            5 999999998   3221 12444555 5665555443322  220       1  178999999999995  4689 88


Q ss_pred             hhhh
Q 032013          138 YVYK  141 (149)
Q Consensus       138 ~~~~  141 (149)
                      +.+.
T Consensus       149 i~~~  152 (180)
T 3bwv_A          149 IMFT  152 (180)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8764

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=99.52  E-value=1.1e-15  Score=114.50  Aligned_cols=44  Identities=11%  Similarity=-0.119  Sum_probs=36.1

Q ss_pred             ccCCChhHHHHHH--hhCCCcceEEEeeh-HhHHHHHHHhCCchhhh
Q 032013           97 RLSCCIMCIIFFL--FFFSISAFILFVDL-FCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        97 ~~~p~p~~~i~~~--~~~~~~~~l~~eDs-~~gi~aa~~ag~~~~~~  140 (149)
                      ..+|+|.+...+.  .++++++|++|.|+ .|++.+|++||+.++.+
T Consensus       174 ~~kpk~~~~~~~~~~lgi~~~~~i~iGD~~~nDi~~~~~aG~~~~~v  220 (250)
T 2c4n_A          174 VGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILV  220 (250)
T ss_dssp             CSTTSTHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCEEEEE
T ss_pred             eCCCCHHHHHHHHHHcCCCcceEEEECCCchhHHHHHHHcCCeEEEE
Confidence            4578886655554  66888999999999 69999999999997764

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=99.51  E-value=1.3e-13  Score=106.10  Aligned_cols=56  Identities=18%  Similarity=0.116  Sum_probs=43.6

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC---CchHHHHHHHHHcC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---PAPDIAKTFLHKLG   87 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---~~~~i~~~~l~~~g   87 (149)
                      ++|+|+||+||||+++      +    .+.|++.++|++++++|++++++||+   +... +...++.+|
T Consensus         7 ~~kli~~DlDGTLl~~------~----~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~-~~~~l~~lg   65 (268)
T 3qgm_A            7 DKKGYIIDIDGVIGKS------V----TPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRI-LLERLRSFG   65 (268)
T ss_dssp             CCSEEEEECBTTTEET------T----EECHHHHHHHHHHHHTTCEEEEEECCSSSCHHH-HHHHHHHTT
T ss_pred             cCCEEEEcCcCcEECC------C----EeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHH-HHHHHHHCC
Confidence            4899999999999983      1    36789999999999999999999994   4343 344444443

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=99.49  E-value=1.1e-13  Score=106.82  Aligned_cols=57  Identities=21%  Similarity=0.332  Sum_probs=44.0

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC---CchHHHHHHHHHcCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---PAPDIAKTFLHKLGI   88 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---~~~~i~~~~l~~~gl   88 (149)
                      ++|+|+||+||||+++      +    ...|++.++|++++++|++++++||+   +... +...++.+|+
T Consensus         4 ~~kli~~DlDGTLl~~------~----~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~-~~~~l~~lg~   63 (264)
T 3epr_A            4 AYKGYLIDLDGTIYKG------K----SRIPAGERFIERLQEKGIPYMLVTNNTTRTPES-VQEMLRGFNV   63 (264)
T ss_dssp             CCCEEEECCBTTTEET------T----EECHHHHHHHHHHHHHTCCEEEEECCCSSCHHH-HHHHHHTTTC
T ss_pred             CCCEEEEeCCCceEeC------C----EECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHCCC
Confidence            4899999999999983      2    23389999999999999999999954   4444 3555555544

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.49  E-value=1e-13  Score=106.81  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=44.3

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC---CchHHHHHHHHHcCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---PAPDIAKTFLHKLGI   88 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~---~~~~i~~~~l~~~gl   88 (149)
                      ++|+|+||+||||+++      .    .+.|++.++|++|+++|++++++||+   +... +...++.+|+
T Consensus         5 ~~kli~~DlDGTLl~~------~----~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~-~~~~l~~lg~   64 (266)
T 3pdw_A            5 TYKGYLIDLDGTMYNG------T----EKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQ-VADKLVSFDI   64 (266)
T ss_dssp             CCSEEEEECSSSTTCH------H----HHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHH-HHHHHHHTTC
T ss_pred             cCCEEEEeCcCceEeC------C----EeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCC
Confidence            4899999999999983      1    35689999999999999999999994   4344 3445555544

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=99.48  E-value=4.7e-15  Score=110.54  Aligned_cols=114  Identities=13%  Similarity=-0.008  Sum_probs=87.3

Q ss_pred             CccEEEEecCCcccccccccccc--------------CCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYE--------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~--------------~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~   86 (149)
                      ..+++++|+|+||+++.......              ...+..+||+.++|+++++. ++++|+|++++.. ++.+++.+
T Consensus        14 ~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~-~~i~I~T~~~~~~-a~~vl~~l   91 (181)
T 2ght_A           14 DKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAKY-ADPVADLL   91 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHHH
T ss_pred             CCeEEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC-CCEEEEcCCCHHH-HHHHHHHH
Confidence            45789999999999852110000              01256899999999999998 9999999999998 89999999


Q ss_pred             CCCCCcccccccC---CChhHHHHHH----hhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013           87 GIHSMFVPMVRLS---CCIMCIIFFL----FFFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus        87 gl~~~f~~~~~~~---p~p~~~i~~~----~~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                      +...+|...-...   ..+  ..|++    .+.++++|+++|||+.++.++.++|+++.
T Consensus        92 d~~~~f~~~~~rd~~~~~k--~~~~k~L~~Lg~~~~~~vivdDs~~~~~~~~~ngi~i~  148 (181)
T 2ght_A           92 DKWGAFRARLFRESCVFHR--GNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVA  148 (181)
T ss_dssp             CTTCCEEEEECGGGSEEET--TEEECCGGGTCSCGGGEEEECSCGGGGTTCTTSBCCCC
T ss_pred             CCCCcEEEEEeccCceecC--CcEeccHHHhCCCcceEEEEeCCHHHhccCcCCEeEec
Confidence            9988887652110   011  23433    56777999999999999999999999864

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=99.45  E-value=5.9e-13  Score=101.24  Aligned_cols=58  Identities=14%  Similarity=0.119  Sum_probs=49.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      +|+++||+||||++.      +.   .+.+.+.++|++++++|++++++||++... +..+++.+|+.
T Consensus         3 ~kli~~DlDGTLl~~------~~---~i~~~~~~al~~l~~~G~~v~i~TGR~~~~-~~~~~~~l~~~   60 (231)
T 1wr8_A            3 IKAISIDIDGTITYP------NR---MIHEKALEAIRRAESLGIPIMLVTGNTVQF-AEAASILIGTS   60 (231)
T ss_dssp             CCEEEEESTTTTBCT------TS---CBCHHHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHHTCC
T ss_pred             eeEEEEECCCCCCCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCChhH-HHHHHHHcCCC
Confidence            789999999999983      22   477899999999999999999999999887 57777766653

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=99.45  E-value=9.3e-14  Score=107.37  Aligned_cols=46  Identities=26%  Similarity=0.418  Sum_probs=39.0

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~   77 (149)
                      +++++||+||||+++      .    ...|++.++|++++++|++++++||++...
T Consensus         1 ik~i~~D~DGtL~~~------~----~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~   46 (263)
T 1zjj_A            1 MVAIIFDMDGVLYRG------N----RAIPGVRELIEFLKERGIPFAFLTNNSTKT   46 (263)
T ss_dssp             CEEEEEECBTTTEET------T----EECTTHHHHHHHHHHHTCCEEEEESCCSSC
T ss_pred             CeEEEEeCcCceEeC------C----EeCccHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            478999999999973      1    245899999999999999999999987643

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=99.45  E-value=1.8e-13  Score=107.51  Aligned_cols=106  Identities=13%  Similarity=0.001  Sum_probs=85.6

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      .+.+++|.|+++...      -....+++||+.++|+.|+++|++++|+||++... ++..++.+|+..+|+.+.   |.
T Consensus       143 ~~~i~~~~d~~~~~~------~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f~~i~---~~  212 (287)
T 3a1c_A          143 KTAVIVARNGRVEGI------IAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVIAEVL---PH  212 (287)
T ss_dssp             CEEEEEEETTEEEEE------EEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEECSCC---TT
T ss_pred             CeEEEEEECCEEEEE------EEeccccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhCCceeeeecC---hH
Confidence            578999999998762      11124689999999999999999999999999988 799999999998887653   34


Q ss_pred             hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013          102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus       102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                      +.....-..+.. ++|++++||.+++.+|++||+.+.
T Consensus       213 ~K~~~~~~l~~~-~~~~~vGDs~~Di~~a~~ag~~v~  248 (287)
T 3a1c_A          213 QKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIA  248 (287)
T ss_dssp             CHHHHHHHHTTT-CCEEEEECTTTCHHHHHHSSEEEE
T ss_pred             HHHHHHHHHhcC-CeEEEEECCHHHHHHHHHCCeeEE
Confidence            422322335666 899999999999999999999743

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=99.44  E-value=5.8e-13  Score=105.12  Aligned_cols=42  Identities=33%  Similarity=0.413  Sum_probs=37.5

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS   73 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~   73 (149)
                      +++|+||+||||++.      .    .+.|++.+++++|+++|++++++||+
T Consensus        21 ~k~i~~D~DGTL~~~------~----~~~~~~~~~l~~l~~~g~~~~~~Tn~   62 (306)
T 2oyc_A           21 AQGVLFDCDGVLWNG------E----RAVPGAPELLERLARAGKAALFVSNN   62 (306)
T ss_dssp             CSEEEECSBTTTEET------T----EECTTHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEECCCCcEecC------C----ccCcCHHHHHHHHHHCCCeEEEEECC
Confidence            789999999999973      1    47789999999999999999999974

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=99.41  E-value=5.1e-13  Score=102.01  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=53.1

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      ++|++++|+||||++.      +.   .+.|.+.++|++|+++|++++++||++... +...++.+++..+
T Consensus         4 m~kli~~DlDGTLl~~------~~---~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~-~~~~~~~l~~~~~   64 (227)
T 1l6r_A            4 MIRLAAIDVDGNLTDR------DR---LISTKAIESIRSAEKKGLTVSLLSGNVIPV-VYALKIFLGINGP   64 (227)
T ss_dssp             CCCEEEEEHHHHSBCT------TS---CBCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCCSC
T ss_pred             ceEEEEEECCCCCcCC------CC---cCCHHHHHHHHHHHHCCCEEEEECCCCcHH-HHHHHHHhCCCCe
Confidence            3789999999999983      22   477899999999999999999999999988 7899999888653

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=99.39  E-value=9.4e-13  Score=101.14  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=45.6

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      ++|+|+||+||||++.      ..   .+.+.+.++|++++++|++++++||++... +...++.++
T Consensus         4 M~kli~fDlDGTLl~~------~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~   60 (274)
T 3fzq_A            4 LYKLLILDIDGTLRDE------VY---GIPESAKHAIRLCQKNHCSVVICTGRSMGT-IQDDVLSLG   60 (274)
T ss_dssp             CCCEEEECSBTTTBBT------TT---BCCHHHHHHHHHHHHTTCEEEEECSSCTTT-SCHHHHTTC
T ss_pred             cceEEEEECCCCCCCC------CC---cCCHHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHcC
Confidence            4899999999999983      22   477889999999999999999999998655 344444433

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.35  E-value=4.1e-12  Score=98.69  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=51.1

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      +|+|+||+||||++.      ..   .+.+.+.++|++++++|++++++||++... +..+++.+++.
T Consensus         6 ~kli~fDlDGTLl~~------~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~   63 (290)
T 3dnp_A            6 KQLLALNIDGALLRS------NG---KIHQATKDAIEYVKKKGIYVTLVTNRHFRS-AQKIAKSLKLD   63 (290)
T ss_dssp             CCEEEECCCCCCSCT------TS---CCCHHHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHTTCC
T ss_pred             ceEEEEcCCCCCCCC------CC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCC
Confidence            799999999999983      22   477899999999999999999999999988 68888888775

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=99.34  E-value=5.2e-12  Score=97.63  Aligned_cols=57  Identities=26%  Similarity=0.367  Sum_probs=50.3

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl   88 (149)
                      +|+|+||+||||++.      ..   .+.+.+.++|++++++|++++++||++... +...++.+++
T Consensus         5 ~kli~fDlDGTLl~~------~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~   61 (279)
T 4dw8_A            5 YKLIVLDLDGTLTNS------KK---EISSRNRETLIRIQEQGIRLVLASGRPTYG-IVPLANELRM   61 (279)
T ss_dssp             CCEEEECCCCCCSCT------TS---CCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTG
T ss_pred             ceEEEEeCCCCCCCC------CC---ccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHhCC
Confidence            799999999999983      32   477899999999999999999999999988 6888888776

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=99.33  E-value=3.2e-12  Score=98.81  Aligned_cols=58  Identities=24%  Similarity=0.393  Sum_probs=42.9

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      +|+|+||+||||++.      ..   .+.+.+.++|++++++|++++++||++... +..+++.+++.
T Consensus         5 ~kli~~DlDGTLl~~------~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~   62 (279)
T 3mpo_A            5 IKLIAIDIDGTLLNE------KN---ELAQATIDAVQAAKAQGIKVVLCTGRPLTG-VQPYLDAMDID   62 (279)
T ss_dssp             CCEEEECC--------------------CHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCC
T ss_pred             eEEEEEcCcCCCCCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            799999999999983      22   477899999999999999999999999988 68888887764

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=99.25  E-value=1.2e-12  Score=102.04  Aligned_cols=90  Identities=12%  Similarity=0.062  Sum_probs=70.3

Q ss_pred             cCccHHHHHHHHHHC-CceEEEEeCC---------------------CchHHHHHHHHHcCCCCCcccc-----------
Q 032013           49 LYPHAKGILEALKEK-GIHVAVASRS---------------------PAPDIAKTFLHKLGIHSMFVPM-----------   95 (149)
Q Consensus        49 ~~pg~~e~L~~Lk~~-Gi~i~IaT~~---------------------~~~~i~~~~l~~~gl~~~f~~~-----------   95 (149)
                      ..+++.++++.++++ |+++++.|+.                     .... +...++..|+..+|...           
T Consensus       123 ~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~  201 (289)
T 3gyg_A          123 SKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLA-IEKICEEYGVSVNINRCNPLAGDPEDSY  201 (289)
T ss_dssp             CHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHH-HHHHHHHHTEEEEEEECCGGGTCCTTEE
T ss_pred             CHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHH-HHHHHHHcCCCEEEEEccccccCCCCce
Confidence            346788999999998 9999999987                     4455 57888888887655432           


Q ss_pred             -----cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           96 -----VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        96 -----~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                           ...+++|.+..++.  .++++++|++|.||.|++.++++||+.+.+
T Consensus       202 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~GDs~~D~~~~~~ag~~~~~  252 (289)
T 3gyg_A          202 DVDFIPIGTGKNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVGNGYLL  252 (289)
T ss_dssp             EEEEEESCCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSEEEEC
T ss_pred             EEEEEeCCCCHHHHHHHHHHHcCCChhhEEEEcCCHHHHHHHHhCCcEEEE
Confidence                 23366776666665  567789999999999999999999987665

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=99.16  E-value=4.3e-11  Score=94.11  Aligned_cols=113  Identities=12%  Similarity=-0.004  Sum_probs=80.1

Q ss_pred             cEEEEecCCccccccccc----------cc-------cCCCCccCccHHHHHHHHHHCCceEEEEeCCCch----HHHHH
Q 032013           23 RLVVFDLDYTLWPFYCEC----------CY-------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP----DIAKT   81 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~----------~~-------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~----~i~~~   81 (149)
                      .+|+||+||||+++..+.          +.       .....+++||+.++|+.|+++|++++++||++..    . +..
T Consensus        59 ~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~-T~~  137 (260)
T 3pct_A           59 KAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAG-TVD  137 (260)
T ss_dssp             EEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHH-HHH
T ss_pred             CEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHH-HHH
Confidence            499999999999985442          11       2234689999999999999999999999999754    5 789


Q ss_pred             HHHHcCCCCCcc--ccc-ccCCChhHHHHHH-hhCCCcceEEEeehHhHHHH--------HHHhCCch
Q 032013           82 FLHKLGIHSMFV--PMV-RLSCCIMCIIFFL-FFFSISAFILFVDLFCFMYA--------AAYVGCDL  137 (149)
Q Consensus        82 ~l~~~gl~~~f~--~~~-~~~p~p~~~i~~~-~~~~~~~~l~~eDs~~gi~a--------a~~ag~~~  137 (149)
                      .|+.+|+..+++  ... ..++...+ .+.+ ...+..-++.+-|+.+.+.+        +++|+.+.
T Consensus       138 ~L~~lGi~~~~~~~Lilr~~~~~K~~-~r~~L~~~gy~iv~~iGD~~~Dl~~~~~~~~~~~r~a~v~~  204 (260)
T 3pct_A          138 DMKRLGFTGVNDKTLLLKKDKSNKSV-RFKQVEDMGYDIVLFVGDNLNDFGDATYKKSNAERRDFVAK  204 (260)
T ss_dssp             HHHHHTCCCCSTTTEEEESSCSSSHH-HHHHHHTTTCEEEEEEESSGGGGCGGGTTCCHHHHHHHHHH
T ss_pred             HHHHcCcCccccceeEecCCCCChHH-HHHHHHhcCCCEEEEECCChHHcCcccccCCHHHHHHHHHH
Confidence            999999987653  121 12333322 3333 22244557888899999987        55655444

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.15  E-value=5.5e-11  Score=91.31  Aligned_cols=49  Identities=20%  Similarity=0.389  Sum_probs=41.2

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCch
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~   76 (149)
                      .++|+|+||+||||++.     ..   ..+.+.+.++|++++++|++++++||++..
T Consensus        10 ~miKli~~DlDGTLl~~-----~~---~~i~~~~~~al~~l~~~G~~~~iaTGR~~~   58 (268)
T 3r4c_A           10 HMIKVLLLDVDGTLLSF-----ET---HKVSQSSIDALKKVHDSGIKIVIATGRAAS   58 (268)
T ss_dssp             SCCCEEEECSBTTTBCT-----TT---CSCCHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CceEEEEEeCCCCCcCC-----CC---CcCCHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence            35899999999999982     12   147788999999999999999999999743

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=7.9e-11  Score=91.81  Aligned_cols=62  Identities=32%  Similarity=0.412  Sum_probs=53.3

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      .++|+++||+||||++.      ..   .+.+.+.++|++++++|++++++||++... +..+++.+++..+
T Consensus        19 ~~~kli~~DlDGTLl~~------~~---~i~~~~~~al~~l~~~G~~v~iaTGR~~~~-~~~~~~~l~~~~~   80 (285)
T 3pgv_A           19 GMYQVVASDLDGTLLSP------DH---FLTPYAKETLKLLTARGINFVFATGRHYID-VGQIRDNLGIRSY   80 (285)
T ss_dssp             --CCEEEEECCCCCSCT------TS---CCCHHHHHHHHHHHTTTCEEEEECSSCGGG-GHHHHHHHCSCCE
T ss_pred             CcceEEEEeCcCCCCCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHhcCCCcc
Confidence            34899999999999983      32   477899999999999999999999999999 6999999998754

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=99.13  E-value=3e-11  Score=95.09  Aligned_cols=109  Identities=11%  Similarity=-0.059  Sum_probs=76.2

Q ss_pred             CCccEEEEecCCccccccccc----------cc-------cCCCCccCccHHHHHHHHHHCCceEEEEeCCCch---HHH
Q 032013           20 NLPRLVVFDLDYTLWPFYCEC----------CY-------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---DIA   79 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~----------~~-------~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~---~i~   79 (149)
                      ..+.+|+||+||||+++..++          +.       .....+++||+.++|+.|+++|++++++||++..   ..+
T Consensus        56 ~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T  135 (262)
T 3ocu_A           56 GKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGT  135 (262)
T ss_dssp             TCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHH
T ss_pred             CCCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHHHH
Confidence            346799999999999975431          11       1234689999999999999999999999999763   227


Q ss_pred             HHHHHHcCCCCCcc--cccc-cCCChhHHHHHH-hhCCCcceEEEeehHhHHHH
Q 032013           80 KTFLHKLGIHSMFV--PMVR-LSCCIMCIIFFL-FFFSISAFILFVDLFCFMYA  129 (149)
Q Consensus        80 ~~~l~~~gl~~~f~--~~~~-~~p~p~~~i~~~-~~~~~~~~l~~eDs~~gi~a  129 (149)
                      ...|+.+|+..+++  .... ..+... ..+.+ ...+-..++.+-|+.+.+.+
T Consensus       136 ~~~L~~lGi~~~~~~~Lilr~~~~~K~-~~r~~l~~~Gy~iv~~vGD~~~Dl~~  188 (262)
T 3ocu_A          136 IDDMKRLGFNGVEESAFYLKKDKSAKA-ARFAEIEKQGYEIVLYVGDNLDDFGN  188 (262)
T ss_dssp             HHHHHHHTCSCCSGGGEEEESSCSCCH-HHHHHHHHTTEEEEEEEESSGGGGCS
T ss_pred             HHHHHHcCcCcccccceeccCCCCChH-HHHHHHHhcCCCEEEEECCChHHhcc
Confidence            88999999987652  2211 122222 23333 22233457888899999987

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=99.12  E-value=1.6e-10  Score=83.21  Aligned_cols=95  Identities=15%  Similarity=-0.009  Sum_probs=61.7

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC---chHHHHHHHHHcCCCCCccccccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~---~~~i~~~~l~~~gl~~~f~~~~~~   98 (149)
                      +++|+||+||||+++     ...+-....|++.++|+.|+++|++++++||++   ... +...++..|+..++.  .  
T Consensus         3 ~k~i~~DlDGTL~~~-----~~~~i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~-~~~~l~~~gi~~~~I--~--   72 (142)
T 2obb_A            3 AMTIAVDFDGTIVEH-----RYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDE-AIEWCRARGLEFYAA--N--   72 (142)
T ss_dssp             CCEEEECCBTTTBCS-----CTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHH-HHHHHHTTTCCCSEE--S--
T ss_pred             CeEEEEECcCCCCCC-----CCccccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHH-HHHHHHHcCCCeEEE--E--
Confidence            678999999999984     111112456899999999999999999999997   345 567778888754322  2  


Q ss_pred             CCChhHHHHHH-hhCCCcceEEEeehHhH
Q 032013           99 SCCIMCIIFFL-FFFSISAFILFVDLFCF  126 (149)
Q Consensus        99 ~p~p~~~i~~~-~~~~~~~~l~~eDs~~g  126 (149)
                      .-+|...++.. ..-.+..-+++||-..|
T Consensus        73 ~n~P~~~~~~~~~~rK~~~~~fIDDR~~~  101 (142)
T 2obb_A           73 KDYPEEERDHQGFSRKLKADLFIDDRNVG  101 (142)
T ss_dssp             SSSTTC---CCSCCSSCCCSEEECTTSTT
T ss_pred             cCCchhhhcchhhcCCcCCCEEeeccccC
Confidence            23332123211 11223455778887654

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=99.10  E-value=2e-10  Score=89.64  Aligned_cols=65  Identities=26%  Similarity=0.334  Sum_probs=54.0

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC-Cccccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPMV   96 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~-~f~~~~   96 (149)
                      +++|++|+||||++.      +.   ...+.+.++|++|+++|++++++|||+... +..+++.+++.. ++.+.+
T Consensus         9 ~~li~~DlDGTLl~~------~~---~~~~~~~~~l~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~~I~~N   74 (275)
T 1xvi_A            9 PLLVFSDLDGTLLDS------HS---YDWQPAAPWLTRLREANVPVILCSSKTSAE-MLYLQKTLGLQGLPLIAEN   74 (275)
T ss_dssp             CEEEEEECTTTTSCS------SC---CSCCTTHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHTTCTTSCEEEGG
T ss_pred             ceEEEEeCCCCCCCC------CC---cCCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCCCeEEEeC
Confidence            789999999999983      22   345678999999999999999999999998 799999999875 454443

