Citrus Sinensis ID: 032014

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MNRQLLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
ccHHHHHHHHHHHHHHcccccccEEccccccccEEEEEEEEEcccccccccEEEEEEEEEEEEEEcEEEEEEEEEcEEEEcccccccccccccccccccEEEEEEEEcccccccEEEEEEEEEEEccccEEEEEEEEEEEccccccccc
ccHHEEEEEEEEHHHcccccccccccccccccEEEEEEEEEcccccccccEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEccccccccccccccccccEEEEEEEEccccccccEEEEEEEEEEccccEEEEEEEEEEEEcccccccc
MNRQLLLLFTFYVLVSSIQaidftycddeenfplkvqqikiipdpvvtgkpaifnisavtdrsvsggkVMIEVRYFGIRVHsethdiceevscpieagnfvlshaetlpgytppgvyTLKMKmigkngyqlTCFSFKFKIGFGALVSES
MNRQLLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNIsavtdrsvsggkVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
MNRQLLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
****LLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALV***
*NRQLLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGAL****
MNRQLLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
*NRQLLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGA*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MNRQLLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query149 2.2.26 [Sep-21-2011]
Q54SW1145 Putative phosphatidylglyc yes no 0.919 0.944 0.276 6e-14
Q4X136175 Phosphatidylglycerol/phos yes no 0.791 0.674 0.299 8e-13
O94183175 Phosphatidylglycerol/phos yes no 0.751 0.64 0.305 9e-12
Q5A8A2192 Phosphatidylglycerol/phos N/A no 0.738 0.572 0.293 2e-10
Q6CNE0173 Phosphatidylglycerol/phos yes no 0.738 0.635 0.285 1e-09
Q756Q3213 Phosphatidylglycerol/phos yes no 0.744 0.521 0.317 3e-09
Q6CHU5189 Phosphatidylglycerol/phos yes no 0.751 0.592 0.313 5e-09
Q6BV42196 Phosphatidylglycerol/phos yes no 0.684 0.520 0.305 1e-08
Q52FS9178 Phosphatidylglycerol/phos N/A no 0.785 0.657 0.258 3e-08
Q5B0Q1169 Phosphatidylglycerol/phos yes no 0.771 0.680 0.272 3e-08
>sp|Q54SW1|Y2179_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2 Back     alignment and function desciption
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 1   MNRQLLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVT 60
           M + +LLL   ++L+  +    + YCD   N   K+ ++ ++PDP + GK    ++    
Sbjct: 1   MIKTILLLLINFMLILIVNGDIWNYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSL 60

Query: 61  DRSVSGGKVMIEVRYF---GIRVHSETH-DICEEVSCPIEAGNFVLSHAETLPGYTPPGV 116
           +  ++ G  +  V +F   G R     H DIC+ +SCP+ AG F  S +  +P +TP G 
Sbjct: 61  NEQITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPHGQ 120

Query: 117 YTLKMKMIGKNGYQLTCFSFK 137
           Y  ++ +  ++   +TC +F+
Sbjct: 121 YKGQLTLTDQSNRNVTCLTFQ 141
Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.
Dictyostelium discoideum (taxid: 44689)
>sp|Q4X136|NPC2_ASPFU Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=npc2 PE=3 SV=2 Back     alignment and function description
>sp|O94183|NPC2_ASPOR Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pltp PE=1 SV=1 Back     alignment and function description
>sp|Q5A8A2|NPC2_CANAL Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NPC2 PE=3 SV=1 Back     alignment and function description
>sp|Q6CNE0|NPC2_KLULA Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NPC2 PE=3 SV=1 Back     alignment and function description
>sp|Q756Q3|NPC2_ASHGO Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NPC2 PE=3 SV=1 Back     alignment and function description
>sp|Q6CHU5|NPC2_YARLI Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NPC2 PE=3 SV=1 Back     alignment and function description
>sp|Q6BV42|NPC2_DEBHA Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NPC2 PE=3 SV=1 Back     alignment and function description
>sp|Q52FS9|NPC2_MAGO7 Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=NPC2 PE=3 SV=2 Back     alignment and function description
>sp|Q5B0Q1|NPC2_EMENI Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=npc2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
225464822154 PREDICTED: putative phosphatidylglycerol 0.953 0.922 0.556 6e-42
147804852154 hypothetical protein VITISV_030670 [Viti 0.953 0.922 0.556 7e-42
297833968153 hypothetical protein ARALYDRAFT_478524 [ 0.953 0.928 0.524 1e-39
21554315153 unknown [Arabidopsis thaliana] 0.953 0.928 0.510 4e-39
18399355153 MD-2-related lipid recognition domain-co 0.953 0.928 0.510 4e-39
351723665154 uncharacterized protein LOC100306050 pre 0.932 0.902 0.489 7e-39
255566183155 Phosphatidylglycerol/phosphatidylinosito 0.966 0.929 0.479 9e-38
224088120152 predicted protein [Populus trichocarpa] 0.953 0.934 0.507 1e-37
388516113152 unknown [Lotus japonicus] 0.973 0.953 0.475 6e-37
388502424152 unknown [Lotus japonicus] 0.973 0.953 0.475 8e-37
>gi|225464822|ref|XP_002270174.1| PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Vitis vinifera] gi|296084851|emb|CBI28260.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 104/142 (73%)