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=99.09  E-value=1.8e-10  Score=89.89  Aligned_cols=60  Identities=22%  Similarity=0.428  Sum_probs=52.7

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      ++|+++||+||||++.      +.   .+.+.+.++|++++++|++++++|||+... +..+++.+++..
T Consensus         4 m~kli~~DlDGTLl~~------~~---~i~~~~~~aL~~l~~~Gi~vviaTGR~~~~-~~~~~~~l~l~~   63 (282)
T 1rkq_A            4 AIKLIAIDMDGTLLLP------DH---TISPAVKNAIAAARARGVNVVLTTGRPYAG-VHNYLKELHMEQ   63 (282)
T ss_dssp             CCCEEEECCCCCCSCT------TS---CCCHHHHHHHHHHHHTTCEEEEECSSCGGG-THHHHHHTTCCS
T ss_pred             cceEEEEeCCCCCCCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCC
Confidence            3799999999999983      22   477899999999999999999999999998 689999998864

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=99.08  E-value=1.2e-10  Score=92.13  Aligned_cols=59  Identities=17%  Similarity=0.203  Sum_probs=51.3

Q ss_pred             CccEEEEecCCccccccccccc-cCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH--HHcC-CC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCY-EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL--HKLG-IH   89 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~-~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l--~~~g-l~   89 (149)
                      ++|+|+||+||||++      . +.   .+.+.+.++|++|+++|++++++|||+... +..++  +.++ +.
T Consensus        26 ~ikli~~DlDGTLl~------~~~~---~is~~~~~al~~l~~~Gi~v~iaTGR~~~~-~~~~~~~~~l~~~~   88 (301)
T 2b30_A           26 DIKLLLIDFDGTLFV------DKDI---KVPSENIDAIKEAIEKGYMVSICTGRSKVG-ILSAFGEENLKKMN   88 (301)
T ss_dssp             CCCEEEEETBTTTBC------CTTT---CSCHHHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHCHHHHHHHT
T ss_pred             cccEEEEECCCCCcC------CCCC---ccCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHhhHHhhcccc
Confidence            379999999999998      3 22   477889999999999999999999999988 68888  8887 65

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=99.07  E-value=2.7e-10  Score=88.19  Aligned_cols=58  Identities=22%  Similarity=0.099  Sum_probs=50.8

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      +|+++||+||||++.      ++   .+.+.+.++|++ +++|++++++|||+... +..+++.+++..
T Consensus         2 ikli~~DlDGTLl~~------~~---~i~~~~~~al~~-~~~Gi~v~iaTGR~~~~-~~~~~~~l~~~~   59 (268)
T 1nf2_A            2 YRVFVFDLDGTLLND------NL---EISEKDRRNIEK-LSRKCYVVFASGRMLVS-TLNVEKKYFKRT   59 (268)
T ss_dssp             BCEEEEECCCCCSCT------TS---CCCHHHHHHHHH-HTTTSEEEEECSSCHHH-HHHHHHHHSSSC
T ss_pred             ccEEEEeCCCcCCCC------CC---ccCHHHHHHHHH-HhCCCEEEEECCCChHH-HHHHHHHhCCCC
Confidence            789999999999983      22   467889999999 99999999999999998 689999999865

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=99.06  E-value=2.7e-10  Score=88.96  Aligned_cols=61  Identities=25%  Similarity=0.335  Sum_probs=52.0

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      ++|+|+||+||||++.      ++   .+.+...+++++++++|++++++||++... +...++.+++..+
T Consensus         3 mikli~~DlDGTLl~~------~~---~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~   63 (288)
T 1nrw_A            3 AMKLIAIDLDGTLLNS------KH---QVSLENENALRQAQRDGIEVVVSTGRAHFD-VMSIFEPLGIKTW   63 (288)
T ss_dssp             -CCEEEEECCCCCSCT------TS---CCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHGGGTCCCE
T ss_pred             ceEEEEEeCCCCCCCC------CC---ccCHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCCc
Confidence            4799999999999983      22   467888999999999999999999999988 6888888887653

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=99.03  E-value=2.2e-10  Score=89.33  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=52.2

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      .++|+|+||+||||++.      +.  ..+.+.+.++|++++++|++++++||++... +..+++.++...
T Consensus        19 ~~~kli~~DlDGTLl~~------~~--~~i~~~~~~al~~l~~~G~~v~iaTGR~~~~-~~~~~~~l~~~~   80 (283)
T 3dao_A           19 GMIKLIATDIDGTLVKD------GS--LLIDPEYMSVIDRLIDKGIIFVVCSGRQFSS-EFKLFAPIKHKL   80 (283)
T ss_dssp             CCCCEEEECCBTTTBST------TC--SCCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHTGGGGGGC
T ss_pred             cCceEEEEeCcCCCCCC------CC--CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCc
Confidence            44899999999999983      22  1477899999999999999999999999988 688888877653

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=99.00  E-value=7e-10  Score=84.88  Aligned_cols=59  Identities=29%  Similarity=0.338  Sum_probs=50.8

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      +|+|+||+||||++.      ++   .+.+.+.++|++++++|++++++||++... +...++.+++..
T Consensus         3 ~kli~~DlDGTLl~~------~~---~i~~~~~~al~~l~~~G~~~~~aTGR~~~~-~~~~~~~l~~~~   61 (258)
T 2pq0_A            3 RKIVFFDIDGTLLDE------QK---QLPLSTIEAVRRLKQSGVYVAIATGRAPFM-FEHVRKQLGIDS   61 (258)
T ss_dssp             CCEEEECTBTTTBCT------TS---CCCHHHHHHHHHHHHTTCEEEEECSSCGGG-SHHHHHHHTCCC
T ss_pred             ceEEEEeCCCCCcCC------CC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHhcCCCE
Confidence            689999999999983      22   467889999999999999999999999988 688888887654

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=99.00  E-value=5.2e-10  Score=85.95  Aligned_cols=63  Identities=25%  Similarity=0.331  Sum_probs=51.7

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      +|+|+||+||||+ .     ..    .+ +.+.++|++|+++|++++++||++... +...++.+++..++.+.+
T Consensus         2 ikli~~DlDGTLl-~-----~~----~~-~~~~~~l~~l~~~g~~~~i~Tgr~~~~-~~~~~~~~~~~~~~I~~N   64 (249)
T 2zos_A            2 IRLIFLDIDKTLI-P-----GY----EP-DPAKPIIEELKDMGFEIIFNSSKTRAE-QEYYRKELEVETPFISEN   64 (249)
T ss_dssp             EEEEEECCSTTTC-T-----TS----CS-GGGHHHHHHHHHTTEEEEEBCSSCHHH-HHHHHHHHTCCSCEEETT
T ss_pred             ccEEEEeCCCCcc-C-----CC----Cc-HHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCccEEEeC
Confidence            6899999999999 4     11    12 458899999999999999999999988 688999999875554443

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=98.99  E-value=2.1e-10  Score=88.83  Aligned_cols=62  Identities=24%  Similarity=0.258  Sum_probs=49.5

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccH-HHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHA-KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~-~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~   93 (149)
                      +|+++||+||||++.      ++   .+.+.. .++|++|+++|++++++|||+... +...++.+++..++.
T Consensus         3 ~kli~~DlDGTLl~~------~~---~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~~I   65 (271)
T 1rlm_A            3 VKVIVTDMDGTFLND------AK---TYNQPRFMAQYQELKKRGIKFVVASGNQYYQ-LISFFPELKDEISFV   65 (271)
T ss_dssp             CCEEEECCCCCCSCT------TS---CCCHHHHHHHHHHHHHHTCEEEEECSSCHHH-HGGGCTTTTTTSEEE
T ss_pred             ccEEEEeCCCCCCCC------CC---cCCHHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHhcCCCCEEE
Confidence            689999999999983      22   366674 899999999999999999999888 577776666544443

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=98.98  E-value=5.3e-11  Score=90.52  Aligned_cols=113  Identities=12%  Similarity=-0.096  Sum_probs=81.5

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC-Cccccc--
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPMV--   96 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~-~f~~~~--   96 (149)
                      ..+.++++|+|+||+.+.... ..+-.+...||+.++|+++. +++.++|.|++.... ++.+++.++... +|...-  
T Consensus        32 ~~~~tLVLDLDeTLvh~~~~~-~~~~~v~~RPgl~eFL~~l~-~~yeivI~Tas~~~y-a~~vl~~LDp~~~~f~~rl~R  108 (204)
T 3qle_A           32 QRPLTLVITLEDFLVHSEWSQ-KHGWRTAKRPGADYFLGYLS-QYYEIVLFSSNYMMY-SDKIAEKLDPIHAFVSYNLFK  108 (204)
T ss_dssp             CCSEEEEEECBTTTEEEEEET-TTEEEEEECTTHHHHHHHHT-TTEEEEEECSSCHHH-HHHHHHHTSTTCSSEEEEECG
T ss_pred             CCCeEEEEeccccEEeeeccc-cCceeEEeCCCHHHHHHHHH-hCCEEEEEcCCcHHH-HHHHHHHhCCCCCeEEEEEEe
Confidence            346799999999999852110 01113678999999999998 679999999999998 899999999864 666421  


Q ss_pred             --ccCCChhHHHHHH----hhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013           97 --RLSCCIMCIIFFL----FFFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus        97 --~~~p~p~~~i~~~----~~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                        +.. .+  ..|.+    ++.++++|+++|||+.+.......|+++.
T Consensus       109 ~~c~~-~~--g~y~KdL~~Lgrdl~~vIiIDDsp~~~~~~p~N~I~I~  153 (204)
T 3qle_A          109 EHCVY-KD--GVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPME  153 (204)
T ss_dssp             GGSEE-ET--TEEECCGGGSCSCGGGEEEEESCTTTTTTCGGGEEECC
T ss_pred             cceeE-EC--CeeeecHHHhCCChHHEEEEECCHHHHhhCccCceEee
Confidence              110 11  22433    45667999999999998876666666543

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=98.52  E-value=5.9e-11  Score=92.32  Aligned_cols=89  Identities=17%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceEEEeehHhH
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCF  126 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l~~eDs~~g  126 (149)
                      .+++||+.++|++|+++|++++++||++... ++.+++++|+..+|+...   |.+...+.-..+..+++|+.+.|+.|+
T Consensus       135 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~f~~~~---p~~k~~~~~~l~~~~~~~~~VGD~~~D  210 (263)
T 2yj3_A          135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDK-VKELSKELNIQEYYSNLS---PEDKVRIIEKLKQNGNKVLMIGDGVND  210 (263)
Confidence            4689999999999999999999999999988 799999999998887653   333212222255677899999999999


Q ss_pred             HHHHHHhCCchhh
Q 032013          127 MYAAAYVGCDLYV  139 (149)
Q Consensus       127 i~aa~~ag~~~~~  139 (149)
                      +.+|++||+.+.+
T Consensus       211 ~~aa~~Agv~va~  223 (263)
T 2yj3_A          211 AAALALADVSVAM  223 (263)
Confidence            9999999976543

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=98.96  E-value=2.5e-09  Score=74.76  Aligned_cols=52  Identities=13%  Similarity=0.058  Sum_probs=40.3

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCch
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~   76 (149)
                      +|+++||+||||++.....   -....+.|++.+++++|+++|++++++||++..
T Consensus         1 ik~i~~DlDGTL~~~~~~~---~~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~   52 (126)
T 1xpj_A            1 MKKLIVDLDGTLTQANTSD---YRNVLPRLDVIEQLREYHQLGFEIVISTARNMR   52 (126)
T ss_dssp             CCEEEECSTTTTBCCCCSC---GGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTT
T ss_pred             CCEEEEecCCCCCCCCCCc---cccCCCCHHHHHHHHHHHhCCCeEEEEeCCChh
Confidence            4789999999999841100   001246789999999999999999999999863

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=98.92  E-value=5.9e-10  Score=87.69  Aligned_cols=59  Identities=20%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCcc-HHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPH-AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg-~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++|+|+||+||||++.      ..   .+.+. +.++|++++++|++++++||++... +...++.++..
T Consensus        36 ~iKli~fDlDGTLld~------~~---~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~   95 (304)
T 3l7y_A           36 SVKVIATDMDGTFLNS------KG---SYDHNRFQRILKQLQERDIRFVVASSNPYRQ-LREHFPDCHEQ   95 (304)
T ss_dssp             CCSEEEECCCCCCSCT------TS---CCCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHTTCTTTGGG
T ss_pred             eeEEEEEeCCCCCCCC------CC---ccCHHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHhCCC
Confidence            4899999999999983      22   35666 7899999999999999999999888 67777766653

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=98.87  E-value=2.8e-09  Score=82.25  Aligned_cols=52  Identities=21%  Similarity=0.232  Sum_probs=43.8

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l   83 (149)
                      +|+++||+||||++.      ++   .+.+.+.++|++|+++|++++++|||+... +...+
T Consensus         4 ~kli~~DlDGTLl~~------~~---~i~~~~~~~l~~l~~~g~~~~iaTGR~~~~-~~~~l   55 (246)
T 3f9r_A            4 RVLLLFDVDGTLTPP------RL---CQTDEMRALIKRARGAGFCVGTVGGSDFAK-QVEQL   55 (246)
T ss_dssp             SEEEEECSBTTTBST------TS---CCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHH
T ss_pred             ceEEEEeCcCCcCCC------CC---ccCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHh
Confidence            789999999999983      32   477899999999999999999999999776 34433

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=98.86  E-value=1.7e-10  Score=89.64  Aligned_cols=88  Identities=13%  Similarity=0.108  Sum_probs=64.0

Q ss_pred             cHHHHHHHHHHCCceEEEEeCCCchHHH--H--HHHHHcCCCCCcccc------cccCCChhHHHHHH--h----hCCCc
Q 032013           52 HAKGILEALKEKGIHVAVASRSPAPDIA--K--TFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--F----FFSIS  115 (149)
Q Consensus        52 g~~e~L~~Lk~~Gi~i~IaT~~~~~~i~--~--~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~----~~~~~  115 (149)
                      ...++++.|+++|++ +|+||++... .  .  ..++..++..+|+.+      ...||+|..+..+.  .    +++|+
T Consensus       149 ~~~~l~~~L~~~g~~-~i~tn~~~~~-~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~~  226 (284)
T 2hx1_A          149 DLNKTVNLLRKRTIP-AIVANTDNTY-PLTKTDVAIAIGGVATMIESILGRRFIRFGKPDSQMFMFAYDMLRQKMEISKR  226 (284)
T ss_dssp             HHHHHHHHHHHCCCC-EEEECCCSEE-ECSSSCEEECHHHHHHHHHHHHCSCEEEESTTSSHHHHHHHHHHHTTSCCCGG
T ss_pred             cHHHHHHHHhcCCCe-EEEECCCccc-cCcCCCccccCChHHHHHHHHhCCceeEecCCCHHHHHHHHHHHhhccCCCcc
Confidence            556777889999999 9999997654 3  2  112344555555543      24588884444433  5    77889


Q ss_pred             ceEEEeehH-hHHHHHHHhCCchhhhh
Q 032013          116 AFILFVDLF-CFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       116 ~~l~~eDs~-~gi~aa~~ag~~~~~~~  141 (149)
                      +|+.+.|++ ++|.+|++|||+++.+.
T Consensus       227 ~~~~VGD~~~~Di~~A~~aG~~~i~v~  253 (284)
T 2hx1_A          227 EILMVGDTLHTDILGGNKFGLDTALVL  253 (284)
T ss_dssp             GEEEEESCTTTHHHHHHHHTCEEEEES
T ss_pred             eEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence            999999995 99999999999998764

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=98.86  E-value=4.5e-09  Score=81.52  Aligned_cols=61  Identities=20%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeC---CCchHHHHHHHHHcCCC-CCc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIH-SMF   92 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~---~~~~~i~~~~l~~~gl~-~~f   92 (149)
                      ++++++||+||||+++          ..+.|++.++|++++++|++++++||   ++... ....++.+|+. ..+
T Consensus        13 ~~k~i~~D~DGtL~~~----------~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~-~~~~l~~lg~~~~~~   77 (284)
T 2hx1_A           13 KYKCIFFDAFGVLKTY----------NGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQ-LADSYHKLGLFSITA   77 (284)
T ss_dssp             GCSEEEECSBTTTEET----------TEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHH-HHHHHHHTTCTTCCG
T ss_pred             cCCEEEEcCcCCcCcC----------CeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHH-HHHHHHHCCcCCCCH
Confidence            4899999999999983          13678999999999999999999998   45556 57888889987 444

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=98.82  E-value=2.8e-09  Score=81.55  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=46.0

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~   86 (149)
                      ++++++|+||||++...    ......+.+.+.++|++|+++| +++++|||+... +...++.+
T Consensus         1 ikli~~DlDGTLl~~~~----~~~~~~i~~~~~~al~~l~~~g-~v~iaTGR~~~~-~~~~~~~l   59 (239)
T 1u02_A            1 MSLIFLDYDGTLVPIIM----NPEESYADAGLLSLISDLKERF-DTYIVTGRSPEE-ISRFLPLD   59 (239)
T ss_dssp             -CEEEEECBTTTBCCCS----CGGGCCCCHHHHHHHHHHHHHS-EEEEECSSCHHH-HHHHSCSS
T ss_pred             CeEEEEecCCCCcCCCC----CcccCCCCHHHHHHHHHHhcCC-CEEEEeCCCHHH-HHHHhccc
Confidence            47899999999998311    1111257789999999999999 999999999888 57776654

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=98.81  E-value=1.3e-08  Score=82.91  Aligned_cols=102  Identities=18%  Similarity=0.105  Sum_probs=67.8

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---hHHHHHHHH-HcCCCCCcccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLH-KLGIHSMFVPM   95 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---~~i~~~~l~-~~gl~~~f~~~   95 (149)
                      .+.++++||+||||+++          ..+.||+.++|++|+++|++++++||++.   .. ....+. .+|+.  +...
T Consensus        11 ~~~~~~l~D~DGvl~~g----------~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~-~~~~l~~~lgi~--~~~~   77 (352)
T 3kc2_A           11 SKKIAFAFDIDGVLFRG----------KKPIAGASDALKLLNRNKIPYILLTNGGGFSERA-RTEFISSKLDVD--VSPL   77 (352)
T ss_dssp             -CCEEEEECCBTTTEET----------TEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHH-HHHHHHHHHTSC--CCGG
T ss_pred             ccCCEEEEECCCeeEcC----------CeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchH-HHHHHHHhcCCC--CChh
Confidence            34789999999999984          14789999999999999999999998863   34 344554 68885  3444


Q ss_pred             cccCC-ChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           96 VRLSC-CIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        96 ~~~~p-~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      ++..+ .++.. |+.    ....+.+-=+..-......+|.+.++
T Consensus        78 ~i~ts~~~~~~-~~~----~~~~v~viG~~~l~~~l~~~G~~~v~  117 (352)
T 3kc2_A           78 QIIQSHTPYKS-LVN----KYSRILAVGTPSVRGVAEGYGFQDVV  117 (352)
T ss_dssp             GEECTTGGGGG-GTT----TCSEEEEESSTTHHHHHHHHTCSEEE
T ss_pred             hEeehHHHHHH-HHh----cCCEEEEECCHHHHHHHHhCCCeEec
Confidence            44433 44322 322    22333333344445566777988774

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=98.78  E-value=8.5e-09  Score=79.13  Aligned_cols=56  Identities=27%  Similarity=0.327  Sum_probs=45.7

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccc
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~   94 (149)
                      +|+||+||||++.      .    .+.+.+.++|++++++|++++++||++... +.    .+++..++..
T Consensus         2 li~~DlDGTLl~~------~----~i~~~~~~al~~l~~~Gi~v~iaTGR~~~~-~~----~l~~~~~~i~   57 (259)
T 3zx4_A            2 IVFTDLDGTLLDE------R----GELGPAREALERLRALGVPVVPVTAKTRKE-VE----ALGLEPPFIV   57 (259)
T ss_dssp             EEEECCCCCCSCS------S----SSCSTTHHHHHHHHHTTCCEEEBCSSCHHH-HH----HTTCCSSEEE
T ss_pred             EEEEeCCCCCcCC------C----cCCHHHHHHHHHHHHCCCeEEEEeCCCHHH-HH----HcCCCCcEEE
Confidence            6899999999983      2    366888999999999999999999999877 44    6776555433

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=98.75  E-value=2.5e-09  Score=82.09  Aligned_cols=55  Identities=29%  Similarity=0.400  Sum_probs=45.0

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      |+++||+||||++.      ++  ..+.+.+.++|++++++|++++++|||+ .. +...++.++
T Consensus         3 kli~~DlDGTLl~~------~~--~~i~~~~~~al~~l~~~G~~~~iaTGR~-~~-~~~~~~~l~   57 (261)
T 2rbk_A            3 KALFFDIDGTLVSF------ET--HRIPSSTIEALEAAHAKGLKIFIATGRP-KA-IINNLSELQ   57 (261)
T ss_dssp             CEEEECSBTTTBCT------TT--SSCCHHHHHHHHHHHHTTCEEEEECSSC-GG-GCCSCHHHH
T ss_pred             cEEEEeCCCCCcCC------CC--CcCCHHHHHHHHHHHHCCCEEEEECCCh-HH-HHHHHHHhC
Confidence            78999999999983      22  1267889999999999999999999999 77 565555555

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=98.73  E-value=6.3e-09  Score=80.38  Aligned_cols=53  Identities=25%  Similarity=0.330  Sum_probs=43.3

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~   84 (149)
                      .++++++|+||||++      +++   .+.+.+.++|++|+++ ++++++|||+... +...+.
T Consensus        12 ~~kli~~DlDGTLl~------~~~---~is~~~~~al~~l~~~-i~v~iaTGR~~~~-~~~~l~   64 (262)
T 2fue_A           12 ERVLCLFDVDGTLTP------ARQ---KIDPEVAAFLQKLRSR-VQIGVVGGSDYCK-IAEQLG   64 (262)
T ss_dssp             -CEEEEEESBTTTBS------TTS---CCCHHHHHHHHHHTTT-SEEEEECSSCHHH-HHHHHS
T ss_pred             CeEEEEEeCccCCCC------CCC---cCCHHHHHHHHHHHhC-CEEEEEcCCCHHH-HHHHHh
Confidence            479999999999998      232   4678999999999999 9999999998776 455443

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=98.72  E-value=1.7e-08  Score=77.03  Aligned_cols=47  Identities=28%  Similarity=0.362  Sum_probs=40.4

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~   77 (149)
                      .+|++++|+||||++      +++   .+.+.+.++|++|+++ ++++++|||+...
T Consensus         5 ~~kli~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~-i~v~iaTGR~~~~   51 (246)
T 2amy_A            5 GPALCLFDVDGTLTA------PRQ---KITKEMDDFLQKLRQK-IKIGVVGGSDFEK   51 (246)
T ss_dssp             CSEEEEEESBTTTBC------TTS---CCCHHHHHHHHHHTTT-SEEEEECSSCHHH
T ss_pred             CceEEEEECCCCcCC------CCc---ccCHHHHHHHHHHHhC-CeEEEEcCCCHHH
Confidence            378999999999998      232   4678999999999999 9999999998655

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=98.64  E-value=2.4e-08  Score=82.03  Aligned_cols=100  Identities=12%  Similarity=-0.009  Sum_probs=71.6

Q ss_pred             ccEEEEecCCcccccccc-----c-----cc---------------------cCCCCccCccHHHHHHHHHHCCceEEEE
Q 032013           22 PRLVVFDLDYTLWPFYCE-----C-----CY---------------------EDEIPYLYPHAKGILEALKEKGIHVAVA   70 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~-----~-----~~---------------------~~~~~~~~pg~~e~L~~Lk~~Gi~i~Ia   70 (149)
                      .++++|||||||+++...     |     ++                     ..-.+...||+.++|+++. +++.++|.
T Consensus        18 k~~LVlDLD~TLvhS~~~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~-~~yeivI~   96 (372)
T 3ef0_A           18 RLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKIS-ELYELHIY   96 (372)
T ss_dssp             CEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHH-TTEEEEEE
T ss_pred             CCEEEEcCCCCcccccCcCccchhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHh-cCcEEEEE
Confidence            578999999999997211     0     00                     0112556899999999999 67999999


Q ss_pred             eCCCchHHHHHHHHHcCCCC-CcccccccC-CChhHHHHHH----h-hCCCcceEEEeehHh
Q 032013           71 SRSPAPDIAKTFLHKLGIHS-MFVPMVRLS-CCIMCIIFFL----F-FFSISAFILFVDLFC  125 (149)
Q Consensus        71 T~~~~~~i~~~~l~~~gl~~-~f~~~~~~~-p~p~~~i~~~----~-~~~~~~~l~~eDs~~  125 (149)
                      |++.... +..+++.++... +|...-... ..+  .+|.+    + +.+++.+++++|++.
T Consensus        97 Tas~~~y-A~~vl~~LDp~~~~f~~ri~sr~~~g--~~~~KdL~~L~~~dl~~viiiDd~~~  155 (372)
T 3ef0_A           97 TMGTKAY-AKEVAKIIDPTGKLFQDRVLSRDDSG--SLAQKSLRRLFPCDTSMVVVIDDRGD  155 (372)
T ss_dssp             CSSCHHH-HHHHHHHHCTTSCSSSSCEECTTTSS--CSSCCCGGGTCSSCCTTEEEEESCSG
T ss_pred             eCCcHHH-HHHHHHHhccCCceeeeEEEEecCCC--CcceecHHHhcCCCCceEEEEeCCHH
Confidence            9999998 899999999877 676321111 111  23433    2 456799999999974

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=98.55  E-value=3.1e-08  Score=75.80  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=44.3

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      .++++|+||||++.      +.    ..+.+.++|++++ +|++++++|||+... +..+++.+++.
T Consensus         4 ~li~~DlDGTLl~~------~~----~~~~~~~~l~~~~-~gi~v~iaTGR~~~~-~~~~~~~l~l~   58 (244)
T 1s2o_A            4 LLLISDLDNTWVGD------QQ----ALEHLQEYLGDRR-GNFYLAYATGRSYHS-ARELQKQVGLM   58 (244)
T ss_dssp             EEEEECTBTTTBSC------HH----HHHHHHHHHHTTG-GGEEEEEECSSCHHH-HHHHHHHHTCC
T ss_pred             eEEEEeCCCCCcCC------HH----HHHHHHHHHHHhc-CCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            48999999999983      21    2256778888866 589999999999998 68899988774

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.33  E-value=9.7e-08  Score=76.95  Aligned_cols=115  Identities=18%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc-----
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM-----   95 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~-----   95 (149)
                      ..+++++|+||||++...  ......+...||+.++|+++.+ .|.++|.|++.... +..+++.++....+...     
T Consensus       139 ~k~tLVLDLDeTLvh~~~--~~~~~~~~~RP~l~eFL~~l~~-~yeivIfTas~~~y-a~~vld~Ld~~~~~~~~~~~~r  214 (320)
T 3shq_A          139 GKKLLVLDIDYTLFDHRS--PAETGTELMRPYLHEFLTSAYE-DYDIVIWSATSMRW-IEEKMRLLGVASNDNYKVMFYL  214 (320)
T ss_dssp             TCEEEEECCBTTTBCSSS--CCSSHHHHBCTTHHHHHHHHHH-HEEEEEECSSCHHH-HHHHHHHTTCTTCSSCCCCEEE
T ss_pred             CCcEEEEeccccEEcccc--cCCCcceEeCCCHHHHHHHHHh-CCEEEEEcCCcHHH-HHHHHHHhCCCCCcceeEEEEE
Confidence            357899999999998521  1112235688999999999995 59999999999999 89999998865542110     


Q ss_pred             -cc--cC--CChhHHHHHH----h-----hCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           96 -VR--LS--CCIMCIIFFL----F-----FFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        96 -~~--~~--p~p~~~i~~~----~-----~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                       ..  ..  ....+..|.+    +     +.+++++++++||+......-..|+++.=
T Consensus       215 ~~~~~~~~~~~~~g~~~vKdLs~Lw~~~p~rdl~~tIiIDdsp~~~~~~p~NgI~I~~  272 (320)
T 3shq_A          215 DSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSNTIMFDDIRRNFLMNPKSGLKIRP  272 (320)
T ss_dssp             CGGGCEEEEETTTEEEEECCHHHHHHHCTTCCGGGEEEEESCGGGGTTSGGGEEECCC
T ss_pred             cCCccccccccCCCCEEEEEhHHhhcccCCCChhHEEEEeCChHHhccCcCceEEeCe
Confidence             10  00  0000112222    2     56779999999999877666566655443

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=98.10  E-value=3.8e-06  Score=65.73  Aligned_cols=44  Identities=16%  Similarity=0.168  Sum_probs=40.0

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      ..++.||+.++++.|+++|+++.++|+..... ++.+++++|+..
T Consensus       139 ~i~l~~g~~e~i~~l~~~gi~v~ivSgg~~~~-i~~i~~~~g~~~  182 (297)
T 4fe3_A          139 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDV-LEEVIRQAGVYH  182 (297)
T ss_dssp             CCCBCBTHHHHHHHHHHTTCCEEEEEEEEHHH-HHHHHHHTTCCC
T ss_pred             CCCCCCcHHHHHHHHHHcCCeEEEEeCCcHHH-HHHHHHHcCCCc
Confidence            46899999999999999999999999998887 799999999754

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=97.83  E-value=1.4e-05  Score=64.46  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~   86 (149)
                      .++|++.+++++|+++|+.+.|+|+++... ++.+.+..
T Consensus       143 ~~~~~~~~l~~~l~~~G~~v~ivSas~~~~-v~~~a~~~  180 (327)
T 4as2_A          143 RVFSGQRELYNKLMENGIEVYVISAAHEEL-VRMVAADP  180 (327)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHTCG
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHhhc
Confidence            589999999999999999999999999887 68888764

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=97.70  E-value=9.9e-05  Score=64.25  Aligned_cols=102  Identities=14%  Similarity=0.001  Sum_probs=79.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      .+.+.+..|+++...-.      -..++.|++.+.+++|+++|+++.++||.+... ++.+.+++|+..+|..   ..|.
T Consensus       437 ~~~l~va~~~~~~G~i~------~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~-a~~ia~~lgi~~~~~~---~~P~  506 (645)
T 3j08_A          437 KTAVIVARNGRVEGIIA------VSDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVIAE---VLPH  506 (645)
T ss_dssp             CCCEEEEETTEEEEEEE------EECCCTTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEECS---CCTT
T ss_pred             CeEEEEEECCEEEEEEE------ecCCchhHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCEEEEe---CCHH
Confidence            46688888999875211      112588999999999999999999999999998 8999999999765543   2455


Q ss_pred             hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013          102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag  134 (149)
                      ....+--..+-. ++++.+=|..|++.+.++||
T Consensus       507 ~K~~~v~~l~~~-~~v~~vGDg~ND~~al~~A~  538 (645)
T 3j08_A          507 QKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD  538 (645)
T ss_dssp             CHHHHHHHHTTT-CCEEEEECSSSCHHHHHHSS
T ss_pred             hHHHHHHHHhhC-CeEEEEeCCHhHHHHHHhCC
Confidence            544444444444 77888899999999999997

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=97.48  E-value=0.00019  Score=54.54  Aligned_cols=90  Identities=11%  Similarity=0.007  Sum_probs=58.6

Q ss_pred             cCccHHHHHHHHHHCCceEEEEeCCCc------hHHHH-HHHHHcCC-------------CCCccc--------------
Q 032013           49 LYPHAKGILEALKEKGIHVAVASRSPA------PDIAK-TFLHKLGI-------------HSMFVP--------------   94 (149)
Q Consensus        49 ~~pg~~e~L~~Lk~~Gi~i~IaT~~~~------~~i~~-~~l~~~gl-------------~~~f~~--------------   94 (149)
                      ..+.+.++++.+++.|+++.+.|+...      .. .. ..++.+++             ..++..              
T Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  164 (261)
T 2rbk_A           86 PQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEM-VKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLP  164 (261)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECSSCEEEESCCHH-HHHHTTTTTCCCCCCBCCHHHHHTSCCSEEEECCCHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHcCCeEEEEeCCcEEEeCccHH-HHHHHHHhhcccCCCccccchhccCceeEEEEEeCHHHHHHHHH
Confidence            347788999999999999999886653      22 12 22222221             111110              


Q ss_pred             -----------------ccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           95 -----------------MVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        95 -----------------~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                                       ....+|+|.+..++.  .++++++|++|.||.|++.++++||+.+.+
T Consensus       165 ~~~~~~~~~s~~~~~ei~~~~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~~v~~  228 (261)
T 2rbk_A          165 SIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAM  228 (261)
T ss_dssp             GSTTCEEECSSTTCCEEESTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEC
T ss_pred             hcCCeEEEEecCCeEEecCCCCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCceEEe
Confidence                             112245555555554  567789999999999999999999986654

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=97.42  E-value=7.4e-06  Score=65.12  Aligned_cols=40  Identities=8%  Similarity=-0.222  Sum_probs=28.4

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~   75 (149)
                      ++++|+||+||||++.      +.        . +.+.+++++|+.++++||++.
T Consensus        20 ~~kli~fDlDGTLld~------~~--------~-~~l~~~~~~g~~~~~~tGR~~   59 (332)
T 1y8a_A           20 QGHMFFTDWEGPWILT------DF--------A-LELCMAVFNNARFFSNLSEYD   59 (332)
T ss_dssp             CCCEEEECSBTTTBCC------CH--------H-HHHHHHHHCCHHHHHHHHHHH
T ss_pred             CceEEEEECcCCCcCc------cH--------H-HHHHHHHHCCCEEEEEcCCCc
Confidence            4789999999999983      11        1 566666677767777776654

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=97.35  E-value=0.00067  Score=59.73  Aligned_cols=103  Identities=14%  Similarity=-0.003  Sum_probs=78.9

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p  100 (149)
                      ..+.+.+..||+++..-..  .    .++.|++.+.+++|+++|+++.++||.+... +..+.+++|+..++..   ..|
T Consensus       514 g~~~~~va~~~~~~G~i~i--~----D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~~-a~~ia~~lgi~~~~~~---~~P  583 (723)
T 3j09_A          514 AKTAVIVARNGRVEGIIAV--S----DTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVIAE---VLP  583 (723)
T ss_dssp             TCEEEEEEETTEEEEEEEE--E----CCSCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEECS---CCT
T ss_pred             CCeEEEEEECCEEEEEEee--c----CCcchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCcEEEcc---CCH
Confidence            3567888999998752110  1    2588999999999999999999999999998 8999999999765432   245


Q ss_pred             ChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013          101 CIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       101 ~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag  134 (149)
                      .....+--..+-. +.++.+=|..|++.+.++||
T Consensus       584 ~~K~~~v~~l~~~-~~v~~vGDg~ND~~al~~A~  616 (723)
T 3j09_A          584 HQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD  616 (723)
T ss_dssp             TCHHHHHHHHTTT-CCEEEEECSSTTHHHHHHSS
T ss_pred             HHHHHHHHHHhcC-CeEEEEECChhhHHHHhhCC
Confidence            5544444344433 77888889999999999997

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=97.34  E-value=0.00026  Score=60.67  Aligned_cols=95  Identities=13%  Similarity=0.008  Sum_probs=72.0

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc-C-------------CCCCccccc--ccCCChhH------
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G-------------IHSMFVPMV--RLSCCIMC------  104 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~-g-------------l~~~f~~~~--~~~p~p~~------  104 (149)
                      +..-|++..+|++|++.| ++.++||++... +...++.+ |             +.++|+.+.  ..||....      
T Consensus       245 v~kdp~l~~~L~~Lr~~G-KlfLiTNS~~~y-v~~~m~yllg~~~~~~~~~~~~dWrdlFD~vI~~A~KP~FF~~~~pfr  322 (555)
T 2jc9_A          245 VVKDGKLPLLLSRMKEVG-KVFLATNSDYKY-TDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTVLR  322 (555)
T ss_dssp             BCCCTHHHHHHHHHHHHS-EEEEECSSCHHH-HHHHHHHHTCSSSSSSTTSCCCCGGGGCSEEEESCCTTGGGTTCCCEE
T ss_pred             cCCChHHHHHHHHHHHcC-CEEEEeCCChHH-HHHHHHHhcCCCccccccccccchhhhCCEEEEeCCCCCcccCCCcce
Confidence            345578889999999999 999999999998 78888887 6             456788742  33555322      


Q ss_pred             -----------------------------HHHHH-hhCCCcceEEEeehHhH-HHHHH-HhCCchhhhhhh
Q 032013          105 -----------------------------IIFFL-FFFSISAFILFVDLFCF-MYAAA-YVGCDLYVYKRL  143 (149)
Q Consensus       105 -----------------------------~i~~~-~~~~~~~~l~~eDs~~g-i~aa~-~ag~~~~~~~~~  143 (149)
                                                   ..+.+ .+...++.+.|=|...| |..++ .+|.+|+.+...
T Consensus       323 ~Vd~~tg~l~~~~~~~~l~~g~vY~gGn~~~~~~llg~~g~eVLYVGDhIftDIl~~kk~~GWrTiLViPE  393 (555)
T 2jc9_A          323 QVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPE  393 (555)
T ss_dssp             EEETTTTEECSSCCCSCCCTTCCEEECCHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHHHCCEEEEECTT
T ss_pred             EeecCCCccccccccccccCCceeccCCHHHHHHHhCCCCCeEEEECCEehHhHHhHHhhcCeEEEEEEec
Confidence                                         22222 56777899999998766 88886 899999987764

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=97.31  E-value=0.00039  Score=61.47  Aligned_cols=103  Identities=12%  Similarity=-0.000  Sum_probs=76.1

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      .+.+++..||+++..-..  .    -++.|++.+.+++|+++|+++.++||.+... +..+.+++|+.+++..   ..|.
T Consensus       534 ~~vl~va~d~~~~G~i~i--~----D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~-a~~ia~~lgi~~v~a~---~~P~  603 (736)
T 3rfu_A          534 ASVMFMAVDGKTVALLVV--E----DPIKSSTPETILELQQSGIEIVMLTGDSKRT-AEAVAGTLGIKKVVAE---IMPE  603 (736)
T ss_dssp             CEEEEEEETTEEEEEEEE--E----CCBCSSHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHHHHTCCCEECS---CCHH
T ss_pred             CeEEEEEECCEEEEEEEe--e----ccchhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCEEEEe---cCHH
Confidence            577899999998752110  1    2588999999999999999999999999998 8999999999765432   2333


Q ss_pred             hhHHHHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013          102 IMCIIFFLFFFSISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       102 p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag  134 (149)
                      ....+--..+-..+..+.+=|..|+..+-++||
T Consensus       604 ~K~~~v~~l~~~g~~V~~vGDG~ND~paL~~Ad  636 (736)
T 3rfu_A          604 DKSRIVSELKDKGLIVAMAGDGVNDAPALAKAD  636 (736)
T ss_dssp             HHHHHHHHHHHHSCCEEEEECSSTTHHHHHHSS
T ss_pred             HHHHHHHHHHhcCCEEEEEECChHhHHHHHhCC
Confidence            322222223333456777789999999999886

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=97.12  E-value=0.00034  Score=55.39  Aligned_cols=90  Identities=12%  Similarity=0.013  Sum_probs=61.3

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc-----------------------cccCCC---
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM-----------------------VRLSCC---  101 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~-----------------------~~~~p~---  101 (149)
                      .+.+++.++++.|++ |++++++|+..... +....+.+++.+.+...                       ....+.   
T Consensus       103 ~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  180 (332)
T 1y8a_A          103 KFVPDAEKAMATLQE-RWTPVVISTSYTQY-LRRTASMIGVRGELHGTEVDFDSIAVPEGLREELLSIIDVIASLSGEEL  180 (332)
T ss_dssp             CBCTTHHHHHHHHHT-TCEEEEEEEEEHHH-HHHHHHHTTCCSEEEEEBCCGGGCCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_pred             CCHHHHHHHHHHHHc-CCcEEEEECCceEE-EcccchhhhhhhhhcccccchhhhccccccceeEEecCHHHHhhhhHHH
Confidence            578999999999999 99999999887555 56666667763332110                       000111   


Q ss_pred             ----------hhHHHHH----------H----hhCCCcc----eEEEeehHhHHHHHHHh----CCchhh
Q 032013          102 ----------IMCIIFF----------L----FFFSISA----FILFVDLFCFMYAAAYV----GCDLYV  139 (149)
Q Consensus       102 ----------p~~~i~~----------~----~~~~~~~----~l~~eDs~~gi~aa~~a----g~~~~~  139 (149)
                                ..+..|.          +    .++++++    |++|.|+.|++.++++|    |+.+.+
T Consensus       181 l~~~~~~~~~s~~~~~~e~ii~~~g~~K~~al~gi~~~~~~~~via~GDs~NDi~ml~~A~~~~g~~vam  250 (332)
T 1y8a_A          181 FRKLDELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDFPVVVGDSISDYKMFEAARGLGGVAIAF  250 (332)
T ss_dssp             HHHHHHHHHSHHHHHHHHTCBCCCHHHHHHHHHHHHHHHTCSSCEEEECSGGGHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHhhcCCCceeeEEecCCCCCHHHHHhccChhhcCceEEEEeCcHhHHHHHHHHhhcCCeEEEe
Confidence                      0011222          1    3566788    99999999999999999    986554

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=96.80  E-value=0.0072  Score=54.89  Aligned_cols=87  Identities=13%  Similarity=-0.008  Sum_probs=65.0

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----------------------------cccC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----------------------------VRLS   99 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----------------------------~~~~   99 (149)
                      ++.|++.++++.|++.|+++.++||..... +..+.+++|+.......                            ....
T Consensus       603 ~lr~~~~~~I~~l~~~Gi~v~miTGD~~~t-a~~ia~~lgi~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~v~~r~~  681 (995)
T 3ar4_A          603 PPRKEVMGSIQLCRDAGIRVIMITGDNKGT-AIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVE  681 (995)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHTSSCTTCCCTTTEEEHHHHHTSCHHHHHHHHHHCCEEESCC
T ss_pred             CCchhHHHHHHHHHHcCCEEEEECCCCHHH-HHHHHHHcCcCCCCCcccceEEEchhhhhCCHHHHHHHHhhCcEEEEeC
Confidence            588999999999999999999999999988 89999999996532110                            0112


Q ss_pred             CChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013          100 CCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus       100 p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      |.....+--..+-.-+.++.+-|..|++.|-++|++
T Consensus       682 P~~K~~~v~~l~~~g~~v~~~GDG~ND~~alk~Adv  717 (995)
T 3ar4_A          682 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEI  717 (995)
T ss_dssp             SSHHHHHHHHHHTTTCCEEEEECSGGGHHHHHHSTE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHCCe
Confidence            443333333333333678899999999999999974

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=96.74  E-value=0.0023  Score=53.54  Aligned_cols=102  Identities=12%  Similarity=-0.028  Sum_probs=68.4

Q ss_pred             CccEEEEecCCccccccccc----------cc---------------------cCCCCccCccHHHHHHHHHHCCceEEE
Q 032013           21 LPRLVVFDLDYTLWPFYCEC----------CY---------------------EDEIPYLYPHAKGILEALKEKGIHVAV   69 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~----------~~---------------------~~~~~~~~pg~~e~L~~Lk~~Gi~i~I   69 (149)
                      ....+++|+|.||+......          ++                     ..-.+...||+.++|+++. +.|.++|
T Consensus        25 ~Kl~LVLDLDeTLiHs~~~~~~~~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~~V~~RPgl~eFL~~ls-~~yEivI  103 (442)
T 3ef1_A           25 KRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKIS-ELYELHI  103 (442)
T ss_dssp             TCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHT-TTEEEEE
T ss_pred             CCeEEEEeeccceeccccccccchhccCCCCcchhhhccccceeeeeccCCceeEEEEEeCCCHHHHHHHHh-CCcEEEE
Confidence            35679999999999863210          00                     0112566899999999998 5699999


Q ss_pred             EeCCCchHHHHHHHHHcCCCC-CcccccccCCChhHHHHHH-----hhCCCcceEEEeehHh
Q 032013           70 ASRSPAPDIAKTFLHKLGIHS-MFVPMVRLSCCIMCIIFFL-----FFFSISAFILFVDLFC  125 (149)
Q Consensus        70 aT~~~~~~i~~~~l~~~gl~~-~f~~~~~~~p~p~~~i~~~-----~~~~~~~~l~~eDs~~  125 (149)
                      .|++.... +..+++.++... +|...-....+- +..|.+     .+.+.+..++++|++.
T Consensus       104 fTas~~~Y-A~~Vl~~LDp~~~~f~~Rl~sRd~c-g~~~~KdL~~ll~rdl~~vvIIDd~p~  163 (442)
T 3ef1_A          104 YTMGTKAY-AKEVAKIIDPTGKLFQDRVLSRDDS-GSLAQKSLRRLFPCDTSMVVVIDDRGD  163 (442)
T ss_dssp             ECSSCHHH-HHHHHHHHCTTSTTTTTCEECTTTS-SCSSCCCGGGTCSSCCTTEEEEESCSG
T ss_pred             EcCCCHHH-HHHHHHHhccCCccccceEEEecCC-CCceeeehHHhcCCCcceEEEEECCHH
Confidence            99999998 899999998776 565421111111 011222     1345578888888873

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=96.74  E-value=0.00089  Score=51.21  Aligned_cols=77  Identities=9%  Similarity=0.003  Sum_probs=50.5

Q ss_pred             HHHCCceEEEEeCCCchHHHHHHHHHcC--CCCCcccc----------cccCCChhHHHHHH--hhCCCcceEEEeehHh
Q 032013           60 LKEKGIHVAVASRSPAPDIAKTFLHKLG--IHSMFVPM----------VRLSCCIMCIIFFL--FFFSISAFILFVDLFC  125 (149)
Q Consensus        60 Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g--l~~~f~~~----------~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~  125 (149)
                      +++.+++++++|+...   ....++.++  +..+|...          ....+++.+.-++.  .++++++|++|.||.|
T Consensus       142 ~~~~~~ki~i~~~~~~---~~~~~~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~~~~l~~~l~i~~~~~~~~GD~~n  218 (271)
T 1rlm_A          142 IDDVLFKFSLNLPDEQ---IPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN  218 (271)
T ss_dssp             CCSCEEEEEEECCGGG---HHHHHHHHHHHTTTSSEEEECSTTEEEEECTTCSHHHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred             CCCceEEEEEEcCHHH---HHHHHHHHHHHcCCcEEEEeccCCeEEEEcCCCChHHHHHHHHHHhCCCHHHEEEECCcHH
Confidence            3456788998887643   233343332  33323221          23356666655555  5677899999999999


Q ss_pred             HHHHHHHhCCchhh
Q 032013          126 FMYAAAYVGCDLYV  139 (149)
Q Consensus       126 gi~aa~~ag~~~~~  139 (149)
                      ++..++.||+.+.+
T Consensus       219 D~~m~~~ag~~va~  232 (271)
T 1rlm_A          219 DAEMLKMARYSFAM  232 (271)
T ss_dssp             GHHHHHHCSEEEEC
T ss_pred             HHHHHHHcCCeEEe
Confidence            99999999987654