Query: 8   LFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG 67
            F   +LV SIQA   +YCD +  + +KVQ I+I PDP++ GKPA F ISA     +SGG
Sbjct: 13  FFAVCLLVPSIQAKSVSYCDKKGQYAVKVQDIQISPDPIIPGKPATFTISASAGEGISGG 72

Query: 68  KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKN 127
           KV+IEV  FG+ VH+E+H++CEE SCPI  GNF LSH++ LPG+TPPG YTLKMKM  ++
Sbjct: 73  KVVIEVSLFGVHVHTESHNLCEETSCPISGGNFELSHSQMLPGFTPPGSYTLKMKMEDES 132

Query: 128 GYQLTCFSFKFKIGFGALVSES 149
            +QLTC +F F IGFG+ V++S
Sbjct: 133 KHQLTCITFNFNIGFGSYVADS 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147804852|emb|CAN64691.1| hypothetical protein VITISV_030670 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297833968|ref|XP_002884866.1| hypothetical protein ARALYDRAFT_478524 [Arabidopsis lyrata subsp. lyrata] gi|297330706|gb|EFH61125.1| hypothetical protein ARALYDRAFT_478524 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21554315|gb|AAM63420.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18399355|ref|NP_566400.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana] gi|6671934|gb|AAF23194.1|AC016795_7 unknown protein [Arabidopsis thaliana] gi|14334430|gb|AAK59413.1| unknown protein [Arabidopsis thaliana] gi|28393843|gb|AAO42329.1| unknown protein [Arabidopsis thaliana] gi|332641577|gb|AEE75098.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|351723665|ref|NP_001236775.1| uncharacterized protein LOC100306050 precursor [Glycine max] gi|255627393|gb|ACU14041.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255566183|ref|XP_002524079.1| Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis] gi|223536647|gb|EEF38289.1| Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224088120|ref|XP_002308330.1| predicted protein [Populus trichocarpa] gi|118482629|gb|ABK93234.1| unknown [Populus trichocarpa] gi|222854306|gb|EEE91853.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388516113|gb|AFK46118.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388502424|gb|AFK39278.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
TAIR|locus:2081368152 AT3G44100 "AT3G44100" [Arabido 0.953 0.934 0.544 3e-37
TAIR|locus:2144078153 AT5G06480 "AT5G06480" [Arabido 0.912 0.888 0.522 1e-36
DICTYBASE|DDB_G0282179145 DDB_G0282179 "ML domain-contai 0.919 0.944 0.276 8.8e-15
CGD|CAL0003259192 orf19.3226 [Candida albicans ( 0.738 0.572 0.293 8.2e-12
UNIPROTKB|Q5A8A2192 NPC2 "Phosphatidylglycerol/pho 0.738 0.572 0.293 8.2e-12
DICTYBASE|DDB_G0278295141 DDB_G0278295 "ML domain-contai 0.872 0.921 0.276 1.5e-10
DICTYBASE|DDB_G0270454151 DDB_G0270454 "ML domain-contai 0.926 0.913 0.205 2e-10
DICTYBASE|DDB_G0287185151 DDB_G0287185 "ML domain-contai 0.926 0.913 0.208 3.2e-10
UNIPROTKB|Q52FS9178 NPC2 "Phosphatidylglycerol/pho 0.738 0.617 0.273 1.1e-09
TAIR|locus:505006248160 AT2G16005 "AT2G16005" [Arabido 0.946 0.881 0.277 1.4e-09
TAIR|locus:2081368 AT3G44100 "AT3G44100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 79/145 (54%), Positives = 100/145 (68%)

Query:     5 LLLLFTFYVLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSV 64
             LLLL  F++   ++ A  FTYCD   + P+KV  +KI PDPVV+G  A F I   T   +
Sbjct:    11 LLLLSVFFL--PALHATSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDI 67

Query:    65 SGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMI 124
             SGGKV+I V Y GI VH+ETHD+C+E +CP+  G+FVLSH++TLP  TPPG YTLKM + 
Sbjct:    68 SGGKVVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTIN 127

Query:   125 GKNGYQLTCFSFKFKIGFGALVSES 149
              KNG +LTC SFKFKI  G+ V  S
Sbjct:   128 DKNGGRLTCISFKFKITVGSAVFAS 152
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0031225 "anchored to membrane" evidence=TAS
GO:0005773 "vacuole" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
TAIR|locus:2144078 AT5G06480 "AT5G06480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282179 DDB_G0282179 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0003259 orf19.3226 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A8A2 NPC2 "Phosphatidylglycerol/phosphatidylinositol transfer protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278295 DDB_G0278295 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270454 DDB_G0270454 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287185 DDB_G0287185 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q52FS9 NPC2 "Phosphatidylglycerol/phosphatidylinositol transfer protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:505006248 AT2G16005 "AT2G16005" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
cd00917122 cd00917, PG-PI_TP, The phosphatidylinositol/phosph 1e-37
smart00737119 smart00737, ML, Domain involved in innate immunity 2e-26
pfam02221132 pfam02221, E1_DerP2_DerF2, ML domain 4e-23
>gnl|CDD|238459 cd00917, PG-PI_TP, The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure Back     alignment and domain information 
 Score =  124 bits (313), Expect = 1e-37
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 23  FTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVH 81
           F YCD      +KV  ++I P+P   G+      S    + +  G  V++EV+Y  IR+ 
Sbjct: 1   FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLL 60

Query: 82  SETHDICEE-----VSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSF 136
           SET+D+C+E     +SCPIE G+  L+    LPG  PPG YT+  +   K+  ++TC SF
Sbjct: 61  SETYDLCDETKNVDLSCPIEPGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEEITCLSF 120