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=96.58  E-value=0.0066  Score=45.64  Aligned_cols=30  Identities=13%  Similarity=0.100  Sum_probs=26.8

Q ss_pred             hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          110 FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       110 ~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .++++++|++|.||.|++..+++||+.+.+
T Consensus       195 lgi~~~~~ia~GDs~NDi~ml~~ag~~vam  224 (258)
T 2pq0_A          195 LGIDKKDVYAFGDGLNDIEMLSFVGTGVAM  224 (258)
T ss_dssp             HTCCGGGEEEECCSGGGHHHHHHSSEEEEE
T ss_pred             hCCCHHHEEEECCcHHhHHHHHhCCcEEEe
Confidence            667889999999999999999999987654

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=96.26  E-value=0.0026  Score=52.08  Aligned_cols=43  Identities=16%  Similarity=0.116  Sum_probs=39.0

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ..+++|++.+++++|+++|+++.|+|++.... ++.+.+.+|+.
T Consensus       219 gir~~p~~~eLi~~L~~~G~~v~IVSgg~~~~-v~~ia~~lg~~  261 (385)
T 4gxt_A          219 GIRTLDEMVDLYRSLEENGIDCYIVSASFIDI-VRAFATDTNNN  261 (385)
T ss_dssp             CCEECHHHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHCTTSS
T ss_pred             CceeCHHHHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHhCcc
Confidence            36799999999999999999999999999888 79999998763

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=96.02  E-value=0.0012  Score=50.59  Aligned_cols=16  Identities=19%  Similarity=0.343  Sum_probs=14.5

Q ss_pred             CccEEEEecCCccccc
Q 032013           21 LPRLVVFDLDYTLWPF   36 (149)
Q Consensus        21 ~~k~vifDlDGTLld~   36 (149)
                      ++++|+||+||||+|.
T Consensus         9 ~ikaviFDlDGTL~ds   24 (261)
T 1yns_A            9 EVTVILLDIEGTTTPI   24 (261)
T ss_dssp             TCCEEEECCBTTTBCH
T ss_pred             CCCEEEEecCCCccch
Confidence            4899999999999984

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=95.58  E-value=0.0081  Score=48.57  Aligned_cols=30  Identities=17%  Similarity=0.099  Sum_probs=26.4

Q ss_pred             CCcceEEEeehH-hHHHHHHHhCCchhhhhh
Q 032013          113 SISAFILFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       113 ~~~~~l~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      ++++|+++.|++ .+|++|++|||+++.+..
T Consensus       289 ~~~~~~~VGD~~~~Di~~A~~aG~~ti~V~~  319 (352)
T 3kc2_A          289 PFHAVFMVGDNPASDIIGAQNYGWNSCLVKT  319 (352)
T ss_dssp             TSSEEEEEESCTTTHHHHHHHHTCEEEECSS
T ss_pred             CcceEEEEecCcHHHHHHHHHcCCEEEEEcc
Confidence            568999999999 599999999999987653

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=95.03  E-value=0.0091  Score=46.04  Aligned_cols=17  Identities=29%  Similarity=0.020  Sum_probs=15.0

Q ss_pred             ccEEEEecCCccccccc
Q 032013           22 PRLVVFDLDYTLWPFYC   38 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~   38 (149)
                      +++|+||+||||+++..
T Consensus        32 i~~viFD~dGTL~ds~~   48 (287)
T 3a1c_A           32 VTAVIFDKTGTLTKGKP   48 (287)
T ss_dssp             CCEEEEECCCCCBCSCC
T ss_pred             CCEEEEeCCCCCcCCCE
Confidence            78999999999999644

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=94.67  E-value=0.1  Score=39.79  Aligned_cols=40  Identities=13%  Similarity=0.076  Sum_probs=31.1

Q ss_pred             CChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          100 CCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       100 p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++.+.-++.  .+++++++++|-|+.|++..+++||+-+.+
T Consensus       211 ~K~~~l~~l~~~lgi~~~e~ia~GD~~NDi~ml~~ag~~vam  252 (283)
T 3dao_A          211 SKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAV  252 (283)
T ss_dssp             CHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEEE
T ss_pred             cHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCEEEc
Confidence            3444455554  667779999999999999999999976544

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=94.38  E-value=0.16  Score=46.27  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=38.5

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.+++++|+++|+++.++||++... +..+.+++|+.
T Consensus       604 p~r~~~~~aI~~l~~aGI~vvmiTGd~~~t-A~~ia~~lgi~  644 (1034)
T 3ixz_A          604 PPRATVPDAVLKCRTAGIRVIMVTGDHPIT-AKAIAASVGII  644 (1034)
T ss_pred             CCchhHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999998 89999999984

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=94.11  E-value=0.09  Score=40.49  Aligned_cols=39  Identities=10%  Similarity=-0.039  Sum_probs=30.4

Q ss_pred             ChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          101 CIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       101 ~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      ++.+.-++.  .+++++++++|.||.|++..+++||+.+.+
T Consensus       229 K~~al~~l~~~lgi~~~e~i~~GDs~NDi~m~~~ag~~vam  269 (304)
T 3l7y_A          229 KGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAM  269 (304)
T ss_dssp             HHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHCTEEEEC
T ss_pred             HHHHHHHHHHHhCcCHHHEEEECCCHHHHHHHHhcCCeEEc
Confidence            343455554  567789999999999999999999976544

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=93.51  E-value=0.3  Score=44.55  Aligned_cols=41  Identities=17%  Similarity=0.177  Sum_probs=38.7

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.+++++|++.|+++.++||..... +..+.+++|+.
T Consensus       599 plr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~ia~~lgi~  639 (1028)
T 2zxe_A          599 PPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGII  639 (1028)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTSS
T ss_pred             CCChhHHHHHHHHHHcCCEEEEECCCCHHH-HHHHHHHcCCC
Confidence            688999999999999999999999999988 89999999986

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=93.08  E-value=0.33  Score=43.94  Aligned_cols=42  Identities=12%  Similarity=0.098  Sum_probs=39.3

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      ++.|++.+++++|++.|+++.++||-.... +..+.+++|+..
T Consensus       535 p~R~ea~~aI~~l~~aGI~v~MiTGD~~~T-A~aIA~~lGI~~  576 (920)
T 1mhs_A          535 PPRHDTYKTVCEAKTLGLSIKMLTGDAVGI-ARETSRQLGLGT  576 (920)
T ss_dssp             CCCHHHHHHHHHHHHHTCEEEEEESSCHHH-HHHHHHHHTSSC
T ss_pred             cccccHHHHHHHHhhcCceEEEEcCCCHHH-HHHHHHHcCCCc
Confidence            689999999999999999999999999888 899999999963

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=92.86  E-value=0.037  Score=45.24  Aligned_cols=19  Identities=16%  Similarity=0.114  Sum_probs=15.2

Q ss_pred             ccEEEEecCCccccccccc
Q 032013           22 PRLVVFDLDYTLWPFYCEC   40 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~   40 (149)
                      +|.|+||+||++++-+.+|
T Consensus         1 ~~~~~fdvdgv~~~~~~~~   19 (384)
T 1qyi_A            1 MKKILFDVDGVFLSEERCF   19 (384)
T ss_dssp             CCEEEECSBTTTBCSHHHH
T ss_pred             CceEEEecCceeechhhhc
Confidence            3679999999999865553

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=92.51  E-value=0.068  Score=40.50  Aligned_cols=41  Identities=10%  Similarity=0.039  Sum_probs=31.9

Q ss_pred             CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .+++.+..++.  .++++++|++|.|+.|++.+++.||+.+.+
T Consensus       189 ~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~ag~~v~~  231 (268)
T 1nf2_A          189 VDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAM  231 (268)
T ss_dssp             CCHHHHHHHHHHHHTCCGGGEEEEECSHHHHHHHTTCSEEEEC
T ss_pred             CChHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHHcCCEEEe
Confidence            34554555554  567889999999999999999999986544

>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A

Probab=92.18  E-value=0.17  Score=42.54  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=45.6

Q ss_pred             CccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc---------CCCCCcccccccCCChhHHHHH
Q 032013           50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---------GIHSMFVPMVRLSCCIMCIIFF  108 (149)
Q Consensus        50 ~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~---------gl~~~f~~~~~~~p~p~~~i~~  108 (149)
                      -|.+..+|++|++.|.++.++||++... +...++.+         .+.++||.+....-+|  ..|.
T Consensus       188 ~~~l~~~L~~lr~~GKklFLiTNS~~~y-~~~~M~y~~~~~~~~g~dWrdlFDvVIv~A~KP--~FF~  252 (470)
T 4g63_A          188 EKEVVEGLKHFIRYGKKIFILTNSEYSY-SKLLLDYALSPFLDKGEHWQGLFEFVITLANKP--RFFY  252 (470)
T ss_dssp             CHHHHHHHHHHHTTTCEEEEECSSCHHH-HHHHHHHHTGGGSCTTCCGGGGCSEEEESCCTT--HHHH
T ss_pred             CHhHHHHHHHHHHcCCeEEEeeCCCchH-HHHHHHhhcccCCCCCCChhhhcCEEEECCCCC--Cccc
Confidence            4778899999999999999999999988 67777763         4778899887666666  5554

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=91.64  E-value=0.12  Score=39.49  Aligned_cols=30  Identities=7%  Similarity=-0.086  Sum_probs=25.9

Q ss_pred             hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          110 FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       110 ~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .++++++|++|.||.|++.++++||+.+.+
T Consensus       228 ~~~~~~~~~~~GD~~nD~~m~~~ag~~va~  257 (288)
T 1nrw_A          228 LNIPLEETAAVGDSLNDKSMLEAAGKGVAM  257 (288)
T ss_dssp             TTCCGGGEEEEESSGGGHHHHHHSSEEEEC
T ss_pred             hCCCHHHEEEEcCCHHHHHHHHHcCcEEEE
Confidence            567778999999999999999999985544

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=90.51  E-value=0.16  Score=38.60  Aligned_cols=41  Identities=12%  Similarity=-0.029  Sum_probs=31.8

Q ss_pred             CCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013           99 SCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus        99 ~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      .+++.+.-++.  .+++++++++|=|+.|.+..++.||+-+.+
T Consensus       208 ~~K~~al~~l~~~lgi~~~~~ia~GD~~NDi~ml~~ag~~vAm  250 (285)
T 3pgv_A          208 VSKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIM  250 (285)
T ss_dssp             CSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEEC
T ss_pred             CChHHHHHHHHHHhCCCHHHEEEECCcHhhHHHHHhcCCEEEc
Confidence            44555555555  567779999999999999999999966543

>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A

Probab=88.87  E-value=1.3  Score=32.04  Aligned_cols=88  Identities=8%  Similarity=0.024  Sum_probs=62.0

Q ss_pred             hHHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCc-eEEEEeCCCchHHHHHHHHH
Q 032013            7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHK   85 (149)
Q Consensus         7 ~~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi-~i~IaT~~~~~~i~~~~l~~   85 (149)
                      +++++.++.....+.-..|++|..|.-+++              ++..+.|+.+...|. .++++=|++... ...+.++
T Consensus        60 ~~~Eg~~il~~i~~~~~vI~LD~~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~FvIGG~~Gl-~~~v~~r  124 (163)
T 4fak_A           60 KEKEGQRILAKIKPQSTVITLEIQGKMLSS--------------EGLAQELNQRMTQGQSDFVFVIGGSNGL-HKDVLQR  124 (163)
T ss_dssp             HHHHHHHHHHTCCTTSEEEEEEEEEEECCH--------------HHHHHHHHHHHHTTCCEEEEEECBTTBC-CHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCcCCH--------------HHHHHHHHHHHhcCCcceEEEEECCCcc-CHHHHHh
Confidence            345555554444444568999999999973              567788999988886 799999888765 4666666


Q ss_pred             cCCCCCcccccccCCChhHHHHHHhh
Q 032013           86 LGIHSMFVPMVRLSCCIMCIIFFLFF  111 (149)
Q Consensus        86 ~gl~~~f~~~~~~~p~p~~~i~~~~~  111 (149)
                      .+.  .++.....=||++..+.+.++
T Consensus       125 A~~--~lSlS~mTfpHqL~RliL~EQ  148 (163)
T 4fak_A          125 SNY--ALSFSKMTFPHQMMRVVLIEQ  148 (163)
T ss_dssp             CSE--EEESCSSCCCHHHHHHHHHHH
T ss_pred             cCc--eEEEecCCCCHHHHHHHHHHH
Confidence            543  244445668999998887643

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=87.56  E-value=0.39  Score=43.27  Aligned_cols=41  Identities=12%  Similarity=0.102  Sum_probs=38.4

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCC
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~   89 (149)
                      ++.|++.+++++|++.|+++.++||-.... +..+.+++|+.
T Consensus       488 p~R~~a~~aI~~l~~aGI~v~MiTGD~~~t-A~~iA~~lGi~  528 (885)
T 3b8c_A          488 PPRHDSAETIRRALNLGVNVKMITGDQLAI-GKETGRRLGMG  528 (885)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCEEEESSCHHH-HTHHHHTTTCT
T ss_pred             ccchhHHHHHHHHHHcCCcEEEEcCCChHH-HHHHHHHhCCc
Confidence            688999999999999999999999999888 89999999985

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=87.27  E-value=0.11  Score=39.50  Aligned_cols=20  Identities=15%  Similarity=-0.154  Sum_probs=16.4

Q ss_pred             CCCccEEEEecCCccccccc
Q 032013           19 ENLPRLVVFDLDYTLWPFYC   38 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~   38 (149)
                      ...+++++||.||||+.+.+
T Consensus        25 l~~i~~v~fDktGTLT~g~~   44 (263)
T 2yj3_A           25 IKEIDTIIFEKTGTLTYGTP   44 (263)
Confidence            34588999999999998644

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}

Probab=86.01  E-value=5.1  Score=26.69  Aligned_cols=69  Identities=12%  Similarity=0.008  Sum_probs=46.5

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p  100 (149)
                      .++.+++|+-++-.=     ++     .-..-..++.++++++|.++.++.-++  . +...++..|+.+.|.....+..
T Consensus        47 ~~~~vvlDls~v~~i-----Ds-----sgl~~L~~~~~~~~~~g~~l~l~~~~~--~-v~~~l~~~gl~~~~~~~~i~~t  113 (130)
T 2kln_A           47 QVEWFVLNAESNVEV-----DL-----TALDALDQLRTELLRRGIVFAMARVKQ--D-LRESLRAASLLDKIGEDHIFMT  113 (130)
T ss_dssp             CCEEEEEECSCCSSS-----BC-----STTTHHHHHHHHHHTTTEEEEEECCSS--H-HHHHHHHCTTHHHHCTTEEESC
T ss_pred             CceEEEEECCCCChh-----hH-----HHHHHHHHHHHHHHHCCCEEEEEcCCH--H-HHHHHHHcCChhhcCcceeECC
Confidence            468899999876542     12     233455688899999999998776543  4 5788999998766544344433


Q ss_pred             Ch
Q 032013          101 CI  102 (149)
Q Consensus       101 ~p  102 (149)
                      -.
T Consensus       114 ~~  115 (130)
T 2kln_A          114 LP  115 (130)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=85.92  E-value=0.57  Score=35.58  Aligned_cols=40  Identities=10%  Similarity=-0.063  Sum_probs=30.4

Q ss_pred             CChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          100 CCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       100 p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++.+.-++.  .+++++++++|.|+.|++..++.||+-+.+
T Consensus       198 ~K~~~l~~l~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~va~  239 (282)
T 1rkq_A          198 NKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAV  239 (282)
T ss_dssp             SHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEC
T ss_pred             CCHHHHHHHHHHhCCCHHHEEEECCcHHHHHHHHHCCcEEEe
Confidence            4444444444  567789999999999999999999975433

>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}

Probab=85.08  E-value=4.4  Score=32.40  Aligned_cols=86  Identities=10%  Similarity=-0.006  Sum_probs=51.3

Q ss_pred             HHHHHHHHHC-CceE-EEEeCCCchHHHHHHHHHcCCCCCccc-ccccCCChh---HHHHHH-----hhCCCcceEEEee
Q 032013           54 KGILEALKEK-GIHV-AVASRSPAPDIAKTFLHKLGIHSMFVP-MVRLSCCIM---CIIFFL-----FFFSISAFILFVD  122 (149)
Q Consensus        54 ~e~L~~Lk~~-Gi~i-~IaT~~~~~~i~~~~l~~~gl~~~f~~-~~~~~p~p~---~~i~~~-----~~~~~~~~l~~eD  122 (149)
                      ..+++.|+++ ++.+ .++||..... ....++.+++..-++. +........   +.....     ....|.-.+++.|
T Consensus        42 a~li~~l~~~~~~~~~~~~tG~h~~~-~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~g~  120 (396)
T 3dzc_A           42 APLVQQLCQDNRFVAKVCVTGQHREM-LDQVLELFSITPDFDLNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGD  120 (396)
T ss_dssp             HHHHHHHHHCTTEEEEEEECCSSSHH-HHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETT
T ss_pred             HHHHHHHHhCCCCcEEEEEecccHHH-HHHHHHhcCCCCceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            4678888886 7877 4777777654 5777888998422221 111111111   111111     3367777777776


Q ss_pred             hHh---HHHHHHHhCCchhhh
Q 032013          123 LFC---FMYAAAYVGCDLYVY  140 (149)
Q Consensus       123 s~~---gi~aa~~ag~~~~~~  140 (149)
                      -..   +..+|+..|++++.+
T Consensus       121 ~~~~~~~~~aa~~~~IPv~h~  141 (396)
T 3dzc_A          121 TATTFAASLAAYYQQIPVGHV  141 (396)
T ss_dssp             SHHHHHHHHHHHTTTCCEEEE
T ss_pred             chhHHHHHHHHHHhCCCEEEE
Confidence            544   567788889997654

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=84.60  E-value=0.62  Score=35.97  Aligned_cols=40  Identities=13%  Similarity=0.009  Sum_probs=30.7

Q ss_pred             CChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          100 CCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       100 p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      +++.+.-++.  .+++++++++|-|+.|++..+++||+.+.+
T Consensus       224 ~K~~~l~~l~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~va~  265 (301)
T 2b30_A          224 DKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKYSFAV  265 (301)
T ss_dssp             CHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHSCSEEEEC
T ss_pred             CcHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCeEEE
Confidence            4444455544  567779999999999999999999986543

>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*

Probab=83.71  E-value=6.6  Score=29.28  Aligned_cols=68  Identities=10%  Similarity=0.089  Sum_probs=43.1

Q ss_pred             HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCChhHHHHHHh------hCCCcceEEEeehHhHHH
Q 032013           55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLF------FFSISAFILFVDLFCFMY  128 (149)
Q Consensus        55 e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~------~~~~~~~l~~eDs~~gi~  128 (149)
                      ++++++++.+.+++++|+..... .....-..|..+|+.     ||.+....++..      .-....-+++||.+.-..
T Consensus        65 ~~~~~lr~~~~pvi~lt~~~~~~-~~~~a~~~Ga~dyl~-----Kp~~~~~~~~~~~~~~~~~~~~~~ILivDD~~~~~~  138 (259)
T 3luf_A           65 EAVKVLLERGLPVVILTADISED-KREAWLEAGVLDYVM-----KDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRH  138 (259)
T ss_dssp             HHHHHHHHTTCCEEEEECC-CHH-HHHHHHHTTCCEEEE-----CSSHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEccCCHH-HHHHHHHCCCcEEEe-----CCchhHHHHHHHhhhhHhhcCCCcEEEEeCCHHHHH
Confidence            67888888899999999987766 455555678776653     565543333321      112346688888776443

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=82.14  E-value=9.9  Score=26.77  Aligned_cols=102  Identities=15%  Similarity=0.133  Sum_probs=65.9

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEe---CCCchHHHHHHHHHcCCCCCccccccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT---~~~~~~i~~~~l~~~gl~~~f~~~~~~   98 (149)
                      +|+|+||+||||++.      .    ...+...++++.++++|+++.++|   +++... +...+...|+...  .....
T Consensus         3 ~k~i~fDlDGTLl~~------~----~~~~~~~~~~~~l~~~g~~~~~~t~~~g~~~~~-~~~~~~~~g~~~~--~~~~~   69 (250)
T 2c4n_A            3 IKNVICDIDGVLMHD------N----VAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQD-LANRFATAGVDVP--DSVFY   69 (250)
T ss_dssp             CCEEEEECBTTTEET------T----EECTTHHHHHHHHHHTTCCEEEEESCCSCCHHH-HHHHHHHTTCCCC--GGGEE
T ss_pred             ccEEEEcCcceEEeC------C----EeCcCHHHHHHHHHHcCCcEEEEECCCCCCHHH-HHHHHHHcCCCCC--HHHeE
Confidence            789999999999983      2    233455889999999999999999   555555 4566666665311  11111


Q ss_pred             CCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchh
Q 032013           99 SCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLY  138 (149)
Q Consensus        99 ~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~  138 (149)
                      ...-....|..  .-....+.+++...-+...++.|.++.
T Consensus        70 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~g~~~~  107 (250)
T 2c4n_A           70 TSAMATADFLR--RQEGKKAYVVGEGALIHELYKAGFTIT  107 (250)
T ss_dssp             EHHHHHHHHHH--TSSCCEEEEECCTHHHHHHHHTTCEEC
T ss_pred             cHHHHHHHHHH--hcCCCEEEEEcCHHHHHHHHHcCCccc
Confidence            11100122322  223467788888888888888887765

>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3

Probab=81.83  E-value=2.8  Score=29.93  Aligned_cols=86  Identities=14%  Similarity=0.106  Sum_probs=58.6

Q ss_pred             HHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013            8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus         8 ~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      ++++..+.....+. ..|++|..|.-+++              +...+.|+.+...|-.++++=|++... ...+.+..+
T Consensus        54 ~~E~~~il~~i~~~-~vi~Ld~~Gk~~sS--------------~~fA~~l~~~~~~g~~i~FvIGG~~Gl-~~~v~~rA~  117 (155)
T 1ns5_A           54 DKEGEQMLAAAGKN-RIVTLDIPGKPWDT--------------PQLAAELERWKLDGRDVSLLIGGPEGL-SPACKAAAE  117 (155)
T ss_dssp             HHHHHHHHHHHTTS-EEEEEEEEEECCCH--------------HHHHHHHHHHHHHCSCEEEEECBTTBC-CHHHHHHCS
T ss_pred             HHHHHHHHHhcCCC-cEEEEcCCCCcCCH--------------HHHHHHHHHHHhcCCeEEEEEECCCCC-CHHHHHhhC
Confidence            34454444333333 58999999999973              467788888888887788888888665 456666654


Q ss_pred             CCCCcccccccCCChhHHHHHHhh
Q 032013           88 IHSMFVPMVRLSCCIMCIIFFLFF  111 (149)
Q Consensus        88 l~~~f~~~~~~~p~p~~~i~~~~~  111 (149)
                      .  .++.....=||++..+.+.++
T Consensus       118 ~--~lSlS~mT~pHql~RliL~EQ  139 (155)
T 1ns5_A          118 Q--SWSLSALTLPHPLVRVLVAES  139 (155)
T ss_dssp             E--EECCCSSCCCHHHHHHHHHHH
T ss_pred             c--eEEccCCCCcHHHHHHHHHHH
Confidence            2  244445667999998887643

>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3

Probab=81.03  E-value=4.8  Score=29.04  Aligned_cols=87  Identities=7%  Similarity=0.023  Sum_probs=58.1