Query: 137 KF 138
             
Sbjct: 121 SV 122

These proteins belong to the ML domain family. Length = 122
>gnl|CDD|214796 smart00737, ML, Domain involved in innate immunity and lipid metabolism Back     alignment and domain information
>gnl|CDD|216934 pfam02221, E1_DerP2_DerF2, ML domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 149
KOG4680153 consensus Uncharacterized conserved protein, conta 100.0
cd00917122 PG-PI_TP The phosphatidylinositol/phosphatidylglyc 100.0
smart00737118 ML Domain involved in innate immunity and lipid me 99.97
PF02221134 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The 99.96
cd00916123 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosom 99.95
cd00918120 Der-p2_like Several group 2 allergen proteins belo 99.95
KOG4063158 consensus Major epididymal secretory protein HE1 [ 99.94
cd00912127 ML The ML (MD-2-related lipid-recognition) domain 99.94
cd00915130 MD-1_MD-2 MD-1 and MD-2 are cofactors required for 99.88
cd00258162 GM2-AP GM2 activator protein (GM2-AP) is a non-enz 99.87
PF14558141 TRP_N: ML-like domain 98.96
PF15418132 DUF4625: Domain of unknown function (DUF4625) 97.68
smart00675164 DM11 Domains in hypothetical proteins in Drosophil 96.89
smart0069793 DM8 Repeats found in several Drosophila proteins. 96.78
PF14524142 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B. 96.66
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 96.09
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 95.54
PF0647781 DUF1091: Protein of unknown function (DUF1091); In 95.29
PF0423497 CopC: CopC domain; InterPro: IPR007348 CopC is a b 94.76
PF02115200 Rho_GDI: RHO protein GDP dissociation inhibitor; I 94.74
PLN00044 596 multi-copper oxidase-related protein; Provisional 94.66
PRK10301124 hypothetical protein; Provisional 93.71
PLN02168 545 copper ion binding / pectinesterase 93.58
PLN02991 543 oxidoreductase 93.34
PLN02354 552 copper ion binding / oxidoreductase 93.23
TIGR02186261 alph_Pro_TM conserved hypothetical protein. This f 92.06
PF05404167 TRAP-delta: Translocon-associated protein, delta s 91.94
PF09608236 Alph_Pro_TM: Putative transmembrane protein (Alph_ 91.43
PF00339149 Arrestin_N: Arrestin (or S-antigen), N-terminal do 90.83
PLN02835 539 oxidoreductase 90.13
PF07732117 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01 89.79
PLN02792 536 oxidoreductase 89.69
KOG1263 563 consensus Multicopper oxidases [Secondary metaboli 89.17
PF00868118 Transglut_N: Transglutaminase family; InterPro: IP 88.45
cd00912127 ML The ML (MD-2-related lipid-recognition) domain 87.81
PRK05461127 apaG CO2+/MG2+ efflux protein ApaG; Reviewed 86.78
PF03443218 Glyco_hydro_61: Glycosyl hydrolase family 61; Inte 86.32
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 86.13
PLN02604 566 oxidoreductase 84.33
COG2372127 CopC Uncharacterized protein, homolog of Cu resist 83.68
PF1375454 Big_3_4: Bacterial Ig-like domain (group 3) 83.17
COG2967126 ApaG Uncharacterized protein affecting Mg2+/Co2+ t 82.77
TIGR01480 587 copper_res_A copper-resistance protein, CopA famil 82.04
cd00916123 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosom 82.01
PF0183599 A2M_N: MG2 domain; InterPro: IPR002890 The protein 80.1
KOG3205200 consensus Rho GDP-dissociation inhibitor [Signal t 80.01
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.9e-34  Score=198.28  Aligned_cols=135  Identities=47%  Similarity=0.913  Sum_probs=127.8

Q ss_pred             hhhhcccccceeecCCCCCCcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEEccCCcCCCCccC
Q 032014           13 VLVSSIQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVS   92 (149)
Q Consensus        13 l~~~~~~~~~~~~C~~~~~~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~   92 (149)
                      +..+..++.++.+|+....+.++|++|.++|+|+.||++++|+++++..++|..|++.++++||||++.+++.|+|+.++
T Consensus        17 ~~~~i~~a~~~~yCd~~d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdets   96 (153)
T KOG4680|consen   17 LTKPINGATPVHYCDINDEYEVKVKEVNISPNPPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETS   96 (153)
T ss_pred             ccccccCCCcchhhhhcccceEEEEEEecCCCCCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeecccccccccc
Confidence            33456788999999987777999999999999999999999999999999999999889999999999999999999999


Q ss_pred             CCCCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEecccccc
Q 032014           93 CPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVS  147 (149)
Q Consensus        93 CPl~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~~~~~  147 (149)
                      ||++||+|....++.+|.+.|+|+|.+++++.|++|++++|+.|.|++.+..+|-
T Consensus        97 CPVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~LTCisfsf~i~~g~~v~  151 (153)
T KOG4680|consen   97 CPVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKELTCISFSFDIGFGSSVA  151 (153)
T ss_pred             CCcCcCceeeeeeEeccCcCCCceEEEEEEeecCCCCEEEEEEEEEEeeccceec
Confidence            9999999999999999999999999999999999999999999999999888774

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure Back     alignment and domain information
>smart00737 ML Domain involved in innate immunity and lipid metabolism Back     alignment and domain information
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products Back     alignment and domain information
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes Back     alignment and domain information
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family Back     alignment and domain information
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown] Back     alignment and domain information
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi Back     alignment and domain information
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors Back     alignment and domain information
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides Back     alignment and domain information
>PF14558 TRP_N: ML-like domain Back     alignment and domain information
>PF15418 DUF4625: Domain of unknown function (DUF4625) Back     alignment and domain information
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329 Back     alignment and domain information
>smart00697 DM8 Repeats found in several Drosophila proteins Back     alignment and domain information
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects Back     alignment and domain information
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule Back     alignment and domain information
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them Back     alignment and domain information
>PLN00044 multi-copper oxidase-related protein; Provisional Back     alignment and domain information
>PRK10301 hypothetical protein; Provisional Back     alignment and domain information
>PLN02168 copper ion binding / pectinesterase Back     alignment and domain information
>PLN02991 oxidoreductase Back     alignment and domain information
>PLN02354 copper ion binding / oxidoreductase Back     alignment and domain information
>TIGR02186 alph_Pro_TM conserved hypothetical protein Back     alignment and domain information
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta) Back     alignment and domain information
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids Back     alignment and domain information
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli Back     alignment and domain information
>PLN02835 oxidoreductase Back     alignment and domain information
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>PLN02792 oxidoreductase Back     alignment and domain information
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2 Back     alignment and domain information
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi Back     alignment and domain information
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed Back     alignment and domain information
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>PLN02604 oxidoreductase Back     alignment and domain information
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only] Back     alignment and domain information
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3) Back     alignment and domain information
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01480 copper_res_A copper-resistance protein, CopA family Back     alignment and domain information
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes Back     alignment and domain information
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white Back     alignment and domain information
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
1nep_A130 EPV20, BNPC2, epididymal secretory protein E1; nie 2e-10
2ag4_A164 GM2-AP, ganglioside GM2 activator; complex of sing 7e-10
3m7o_A162 Lymphocyte antigen 86; beta sheet, glycoprotein, i 9e-09
1xwv_A129 DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8 2e-07
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A* Length = 130 Back     alignment and structure
 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 12/131 (9%)

Query: 19  QAIDFTYCDDEENFPLKVQQIKIIPDP-----VVTGKPAIFNISAVTDRSVSGGKVMIEV 73
           + + F  C        +V    + P P     +  G+    N++  ++      K ++  
Sbjct: 1   EPVKFKDCGSWVGVIKEVN---VSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHG 57

Query: 74  RYFGIRVHSET--HDICE-EVSCPIEAGNFVLSHAE-TLPGYTPPGVYTLKMKMIGKNGY 129
              GI V       D C+  + CPIE         +  +    P     ++ ++      
Sbjct: 58  IVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQ 117

Query: 130 QLTCFSFKFKI 140
           +  C+    ++
Sbjct: 118 RFFCWQIPIEV 128
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A* Length = 164 Back     alignment and structure
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C* Length = 162 Back     alignment and structure
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A Length = 129 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
1nep_A130 EPV20, BNPC2, epididymal secretory protein E1; nie 99.97
1xwv_A129 DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8 99.96
2ag4_A164 GM2-AP, ganglioside GM2 activator; complex of sing 99.93
3m7o_A162 Lymphocyte antigen 86; beta sheet, glycoprotein, i 99.89
3mtx_A151 Protein MD-1; LY86, RP105 associated protein, immu 99.78
3vq2_C144 Lymphocyte antigen 96; leucine rich repeat MD-2 re 99.7
2e56_A144 Lymphocyte antigen 96; innate immunity, lipid-bind 99.3
2r5o_A188 Putative ATP binding component of ABC- transporter 95.47
3idu_A127 Uncharacterized protein; all beta-protein, structu 94.75
1kmt_A141 RHO GDP-dissociation inhibitor 1; immunoglobulin f 94.5
1doa_B219 RHO GDI 1, protein (GDP-dissociation inhibitor 1); 93.9
1ds6_B180 RHO GDP-dissociation inhibitor 2; beta sandwhich, 93.67
2vtc_A249 CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 92.54
1lyq_A104 PCOC copper resistance protein; beta barrel, IG do 91.97
2f1e_A127 Protein APAG; APAG protein, xanthomonas axonopodis 91.86
2c9r_A102 COPC, copper resistance protein C; copper transpor 91.63
1xvs_A126 Protein APAG; MCSG APC26324, midwest center for st 91.42
1tza_A134 APAG protein, SOR45; structural genomics, PSI, pro 91.34
1xq4_A139 Protein APAG; all beta protein, structural genomic 91.21
2l0d_A114 Cell surface protein; structural genomics, northea 89.74
3eja_A208 Protein GH61E; beta sandwich, fibronectin type III 89.02
4eir_A223 Polysaccharide monooxygenase-2; GH61, PMO, cellula 88.26
2kut_A122 Uncharacterized protein; structural genomics, PSI- 87.47
4eis_A225 Polysaccharide monooxygenase-3; GH61, PMO, cellula 86.18
1v10_A 521 Laccase; multicopper blue oxidase, oxidase; 1.7A { 84.84
3zud_A228 GH61 isozyme A; hydrolase, degradation of recalcit 83.32
1nep_A130 EPV20, BNPC2, epididymal secretory protein E1; nie 81.98
1xwv_A129 DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8 81.8
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 80.98
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A* Back     alignment and structure
Probab=99.97  E-value=1.7e-30  Score=183.14  Aligned_cols=123  Identities=15%  Similarity=0.293  Sum_probs=108.9