Q ss_pred             HHHHHhhhhccCCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCC-ceEEEEeCCCchHHHHHHHHHc
Q 032013            8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKL   86 (149)
Q Consensus         8 ~~~~~~~~~~~~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~~i~~~~l~~~   86 (149)
                      ++++..+.....+.-..|++|..|..+++              +...+.|+.+...| -.++++=|++... ...+.+..
T Consensus        57 ~~E~~~il~~i~~~~~vI~LD~~Gk~~sS--------------~~fA~~l~~~~~~G~~~i~FvIGGa~Gl-~~~v~~rA  121 (167)
T 1to0_A           57 DKEGDRILSKISPDAHVIALAIEGKMKTS--------------EELADTIDKLATYGKSKVTFVIGGSLGL-SDTVMKRA  121 (167)
T ss_dssp             HHHHHHHHTTSCTTSEEEEEEEEEEECCH--------------HHHHHHHHHHHTTTCCEEEEEECCSSCC-CHHHHHHC
T ss_pred             HHHHHHHHhhcCCCCEEEEEcCCCCcCCH--------------HHHHHHHHHHHhcCCceEEEEEECCCCC-CHHHHHhh
Confidence            34454443332222237999999999973              46778888888887 5688888888665 45666665


Q ss_pred             CCCCCcccccccCCChhHHHHHHhh
Q 032013           87 GIHSMFVPMVRLSCCIMCIIFFLFF  111 (149)
Q Consensus        87 gl~~~f~~~~~~~p~p~~~i~~~~~  111 (149)
                      +.  .++.....=||++..+.+.++
T Consensus       122 ~~--~lSlS~mTfpHqL~RliL~EQ  144 (167)
T 1to0_A          122 DE--KLSFSKMTFPHQLMRLILVEQ  144 (167)
T ss_dssp             SE--EEESCSSCCCHHHHHHHHHHH
T ss_pred             Cc--EEEccCCCCcHHHHHHHHHHH
Confidence            43  244445668999998888643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1u7pa_	164	c.108.1.17 (A:) Magnesium-dependent phosphatase-1,	2e-10
d2b30a1	283	c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmod	5e-05
d1rlma_	269	c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Esc	4e-04
d2rbka1	260	c.108.1.10 (A:2-261) Sugar-phosphate phosphatase B	4e-04
d1nrwa_	285	c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillu	5e-04
d1rkqa_	271	c.108.1.10 (A:) Hypothetical protein YidA {Escheri	0.001
d2amya1	243	c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (	0.003
d1wr8a_	230	c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPa	0.003
d1xvia_	232	c.108.1.10 (A:) Putative mannosyl-3-phosphoglycera	0.004
d1qyia_	380	c.108.1.13 (A:) Hypothetical protein MW1667 (SA154	0.004

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 21  LPRLVVFDLDYTLWPFYCECCYEDEI---------------PYLYPHAKGILEALKEKGI 65
           LP+L VFDLDYTLWPF+ +   +                    LYP    +L  L+  G+
Sbjct: 4   LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGV 63

Query: 66  HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIMCIIFF 108
            VA ASR+     A   L    +   F+         +     
Sbjct: 64  PVAAASRTSEIQGANQLLELFDLGKYFIQREIYPGSKVTHFER 106

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]} Length = 283

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +L++ D D TL        + D+   +       ++   EKG  V++ +      I  + 
Sbjct: 11  KLLLIDFDGTL--------FVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGI-LSA 61

Query: 83  LHKLGIHSMFVPMVRLSCCIMCIIF 107
             +  +  M    +        I++
Sbjct: 62  FGEENLKKMNFYGMPGVYINGTIVY 86

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]} Length = 269

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +++V D+D T           D   Y  P      + LK++GI   VAS +    +  +F
Sbjct: 3   KVIVTDMDGTF--------LNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQL-ISF 53

Query: 83  LHKLGIHSMFVPMVRLSCC 101
             +L     FV        
Sbjct: 54  FPELKDEISFVAENGALVY 72

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 260

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           + + FD+D TL           E   +       LEA   KG+ + +A+  P   I    
Sbjct: 2   KALFFDIDGTL--------VSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINN-- 51

Query: 83  LHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFM 127
           L +L   ++    + ++     +   + + S         +  F 
Sbjct: 52  LSELQDRNLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFC 96

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]} Length = 285

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 5e-04
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 10/86 (11%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +L+  DLD TL         + ++       +  L   +  GI V V++     D+  + 
Sbjct: 2   KLIAIDLDGTL------LNSKHQVS---LENENALRQAQRDGIEVVVSTGRAHFDV-MSI 51

Query: 83  LHKLGIHSMFVPMVRLSCCIMCIIFF 108
              LGI +  +              +
Sbjct: 52  FEPLGIKTWVISANGAVIHDPEGRLY 77

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]} Length = 271

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 10/107 (9%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +L+  D+D TL               + P  K  + A + +G++V + +  P   +   +
Sbjct: 5   KLIAIDMDGTLL---------LPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGV-HNY 54

Query: 83  LHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYA 129
           L +L +       +  +  ++         + +A       F    +
Sbjct: 55  LKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLS 101

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 9/87 (10%)

Query: 22  PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
           P L +FD+D TL           +I          L+ L++K     V          + 
Sbjct: 3   PALCLFDVDGTLTAP------RQKIT---KEMDDFLQKLRQKIKIGVVGGSDFEKVQEQL 53

Query: 82  FLHKLGIHSMFVPMVRLSCCIMCIIFF 108
               +  +    P   L       +  
Sbjct: 54  GNDVVEKYDYVFPENGLVAYKDGKLLC 80

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]} Length = 230

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 9/111 (8%), Positives = 25/111 (22%), Gaps = 9/111 (8%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           + +  D+D T+               ++  A   +   +  GI + + + +         
Sbjct: 3   KAISIDIDGTIT---------YPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAAS 53

Query: 83  LHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYV 133
           +       +              IF             +         +Y 
Sbjct: 54  ILIGTSGPVVAEDGGAISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYT 104

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
          P LV  DLD TL          D   Y +  A   L  L+E  + V + S   + ++   
Sbjct: 4  PLLVFSDLDGTLL---------DSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEM-LY 53

Query: 82 FLHKLGIHSMFVPM 95
              LG+  + +  
Sbjct: 54 LQKTLGLQGLPLIA 67

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Length = 380

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101
           Y++ I       K +L  LK  G  + +A+  P           LG+   F      +  
Sbjct: 209 YQEIILRPVDEVKVLLNDLKGAGFELGIATGRP-YTETVVPFENLGLLPYFEADFIATAS 267

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.93
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	99.89
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	99.87
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	99.86
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	99.86
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	99.84
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	99.84
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	99.84
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	99.83
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	99.83
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	99.83
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	99.82
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	99.81
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	99.8
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	99.79
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	99.77
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	99.76
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	99.76
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	99.75
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	99.73
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	99.71
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	99.69
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	99.65
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	99.58
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.55
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	99.53
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	99.51
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.45
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	99.43
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	99.4
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	99.39
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	99.28
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	99.24
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	99.18
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	99.18
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	99.14
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	99.12
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	99.05
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	99.03
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	98.99
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	98.9
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	98.88
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	98.87
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	98.86
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	98.82
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	98.78
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	98.73
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	98.65
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	98.64
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	98.57
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	98.48
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	98.4
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	98.3
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	98.21
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	98.19
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	97.85
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	97.4
d2bdea1	458	Cytosolic IMP-GMP specific 5'-nucleotidase {Legion	91.85
d1jx7a_	117	Hypothetical protein YchN {Escherichia coli [TaxId	82.16
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	81.34
d1vc1a_	110	Anti-sigma factor antagonist SpoIIaa {Thermotoga m	80.23

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=162.92  Aligned_cols=123  Identities=26%  Similarity=0.395  Sum_probs=100.2

Q ss_pred             CCCccEEEEecCCcccccccccc---------------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECC---------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~---------------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l   83 (149)
                      ...||+|+||+|||||+.+...+               ...+...++||+.++|++|+++|++++|+||++....+...+
T Consensus         2 ~~~pK~viFDlDGTL~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l   81 (164)
T d1u7pa_           2 TRLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLL   81 (164)
T ss_dssp             CCCCSEEEECCBTTTBSSCTTTTCCSCEEECTTSCEEETTCCEECCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHH
T ss_pred             CCCCCEEEEcCCCcccCCccccccCccHhHHhcchHhhhhccccccchHHHHHHHHHHHCCCcEEEEeccccchhhccch
Confidence            34589999999999999755522               233446899999999999999999999999988765357778


Q ss_pred             HHcCCCCCccccc-ccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhh
Q 032013           84 HKLGIHSMFVPMV-RLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus        84 ~~~gl~~~f~~~~-~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +.+++..+|..+. ..+|+|.+...+.  .+++|++|++++|++.++++|++|||++|.+.
T Consensus        82 ~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~l~igD~~~di~aA~~aG~~~i~v~  142 (164)
T d1u7pa_          82 ELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIR  142 (164)
T ss_dssp             HHTTCGGGCSEEEESSSCHHHHHHHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEEEECS
T ss_pred             hcccccccceeeecccCCChHHHHHHHHHhCCChHHEEEEcCCHHHHHHHHHcCCEEEEEC
Confidence            9999998888764 5577775544443  66888999999999999999999999998764

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=8.3e-24  Score=156.86  Aligned_cols=92  Identities=17%  Similarity=0.132  Sum_probs=80.9

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      .+++||+.++|++|+++|++++|+||+++.. +...++.+|+.++|+.+.      ..||+|  ++|..    .++.|++
T Consensus        87 ~~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~~l~~~F~~i~~~~~~~~~Kp~~--~~~~~~~~~l~~~~~~  163 (218)
T d1te2a_          87 RPLLPGVREAVALCKEQGLLVGLASASPLHM-LEKVLTMFDLRDSFDALASAEKLPYSKPHP--QVYLDCAAKLGVDPLT  163 (218)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEECTTSSCCTTST--HHHHHHHHHHTSCGGG
T ss_pred             ccccchHHHHHHHhhhccccccccccccccc-cccccccccccccccccccccccccchhhH--HHHHHHHHHcCCCchh
Confidence            4578999999999999999999999999998 799999999999998762      347777  55554    6788999


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |++++|++.+|.+|+++||++|.+.
T Consensus       164 ~l~igD~~~di~aA~~~G~~~i~v~  188 (218)
T d1te2a_         164 CVALEDSVNGMIASKAARMRSIVVP  188 (218)
T ss_dssp             EEEEESSHHHHHHHHHTTCEEEECC
T ss_pred             cEEEeeCHHHHHHHHHcCCEEEEEC
Confidence            9999999999999999999998764

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=99.87  E-value=2.7e-22  Score=148.24  Aligned_cols=96  Identities=26%  Similarity=0.399  Sum_probs=82.9

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhCCCcc
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ....++||+.++|++|+++|++++++||+++.. ++..++.+|+..+|+.+      ...||+|.....+.  .++++++
T Consensus        92 ~~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  170 (224)
T d2hsza1          92 NISRLYPNVKETLEALKAQGYILAVVTNKPTKH-VQPILTAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQ  170 (224)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGCSEEECTTTSSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             cccchHHHHHHHHHHHhccCCcccccccccHHH-HHHHHHhcCchhhccccccccccccccccchhhHHHHHHhhhhhhc
Confidence            346789999999999999999999999999998 79999999999999875      24477775544444  6688899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |+.++|++++|.+|++|||+++.+.
T Consensus       171 ~~~igD~~~Di~~A~~aG~~~i~v~  195 (224)
T d2hsza1         171 ILFVGDSQNDIFAAHSAGCAVVGLT  195 (224)
T ss_dssp             EEEEESSHHHHHHHHHHTCEEEEES
T ss_pred             cchhcCcHHHHHHHHHcCCeEEEEe
Confidence            9999999999999999999988764

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.86  E-value=3e-22  Score=147.37  Aligned_cols=95  Identities=19%  Similarity=0.192  Sum_probs=79.1

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      ....++||+.++|+.|+++|++++|+||++. . +...++++|+.+||+.+.      ..||+|..+.++.  .+++|++
T Consensus        79 ~~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~-~~~~l~~~gl~~~f~~i~~s~~~~~~Kp~~~~~~~~~~~~~~~p~~  156 (204)
T d2go7a1          79 AQVVLMPGAREVLAWADESGIQQFIYTHKGN-N-AFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDN  156 (204)
T ss_dssp             GGCEECTTHHHHHHHHHHTTCEEEEECSSCT-H-HHHHHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             ccCcccchHHhhhhcccccccchhhhcccch-h-hhhhhhhcccccccccccccccccccchhHHHHHHHHHHhCCCCce
Confidence            4467899999999999999999999999876 4 467899999999998762      3467774443333  6788899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |+.++|+++++.+|+++||+++.+.
T Consensus       157 ~l~VgD~~~Di~~A~~~G~~~i~v~  181 (204)
T d2go7a1         157 TYYIGDRTLDVEFAQNSGIQSINFL  181 (204)
T ss_dssp             EEEEESSHHHHHHHHHHTCEEEESS
T ss_pred             EEEEeCCHHHHHHHHHcCCeEEEEc
Confidence            9999999999999999999998653

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.86  E-value=5.7e-22  Score=144.95  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=81.5

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHHhhCCCcceE
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFLFFFSISAFI  118 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~~~~~~~~~l  118 (149)
                      ....++||+.++|++|+++|++++|+||++...  ...++++++..+|+.+.      ..||+|..+..+...+++++|+
T Consensus        76 ~~~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~~~--~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~l  153 (187)
T d2fi1a1          76 EHPILFEGVSDLLEDISNQGGRHFLVSHRNDQV--LEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISSGL  153 (187)
T ss_dssp             TSCCBCTTHHHHHHHHHHTTCEEEEECSSCTHH--HHHHHHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCSSEE
T ss_pred             hcCcccchhHHHHHHHHhhhccccccccCccch--hhhhhhhccccccccccccccccccCCCHHHHHHHHHHcCCCCeE
Confidence            446789999999999999999999999987654  46799999999998763      3477786555555778899999


Q ss_pred             EEeehHhHHHHHHHhCCchhhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +++|++.++++|++||++++.+.+
T Consensus       154 ~vgDs~~Di~aA~~aG~~~i~v~~  177 (187)
T d2fi1a1         154 VIGDRPIDIEAGQAAGLDTHLFTS  177 (187)
T ss_dssp             EEESSHHHHHHHHHTTCEEEECSC
T ss_pred             EEeCCHHHHHHHHHcCCEEEEECC
Confidence            999999999999999999988754

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=99.84  E-value=1.5e-21  Score=148.14  Aligned_cols=92  Identities=10%  Similarity=-0.015  Sum_probs=76.5

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCc-ccc----c--ccCCChhHHHHHH----hhCCC
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF-VPM----V--RLSCCIMCIIFFL----FFFSI  114 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f-~~~----~--~~~p~p~~~i~~~----~~~~~  114 (149)
                      ...++||+.++|++|+++|++++|+||+++.. +...++.+|+..+| +..    .  ..||+|  ++|.+    .++.|
T Consensus        97 ~~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~-~~~~l~~~~l~~~f~d~~~~~d~~~~~KP~p--~~~~~~~~~l~~~p  173 (257)
T d1swva_          97 YASPINGVKEVIASLRERGIKIGSTTGYTREM-MDIVAKEAALQGYKPDFLVTPDDVPAGRPYP--WMCYKNAMELGVYP  173 (257)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHHHHTTCCCSCCBCGGGSSCCTTSS--HHHHHHHHHHTCCS
T ss_pred             cCccCCcHHHHHHHHHhcccceeecCCCchhh-HHHHHHHHhhcccccccccccccccccccCh--HHHHHHHHHhCCCC
Confidence            35689999999999999999999999999988 79999999998876 433    1  336777  55554    55544


Q ss_pred             -cceEEEeehHhHHHHHHHhCCchhhh
Q 032013          115 -SAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       115 -~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                       ++|++++|+.++|++|++|||.+|.+
T Consensus       174 ~~~~v~VgDs~~Di~aA~~aG~~ti~v  200 (257)
T d1swva_         174 MNHMIKVGDTVSDMKEGRNAGMWTVGV  200 (257)
T ss_dssp             GGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred             cceEEEEeCChhhHHHHHHCCCEEEEE
Confidence             88999999999999999999998754

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.84  E-value=5.7e-22  Score=146.33  Aligned_cols=95  Identities=9%  Similarity=0.074  Sum_probs=79.3

Q ss_pred             CCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcc
Q 032013           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISA  116 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~  116 (149)
                      +..+++||+.++|++|++ +++++|+||++... +...++.+|+..+|+.+.      ..||+|.....+.  .+++|++
T Consensus        79 ~~~~~~~g~~~~L~~l~~-~~~~~ivT~~~~~~-~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~  156 (207)
T d2hdoa1          79 DQIELYPGITSLFEQLPS-ELRLGIVTSQRRNE-LESGMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQN  156 (207)
T ss_dssp             GGCEECTTHHHHHHHSCT-TSEEEEECSSCHHH-HHHHHTTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHHTTCCGGG
T ss_pred             cccccccchhhhhhhhcc-cccccccccccccc-cccccccccccccccccccccccccchhhhhhhcccccceeeeccc
Confidence            346799999999999985 69999999999888 799999999999998762      3467774444443  5577899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      |+.++||+++|++|++|||+++.+.
T Consensus       157 ~l~VgDs~~Di~~a~~aG~~~i~v~  181 (207)
T d2hdoa1         157 ALFIGDSVSDEQTAQAANVDFGLAV  181 (207)
T ss_dssp             EEEEESSHHHHHHHHHHTCEEEEEG
T ss_pred             eeEecCCHHHHHHHHHcCCeEEEEe
Confidence            9999999999999999999988653

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.84  E-value=2.5e-21  Score=143.50  Aligned_cols=92  Identities=21%  Similarity=0.156  Sum_probs=77.9

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------cccCCChhHHHHHH----hhCCCc
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL----FFFSIS  115 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~----~~~~~~  115 (149)
                      ...++||+.++|+.|+++|++++++||+..   ....++..++..+|+.+      ...||+|  .+|..    .+++|+
T Consensus        89 ~~~~~~g~~~~l~~l~~~~~~i~i~s~~~~---~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~--~~~~~~l~~~~i~~~  163 (221)
T d1o08a_          89 PADVYPGILQLLKDLRSNKIKIALASASKN---GPFLLERMNLTGYFDAIADPAEVAASKPAP--DIFIAAAHAVGVAPS  163 (221)
T ss_dssp             GGGBCTTHHHHHHHHHHTTCEEEECCSCTT---HHHHHHHTTCGGGCSEECCTTTSSSCTTST--HHHHHHHHHTTCCGG
T ss_pred             cccccCCceeccccccccccceEEEeecch---hhHHHHhhccccccccccccccccccccCh--HHHHHHHHHcCCCCc
Confidence            457899999999999999999999999743   46789999999998865      2447777  55554    667889


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|+.++|++++|++|++|||++|.+.+
T Consensus       164 ~~l~VgD~~~di~~A~~aG~~~i~v~~  190 (221)
T d1o08a_         164 ESIGLEDSQAGIQAIKDSGALPIGVGR  190 (221)
T ss_dssp             GEEEEESSHHHHHHHHHHTCEEEEESC
T ss_pred             eEEEEecCHHHHHHHHHcCCEEEEECC
Confidence            999999999999999999999987654

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=99.83  E-value=5.6e-21  Score=141.13  Aligned_cols=97  Identities=14%  Similarity=0.122  Sum_probs=82.4

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH--hhCCCcce
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL--FFFSISAF  117 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~--~~~~~~~~  117 (149)
                      ...++|++.++++.++++|++++++||+.... .+..++..++..+|+.+.      ..||+|..+.++.  .++.|++|
T Consensus        91 ~~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~-~~~~~~~~~~~~~fd~~~~s~~~~~~KP~p~~~~~~~~~~g~~p~e~  169 (220)
T d1zrna_          91 RLAPFSEVPDSLRELKRRGLKLAILSNGSPQS-IDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAI  169 (220)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGGE
T ss_pred             cccccchhHHHHHHHHhcCCeEEeecchHHHH-HHHHHhhccccccccceeeeeeeeccccHHHHHHHHHHHhCCCCceE
Confidence            35688999999999999999999999999888 799999999999988762      3477774444443  67888999


Q ss_pred             EEEeehHhHHHHHHHhCCchhhhhhh
Q 032013          118 ILFVDLFCFMYAAAYVGCDLYVYKRL  143 (149)
Q Consensus       118 l~~eDs~~gi~aa~~ag~~~~~~~~~  143 (149)
                      +.++|++.+|++|++||++++.+.|-
T Consensus       170 l~VgD~~~Di~~A~~aG~~~v~v~r~  195 (220)
T d1zrna_         170 LFVASNAWDATGARYFGFPTCWINRT  195 (220)
T ss_dssp             EEEESCHHHHHHHHHHTCCEEEECTT
T ss_pred             EEEecChHhHHHHHHcCCEEEEEcCC
Confidence            99999999999999999999977653

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.83  E-value=3.5e-21  Score=141.73  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=80.6

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc----cccCCChhHHHHHH--hhCCCcceEE
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM----VRLSCCIMCIIFFL--FFFSISAFIL  119 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~----~~~~p~p~~~i~~~--~~~~~~~~l~  119 (149)
                      ...++|++.++|+.++.+ ++++++||++... ++..++++|+..+|+.+    ...+|+|.+..++.  .+++|++|++
T Consensus        82 ~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~gl~~~fd~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~  159 (210)
T d2ah5a1          82 EAQLFPQIIDLLEELSSS-YPLYITTTKDTST-AQDMAKNLEIHHFFDGIYGSSPEAPHKADVIHQALQTHQLAPEQAII  159 (210)
T ss_dssp             SCEECTTHHHHHHHHHTT-SCEEEEEEEEHHH-HHHHHHHTTCGGGCSEEEEECSSCCSHHHHHHHHHHHTTCCGGGEEE
T ss_pred             cccchhHHHHHHhhhhcc-cchhhcccccchh-hhHHHHhhcccccccccccccccccccccccchhhhhhhccccccee
Confidence            467899999999999877 5899999999888 79999999999999876    34577786555554  6688899999


Q ss_pred             EeehHhHHHHHHHhCCchhhhh
Q 032013          120 FVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       120 ~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      ++||+++|.||++|||+++.+.
T Consensus       160 VGDs~~Di~aa~~aGi~~i~v~  181 (210)
T d2ah5a1         160 IGDTKFDMLGARETGIQKLAIT  181 (210)
T ss_dssp             EESSHHHHHHHHHHTCEEEEES
T ss_pred             ecCCHHHHHHHHHcCCeEEEEc
Confidence            9999999999999999998753

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-20  Score=138.81  Aligned_cols=93  Identities=12%  Similarity=0.079  Sum_probs=79.4

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc-------cccCCChhHHHHHH----hhCCCc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM-------VRLSCCIMCIIFFL----FFFSIS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~-------~~~~p~p~~~i~~~----~~~~~~  115 (149)
                      ..++||+.++|++|+++|++++|+||++... ....++..++..+|+..       ...||+|  .+|..    .++.|+
T Consensus       126 ~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~KP~p--~~~~~~~~~~~~~p~  202 (253)
T d1zs9a1         126 AEFFADVVPAVRKWREAGMKVYIYSSGSVEA-QKLLFGHSTEGDILELVDGHFDTKIGHKVES--ESYRKIADSIGCSTN  202 (253)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHTBTTBCCGGGCSEEECGGGCCTTCH--HHHHHHHHHHTSCGG
T ss_pred             cccCCCHHHHHHHHhhccCceeecCCCcHHH-HHHHHHHcCcchhhhhcceeeccccccCCCc--HHHHHHHHHhCCCcC
Confidence            4578999999999999999999999999888 68899999988776642       2357777  55554    678899


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|++++|++++|.+|++|||+++.+-|
T Consensus       203 ~~l~vgD~~~dv~aA~~aG~~ti~v~r  229 (253)
T d1zs9a1         203 NILFLTDVTREASAAEEADVHVAVVVR  229 (253)
T ss_dssp             GEEEEESCHHHHHHHHHTTCEEEEECC
T ss_pred             cEEEEeCCHHHHHHHHHcCCEEEEEeC
Confidence            999999999999999999999988643

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.82  E-value=1.4e-20  Score=140.51  Aligned_cols=93  Identities=15%  Similarity=0.080  Sum_probs=78.0

Q ss_pred             CCCccCccHHHHHHHHHHCC-ceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----h---
Q 032013           45 EIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----F---  110 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~---  110 (149)
                      +..+++||+.++|++|+++| ++++|+||++... +...++.+|+..+|+.+.      ..+|.|  .+++.    .   
T Consensus        88 ~~~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~-~~~~l~~~gl~~~fd~i~~~~~~~~~k~~p--~~~~~~~~~~~~~  164 (228)
T d2hcfa1          88 EDITLLEGVRELLDALSSRSDVLLGLLTGNFEAS-GRHKLKLPGIDHYFPFGAFADDALDRNELP--HIALERARRMTGA  164 (228)
T ss_dssp             GGEEECTTHHHHHHHHHTCTTEEEEEECSSCHHH-HHHHHHTTTCSTTCSCEECTTTCSSGGGHH--HHHHHHHHHHHCC
T ss_pred             cCceecCchHHHHhhhhccccccccccCCCcchh-hhhhhhhhcccccccccccccccccccchh--HHHHHHhhhhccc
Confidence            34578999999999999987 8999999999998 799999999999998763      224555  54443    1   


Q ss_pred             hCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013          111 FFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus       111 ~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +++|++|+.++|++++|.||++|||+++.+
T Consensus       165 ~~~p~~~l~VGD~~~Di~aA~~aG~~~i~v  194 (228)
T d2hcfa1         165 NYSPSQIVIIGDTEHDIRCARELDARSIAV  194 (228)
T ss_dssp             CCCGGGEEEEESSHHHHHHHHTTTCEEEEE
T ss_pred             CCChhHheeecCChHHHHHHHHcCCEEEEE
Confidence            578899999999999999999999998753

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=99.81  E-value=6.4e-20  Score=137.13  Aligned_cols=91  Identities=14%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      ..++|++.+.|++|+  ++.++++||++... +...++..++..+|+.+.      ..||+|  .+|..    .+++|++
T Consensus        92 ~~~~~~~~~~L~~l~--~~~~~v~s~~~~~~-~~~~~~~~~~~~~fd~v~~s~~~~~~KP~p--~~f~~a~~~lg~~p~e  166 (245)
T d1qq5a_          92 LTPYPDAAQCLAELA--PLKRAILSNGAPDM-LQALVANAGLTDSFDAVISVDAKRVFKPHP--DSYALVEEVLGVTPAE  166 (245)
T ss_dssp             CCBCTTHHHHHHHHT--TSEEEEEESSCHHH-HHHHHHHTTCGGGCSEEEEGGGGTCCTTSH--HHHHHHHHHHCCCGGG
T ss_pred             cccchhhhHHHHHHh--hhceeEEeccchHH-HHHHHhhcccccccccccccccccccCccH--HHHHHHHHHhCCChhh
Confidence            578899999999885  67899999999988 699999999999998762      337777  55554    6788899


Q ss_pred             eEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          117 FILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       117 ~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      |+.++|++++|.+|++|||+++-+.|
T Consensus       167 ~l~VgD~~~di~~A~~aG~~tv~v~r  192 (245)
T d1qq5a_         167 VLFVSSNGFDVGGAKNFGFSVARVAR  192 (245)
T ss_dssp             EEEEESCHHHHHHHHHHTCEEEEECC
T ss_pred             EEEEeCCHHHHHHHHHcCCeEEEEcC
Confidence            99999999999999999999987654

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.8e-20  Score=138.61  Aligned_cols=89  Identities=15%  Similarity=0.165  Sum_probs=75.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      ..++|++.++|+.|+ +|++++++||++... ....++.+|+..||+.+.      ..||+|  .+|..    .++.|++
T Consensus       108 ~~~~~~~~~~L~~L~-~~~~l~i~Tn~~~~~-~~~~l~~~gl~~~fd~i~~s~~~~~~KP~p--~~~~~~~~~~~~~~~~  183 (247)
T d2gfha1         108 MILADDVKAMLTELR-KEVRLLLLTNGDRQT-QREKIEACACQSYFDAIVIGGEQKEEKPAP--SIFYHCCDLLGVQPGD  183 (247)
T ss_dssp             CCCCHHHHHHHHHHH-TTSEEEEEECSCHHH-HHHHHHHHTCGGGCSEEEEGGGSSSCTTCH--HHHHHHHHHHTCCGGG
T ss_pred             CccCccHHHHHHHhh-cccceEEeecccchh-hhhhhhhccccccccccccccccccchhhh--hhHHHHHHHhhcCHHh
Confidence            468899999999998 579999999999888 699999999999998752      347777  55554    6688899


Q ss_pred             eEEEeehH-hHHHHHHHhCCchhh
Q 032013          117 FILFVDLF-CFMYAAAYVGCDLYV  139 (149)
Q Consensus       117 ~l~~eDs~-~gi~aa~~ag~~~~~  139 (149)
                      |+.+.|++ ++|.+|++|||++++
T Consensus       184 ~l~iGD~~~~Di~~A~~~G~~~~~  207 (247)
T d2gfha1         184 CVMVGDTLETDIQGGLNAGLKATV  207 (247)
T ss_dssp             EEEEESCTTTHHHHHHHTTCSEEE
T ss_pred             cceeccChHhHHHHHHHcCCeEEE
Confidence            99999996 899999999999543

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=4.6e-20  Score=137.96  Aligned_cols=92  Identities=22%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhCCCcc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFFSISA  116 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~~  116 (149)
                      ..++||+.++|++|++ |++++++||++... ....++.+|+.++|+.+.      ..||+|  .+|..    .+++|++
T Consensus        99 ~~~~p~~~~~L~~l~~-~~~i~i~Sn~~~~~-~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~--~~~~~~~~~l~~~p~~  174 (230)
T d1x42a1          99 GELYPEVVEVLKSLKG-KYHVGMITDSDTEY-LMAHLDALGIKDLFDSITTSEEAGFFKPHP--RIFELALKKAGVKGEE  174 (230)
T ss_dssp             CCBCTTHHHHHHHHBT-TBEEEEEESSCHHH-HHHHHHHHTCGGGCSEEEEHHHHTBCTTSH--HHHHHHHHHHTCCGGG
T ss_pred             CcccccHHHHHHHhhc-cCceeeeecccccc-chhhhcccccccccccccccccccccchhh--HHHHHHHhhhcccccc
Confidence            4678999999999975 79999999999888 799999999999998773      347777  55554    6688899


Q ss_pred             eEEEeehH-hHHHHHHHhCCchhhhhh
Q 032013          117 FILFVDLF-CFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       117 ~l~~eDs~-~gi~aa~~ag~~~~~~~~  142 (149)
                      |+.++|++ +++++|+++|++++.+.|
T Consensus       175 ~l~vgD~~~~Di~~A~~~G~~~v~v~~  201 (230)
T d1x42a1         175 AVYVGDNPVKDCGGSKNLGMTSILLDR  201 (230)
T ss_dssp             EEEEESCTTTTHHHHHTTTCEEEEECT
T ss_pred             cceeecCcHhHHHHHHHcCCEEEEECC
Confidence            99999985 789999999999987654

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2e-19  Score=131.50  Aligned_cols=96  Identities=14%  Similarity=0.013  Sum_probs=74.3

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchH---HHHHHHHHcCCCCCcccc------cccCCChhHHHHHH--hhCCCc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPD---IAKTFLHKLGIHSMFVPM------VRLSCCIMCIIFFL--FFFSIS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~---i~~~~l~~~gl~~~f~~~------~~~~p~p~~~i~~~--~~~~~~  115 (149)
                      ..+.|++.++|++|+++|++++++||.....   .........++..+|+.+      ...||+|..+..+.  .+++|+
T Consensus        98 ~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~  177 (225)
T d1zd3a1          98 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPS  177 (225)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGG
T ss_pred             CCCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChHhhccEEEeccccccchhHHHHHHHHhhhcccCcc
Confidence            4688999999999999999999999876542   123344455677777765      24577774433333  668889


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|++++|++.+|++|+++||+++.+.+
T Consensus       178 e~l~VgD~~~Di~~A~~~G~~ti~v~~  204 (225)
T d1zd3a1         178 EVVFLDDIGANLKPARDLGMVTILVQD  204 (225)
T ss_dssp             GEEEEESCHHHHHHHHHTTCEEEECSS
T ss_pred             ceeEEecCHHHHHHHHHcCCEEEEECC
Confidence            999999999999999999999998754

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.76  E-value=2.2e-19  Score=133.01  Aligned_cols=91  Identities=18%  Similarity=0.139  Sum_probs=74.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc---------cccCCChhHHHHHH--hhCCCc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM---------VRLSCCIMCIIFFL--FFFSIS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~---------~~~~p~p~~~i~~~--~~~~~~  115 (149)
                      ..+.||+.++|++|+.   +.+++||+.... +...++.+++..+|+..         ...||+|..+..+.  .+++|+
T Consensus        84 ~~~~~g~~~~L~~l~~---~~~i~t~~~~~~-~~~~l~~~~l~~~f~~~~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~  159 (222)
T d2fdra1          84 VKIIDGVKFALSRLTT---PRCICSNSSSHR-LDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPD  159 (222)
T ss_dssp             CCBCTTHHHHHHHCCS---CEEEEESSCHHH-HHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGG
T ss_pred             cchhhhHHHHhhhccc---cceeeeecchhh-hhhhhcccccccccceeecccccccccccccCHHHHHHHHHhhCCCCc
Confidence            5788999999988754   568999999998 79999999999999864         12377774433333  668889


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      +|++++||+.+|++|++|||++|.+.
T Consensus       160 ~~l~vgDs~~dv~aA~~aG~~~i~v~  185 (222)
T d2fdra1         160 RVVVVEDSVHGIHGARAAGMRVIGFT  185 (222)
T ss_dssp             GEEEEESSHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEEcCCHHHHHHHHHcCCEEEEEc
Confidence            99999999999999999999998764

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.2e-19  Score=131.46  Aligned_cols=93  Identities=11%  Similarity=0.025  Sum_probs=76.1

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCc----hHHHHHHHHHcCCCCCccccc------ccCCChhHHHHHH----hhC
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPA----PDIAKTFLHKLGIHSMFVPMV------RLSCCIMCIIFFL----FFF  112 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~----~~i~~~~l~~~gl~~~f~~~~------~~~p~p~~~i~~~----~~~  112 (149)
                      ..+.|++.++|++|+++|++++++||+..    .. ....+...++.+||+.+.      ..||+|  .+|..    .++
T Consensus        96 ~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~-~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p--~~~~~~~~~~~v  172 (222)
T d1cr6a1          96 RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKR-DSLAQMMCELSQHFDFLIESCQVGMIKPEP--QIYNFLLDTLKA  172 (222)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSH-HHHHHHHHHHGGGCSEEEEHHHHSCCTTCH--HHHHHHHHHHTS
T ss_pred             CCCCccHHHHHHHHHhcCCceEEeeccccccHHHH-HHHHHHhcChHhhhceeeehhhccCCCCCh--HHHHHHHHHhCC
Confidence            46789999999999999999999998543    33 456667788888888762      347777  66665    568


Q ss_pred             CCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          113 SISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       113 ~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      .|++|+.++|+..+|++|++|||+++.+.+
T Consensus       173 ~p~~~l~IgD~~~Di~~A~~aG~~ti~V~~  202 (222)
T d1cr6a1         173 KPNEVVFLDDFGSNLKPARDMGMVTILVHN  202 (222)
T ss_dssp             CTTSEEEEESSSTTTHHHHHHTCEEEECCS
T ss_pred             CcceEEEEECCHHHHHHHHHcCCEEEEECC
Confidence            999999999999999999999999988754

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=8.3e-19  Score=127.18  Aligned_cols=119  Identities=13%  Similarity=0.053  Sum_probs=85.6

Q ss_pred             cEEEEecCCcccccccc--ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHH
Q 032013           23 RLVVFDLDYTLWPFYCE--CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHK   85 (149)
Q Consensus        23 k~vifDlDGTLld~~~~--~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~   85 (149)
                      |+++||.||||+.....  .....+...++||+.++|+.|+++|++++++||.+.               .. ....++.
T Consensus         3 K~i~~D~DGtL~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~-l~~~l~~   81 (161)
T d2fpwa1           3 KYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNL-MMQIFTS   81 (161)
T ss_dssp             EEEEECCBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHH-HHHHHHH
T ss_pred             cEEEEeCCCCeEeeCCCCCccCCHHHceECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhh-hhhhccc
Confidence            78999999999984221  112234468999999999999999999999999751               12 2445566


Q ss_pred             cCCCC---Ccccc------cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013           86 LGIHS---MFVPM------VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus        86 ~gl~~---~f~~~------~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      .|+..   +|...      ...||+|.....+.  .+++|++|+.+-|+..+|++|++|||+.+.+.+
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~~~id~~~~~~IGD~~~Di~aA~~aG~~~i~i~~  149 (161)
T d2fpwa1          82 QGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDR  149 (161)
T ss_dssp             TTCCEEEEEEECCCGGGCCSSSTTSSGGGGGGC----CCGGGCEEEESSHHHHHHHHHHTSEEEECBT
T ss_pred             cccccceeeeccccccccccccccccHHHHHHHHhcCCChhcEEEECCCHHHHHHHHHcCCeEEEECC
Confidence            66532   23221      23488885554444  668889999999999999999999999998753

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.5e-19  Score=129.09  Aligned_cols=93  Identities=20%  Similarity=0.126  Sum_probs=75.1

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHc-CCCCCccccc------ccCCChhHHHHHH----hhCCCc
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-GIHSMFVPMV------RLSCCIMCIIFFL----FFFSIS  115 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~-gl~~~f~~~~------~~~p~p~~~i~~~----~~~~~~  115 (149)
                      ..+.+++.++++.++.+|++++++||++... ....+... ++..+|+.+.      ..||+|  .+|..    .+++|+
T Consensus        83 ~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~-~~~~~~~~~~l~~~fd~v~~s~~~~~~Kp~~--~~~~~~~~~~~~~~~  159 (197)
T d2b0ca1          83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEIRDAADHIYLSQDLGMRKPEA--RIYQHVLQAEGFSPS  159 (197)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCCCCT-TSCCGGGCHHHHHHCSEEEEHHHHTCCTTCH--HHHHHHHHHHTCCGG
T ss_pred             cccCchhHHHHHHHHhcCCeEEEEeCccHHH-HHHHHHHcccchhhccceeecccccccccch--HHHHHHHHhcCCCCC
Confidence            5688999999999999999999999998776 45555554 6666776552      336666  55554    668889


Q ss_pred             ceEEEeehHhHHHHHHHhCCchhhhhh
Q 032013          116 AFILFVDLFCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       116 ~~l~~eDs~~gi~aa~~ag~~~~~~~~  142 (149)
                      +|++++||+++|++|++||++++.+.+
T Consensus       160 ~~l~vgDs~~di~~A~~aG~~ti~v~~  186 (197)
T d2b0ca1         160 DTVFFDDNADNIEGANQLGITSILVKD  186 (197)
T ss_dssp             GEEEEESCHHHHHHHHTTTCEEEECCS
T ss_pred             eEEEEeCCHHHHHHHHHcCCEEEEECC
Confidence            999999999999999999999998754

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=99.71  E-value=1.9e-17  Score=124.52  Aligned_cols=120  Identities=13%  Similarity=-0.004  Sum_probs=85.5

Q ss_pred             CCCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHH
Q 032013           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFL   83 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l   83 (149)
                      ++.+++++||.||||.....+ ....+...++||+.++|++|+++|++++|+||.+.               .. ....+
T Consensus        20 p~~~~Aif~DrDGtl~~~~~y-~~~~~~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~-~~~~l   97 (209)
T d2o2xa1          20 PPHLPALFLDRDGTINVDTDY-PSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGR-VLELL   97 (209)
T ss_dssp             CSSCCCEEECSBTTTBCCCSC-TTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHH-HHHHH
T ss_pred             CCCCCEEEEeCCCCeECCCCC-CCCHHHeEecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhH-HHHHh
Confidence            445678999999999874222 22334568999999999999999999999999541               12 23344


Q ss_pred             HHcCCC--CCcccc--------------cccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCchhhh
Q 032013           84 HKLGIH--SMFVPM--------------VRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        84 ~~~gl~--~~f~~~--------------~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      +..|+.  ..+...              ...||+|.....+.  .++++++|+.+=|+.++|++|++|||.++.+
T Consensus        98 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~rKP~p~ml~~a~~~~~i~~~~~~~VGD~~~Di~aA~~AGi~~i~v  172 (209)
T d2o2xa1          98 REEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWL  172 (209)
T ss_dssp             HHTTCCCSEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHHTCCGGGCEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             hhcccccceEEEecccccccccccccccccccccchhhhHhHHHhCCCccceEEeCCCHHHHHHHHHCCCcEEEE
Confidence            555532  111111              12388886555554  5677899999999999999999999988754

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.3e-16  Score=116.66  Aligned_cols=114  Identities=12%  Similarity=-0.037  Sum_probs=82.4

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCch---------------HHHHHHHHHc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---------------DIAKTFLHKL   86 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~---------------~i~~~~l~~~   86 (149)
                      +++|+||+||||..-..+. ...+..+++||+.++|++|+++|++++++||.+.-               . ....+...
T Consensus         2 ~~Av~~DrDGtl~~~~~y~-~~~~~~~~~~gv~e~l~~L~~~g~~~~ivTNq~~i~~~~~~~~~~~~~~~~-~~~~~~~~   79 (182)
T d2gmwa1           2 VPAIFLDRDGTINVDHGYV-HEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEW-MDWSLADR   79 (182)
T ss_dssp             BCEEEECSBTTTBCCCSSC-CSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHH-HHHHHHHT
T ss_pred             CCEEEEeCCCCccCCCCCC-CCHHHeeECCCHHHHHHHHhhcCchhhhhhccchhhhhhhHHHhhhhhhhh-hhhhhhhh
Confidence            7899999999998643322 23345789999999999999999999999998731               1 12223333


Q ss_pred             CCCC--Cc-c-------------cccccCCChhHHHHHH--hhCCCcceEEEeehHhHHHHHHHhCCch
Q 032013           87 GIHS--MF-V-------------PMVRLSCCIMCIIFFL--FFFSISAFILFVDLFCFMYAAAYVGCDL  137 (149)
Q Consensus        87 gl~~--~f-~-------------~~~~~~p~p~~~i~~~--~~~~~~~~l~~eDs~~gi~aa~~ag~~~  137 (149)
                      ++..  .+ .             .....||+|.....+.  .++++++|+.+-||...|+||++|||.+
T Consensus        80 ~~~~~~~~~cp~~p~~~~~~~~~~~~~rKP~p~m~~~~~~~~~i~~~~s~mVGDs~~Di~aA~~Ag~~~  148 (182)
T d2gmwa1          80 DVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGT  148 (182)
T ss_dssp             TCCCSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSE
T ss_pred             cccccceeecccccccccccccccccccCCccccccchhhhcccccccccccCCCHHHHHHHHHhCCCc
Confidence            3321  11 0             0123499997766665  5577799999999999999999999976

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.65  E-value=2.7e-16  Score=110.26  Aligned_cols=121  Identities=14%  Similarity=0.083  Sum_probs=76.9

Q ss_pred             CCCccEEEEecCCcccccccc----ccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcC-----
Q 032013           19 ENLPRLVVFDLDYTLWPFYCE----CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLG-----   87 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~----~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~g-----   87 (149)
                      +.+|++|+||+||||+++...    |.. -....++|++.++|+.|+++|++++++||++....  +...++..+     
T Consensus         4 ~~kpk~vifDiDgTL~~~~~~~~~~~~~-~~~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~~~~~~t~~~l~~~~~~~~~   82 (149)
T d1ltqa1           4 PGKPKAVIFDVDGTLAKMNGRGPYDLEK-CDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVED   82 (149)
T ss_dssp             TTSCEEEEEETBTTTBCCSSCCTTCGGG-GGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCcEeCCCCCcCCccc-cccCccCHHHHHHHHHHHhccCeEEEEecCcHHHHHHHHHHHHHHhhhhhh
Confidence            456899999999999985322    111 12246899999999999999999999999973210  233333221     


Q ss_pred             C-CCCcccc-----cccCCChhH--HHHHHhhCCC-cceEEEeehHhHHHHHHHhCCchhhh
Q 032013           88 I-HSMFVPM-----VRLSCCIMC--IIFFLFFFSI-SAFILFVDLFCFMYAAAYVGCDLYVY  140 (149)
Q Consensus        88 l-~~~f~~~-----~~~~p~p~~--~i~~~~~~~~-~~~l~~eDs~~gi~aa~~ag~~~~~~  140 (149)
                      + ..++...     ....|++..  .++....... +.+++|+|++..|+||+++|++++-+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~d~~~k~~~l~~~~~~~~~i~~~igD~~~dv~a~~~~Gi~~~~V  144 (149)
T d1ltqa1          83 IAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQV  144 (149)
T ss_dssp             TTCCCCSEEEECCTTCCSCHHHHHHHHHHHHTTTTCEEEEEEECCHHHHHHHHHTTCCEEEC
T ss_pred             cCCCcEEEeecccccccCCchHHHHHHHHHhccCCCceEEEEcCCHHHHHHHHHCCCcEEEe
Confidence            1 0111111     111232211  2222233333 45689999999999999999998754

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.7e-15  Score=110.72  Aligned_cols=80  Identities=18%  Similarity=0.047  Sum_probs=58.7

Q ss_pred             HCCceEEEEeCCCchHHHHHH-----------HHHcCCCCCccccc-----ccCCChhHHHHHH--hhCCCcceEEEeeh
Q 032013           62 EKGIHVAVASRSPAPDIAKTF-----------LHKLGIHSMFVPMV-----RLSCCIMCIIFFL--FFFSISAFILFVDL  123 (149)
Q Consensus        62 ~~Gi~i~IaT~~~~~~i~~~~-----------l~~~gl~~~f~~~~-----~~~p~p~~~i~~~--~~~~~~~~l~~eDs  123 (149)
                      ..+...++.|+..... ....           ++.+++..+|+.+.     ..||+|.++....  .+++|++|+.++|+
T Consensus       107 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~Fd~v~~~~~~~~KP~p~~f~~~~~~lg~~p~e~l~VgD~  185 (225)
T d2g80a1         107 KRKKRVFIYSSGSVKA-QKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTSGKKTETQSYANILRDIGAKASEVLFLSDN  185 (225)
T ss_dssp             HHCSCEEEECSSCHHH-HHHHHHSBCCTTCTTSCCBCCGGGCCEEECHHHHCCTTCHHHHHHHHHHHTCCGGGEEEEESC
T ss_pred             hhHHhhhhhhhccchh-hhhhhhhhhhhHHHHHHhcCCccccceeeeccccCCCCChhHhHHHHHhcccCchhceeecCC
Confidence            3457788888876544 2222           34567778887652     3477774444433  67889999999999


Q ss_pred             HhHHHHHHHhCCchhhhhh
Q 032013          124 FCFMYAAAYVGCDLYVYKR  142 (149)
Q Consensus       124 ~~gi~aa~~ag~~~~~~~~  142 (149)
                      ..+|.+|++|||+++.+.|
T Consensus       186 ~~Dv~~A~~aG~~ti~v~r  204 (225)
T d2g80a1         186 PLELDAAAGVGIATGLASR  204 (225)
T ss_dssp             HHHHHHHHTTTCEEEEECC
T ss_pred             HHHHHHHHHcCCEEEEEeC
Confidence            9999999999999998765

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1.1e-15  Score=113.18  Aligned_cols=89  Identities=12%  Similarity=-0.016  Sum_probs=71.9

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc-------------------cccCCChhH--
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM-------------------VRLSCCIMC--  104 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~-------------------~~~~p~p~~--  104 (149)
                      ..++.||+.+++++|+++|++++++||+.+.. ++.+++++++.++|.+.                   ...+++|.+  
T Consensus        73 ~~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~-i~~~l~~l~~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  151 (226)
T d2feaa1          73 DAKIREGFREFVAFINEHEIPFYVISGGMDFF-VYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKP  151 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHTTTSCGGGEEEEEEECSSSBCEEECTTCCCTTCCSCCSSCHH
T ss_pred             ccchhHHHHHHHHHHHhcccccccCCcchhhh-HHHHHHHcCCccceeeeeEEEeCCcceeccccccccccccCCHHHHH
Confidence            35799999999999999999999999999998 79999999988876431                   011334433  


Q ss_pred             HHHHHhhCCCcceEEEeehHhHHHHHHHhCC
Q 032013          105 IIFFLFFFSISAFILFVDLFCFMYAAAYVGC  135 (149)
Q Consensus       105 ~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~  135 (149)
                      .+.-..++++++|+.+-||.+++.+|++||.
T Consensus       152 ~~~~~~~~~~~~~i~iGDs~~Dl~~a~~A~~  182 (226)
T d2feaa1         152 SVIHELSEPNQYIIMIGDSVTDVEAAKLSDL  182 (226)
T ss_dssp             HHHHHHCCTTCEEEEEECCGGGHHHHHTCSE
T ss_pred             HHHHHhcCCCceEEEEeCchhhHHHHHHCCE
Confidence            3333477888999999999999999999996

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-15  Score=113.40  Aligned_cols=93  Identities=17%  Similarity=0.047  Sum_probs=71.2

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc------cc------cccCCChhHH--------
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV------PM------VRLSCCIMCI--------  105 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~------~~------~~~~p~p~~~--------  105 (149)
                      ...++||+.+++++|+++|++++|+||+.... ++.+++.+|++.+..      ..      ....+.|...        
T Consensus        80 ~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~-v~~i~~~lgi~~~~v~an~~~~~~~G~~~g~~~~~p~~~~~~K~~~v  158 (217)
T d1nnla_          80 PPHLTPGIRELVSRLQERNVQVFLISGGFRSI-VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVI  158 (217)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHHHHH
T ss_pred             ccccCHHHHHHHHHHHhCCCEEEEECCCchHH-HHHHHHHhCCcccceeeeeeeeeehhccccceeeeeeeccchHHHHH
Confidence            35688999999999999999999999999888 799999999975321      11      0123444221        


Q ss_pred             HHHHhhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          106 IFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       106 i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      -.+..+.++++|+++.||.+++.++++||..+-+
T Consensus       159 ~~~~~~~~~~~~~~vGDs~~Di~~~~~ag~~va~  192 (217)
T d1nnla_         159 KLLKEKFHFKKIIMIGDGATDMEACPPADAFIGF  192 (217)
T ss_dssp             HHHHHHHCCSCEEEEESSHHHHTTTTTSSEEEEE
T ss_pred             HHHHhccCccccEEEEeCHhhHHHHHhCCceEEE
Confidence            1223457889999999999999999999976543

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=6e-14  Score=106.22  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=38.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~   74 (149)
                      +|+|+||+||||+++      .    .+.|++.++|+.|+++|++++++||++
T Consensus         3 ik~VifDlDGTL~~~------~----~~i~~a~e~i~~l~~~g~~~~~~TN~~   45 (250)
T d2c4na1           3 IKNVICDIDGVLMHD------N----VAVPGAAEFLHGIMDKGLPLVLLTNYP   45 (250)
T ss_dssp             CCEEEEECBTTTEET------T----EECTTHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCEEEEECCCeeEEC------C----CcCccHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999973      1    466899999999999999999999765

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=3.2e-13  Score=102.26  Aligned_cols=45  Identities=27%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~   74 (149)
                      ..+++++||+||||+++          ....|++.++|++|+++|+++.++||+.
T Consensus         5 ~~ik~vlFDlDGTL~~~----------~~~i~~a~e~l~~l~~~g~~~~~~TN~~   49 (261)
T d1vjra_           5 DKIELFILDMDGTFYLD----------DSLLPGSLEFLETLKEKNKRFVFFTNNS   49 (261)
T ss_dssp             GGCCEEEECCBTTTEET----------TEECTTHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HhCCEEEEeCCCeeEEC----------CccCchHHHHHHHHHHcCCCEEEEeCCC
Confidence            45899999999999984          1466899999999999999999999864

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=7.1e-14  Score=100.71  Aligned_cols=92  Identities=16%  Similarity=0.039  Sum_probs=71.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc--------------cc--CCChhHHHHHH-
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV--------------RL--SCCIMCIIFFL-  109 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~--------------~~--~p~p~~~i~~~-  109 (149)
                      ..+.+++.+.++.++.+|..++++|++.... +....+..+...++....              ..  .+.+....... 
T Consensus        74 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
T d1j97a_          74 ITPTEGAEETIKELKNRGYVVAVVSGGFDIA-VNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAK  152 (210)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEeeccccccc-ccchhhccchhhhhhhhhccccccccccccccccccccccchhhhHHH
Confidence            5788999999999999999999999998887 688888888877665431              11  22222222222 


Q ss_pred             -hhCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          110 -FFFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       110 -~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                       .+.+++++++|.||.|++.++++||+.+.+
T Consensus       153 ~~~~~~~~~i~iGDs~nDi~m~~~ag~~va~  183 (210)
T d1j97a_         153 IEGINLEDTVAVGDGANDISMFKKAGLKIAF  183 (210)
T ss_dssp             HHTCCGGGEEEEESSGGGHHHHHHCSEEEEE
T ss_pred             HhcccccceEEecCCcChHHHHHHCCCCEEE
Confidence             567889999999999999999999987644

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.40  E-value=6.2e-13  Score=100.47  Aligned_cols=44  Identities=23%  Similarity=0.262  Sum_probs=38.0

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~   75 (149)
                      .++|+||+||||+++      .    ...|++.++|++|+++|++++++||++.
T Consensus         2 yk~v~fDlDGTL~~~------~----~~i~~a~~~i~~l~~~g~~~~~~Tn~s~   45 (253)
T d1yv9a1           2 YQGYLIDLDGTIYLG------K----EPIPAGKRFVERLQEKDLPFLFVTNNTT   45 (253)
T ss_dssp             CCEEEECCBTTTEET------T----EECHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCEEEEcCCCccEeC------C----CcCccHHHHHHHHHHCCCCEEEEeCCCC
Confidence            478999999999983      1    3568999999999999999999998663

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=99.39  E-value=6.6e-13  Score=100.54  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=38.3

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~   75 (149)
                      .|+|+||+||||+++          ..+.|++.++++.|+++|++++++||++.
T Consensus         2 yk~vlFDlDGTL~~~----------~~~i~~a~e~l~~l~~~g~~~~~~TN~s~   45 (253)
T d1wvia_           2 YKGYLIDLDGTIYKG----------KDRIPAGEDFVKRLQERQLPYILVTNNTT   45 (253)
T ss_dssp             CCEEEEECBTTTEET----------TEECHHHHHHHHHHHHHTCCEEEEECCCS
T ss_pred             cCEEEEcCcCceEEC----------CCcCccHHHHHHHHHHCCCCEEEEeCCCC
Confidence            588999999999973          13679999999999999999999998643

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.28  E-value=4.1e-12  Score=102.22  Aligned_cols=91  Identities=16%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             ccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc-------------------ccCCChhHHHHH
Q 032013           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-------------------RLSCCIMCIIFF  108 (149)
Q Consensus        48 ~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~-------------------~~~p~p~~~i~~  108 (149)
                      ++.||+.++|++|+++|++++++||+++.. ++..++++|+.++|+...                   ..||+|....-.
T Consensus       215 ~p~~~v~~~l~~lk~aGi~v~i~Tg~~~~~-a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~  293 (380)
T d1qyia_         215 RPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAA  293 (380)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHH
T ss_pred             cchhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcccCCcceEEecchhhhhhhhccccccccCCChHHHHHH
Confidence            466799999999999999999999999999 899999999999987532                   347888443333


Q ss_pred             Hh----------------hCCCcceEEEeehHhHHHHHHHhCCchhh
Q 032013          109 LF----------------FFSISAFILFVDLFCFMYAAAYVGCDLYV  139 (149)
Q Consensus       109 ~~----------------~~~~~~~l~~eDs~~gi~aa~~ag~~~~~  139 (149)
                      ..                +.++++|+++.|+.|++.||++|||++|-
T Consensus       294 ~~~~~~~~~~k~~iv~~~~~~~~~~~~vGD~~~D~~aak~Ag~~~Ig  340 (380)
T d1qyia_         294 LYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIG  340 (380)
T ss_dssp             HHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEE
T ss_pred             HHHcCCCHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHCCCCEEE
Confidence            21                24568899999999999999999988764

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=4.1e-11  Score=87.26  Aligned_cols=61  Identities=13%  Similarity=0.091  Sum_probs=51.3

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      ++|+++||+||||++.      ..   .+.+.+.++|++|+++|++++++||++... +...+...++..+
T Consensus         1 kiK~i~~D~DGTL~~~------~~---~i~~~~~~~l~~l~~~gi~v~~~TGR~~~~-~~~~~~~~~~~~~   61 (230)
T d1wr8a_           1 KIKAISIDIDGTITYP------NR---MIHEKALEAIRRAESLGIPIMLVTGNTVQF-AEAASILIGTSGP   61 (230)
T ss_dssp             CCCEEEEESTTTTBCT------TS---CBCHHHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHHTCCSC
T ss_pred             CceEEEEecCCCCcCC------CC---ccCHHHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHhcCCCcc
Confidence            3789999999999972      22   477899999999999999999999999888 6888877776543

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.18  E-value=1.9e-11  Score=92.36  Aligned_cols=64  Identities=23%  Similarity=0.345  Sum_probs=55.3

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      ||+|+||+||||++      +++   .+.+.+.++|++|+++|++++++|||+... +...++.+++..++...
T Consensus         1 iKli~~DlDGTLl~------~~~---~i~~~~~~~l~~l~~~Gi~~~i~TGR~~~~-~~~~~~~l~~~~~~i~~   64 (285)
T d1nrwa_           1 MKLIAIDLDGTLLN------SKH---QVSLENENALRQAQRDGIEVVVSTGRAHFD-VMSIFEPLGIKTWVISA   64 (285)
T ss_dssp             CCEEEEECCCCCSC------TTS---CCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHGGGTCCCEEEEG
T ss_pred             CeEEEEECCccccC------CCC---ccCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhCCCcEEEec
Confidence            58899999999997      232   467899999999999999999999999999 79999999988765544

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=1.7e-11  Score=90.16  Aligned_cols=64  Identities=27%  Similarity=0.389  Sum_probs=54.3

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCccccc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~   96 (149)
                      |+|++++|+||||++.      .     ..+.+.++|++|+++|++++++|||+... +..+++.+++..++...+
T Consensus         1 miKli~~DlDGTLl~~------~-----~~~~~~~ai~~l~~~G~~~~~aTGR~~~~-~~~~~~~~~~~~~~i~~n   64 (243)
T d1wzca1           1 MIRLIFLDIDKTLIPG------Y-----EPDPAKPIIEELKDMGFEIIFNSSKTRAE-QEYYRKELEVETPFISEN   64 (243)
T ss_dssp             CEEEEEECCBTTTBSS------S-----CSGGGHHHHHHHHHTTEEEEEECSSCHHH-HHHHHHHHTCCSCEEETT
T ss_pred             CcEEEEEeCCCCCCCC------C-----CCHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHhcccccccccC
Confidence            5899999999999973      1     12567899999999999999999999999 799999999987665543

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=5.3e-11  Score=86.63  Aligned_cols=60  Identities=28%  Similarity=0.365  Sum_probs=52.1

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      .|-+|++|+||||++      +++   .+.+.+.++|++|+++|++++++|||+... +...++.+++..
T Consensus         3 ~~~li~~DlDGTLl~------~~~---~i~~~~~~al~~l~~~Gi~~~i~TGR~~~~-~~~~~~~~~~~~   62 (232)
T d1xvia_           3 QPLLVFSDLDGTLLD------SHS---YDWQPAAPWLTRLREANVPVILCSSKTSAE-MLYLQKTLGLQG   62 (232)
T ss_dssp             CCEEEEEECTTTTSC------SSC---CSCCTTHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHTTCTT
T ss_pred             CCEEEEEECCCCccC------CcC---cCCHHHHHHHHHHHHCCCEEEEEeCCChhh-chhHHHHhccCC
Confidence            466899999999997      232   467889999999999999999999999999 799999999864

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=5.6e-11  Score=89.29  Aligned_cols=60  Identities=22%  Similarity=0.422  Sum_probs=52.8

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~   91 (149)
                      +|+|+||+||||++.      ++   .+.|.+.++|++|+++|++++++|||+... +...++.+++...
T Consensus         4 iKli~~DlDGTL~~~------~~---~i~~~~~~al~~L~~~gi~v~i~TGR~~~~-~~~~~~~l~l~~~   63 (271)
T d1rkqa_           4 IKLIAIDMDGTLLLP------DH---TISPAVKNAIAAARARGVNVVLTTGRPYAG-VHNYLKELHMEQP   63 (271)
T ss_dssp             CCEEEECCCCCCSCT------TS---CCCHHHHHHHHHHHHTTCEEEEECSSCGGG-THHHHHHTTCCST
T ss_pred             eeEEEEeCCccccCC------CC---ccCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhcCcCC
Confidence            899999999999972      32   467899999999999999999999999999 6899999988654

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.05  E-value=1.1e-10  Score=86.05  Aligned_cols=63  Identities=22%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~   93 (149)
                      |+|+++||+||||++.      ..   .+.+++.++|++|+++|++++++||++... +..+.+.+++..++.
T Consensus         2 miKli~~D~DGTL~~~------~~---~i~~~~~~al~~l~~~g~~v~~~TGr~~~~-~~~~~~~~~~~~~~i   64 (225)
T d1l6ra_           2 MIRLAAIDVDGNLTDR------DR---LISTKAIESIRSAEKKGLTVSLLSGNVIPV-VYALKIFLGINGPVF   64 (225)
T ss_dssp             CCCEEEEEHHHHSBCT------TS---CBCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCCSCEE
T ss_pred             CeEEEEEecCCCCcCC------CC---cCCHHHHHHHHHHHHCCCEEEEEcCCchhh-hHHHHHHcCCCceEE
Confidence            6899999999999983      22   477899999999999999999999999887 688888888876544

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=4.6e-11  Score=89.81  Aligned_cols=65  Identities=26%  Similarity=0.309  Sum_probs=53.2

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~   95 (149)
                      ||+++||+||||++.      .++  ...|.+.++|++|+++|++++++|||+... +...++.+++..++...
T Consensus         2 IKli~~DlDGTLl~~------~~~--~~~~~~~~~l~~l~~~gi~~~i~TGR~~~~-~~~~~~~l~~~~~~i~~   66 (269)
T d1rlma_           2 VKVIVTDMDGTFLND------AKT--YNQPRFMAQYQELKKRGIKFVVASGNQYYQ-LISFFPELKDEISFVAE   66 (269)
T ss_dssp             CCEEEECCCCCCSCT------TSC--CCHHHHHHHHHHHHHHTCEEEEECSSCHHH-HGGGCTTTTTTSEEEEG
T ss_pred             EEEEEEeCCccCcCC------CCc--CChHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCcccceEee
Confidence            789999999999972      221  234678999999999999999999999988 68888888887665443

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=98.99  E-value=1.8e-10  Score=86.43  Aligned_cols=59  Identities=15%  Similarity=0.129  Sum_probs=49.4

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      ..+|+|+||+||||+..     ++   ..+.|.+.++|++|+++|++++++|||+... +...++.++
T Consensus         8 ~~ikli~~DlDGTLl~~-----~~---~~i~~~~~~al~~l~~~Gi~v~i~TGR~~~~-~~~~~~~l~   66 (283)
T d2b30a1           8 ADIKLLLIDFDGTLFVD-----KD---IKVPSENIDAIKEAIEKGYMVSICTGRSKVG-ILSAFGEEN   66 (283)
T ss_dssp             CCCCEEEEETBTTTBCC-----TT---TCSCHHHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHCHHH
T ss_pred             cCccEEEEECCCCCcCC-----CC---CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhC
Confidence            45899999999999852     22   2577899999999999999999999999988 677776654

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=4.3e-09  Score=77.63  Aligned_cols=117  Identities=20%  Similarity=0.148  Sum_probs=79.8

Q ss_pred             ccEEEEecCCcccccc---ccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCC--------chH---HHHHHHHHcC
Q 032013           22 PRLVVFDLDYTLWPFY---CECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--------APD---IAKTFLHKLG   87 (149)
Q Consensus        22 ~k~vifDlDGTLld~~---~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~--------~~~---i~~~~l~~~g   87 (149)
                      -|.++||.||||+...   .+.........+.|++.+.|+.|+++|+.++|+||.+        .+.   ....+++.++
T Consensus        21 ~Kia~fDrDGtLik~~~~~~~~~~~~d~~~l~~~v~~~i~~L~~~gy~iiIvTNQ~gI~rg~~s~~~~~~~~~~i~~~l~  100 (195)
T d1yj5a1          21 GKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLG  100 (195)
T ss_dssp             SCEEEECSBTTTEECSSSCSSCSSTTCCEESCTTHHHHHHHHHHHTCEEEEEEECHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCceEeeCCCCcCCCChhhceeccCCHHHHHHHHHhCCcEEEEecCcchhccCCcCHHHHHHHHHHHHHHcC
Confidence            5789999999998631   1111111112347999999999999999999999964        222   1355666776


Q ss_pred             CCCC-cccc---cccCCChhHHHHHHhh------CCCcceEEEeeh-----------------HhHHHHHHHhCCchh
Q 032013           88 IHSM-FVPM---VRLSCCIMCIIFFLFF------FSISAFILFVDL-----------------FCFMYAAAYVGCDLY  138 (149)
Q Consensus        88 l~~~-f~~~---~~~~p~p~~~i~~~~~------~~~~~~l~~eDs-----------------~~gi~aa~~ag~~~~  138 (149)
                      .... +.+.   ..-||.|.-..++...      ++.++|..+=|.                 -.+++.|.++|++-+
T Consensus       101 ~~~~i~~~~~~~~~RKP~~GM~~~~~~~~n~~~~id~~~S~~IGD~~gr~~~~~~~~~~~D~S~sD~~fA~N~gikF~  178 (195)
T d1yj5a1         101 VPFQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFA  178 (195)
T ss_dssp             SCCEEEEECSSSSSSTTSTHHHHHHHHTSSSSCCCCGGGCEEECSCCCBCTTSBTTBCSCCSCCHHHHHHHHHTCCEE
T ss_pred             CCccEEEecCccccCCCccHHHHHHHHHhcccccCCcCceEEEeCccCccccccccccccCcchhHHHHHHHCCCccc
Confidence            6431 2221   3559999666666543      445889988894                 499999999999843

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.88  E-value=5.8e-10  Score=83.69  Aligned_cols=63  Identities=22%  Similarity=0.349  Sum_probs=47.0

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH--HcCCCCCccc
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVP   94 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~--~~gl~~~f~~   94 (149)
                      |+|+||+||||+++      +.  ..+.+.+.++|++|+++|++++++|||+... +..+.+  ..+...++.+
T Consensus         2 k~if~DlDGTL~~~------~~--~~i~~~~~~al~~l~~~gi~v~~~TGR~~~~-~~~l~~~~~~~~~~~~I~   66 (260)
T d2rbka1           2 KALFFDIDGTLVSF------ET--HRIPSSTIEALEAAHAKGLKIFIATGRPKAI-INNLSELQDRNLIDGYIT   66 (260)
T ss_dssp             CEEEECSBTTTBCT------TT--SSCCHHHHHHHHHHHHTTCEEEEECSSCGGG-CCSCHHHHHTTCCCEEEE
T ss_pred             eEEEEECCCCCcCC------CC--CCCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHHhcCCCCceEe
Confidence            68999999999973      21  2466789999999999999999999999776 444333  3444444443

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=98.87  E-value=2.5e-09  Score=77.61  Aligned_cols=113  Identities=19%  Similarity=0.075  Sum_probs=84.4

Q ss_pred             CCccEEEEecCCccccccccccccCCCCccCccHH--HHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccc
Q 032013           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK--GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR   97 (149)
Q Consensus        20 ~~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~--e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~   97 (149)
                      +.+|+++||+||||+|+..++..+++..+-+ .+.  ..++.|++.|+.++++|+..... +....+.+++...+..   
T Consensus         3 ~~ik~~i~DvDGVlTDG~v~~~~dG~e~k~F-~~~Dg~gi~~l~~~gi~~~iis~~~~~~-v~~~~~~l~~~~~~~~---   77 (177)
T d1k1ea_           3 ENIKFVITDVDGVLTDGQLHYDANGEAIKSF-HVRDGLGIKMLMDADIQVAVLSGRDSPI-LRRRIADLGIKLFFLG---   77 (177)
T ss_dssp             GGCCEEEEECTTTTSCSEEEEETTEEEEEEE-EHHHHHHHHHHHHTTCEEEEEESCCCHH-HHHHHHHHTCCEEEES---
T ss_pred             ccCeEEEEccCCcccCCeEEEeCCCCEEEEE-ECcchHHHHHHhhhcEEEEEecCCchhH-HHHHHhhhcccccccc---
Confidence            4589999999999999877776655433333 232  45899999999999999999888 7899999987654332   


Q ss_pred             cCCChhH-HHHHH-hhCCCcceEEEeehHhHHHHHHHhCCch
Q 032013           98 LSCCIMC-IIFFL-FFFSISAFILFVDLFCFMYAAAYVGCDL  137 (149)
Q Consensus        98 ~~p~p~~-~i~~~-~~~~~~~~l~~eDs~~gi~aa~~ag~~~  137 (149)
                      ..+.... ..++. .++++++++.+=|..|.+..-..||..+
T Consensus        78 ~~~K~~~l~~~~~~~~i~~~~v~~vGDd~nDl~~l~~~g~si  119 (177)
T d1k1ea_          78 KLEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSF  119 (177)
T ss_dssp             CSCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEE
T ss_pred             cccHHHHHHHHHHHhcCCcceeEEecCCccHHHHHhhCCeEE
Confidence            2232222 22222 7799999999999999999999998543

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=9.7e-10  Score=79.93  Aligned_cols=53  Identities=25%  Similarity=0.256  Sum_probs=42.7

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHH
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~   84 (149)
                      .||+++||+||||++.      +.   .+.|.+.++|++|+++|+ ++++||++... ....+.
T Consensus         2 ~~kl~~fDlDGTLl~~------~~---~i~~~~~~al~~l~~~g~-~~i~Tgr~~~~-~~~~~~   54 (243)
T d2amya1           2 GPALCLFDVDGTLTAP------RQ---KITKEMDDFLQKLRQKIK-IGVVGGSDFEK-VQEQLG   54 (243)
T ss_dssp             CSEEEEEESBTTTBCT------TS---CCCHHHHHHHHHHTTTSE-EEEECSSCHHH-HHHHHC
T ss_pred             CCEEEEEcCcCCeeCC------CC---cCCHHHHHHHHHHHcCCC-EEEEcCCChHH-hHHHHh
Confidence            5899999999999972      22   578999999999999885 78999998776 444443

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=3.6e-09  Score=79.49  Aligned_cols=59  Identities=25%  Similarity=0.163  Sum_probs=48.5

Q ss_pred             CccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        21 ~~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      |+|+++||+||||++      +++   .+.|.+.++|+++++.| +++++|||+... +...+++.+...
T Consensus         1 m~Kli~~DlDGTL~~------~~~---~i~~~~~~al~~l~~~~-~~~i~TGR~~~~-~~~~~~~~~~~~   59 (267)
T d1nf2a_           1 MYRVFVFDLDGTLLN------DNL---EISEKDRRNIEKLSRKC-YVVFASGRMLVS-TLNVEKKYFKRT   59 (267)
T ss_dssp             CBCEEEEECCCCCSC------TTS---CCCHHHHHHHHHHTTTS-EEEEECSSCHHH-HHHHHHHHSSSC
T ss_pred             CeEEEEEeCCccccC------CcC---ccCHHHHHHHHHHHcCC-EEEEECCCChHH-HHHHHHHhcccC
Confidence            478999999999997      332   47789999999998755 799999999888 688888776544

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=98.78  E-value=1.1e-08  Score=70.39  Aligned_cols=73  Identities=14%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCc---------------hHHHHHHHHHcC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKLG   87 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~---------------~~i~~~~l~~~g   87 (149)
                      +.++||+||||.....   .+.....+.+++.+.++.|+++|+++++.|+|..               .. +...|+..|
T Consensus         2 K~i~~DiDGTI~~~~~---~~y~~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~-T~~wL~~~g   77 (124)
T d1xpja_           2 KKLIVDLDGTLTQANT---SDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPI-ITEWLDKHQ   77 (124)
T ss_dssp             CEEEECSTTTTBCCCC---SCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHH-HHHHHHHTT
T ss_pred             CEEEEeCCCCeECCCC---CCcCccCcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHH-HHHHHHHcC
Confidence            5699999999987422   1123457899999999999999999999999952               33 578889999


Q ss_pred             CCCCcccccccCCC
Q 032013           88 IHSMFVPMVRLSCC  101 (149)
Q Consensus        88 l~~~f~~~~~~~p~  101 (149)
                      +.  |+.....+|.
T Consensus        78 I~--Yd~Li~gKP~   89 (124)
T d1xpja_          78 VP--YDEILVGKPW   89 (124)
T ss_dssp             CC--CSEEEECCCC
T ss_pred             CC--ceEEEECCCC
Confidence            84  5665555664

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.73  E-value=1.2e-08  Score=69.90  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHH--HHHHHHHcCCC
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIH   89 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i--~~~~l~~~gl~   89 (149)
                      .+++|+||||..+     ...+..++.|++.+.|+.|+++|+.+++.|+|+....  ....|+..|+.
T Consensus         2 ti~vDiDGTl~~~-----~~~~~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~   64 (122)
T d2obba1           2 TIAVDFDGTIVEH-----RYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLE   64 (122)
T ss_dssp             EEEECCBTTTBCS-----CTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCC
T ss_pred             EEEEEcCCCcCCC-----CCCccccccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCC
Confidence            4899999999874     2233346899999999999999999999999975431  45667777764

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.65  E-value=1.3e-08  Score=73.32  Aligned_cols=49  Identities=22%  Similarity=0.356  Sum_probs=38.4

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~   77 (149)
                      +++||+||||+++.    ...+...+.|.+.++|++|+++ .+++|+|||+...
T Consensus         2 Li~~DlDGTL~~~~----~~~~~~~i~~~~~~~l~~l~~~-~~v~i~TGR~~~~   50 (229)
T d1u02a_           2 LIFLDYDGTLVPII----MNPEESYADAGLLSLISDLKER-FDTYIVTGRSPEE   50 (229)
T ss_dssp             EEEEECBTTTBCCC----SCGGGCCCCHHHHHHHHHHHHH-SEEEEECSSCHHH
T ss_pred             EEEEEecCCCCCCC----CChhhCCCCHHHHHHHHHHhhC-CCEEEEcCCCHHH
Confidence            69999999999742    1112235788999999999875 6799999999776

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=5e-08  Score=72.48  Aligned_cols=119  Identities=17%  Similarity=0.025  Sum_probs=77.2

Q ss_pred             CCCccEEEEecCCccccccccc---------------------c---c-cCCCCccCccHHHHHHHHHHCCceEEEEeCC
Q 032013           19 ENLPRLVVFDLDYTLWPFYCEC---------------------C---Y-EDEIPYLYPHAKGILEALKEKGIHVAVASRS   73 (149)
Q Consensus        19 ~~~~k~vifDlDGTLld~~~~~---------------------~---~-~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~   73 (149)
                      ...|.+|+||+|.|++++..+.                     .   . ......+.||+.+++++++++|+++..+|||
T Consensus        32 g~~P~AIifDIDETvLdnspy~~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~IfyVTnR  111 (209)
T d2b82a1          32 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGR  111 (209)
T ss_dssp             TCCCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             CCCCceEEEcchhhhhcCcHHHHhhhhhcCcCcccccCCCcchHHHhcccccccCcchhHHHHHHHHHHcCCeEEEEeCC
Confidence            3446799999999999974431                     0   0 1122457889999999999999999999998


Q ss_pred             Cc---hHHHHHHH-HHcCCCCCccccc---c---cCCChhHHHHHHhhCCCcceEEEeehHhHHHHHHHhCCchhhhhhh
Q 032013           74 PA---PDIAKTFL-HKLGIHSMFVPMV---R---LSCCIMCIIFFLFFFSISAFILFVDLFCFMYAAAYVGCDLYVYKRL  143 (149)
Q Consensus        74 ~~---~~i~~~~l-~~~gl~~~f~~~~---~---~~p~p~~~i~~~~~~~~~~~l~~eDs~~gi~aa~~ag~~~~~~~~~  143 (149)
                      ..   +. +...| +.+|+...-....   .   .|..-  .-+++ ..+  =-|.|=|+.+.+.||..||++.|=..|.
T Consensus       112 ~~~~~e~-T~~nL~K~lG~p~~~~~~vll~~~~~~K~~r--r~~Ik-~y~--I~l~~GD~l~Df~aA~eagi~~iRi~r~  185 (209)
T d2b82a1         112 SPTKTET-VSKTLADNFHIPATNMNPVIFAGDKPGQNTK--SQWLQ-DKN--IRIFYGDSDNDITAARDVGARGIRILRA  185 (209)
T ss_dssp             CCCSSCC-HHHHHHHHTTCCTTTBCCCEECCCCTTCCCS--HHHHH-HTT--EEEEEESSHHHHHHHHHTTCEEEECCCC
T ss_pred             chhhHHH-HHHHHHHHcCCCcccccceEeeCCCCCchHH--HHHHH-HcC--eEEEecCCHHHHhHHHHcCCCceEeecc
Confidence            74   33 34555 4588753211111   1   11222  22222 111  1356679999999999999988765554

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.57  E-value=1.4e-07  Score=66.60  Aligned_cols=90  Identities=10%  Similarity=-0.027  Sum_probs=66.1

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccc------------cccCCChhHHHHHHhhCC
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM------------VRLSCCIMCIIFFLFFFS  113 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~------------~~~~p~p~~~i~~~~~~~  113 (149)
                      .....++....++.++ .+.+.+++|++.... ........+...++...            ...++.....+-...+.+
T Consensus        67 ~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  144 (206)
T d1rkua_          67 TLKPLEGAVEFVDWLR-ERFQVVILSDTFYEF-SQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSL  144 (206)
T ss_dssp             TCCCCTTHHHHHHHHH-TTSEEEEEEEEEHHH-HHHHHHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHHHHHHHT
T ss_pred             hccccchHHHHHHHhh-cCceEEEeccCchHH-HHHHHHHhCCchhhcceeeeecccccccccccchhhHHHHHHHhccc
Confidence            3567788888887765 678999999987777 68888888876654322            122444433344447788


Q ss_pred             CcceEEEeehHhHHHHHHHhCCch
Q 032013          114 ISAFILFVDLFCFMYAAAYVGCDL  137 (149)
Q Consensus       114 ~~~~l~~eDs~~gi~aa~~ag~~~  137 (149)
                      +++++.|=|+.|.+.....||.-+
T Consensus       145 ~~eviaiGDg~NDi~Ml~~Ag~gI  168 (206)
T d1rkua_         145 YYRVIAAGDSYNDTTMLSEAHAGI  168 (206)
T ss_dssp             TCEEEEEECSSTTHHHHHHSSEEE
T ss_pred             ccceEEecCCccCHHHHHhCCccE
Confidence            999999999999999999999543

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.9e-08  Score=71.58  Aligned_cols=43  Identities=26%  Similarity=0.355  Sum_probs=33.7

Q ss_pred             EEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchH
Q 032013           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (149)
Q Consensus        25 vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~   77 (149)
                      ++||+||||++.      ++   .+.|.+.++|++|+++|+ ++++|++....
T Consensus         4 ~lFDlDGTLl~~------~~---~is~~~~~~i~~l~~~g~-~~i~tgrr~~~   46 (244)
T d2fuea1           4 CLFDVDGTLTPA------RQ---KIDPEVAAFLQKLRSRVQ-IGVVGGSDYCK   46 (244)
T ss_dssp             EEEESBTTTBST------TS---CCCHHHHHHHHHHTTTSE-EEEECSSCHHH
T ss_pred             EEEccccCccCC------CC---cCCHHHHHHHHHHHhCCC-EEEEecCChhh
Confidence            457999999983      32   477899999999999996 55677776555

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.40  E-value=7.9e-08  Score=70.81  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=43.5

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      .+++||+||||++.      +.     .+...+.+.+++++|+.++++|||+... +...++.+++..
T Consensus         4 ~li~~DlDGTL~~~------~~-----~~~~~~~~~~~~~~g~~v~i~TGR~~~~-~~~~~~~~~~~~   59 (244)
T d1s2oa1           4 LLLISDLDNTWVGD------QQ-----ALEHLQEYLGDRRGNFYLAYATGRSYHS-ARELQKQVGLME   59 (244)
T ss_dssp             EEEEECTBTTTBSC------HH-----HHHHHHHHHHTTGGGEEEEEECSSCHHH-HHHHHHHHTCCC
T ss_pred             eEEEEECcccCCCC------CC-----CHHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHcCCCC
Confidence            36788999999983      11     1234455666788899999999999998 799999988754

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.30  E-value=3.6e-06  Score=58.01  Aligned_cols=99  Identities=18%  Similarity=0.033  Sum_probs=73.3

Q ss_pred             ccEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcccccccCCC
Q 032013           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~~~~~~~p~  101 (149)
                      ..+++||.+||++-+     -.   -++.|++.+.++.|++.|+++.++||-.... +..+.+.+|+..+|.     ...
T Consensus         3 ~~~~~~d~~~~~~~g-----~~---D~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~-a~~ia~~lgI~~v~~-----~~~   68 (135)
T d2b8ea1           3 VTAVIFDKTGTLTKG-----KP---DTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVIA-----EVL   68 (135)
T ss_dssp             CCEEEEECCCCCBCS-----CC---CCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEEC-----SCC
T ss_pred             EEEEEECCceEEEEe-----cC---CCCCccHHHHHHHHHHcCCEEEEEcCcchhh-hhHHHhhhhhhhhcc-----ccc
Confidence            568999999999863     11   2588999999999999999999999999888 899999999976543     333


Q ss_pred             hhHHHHHHhhCCC-cceEEEeehHhHHHHHHHhC
Q 032013          102 IMCIIFFLFFFSI-SAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       102 p~~~i~~~~~~~~-~~~l~~eDs~~gi~aa~~ag  134 (149)
                      |......-..+.. .....+=|..|...|-++|+
T Consensus        69 p~~k~~~v~~~q~~~~v~~vGDg~nD~~aL~~Ad  102 (135)
T d2b8ea1          69 PHQKSEEVKKLQAKEVVAFVGDGINDAPALAQAD  102 (135)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEECSSSSHHHHHHSS
T ss_pred             hhHHHHHHHHHHcCCEEEEEeCCCCcHHHHHhCC
Confidence            4332222222233 33445559999998888885

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=8.6e-07  Score=68.61  Aligned_cols=88  Identities=16%  Similarity=0.038  Sum_probs=60.6

Q ss_pred             CCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCC----cc------cc--cccCCChhH-------H-
Q 032013           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM----FV------PM--VRLSCCIMC-------I-  105 (149)
Q Consensus        46 ~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~----f~------~~--~~~~p~p~~-------~-  105 (149)
                      ...+.||+.++++.|+++|++++|+|++-... ++.+++++|+...    +.      ..  .+.-+.|.+       . 
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~-ie~vl~~lg~~~~ni~I~sN~l~f~~~~~~~~~~~~~i~~~~K~~~~  211 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDV-LEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGA  211 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHHHTTCCBTTEEEEEECEEECTTSBEEEECSSCCCTTCHHHHH
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHcCCCccCceEEeeEEEEeCCeeEeeccCCccccccCcchh
Confidence            46789999999999999999999999998887 7999999998642    11      00  011111110       1 


Q ss_pred             ----HHHHhhCCCcceEEEeehHhHHHHHHHhC
Q 032013          106 ----IFFLFFFSISAFILFVDLFCFMYAAAYVG  134 (149)
Q Consensus       106 ----i~~~~~~~~~~~l~~eDs~~gi~aa~~ag  134 (149)
                          .+....-+..+.+++=||.+.+..|..+.
T Consensus       212 ~~~~~~~~~~~~~~~vI~iGDs~~Dl~Ma~g~~  244 (291)
T d2bdua1         212 LKNTDYFSQLKDNSNIILLGDSQGDLRMADGVA  244 (291)
T ss_dssp             HTTHHHHHHTTTCCEEEEEESSSGGGGTTTTCS
T ss_pred             hhhHHHHhccCCcCcEEEEeCCHhHHHHHhCCc
Confidence                11112223456788899999998887653

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.6e-07  Score=66.63  Aligned_cols=87  Identities=11%  Similarity=-0.052  Sum_probs=54.8

Q ss_pred             CCCccCccHHHHHHHHHHCC-ceEEEEeCCCch---HH--HHHHHHHcCCCCCcccccccCCChhHHHHHHhhCCCcceE
Q 032013           45 EIPYLYPHAKGILEALKEKG-IHVAVASRSPAP---DI--AKTFLHKLGIHSMFVPMVRLSCCIMCIIFFLFFFSISAFI  118 (149)
Q Consensus        45 ~~~~~~pg~~e~L~~Lk~~G-i~i~IaT~~~~~---~i--~~~~l~~~gl~~~f~~~~~~~p~p~~~i~~~~~~~~~~~l  118 (149)
                      +..++.||+.++++.|++.| +.+.++|+++..   ..  -...+++......... ..+. ..      +..+  ..-+
T Consensus        71 ~~L~p~~gA~e~l~~L~~~~~~~v~i~t~~~~~~~~~~~~k~~Wl~~~~~~~~~~~-~~~t-~~------K~~~--~~d~  140 (195)
T d1q92a_          71 FELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQ-IVLT-RD------KTVV--SADL  140 (195)
T ss_dssp             TTCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHHHHHHHHCGGGGGG-EEEC-SC------STTS--CCSE
T ss_pred             hhCCcccCHHHHHHHHhhccCccceEEccccccCcchHHHHHHHHHHhcCCCCccE-EEEc-cc------ccee--cCeE
Confidence            55789999999999999865 578888987632   10  1234554421111111 1111 11      1111  2238


Q ss_pred             EEeehHhHHHHHHHhCCchhhhh
Q 032013          119 LFVDLFCFMYAAAYVGCDLYVYK  141 (149)
Q Consensus       119 ~~eDs~~gi~aa~~ag~~~~~~~  141 (149)
                      .+||+|.-+.++.++|..+|++.
T Consensus       141 lIDD~p~n~~~~~~~g~~~il~~  163 (195)
T d1q92a_         141 LIDDRPDITGAEPTPSWEHVLFT  163 (195)
T ss_dssp             EEESCSCCCCSCSSCSSEEEEEC
T ss_pred             EecCcHHHHHHHhcCCCeEEEEC
Confidence            99999999999999999999874

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.3e-05  Score=57.37  Aligned_cols=100  Identities=16%  Similarity=0.053  Sum_probs=66.5

Q ss_pred             ccEEEEecCCcccccccccc--------------ccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcC
Q 032013           22 PRLVVFDLDYTLWPFYCECC--------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~~~--------------~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~g   87 (149)
                      ..++++|+|+||+.+.....              ...-.+...||+.++|+++.+. +.++|.|++.... ++.+++.+.
T Consensus        15 k~~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-yei~I~Ta~~~~Y-A~~il~~ld   92 (181)
T d1ta0a_          15 KICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAKY-ADPVADLLD   92 (181)
T ss_dssp             SCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHHHC
T ss_pred             CeEEEEeCCCCEEccccCCCCCccceeeecccceeeeeEEecCCCHHHHHHHHHhc-eEEEEEcCCcHHH-HHHHHHHhc
Confidence            45799999999996421100              0011245699999999999887 9999999999999 899999987


Q ss_pred             CCCCccccc----ccCCChhHHHHHH----hhCCCcceEEEeehHhH
Q 032013           88 IHSMFVPMV----RLSCCIMCIIFFL----FFFSISAFILFVDLFCF  126 (149)
Q Consensus        88 l~~~f~~~~----~~~p~p~~~i~~~----~~~~~~~~l~~eDs~~g  126 (149)
                      -...|...-    .....+   -+.+    .+-+.+..++++|++.-
T Consensus        93 p~~~~~~~~~r~~c~~~~~---~~~KdL~~l~~~l~~vvivDd~~~~  136 (181)
T d1ta0a_          93 KWGAFRARLFRESCVFHRG---NYVKDLSRLGRDLRRVLILDNSPAS  136 (181)
T ss_dssp             SSCCEEEEECGGGSEEETT---EEECCGGGSCSCGGGEEEECSCGGG
T ss_pred             cCCceeEEEEeeeeeecCC---cccccHhhcCCCHHHeEEEcCChhh
Confidence            665554321    111111   1112    33445788888888753

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.40  E-value=0.00021  Score=50.43  Aligned_cols=59  Identities=17%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             cEEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCC
Q 032013           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (149)
Q Consensus        23 k~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~   90 (149)
                      ..+++|.+|||+-...        -++.|++.++++.|++.|+++.++||-.... +..+.+++|+..
T Consensus         3 ~~~~~d~~~~~~~~~~--------Dp~R~~~~~~I~~l~~~GI~v~miTGD~~~t-A~~ia~~~Gi~~   61 (168)
T d1wpga2           3 SVICSDKTGTLTTNQL--------DPPRKEVMGSIQLCRDAGIRVIMITGDNKGT-AIAICRRIGIFG   61 (168)
T ss_dssp             CEEEECCTTTTBCCCE--------CCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTSSC
T ss_pred             EEEEECCccEEEEEec--------CCCchhHHHHHHHHHHCcCEEEEECCCCHHH-HHHHHHHcCCCC
Confidence            3578999999996311        2688999999999999999999999999888 899999999854

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

Probab=91.85  E-value=0.077  Score=42.50  Aligned_cols=59  Identities=15%  Similarity=0.125  Sum_probs=47.2

Q ss_pred             CccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHH-c--------CCCCCcccccccCCChhHHHHH
Q 032013           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-L--------GIHSMFVPMVRLSCCIMCIIFF  108 (149)
Q Consensus        47 ~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~-~--------gl~~~f~~~~~~~p~p~~~i~~  108 (149)
                      +..-|.+..+|++|++.|.++.++||++... +...++. +        .+.++||.+....-+|  ..|.
T Consensus       184 v~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-~~~~m~y~~~~~~~~g~dWr~lFDvVIv~A~KP--~FF~  251 (458)
T d2bdea1         184 VIREKEVVEGLKHFIRYGKKIFILTNSEYSY-SKLLLDYALSPFLDKGEHWQGLFEFVITLANKP--RFFY  251 (458)
T ss_dssp             EECCHHHHHHHHHHHTTTCEEEEECSSCHHH-HHHHHHHHHGGGSCTTCCGGGTEEEEEESCCHH--HHHH
T ss_pred             hcCChhHHHHHHHHHHcCCeEEEEecCcHHH-HHHHhhhhcccCCCCCCChHHhceEEEeCCCCC--CccC
Confidence            3445778899999999999999999999988 6777765 3        5778899887777777  5554

>d1jx7a_ c.114.1.1 (A:) Hypothetical protein YchN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: DsrEFH-like
superfamily: DsrEFH-like
family: DsrEF-like
domain: Hypothetical protein YchN
species: Escherichia coli [TaxId: 562]

Probab=82.16  E-value=1.1  Score=28.22  Aligned_cols=44  Identities=14%  Similarity=0.076  Sum_probs=32.4

Q ss_pred             EEEEecCCccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCC
Q 032013           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS   73 (149)
Q Consensus        24 ~vifDlDGTLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~   73 (149)
                      .|+|.-||+.+-.     + .....-.+...+.++.|.++|.++.++..+
T Consensus        38 ~vff~~dgV~~~~-----~-~~~~~~~~~~~~~l~~l~~~gv~v~vC~~~   81 (117)
T d1jx7a_          38 RLFLMSDAVTAGL-----R-GQKPGEGYNIQQMLEILTAQNVPVKLCKTC   81 (117)
T ss_dssp             EEEECGGGGGGGB-----S-CCCCSSSCCHHHHHHHHHHTTCCEEEEHHH
T ss_pred             EEEEecchHHHhh-----c-cCCccccccHHHHHHHHHHCCCEEEEEHHH
Confidence            5999999999852     1 111223467889999999999998887643

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.34  E-value=0.26  Score=37.79  Aligned_cols=18  Identities=17%  Similarity=0.135  Sum_probs=14.5

Q ss_pred             ccEEEEecCCcccccccc
Q 032013           22 PRLVVFDLDYTLWPFYCE   39 (149)
Q Consensus        22 ~k~vifDlDGTLld~~~~   39 (149)
                      ++.|+||+||+|++.+..
T Consensus         1 ~~~i~fd~dGVll~~~~~   18 (380)
T d1qyia_           1 MKKILFDVDGVFLSEERC   18 (380)
T ss_dssp             CCEEEECSBTTTBCSHHH
T ss_pred             CceEEEeCCcEEEcceee
Confidence            367999999999996444

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

Probab=80.23  E-value=1.1  Score=27.47  Aligned_cols=59  Identities=17%  Similarity=0.131  Sum_probs=41.5

Q ss_pred             CccEEEEecCC-ccccccccccccCCCCccCccHHHHHHHHHHCCceEEEEeCCCchHHHHHHHHHcCCCCCcc
Q 032013           21 LPRLVVFDLDY-TLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (149)
Q Consensus        21 ~~k~vifDlDG-TLld~~~~~~~~~~~~~~~pg~~e~L~~Lk~~Gi~i~IaT~~~~~~i~~~~l~~~gl~~~f~   93 (149)
                      .++.+++|+++ +.+|+           .-..-..++.+.++++|.++.++. - .+. +...++..|+.++|.
T Consensus        43 ~~~~vvid~~~v~~iDs-----------sg~~~l~~~~~~~~~~~~~l~l~~-~-~~~-v~~~l~~~gl~~~~~  102 (110)
T d1vc1a_          43 SKKKIVLDLSSVSYMDS-----------AGLGTLVVILKDAKINGKEFILSS-L-KES-ISRILKLTHLDKIFK  102 (110)
T ss_dssp             CCSEEEEEEEECCCBCH-----------HHHHHHHHHHHHHHHTTCEEEEES-C-CHH-HHHHHHHHTGGGTSE
T ss_pred             CCCEEEEEEECCCccCH-----------HHHHHHHHHHHHHHhCCCEEEEEe-C-CHH-HHHHHHHcCCCceee
Confidence            36789999998 45552           122334577889999999887555 3 355 689999999877653