Q ss_pred             ccceeecCCCCC--CcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceEEE--ccCCcCCCC-ccCCC
Q 032014           20 AIDFTYCDDEEN--FPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRV--HSETHDICE-EVSCP   94 (149)
Q Consensus        20 ~~~~~~C~~~~~--~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~--~~~~~d~C~-~~~CP   94 (149)
                      ++.|++|++..+  ..++|++|+..||+++||++++|+++|+++++++++++++.++++|+++  +....|+|+ ++.||
T Consensus         2 ~~~f~~C~~~~~~i~~V~V~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CP   81 (130)
T 1nep_A            2 PVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCP   81 (130)
T ss_dssp             BCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSS
T ss_pred             CcEEEECCCCCCeEeEEEECCCCCCCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcCc
Confidence            578999998543  3566777777777889999999999999999999999999999999765  456789997 58999


Q ss_pred             CCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEec
Q 032014           95 IEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  142 (149)
Q Consensus        95 l~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  142 (149)
                      +++|+ |+|+++++|++.+|.++|+++|+|+|++|+.++|++++++|++
T Consensus        82 l~~G~~~~y~~~lpV~~~~P~~~~~v~~~L~d~~~~~l~C~~~~~~I~~  130 (130)
T 1nep_A           82 IEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFFCWQIPIEVEA  130 (130)
T ss_dssp             BCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred             ccCCcEEEEEEEeEecccCCCccEEEEEEEEcCCCCEEEEEEEeEEEEC
Confidence            99996 9999999999999999999999999999999999999999974
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A Back     alignment and structure
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A* Back     alignment and structure
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C* Back     alignment and structure
>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A* Back     alignment and structure
>3vq2_C Lymphocyte antigen 96; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_C* 2z64_C* Back     alignment and structure
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C* Back     alignment and structure
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli} Back     alignment and structure
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Back     alignment and structure
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Back     alignment and structure
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Back     alignment and structure
>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina} Back     alignment and structure
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A Back     alignment and structure
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Back     alignment and structure
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A Back     alignment and structure
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1 Back     alignment and structure
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1 Back     alignment and structure
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A* Back     alignment and structure
>4eir_A Polysaccharide monooxygenase-2; GH61, PMO, cellulase, biofuels copper monooxygenase, peroxide, superoxide, CBP21, beta-SAN fold, secreted; HET: HIC NAG GOL; 1.10A {Neurospora crassa} Back     alignment and structure
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} Back     alignment and structure
>4eis_A Polysaccharide monooxygenase-3; GH61, PMO, cellulase, biofuels, CBM33, copper monooxygenase, peroxide, superoxide, CBP21, beta-sandwich fold; HET: HIC DAH NAG; 1.37A {Neurospora crassa} PDB: 4eis_B* Back     alignment and structure
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 Back     alignment and structure
>3zud_A GH61 isozyme A; hydrolase, degradation of recalcitrant biomass; HET: HIC NAG TAM; 1.25A {Thermoascus aurantiacus} PDB: 2yet_A* Back     alignment and structure
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A* Back     alignment and structure
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 149
d2ag4a1163 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator 9e-20
d1nepa_130 b.1.18.7 (A:) Epididymal secretory protein E1 (Nie 3e-15
d1xwva_129 b.1.18.7 (A:) Major mite allergen {House-dust mite 2e-13
>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]} Length = 163 Back     information, alignment and structure

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 9e-20
 Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 41/162 (25%)

Query: 18  IQAIDFTYCDDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG---KVMIEVR 74
           + +  +  CD+ ++ P  ++ + + PDP+V       ++   T   +S      +++E  
Sbjct: 1   MSSFSWDNCDEGKD-PAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKE 59

Query: 75  YFGIRVHS---------ETHDICEE---------------------VSCPIEAGNFVLSH 104
             G+ +                C+                        CP + G + L  
Sbjct: 60  VAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPK 119

Query: 105 AET------LPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 140
           +E       LP +   G Y ++   +  +G +L C      +
Sbjct: 120 SEFVVPDLELPSWLTTGNYRIESV-LSSSGKRLGCIKIAASL 160
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Length = 130 Back     information, alignment and structure
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]} Length = 129 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
d1nepa_130 Epididymal secretory protein E1 (Niemann-Pick C2 p 99.97
d1xwva_129 Major mite allergen {House-dust mite (Dermatophago 99.95
d2ag4a1163 Ganglioside M2 (gm2) activator {Human (Homo sapien 99.9
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 96.43
d1kmta_138 Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H 95.57
d1ds6b_179 Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H 95.34
d1g0da1135 Transglutaminase N-terminal domain {Red sea bream 94.63
d1ix2a_102 Copper resistance protein C (CopC, PcoC) {Escheric 93.43
d2c9qa1102 Copper resistance protein C (CopC, PcoC) {Pseudomo 92.57
d1tzaa_132 ApaG {Shewanella oneidensis [TaxId: 70863]} 91.45
d1vjja1140 Transglutaminase N-terminal domain {Human (Homo sa 90.97
d1xvsa_124 ApaG {Vibrio cholerae [TaxId: 666]} 89.42
d1xq4a_123 ApaG {Bordetella pertussis [TaxId: 520]} 88.5
d1nepa_130 Epididymal secretory protein E1 (Niemann-Pick C2 p 84.68
d1ex0a1184 Transglutaminase N-terminal domain {Human (Homo sa 84.67
d2q3za1131 Transglutaminase N-terminal domain {Human (Homo sa 84.46
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.1e-31  Score=186.08  Aligned_cols=124  Identities=14%  Similarity=0.289  Sum_probs=109.9

Q ss_pred             cccceeecCCCCC--CcEEEeEEEEecCCCCCCCcEEEEEEEEEeeEecCcEEEEEEEEceE--EEccCCcCCCCc-cCC
Q 032014           19 QAIDFTYCDDEEN--FPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGI--RVHSETHDICEE-VSC   93 (149)
Q Consensus        19 ~~~~~~~C~~~~~--~~~~i~~v~i~P~p~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~--~~~~~~~d~C~~-~~C   93 (149)
                      +.++|++||+..+  ..++|++|+..||+++||++++++++|+++++++++++++.++++|+  |++..+.|+|+. ++|
T Consensus         1 e~v~f~~Cg~~~~~~~~v~I~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~C   80 (130)
T d1nepa_           1 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRC   80 (130)
T ss_dssp             CBCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCS
T ss_pred             CCcceEeCCCCCCcEEEEEEeCCCCCCCEeeCCCEEEEEEEEEcCcccceEEEEEEEEECCEEecccCCCCcccccCCcC
Confidence            3578999998543  35667777777888999999999999999999999999999999997  455667799974 899


Q ss_pred             CCCCCc-EEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEec
Q 032014           94 PIEAGN-FVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  142 (149)
Q Consensus        94 Pl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  142 (149)
                      |+++|+ |+|+++++||+.+|.++|+++|+|+|++|+.++|++++++|.+
T Consensus        81 Pl~~G~~~~y~~~~~I~~~~P~~~~~v~~~l~d~~~~~i~Cf~v~~~I~~  130 (130)
T d1nepa_          81 PIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFFCWQIPIEVEA  130 (130)
T ss_dssp             SBCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred             CccCCceEEEEEEEEcchhhccEEEEEEEEEEcCCCCEEEEEEEeeEEEC
Confidence            999996 9999999999999999999999999999999999999999974
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]} Back     information, alignment and structure
>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g0da1 b.1.18.9 (A:6-140) Transglutaminase N-terminal domain {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]} Back     information, alignment and structure
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ex0a1 b.1.18.9 (A:7-190) Transglutaminase N-terminal domain {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d2q3za1 b.1.18.9 (A:15-145) Transglutaminase N-terminal domain {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure