Citrus Sinensis ID: 032028

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Secondary Structure (PSIPRED)
ccccccHHHHHHHcccEEEEEEcccccccHHHHHHHcEEEEEccccEEEEEEEEEcEEEEEEccccEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEcccccEEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHccccccEccc
Coil and Loop (DISEMBL)
makiaqgtkvfteggYEKVFQQEFHKLAGEKLLKAYACYistsngpviGTLYISTQrmafcsdyplshysssgqqeWVYFKVVVDldqlrtvnpsanrwnpsekYIHVVTRDGYEFWFMGFISYDKALKTLTEALRrfpdtsgglvpv
Flexible Loop (DISEMBL)
makiaqgtkvfteggyEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRtvnpsanrwnpsekyIHVVTRDGYEFWFMGFISYDKALKTLTEALrrfpdtsgglvpv
Low Complexity Region (SEG)
MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Disordered region (IsUnstruct)
********KVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR************
Disordered Region (DISOPRED)
*AK*AQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQ*****************IHVVTRDGYEFWFMGFISYDKALKTLT****************
Disordered Region (DISEMBL)
MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP*********
Disordered Region (DISPRO)
*AKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q8S8F8	299	GLABRA2 expression modula	yes	no	0.912	0.451	0.566	8e-43
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.912	0.521	0.566	7e-42
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.912	0.579	0.529	2e-38
Q9M063	239	Putative GEM-like protein	no	no	0.817	0.506	0.477	2e-33
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.966	0.525	0.454	3e-33
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.898	0.599	0.458	1e-30
Q9FMW4	219	Putative GEM-like protein	no	no	0.898	0.607	0.443	3e-30
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.898	0.610	0.436	3e-29
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.898	0.633	0.436	6e-29

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  172 bits (435), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 105/136 (77%), Gaps = 1/136 (0%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           M +IAQ TKVF EGGYEK+F+Q F     E+LL ++ACY+STS GPV+G LYIS+ ++A+
Sbjct: 158 MGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAY 217

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
           CSD PLS Y +  Q EW Y+KVV+ L QL+ VNPSA+  NP+EKYI V++ D +EFWFMG
Sbjct: 218 CSDNPLS-YKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMG 276

Query: 121 FISYDKALKTLTEALR 136
           F++YD A+ +L ++L+
Sbjct: 277 FLNYDGAVTSLQDSLQ 292

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 104/136 (76%), Gaps = 1/136 (0%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           +++IAQGTK+  EGGYEKVF+Q F  L  EKLLK YACY+STS GPV+G +Y+ST ++AF
Sbjct: 121 VSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAF 180

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
            SD PLS Y    Q  W Y+KVV+  +QL+ VNPS +R N S+KYI V++ D +EFWFMG
Sbjct: 181 SSDNPLS-YKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMG 239

Query: 121 FISYDKALKTLTEALR 136
           F++Y+ A+K+L EA++
Sbjct: 240 FVTYESAVKSLQEAVQ 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           MA+++QGTK+  EGG E+VFQ+EF  LA EKLL ++ CYIST++GPV G +YIS +R+AF
Sbjct: 89  MARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAF 148

Query: 61  CSDYPLSHYSSSGQQE-WVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119
           CSDY +   SS+G      Y+KVV++ +++ +++ S N   PSE+Y+H+VTRDG+EFWFM
Sbjct: 149 CSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFM 208

Query: 120 GFISYDKALKTLTEAL 135
           GF+SY  A   L +AL
Sbjct: 209 GFVSYIDAFNCLNKAL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 93/136 (68%), Gaps = 15/136 (11%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           M +IAQ TKV  EGGYEK+F+Q F  +  E+L  ++ACY+STS GPV+G LY+ST ++A+
Sbjct: 111 MGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAY 170

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
           CSD  L               VV+ L QL++VNPS +  NP+EKYI V++ D +EFWFMG
Sbjct: 171 CSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMG 215

Query: 121 FISYDKALKTLTEALR 136
           F++Y+ A+ +L + L+
Sbjct: 216 FLNYEGAVTSLQDTLQ 231

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 91/143 (63%)

Query: 3   KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
           K+    K  T+GG+E +F+Q F     E L K +ACY+ST+ GPV GT+Y+S  R+AFCS
Sbjct: 128 KVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCS 187

Query: 63  DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
           D PL   + SGQ+ W Y++VVV L  + TVNP   +  P EKYI + T DG++FWFMGF+
Sbjct: 188 DRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFV 247

Query: 123 SYDKALKTLTEALRRFPDTSGGL 145
           +Y+KA   L  ++  F    G +
Sbjct: 248 NYEKATHHLLTSVSDFQTAHGSV 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 88/133 (66%)

Query: 3   KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
           K++ G ++   GG EK+F++ F    GEKL K Y CY+ST+ GP+ G L+IS+++MAFCS
Sbjct: 80  KLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCS 139

Query: 63  DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
           +  +   S  G    V++KV + L ++  VN S N   PS+KY+ VVT DG++FWFMGF+
Sbjct: 140 ERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFL 199

Query: 123 SYDKALKTLTEAL 135
           SY KA   L +AL
Sbjct: 200 SYQKAFNCLEKAL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 89/133 (66%)

Query: 3   KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
           K++ G ++   GG EK++++ F     EKL KAY CY+ST+ GP+ G L+IS++++AFCS
Sbjct: 81  KLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCS 140

Query: 63  DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
           +  +   S  G+   V++KV + L ++  VN S N   PS+KY+ VVT DG++FWFMGF+
Sbjct: 141 ERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFL 200

Query: 123 SYDKALKTLTEAL 135
           SY KA   L +AL
Sbjct: 201 SYQKAFNCLEQAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 87/133 (65%)

Query: 3   KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
           K++ G K+   GG EK++++ F     EKL KAY CY+ST+ GP+ G L+IS++++AFCS
Sbjct: 81  KLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCS 140

Query: 63  DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
           +  +   S  G    V++KV + L ++  VN S N   PS+KY+ +VT D ++FWFMGF+
Sbjct: 141 ERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFV 200

Query: 123 SYDKALKTLTEAL 135
           SY KA   L +AL
Sbjct: 201 SYQKAFNCLEKAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 86/133 (64%)

Query: 3   KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
           K++ G K+   GG EK++++ F     EKL KAY CY+ST+ G + G L+IS++++AFCS
Sbjct: 73  KLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCS 132

Query: 63  DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
           +  +   S  G    V++KV + L ++  VN S N   PS++Y+ VVT D Y+FWFMGF+
Sbjct: 133 ERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFV 192

Query: 123 SYDKALKTLTEAL 135
           SY KA   L +AL
Sbjct: 193 SYQKAFNCLEKAL 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
300078584	261	hypothetical protein [Jatropha curcas]	0.979	0.555	0.689	1e-55
118489249	223	unknown [Populus trichocarpa x Populus d	0.986	0.654	0.695	3e-55
255548163	225	conserved hypothetical protein [Ricinus	0.979	0.644	0.710	4e-55
224128097	223	predicted protein [Populus trichocarpa]	0.986	0.654	0.689	7e-55
224064396	177	predicted protein [Populus trichocarpa]	0.905	0.757	0.731	7e-54
116789488	292	unknown [Picea sitchensis]	0.925	0.469	0.649	3e-49
326493394	291	predicted protein [Hordeum vulgare subsp	0.939	0.477	0.617	2e-47
357452167	241	GEM-like protein [Medicago truncatula] g	0.986	0.605	0.598	2e-45
351722466	215	uncharacterized protein LOC100306065 [Gl	0.905	0.623	0.637	1e-44
357116515	240	PREDICTED: GEM-like protein 1-like [Brac	0.918	0.566	0.585	2e-43

>gi|300078584|gb|ADJ67196.1| hypothetical protein [Jatropha curcas]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 125/145 (86%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           MA+IAQGTKV TEGG++KVFQQ F  L GEKLL AY CY+STS+GPVIGTLY+S++R+ F
Sbjct: 81  MARIAQGTKVLTEGGHDKVFQQTFGYLHGEKLLNAYVCYLSTSSGPVIGTLYVSSKRVTF 140

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
           CSDYP  +Y+S+GQQ+W+Y+KVVV LD+LRTVNPS++R + SE+YI +VT DG+EFWFMG
Sbjct: 141 CSDYPFCYYASNGQQQWMYYKVVVQLDKLRTVNPSSSRTDSSERYIQIVTTDGHEFWFMG 200

Query: 121 FISYDKALKTLTEALRRFPDTSGGL 145
           FISYDKAL  LTEAL+R   +SGG+
Sbjct: 201 FISYDKALNQLTEALQRSRGSSGGI 225

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489249|gb|ABK96430.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/148 (69%), Positives = 126/148 (85%), Gaps = 2/148 (1%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           MA+I+QGTKV TEGG++KVFQQ F  L GEK L AYACYISTS GPVIGTLYIS++++AF
Sbjct: 74  MARISQGTKVLTEGGHDKVFQQTFEVLPGEKFLNAYACYISTSTGPVIGTLYISSKKVAF 133

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
           CS++P  +YS +GQQ+W+Y+KVVV  D+LRTVNPS+NR +PS+KYI VVT DG+EFWFMG
Sbjct: 134 CSEHPFCYYSPTGQQQWMYYKVVVQPDRLRTVNPSSNRMSPSDKYIQVVTTDGHEFWFMG 193

Query: 121 FISYDKALKTLTEALRRFPDTSGGLVPV 148
           FISYDKALK L EAL++  D+SG  VPV
Sbjct: 194 FISYDKALKQLCEALQQSRDSSG--VPV 219

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548163|ref|XP_002515138.1| conserved hypothetical protein [Ricinus communis] gi|223545618|gb|EEF47122.1| conserved hypothetical protein [Ricinus communis]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 125/145 (86%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           MA+I+QGTKV TEGG++KVFQQ F  L GEKLLKAY CY+STS+GPVIGTLYIST+RMAF
Sbjct: 76  MARISQGTKVLTEGGHDKVFQQAFGVLPGEKLLKAYVCYLSTSSGPVIGTLYISTKRMAF 135

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
            SDYP  +YSS+GQQ+ +Y+KVVV LD+LRT NPS++R NPSEKYI +VT DG++FWFMG
Sbjct: 136 SSDYPFWYYSSTGQQQRMYYKVVVQLDKLRTANPSSSRINPSEKYIQIVTTDGHDFWFMG 195

Query: 121 FISYDKALKTLTEALRRFPDTSGGL 145
           F+SYDKALK LTEAL+   D+SG +
Sbjct: 196 FVSYDKALKQLTEALQCSRDSSGDI 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128097|ref|XP_002320243.1| predicted protein [Populus trichocarpa] gi|222861016|gb|EEE98558.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 102/148 (68%), Positives = 124/148 (83%), Gaps = 2/148 (1%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           MA+I+QGTKV TEGG++KVFQQ F  L GEK L AYACYISTS GPVIGTLYIS++++AF
Sbjct: 74  MARISQGTKVLTEGGHDKVFQQTFEVLPGEKFLNAYACYISTSTGPVIGTLYISSKKVAF 133

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
           CS++P  +YS +GQQ+W+Y+KVVV  D+LR VNPS+NR NPS+KYI VVT DG+EFWFMG
Sbjct: 134 CSEHPFCYYSPTGQQQWMYYKVVVQPDRLRAVNPSSNRMNPSDKYIQVVTTDGHEFWFMG 193

Query: 121 FISYDKALKTLTEALRRFPDTSGGLVPV 148
           FISYDKALK L E L++  D+SG  VPV
Sbjct: 194 FISYDKALKQLCETLQQSRDSSG--VPV 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064396|ref|XP_002301455.1| predicted protein [Populus trichocarpa] gi|222843181|gb|EEE80728.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 116/134 (86%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           MA+IAQGTKV  EGG++KVFQQ F  L GEKLL AYACYISTS GPVIGTLY+S++++AF
Sbjct: 44  MARIAQGTKVLAEGGHDKVFQQTFEVLPGEKLLNAYACYISTSTGPVIGTLYVSSKKVAF 103

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
           CS+YP  +YSS+GQQ+W+Y+KVVV LD+LR VNPS+NR N SEKYI +VT+DG EFWFMG
Sbjct: 104 CSEYPFCYYSSTGQQQWMYYKVVVQLDRLRAVNPSSNRANHSEKYIQIVTKDGQEFWFMG 163

Query: 121 FISYDKALKTLTEA 134
           FISYDKALK L EA
Sbjct: 164 FISYDKALKQLCEA 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789488|gb|ABK25265.1| unknown [Picea sitchensis]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 89/137 (64%), Positives = 109/137 (79%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           M +IAQGTK+ TEGGYE VF++ F  + GEKL KA+ACY+STS GPVIGTLY+ST ++AF
Sbjct: 148 MGRIAQGTKLLTEGGYENVFRRTFETIPGEKLQKAHACYLSTSAGPVIGTLYLSTVKLAF 207

Query: 61  CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
           CSD PL++Y   GQ EW Y+KV V L QL+ VNPSANR NP+EKYI ++T D +EFWFMG
Sbjct: 208 CSDSPLAYYPHPGQTEWSYYKVTVLLSQLKAVNPSANRMNPAEKYIQIITTDDHEFWFMG 267

Query: 121 FISYDKALKTLTEALRR 137
           F++YDKALK L EA R 
Sbjct: 268 FVTYDKALKNLQEASRH 284

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326493394|dbj|BAJ85158.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 116/141 (82%), Gaps = 2/141 (1%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           +A++AQGTKV+ EGG+E+VF Q F  + GE+L KAYACY+STS+GPVIGTLY+ST R+AF
Sbjct: 151 VARLAQGTKVYAEGGHERVFHQVFGGVPGEQLRKAYACYLSTSSGPVIGTLYLSTARLAF 210

Query: 61  CSDYPLSHYSSSGQQ--EWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWF 118
           CSD P+S+++ S  Q  E +Y+KVV+ L+Q+R V+PSA+ W PSE+YI V T D +EFWF
Sbjct: 211 CSDSPVSYHAPSPTQPPEPMYYKVVLPLNQVRAVSPSASMWRPSERYIQVATTDSHEFWF 270

Query: 119 MGFISYDKALKTLTEALRRFP 139
           MGF+SYDKALK L++AL+R P
Sbjct: 271 MGFVSYDKALKHLSDALQRRP 291

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452167|ref|XP_003596360.1| GEM-like protein [Medicago truncatula] gi|355485408|gb|AES66611.1| GEM-like protein [Medicago truncatula] gi|388521459|gb|AFK48791.1| unknown [Medicago truncatula]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTS-NGPVIGTLYISTQRMA 59
           MA++ QGTKV   GG EK+FQQ F   +GEKLLK Y CYIST+ +GPVIGTLYI+T+R+A
Sbjct: 90  MARLVQGTKVIANGGSEKLFQQTFGVFSGEKLLKQYVCYISTTASGPVIGTLYITTKRLA 149

Query: 60  FCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119
           FCSDYP+ H+  S Q + +Y+KVV+ L QL TV P+ NR+N  EKYI + T DGYEF FM
Sbjct: 150 FCSDYPMCHHPFSLQHQCLYYKVVIQLGQLGTVTPATNRFNSREKYIEIFTVDGYEFLFM 209

Query: 120 GFISYDKALKTLTEALRRFPDTSGGLV 146
           GF+SYD+ALKTL E L ++ + S G V
Sbjct: 210 GFVSYDRALKTLNEVLHQYGNHSSGNV 236

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722466|ref|NP_001236989.1| uncharacterized protein LOC100306065 [Glycine max] gi|255627427|gb|ACU14058.1| unknown [Glycine max]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/135 (63%), Positives = 112/135 (82%), Gaps = 1/135 (0%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           +A+I QGTKV T GG + +FQQ F    GEKL+K++ACY+STS GPVIGT+Y+ST+R+AF
Sbjct: 67  VARIVQGTKVLTLGGPDILFQQSFGNFPGEKLIKSFACYLSTSTGPVIGTIYVSTKRVAF 126

Query: 61  CSDYPLSHYSSSGQQ-EWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119
           CSDYPL +Y  S QQ + V++KVV+ LDQL TV+P +NR+NP+EKY+ +VT DGYEF+FM
Sbjct: 127 CSDYPLCNYPLSLQQNQSVHYKVVLQLDQLSTVSPFSNRFNPAEKYMQLVTVDGYEFYFM 186

Query: 120 GFISYDKALKTLTEA 134
           GFI+YDKALKT+ EA
Sbjct: 187 GFIAYDKALKTVREA 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357116515|ref|XP_003560026.1| PREDICTED: GEM-like protein 1-like [Brachypodium distachyon]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 110/140 (78%), Gaps = 4/140 (2%)

Query: 1   MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
           +A++ QGTKV+ EGG+++VF Q F  + GE+L KAYACY+STS GP+IGTLY+ST R+AF
Sbjct: 98  VARLTQGTKVYAEGGHDRVFHQVFGAVPGEQLRKAYACYLSTSTGPIIGTLYLSTARLAF 157

Query: 61  CSDYPLSHYSSSGQQ----EWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEF 116
           CSD PL +Y     Q    E +Y+KVV+ L+QLRTV+PSA+ WN +++YI + T D +EF
Sbjct: 158 CSDAPLPYYHGPTAQAQPPEPMYYKVVLPLNQLRTVSPSASMWNRADRYIQISTVDNHEF 217

Query: 117 WFMGFISYDKALKTLTEALR 136
           WFMGF+SYDKALK L+EAL+
Sbjct: 218 WFMGFVSYDKALKNLSEALQ 237

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.912	0.451	0.566	1.8e-39
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.912	0.521	0.566	2.3e-39
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.912	0.579	0.529	9.2e-36
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.966	0.525	0.454	7.7e-32
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.898	0.599	0.458	5.6e-29
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.898	0.607	0.443	9.1e-29
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.898	0.633	0.436	1.3e-27

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 77/136 (56%), Positives = 105/136 (77%)

Query:     1 MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
             M +IAQ TKVF EGGYEK+F+Q F     E+LL ++ACY+STS GPV+G LYIS+ ++A+
Sbjct:   158 MGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAY 217

Query:    61 CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
             CSD PLS Y +  Q EW Y+KVV+ L QL+ VNPSA+  NP+EKYI V++ D +EFWFMG
Sbjct:   218 CSDNPLS-YKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMG 276

Query:   121 FISYDKALKTLTEALR 136
             F++YD A+ +L ++L+
Sbjct:   277 FLNYDGAVTSLQDSLQ 292

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 77/136 (56%), Positives = 104/136 (76%)

Query:     1 MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
             +++IAQGTK+  EGGYEKVF+Q F  L  EKLLK YACY+STS GPV+G +Y+ST ++AF
Sbjct:   121 VSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAF 180

Query:    61 CSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMG 120
              SD PLS Y    Q  W Y+KVV+  +QL+ VNPS +R N S+KYI V++ D +EFWFMG
Sbjct:   181 SSDNPLS-YKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMG 239

Query:   121 FISYDKALKTLTEALR 136
             F++Y+ A+K+L EA++
Sbjct:   240 FVTYESAVKSLQEAVQ 255

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 72/136 (52%), Positives = 102/136 (75%)

Query:     1 MAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAF 60
             MA+++QGTK+  EGG E+VFQ+EF  LA EKLL ++ CYIST++GPV G +YIS +R+AF
Sbjct:    89 MARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAF 148

Query:    61 CSDYPLSHYSSSGQQEWV-YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM 119
             CSDY +   SS+G      Y+KVV++ +++ +++ S N   PSE+Y+H+VTRDG+EFWFM
Sbjct:   149 CSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFM 208

Query:   120 GFISYDKALKTLTEAL 135
             GF+SY  A   L +AL
Sbjct:   209 GFVSYIDAFNCLNKAL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 65/143 (45%), Positives = 91/143 (63%)

Query:     3 KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
             K+    K  T+GG+E +F+Q F     E L K +ACY+ST+ GPV GT+Y+S  R+AFCS
Sbjct:   128 KVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCS 187

Query:    63 DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
             D PL   + SGQ+ W Y++VVV L  + TVNP   +  P EKYI + T DG++FWFMGF+
Sbjct:   188 DRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFV 247

Query:   123 SYDKALKTLTEALRRFPDTSGGL 145
             +Y+KA   L  ++  F    G +
Sbjct:   248 NYEKATHHLLTSVSDFQTAHGSV 270

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 61/133 (45%), Positives = 88/133 (66%)

Query:     3 KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
             K++ G ++   GG EK+F++ F    GEKL K Y CY+ST+ GP+ G L+IS+++MAFCS
Sbjct:    80 KLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCS 139

Query:    63 DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
             +  +   S  G    V++KV + L ++  VN S N   PS+KY+ VVT DG++FWFMGF+
Sbjct:   140 ERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFL 199

Query:   123 SYDKALKTLTEAL 135
             SY KA   L +AL
Sbjct:   200 SYQKAFNCLEKAL 212

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 59/133 (44%), Positives = 89/133 (66%)

Query:     3 KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
             K++ G ++   GG EK++++ F     EKL KAY CY+ST+ GP+ G L+IS++++AFCS
Sbjct:    81 KLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCS 140

Query:    63 DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
             +  +   S  G+   V++KV + L ++  VN S N   PS+KY+ VVT DG++FWFMGF+
Sbjct:   141 ERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFL 200

Query:   123 SYDKALKTLTEAL 135
             SY KA   L +AL
Sbjct:   201 SYQKAFNCLEQAL 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 58/133 (43%), Positives = 86/133 (64%)

Query:     3 KIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCS 62
             K++ G K+   GG EK++++ F     EKL KAY CY+ST+ G + G L+IS++++AFCS
Sbjct:    73 KLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCS 132

Query:    63 DYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFI 122
             +  +   S  G    V++KV + L ++  VN S N   PS++Y+ VVT D Y+FWFMGF+
Sbjct:   133 ERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMGFV 192

Query:   123 SYDKALKTLTEAL 135
             SY KA   L +AL
Sbjct:   193 SYQKAFNCLEKAL 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      148       148   0.00068  104 3  11 22  0.45    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.71u 0.10s 14.81t   Elapsed:  00:00:02
  Total cpu time:  14.71u 0.10s 14.81t   Elapsed:  00:00:02
  Start:  Fri May 10 12:01:21 2013   End:  Fri May 10 12:01:23 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	3e-80
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	5e-09
pfam02893	60	pfam02893, GRAM, GRAM domain	5e-07
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	2e-06

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  232 bits (594), Expect = 3e-80
 Identities = 76/125 (60%), Positives = 92/125 (73%)

Query: 12  TEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSS 71
            EGG EKVF+Q F    GEKLLKA  CY+ST+ GPV GTL+IST ++AFCSD PLS  S 
Sbjct: 2   QEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTSP 61

Query: 72  SGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTL 131
           SGQ    Y+KVV+ L +++ VNPS N  NPSEKYI +VT DG+EFWFMGF++Y KA K L
Sbjct: 62  SGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKYL 121

Query: 132 TEALR 136
            +AL 
Sbjct: 122 QQALS 126

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 49.1 bits (118), Expect = 5e-09
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 27 LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDL 86
             EKL+  Y+CY+S   GPV G LYIS  R+ F S+ P               KVV+ L
Sbjct: 3  PEEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGK-----------LTKVVIPL 50

Query: 87 DQLRTVNPS 95
            +  +  S
Sbjct: 51 ADITRIEKS 59

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 43.8 bits (104), Expect = 5e-07
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 27 LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSD 63
             EKL+  Y+CY+     PV G LY++  R+ F SD
Sbjct: 2  PPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSD 38

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 19/109 (17%)

Query: 30  EKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVV---DL 86
           EK    Y C      GPV GTLY++  R+ F S                  ++ V    +
Sbjct: 2   EKKDVTYICP--FHVGPVEGTLYLTNYRLYFKSKER-----------DSPTELDVPLGVI 48

Query: 87  DQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 135
            ++  V  S++  N     + +  +D        F   D + + + E L
Sbjct: 49  SRVEKVGGSSSGENS--YGLEITCKD-MRNLRFAFKQEDHSRRDIFELL 94

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.57
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.45
KOG1032	590	consensus Uncharacterized conserved protein, conta	97.69
PF14470	96	bPH_3: Bacterial PH domain	97.31
KOG4347	671	consensus GTPase-activating protein VRP [General f	96.07
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	95.52
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	89.7
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	85.74
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	85.58
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	82.73
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	80.11
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	80.04

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.57  E-value=3.1e-15  Score=100.08  Aligned_cols=66  Identities=29%  Similarity=0.506  Sum_probs=46.4

Q ss_pred             eeeeccCCCccccceeeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecC
Q 032028           19 VFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNP   94 (148)
Q Consensus        19 iFkq~F~~~~~EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnp   94 (148)
                      -|++.|..+++|+|...|.|+|.++.+|+.|.||||+.++||+|+.+-.-          -++++|||..|..|+.
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~----------~~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSK----------TCKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-----------E-EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCc----------eEEEEEEhHheeEEEE
Confidence            58999999999999999999999988999999999999999999876651          1699999999999865

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.45  E-value=1.7e-13  Score=89.65  Aligned_cols=58  Identities=43%  Similarity=0.733  Sum_probs=51.3

Q ss_pred             CCccccceeeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEE-EEEEeccccceecCC
Q 032028           26 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYF-KVVVDLDQLRTVNPS   95 (148)
Q Consensus        26 ~~~~EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~Y-KVvIPL~~ik~Vnps   95 (148)
                      .+++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-.           .. +++|||+.|.+|++.
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~-----------~~~~~~ipl~~I~~i~k~   60 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGK-----------LTPKVVIPLADITRIEKS   60 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCC-----------eeEEEEEEHHHeeEEEEC
Confidence            4689999999999999 5599999999999999999987665           23 999999999999763

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=97.69  E-value=7e-05  Score=69.75  Aligned_cols=105  Identities=24%  Similarity=0.350  Sum_probs=87.5

Q ss_pred             CCccccceeeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCe
Q 032028           26 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKY  105 (148)
Q Consensus        26 ~~~~EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKY  105 (148)
                      +.++|+|+..+.|+|+-+ =+.-|.+|||..++||-|.--=.           .-|||||++.|.-+....... -.+.-
T Consensus       117 ~~~~~~l~~~~~cal~re-illQGrmyis~~~icF~s~i~gw-----------~~~~vIpf~eI~~ikk~~tag-~fpn~  183 (590)
T KOG1032|consen  117 VPDPEILLTDYSCALQRE-ILLQGRMYISEEHICFNSNIFGW-----------ETKVVIPFDEITLIKKTKTAG-IFPNA  183 (590)
T ss_pred             CCCcceeeeecchhhccc-cccccccccccceeeecccccCc-----------cceeEEeeeeeeeeehhhhcc-CCCcc
Confidence            678999999999999998 67899999999999999975443           578999999999998865544 67788


Q ss_pred             EEEEEecCCeeeeeeeccHHHHHHHHHHHHhcCCCCCCC
Q 032028          106 IHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGG  144 (148)
Q Consensus       106 IqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~~~~~~s~~  144 (148)
                      |+|- ...-.+-|.+|+..|.+++.....+....+++++
T Consensus       184 i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s  221 (590)
T KOG1032|consen  184 IEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGS  221 (590)
T ss_pred             eEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCC
Confidence            9888 5556677899999999999877666666666654

>PF14470 bPH_3: Bacterial PH domain

Probab=97.31  E-value=0.0053  Score=42.06  Aligned_cols=94  Identities=15%  Similarity=0.102  Sum_probs=68.1

Q ss_pred             CccccceeeeeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeE
Q 032028           27 LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI  106 (148)
Q Consensus        27 ~~~EkLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYI  106 (148)
                      .+||+..-...|.+-...+.-.|+|+++++|+-|++-.++.      .    .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            58999999999998876788899999999999999885442      1    34589999999999876433   44679


Q ss_pred             EEEEecCCeeeeeeeccHHHHHHHHHHHHh
Q 032028          107 HVVTRDGYEFWFMGFISYDKALKTLTEALR  136 (148)
Q Consensus       107 qIvTvD~~eFWFMGFvnY~kA~k~L~~a~~  136 (148)
                      .|.| ++..+=| +-+.-+. ++-+-+.++
T Consensus        69 ~i~~-~~~~~~i-~~i~k~~-~~~~~~~i~   95 (96)
T PF14470_consen   69 TIET-NGEKIKI-DNIQKGD-VKEFYEYIK   95 (96)
T ss_pred             EEEE-CCEEEEE-EEcCHHH-HHHHHHHHh
Confidence            9999 5555544 4443333 344444443

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=96.07  E-value=0.0065  Score=57.91  Aligned_cols=100  Identities=23%  Similarity=0.208  Sum_probs=80.8

Q ss_pred             eccCCCccccceeeeeeeeeecCc--ceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCC
Q 032028           22 QEFHKLAGEKLLKAYACYISTSNG--PVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRW   99 (148)
Q Consensus        22 q~F~~~~~EkLlka~~CYLSTs~G--PvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~   99 (148)
                      -.|..+  |+|.-.-.|=|.|..-  -..|.||+||..+||.||-+=.            -.+++||.-|+.|.... ..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~------------c~~~~Pl~~vr~ve~~~-~s   78 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL------------CSFITPLLAVRSVERLD-DS   78 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc------------ceEeeehhhhhhhhccC-cc
Confidence            456666  9999999999999766  4789999999999999997654            46999999999997755 33


Q ss_pred             CCCCCeEEEEEecCCeeeeeeeccHHHHHHHHHHHHh
Q 032028          100 NPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR  136 (148)
Q Consensus       100 ~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~  136 (148)
                      +--+.=|.+.|..+-.|-|-|++..++.+.-+..-..
T Consensus        79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~~~  115 (671)
T KOG4347|consen   79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLHLPPA  115 (671)
T ss_pred             ccchhhhHHhhcCcceEEecchhhHHHHHHHHhchHh
Confidence            3334457889999999999999999998876654433

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=95.52  E-value=0.036  Score=39.58  Aligned_cols=86  Identities=20%  Similarity=0.273  Sum_probs=57.1

Q ss_pred             cceeeeeeeeeecCcceeeEEEEeeceEEEecCCceee---eCCC-CCeeeeEEEEEEeccccceecCCCCCCCCCCCeE
Q 032028           31 KLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSH---YSSS-GQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI  106 (148)
Q Consensus        31 kLlka~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~---~~p~-g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYI  106 (148)
                      |.+-++.|-+=|..+-+.|+|.|++..+.|..|..-..   .... .......--..+|+++|+.|-+  -+....+..|
T Consensus         1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~--RRyllr~~Al   78 (106)
T PF14844_consen    1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHK--RRYLLRDTAL   78 (106)
T ss_dssp             --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEE--EEETTEEEEE
T ss_pred             CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHH--HHhcCcceEE
Confidence            34567899999999999999999999999998811100   0000 0011112335689999999987  4555668899


Q ss_pred             EEEEecCCeeee
Q 032028          107 HVVTRDGYEFWF  118 (148)
Q Consensus       107 qIvTvD~~eFWF  118 (148)
                      ||.+.||.-+.|
T Consensus        79 EiF~~dg~s~f~   90 (106)
T PF14844_consen   79 EIFFSDGRSYFF   90 (106)
T ss_dssp             EEEETTS-EEEE
T ss_pred             EEEEcCCcEEEE
Confidence            999999998754

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=89.70  E-value=2.8  Score=27.25  Aligned_cols=64  Identities=23%  Similarity=0.258  Sum_probs=45.7

Q ss_pred             ceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCC----CCCCCCeEEEEEecCCeeeeee
Q 032028           56 QRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANR----WNPSEKYIHVVTRDGYEFWFMG  120 (148)
Q Consensus        56 ~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~----~~p~eKYIqIvTvD~~eFWFMG  120 (148)
                      +|.++-.+.-|.+..++.+......+-+|||..+ .|.+..+.    ..+.+..++|.+.++-.|+|..
T Consensus        19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~   86 (104)
T PF00169_consen   19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA   86 (104)
T ss_dssp             EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred             EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence            4455555555655555554455578889999999 66666665    3688899999999987888764

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=85.74  E-value=2.5  Score=37.86  Aligned_cols=85  Identities=18%  Similarity=0.357  Sum_probs=68.5

Q ss_pred             ccCCCccccceeee--eeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCC
Q 032028           23 EFHKLAGEKLLKAY--ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWN  100 (148)
Q Consensus        23 ~F~~~~~EkLlka~--~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~  100 (148)
                      ..-+.|+|++....  .+-||..-|=+ |+++||+-|+..|+|---.            |.|.||.=+|+++.-.+.+- 
T Consensus       148 ~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne~------------fNVSiPylqi~~i~ir~SKf-  213 (339)
T PF07289_consen  148 QLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNES------------FNVSIPYLQIKSIRIRDSKF-  213 (339)
T ss_pred             eEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCcc------------ccccchHhhheeeeeecccc-
Confidence            34567888887766  47899998887 9999999999999997766            88999999999998766655 


Q ss_pred             CCCCeEEEEEecCCeeeeeeecc
Q 032028          101 PSEKYIHVVTRDGYEFWFMGFIS  123 (148)
Q Consensus       101 p~eKYIqIvTvD~~eFWFMGFvn  123 (148)
                        -+.+-|-|....-=.-.||..
T Consensus       214 --G~aLVieT~~~sGgYVLGFRv  234 (339)
T PF07289_consen  214 --GPALVIETSESSGGYVLGFRV  234 (339)
T ss_pred             --ceEEEEEEeccCCcEEEEEEc
Confidence              345777777766667789974

It consists of eukaryotic proteins of around 375 residues in length.

>smart00683 DM16 Repeats in sea squirt COS41

Probab=85.58  E-value=1.6  Score=29.63  Aligned_cols=39  Identities=26%  Similarity=0.494  Sum_probs=31.9

Q ss_pred             ecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceec
Q 032028           42 TSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVN   93 (148)
Q Consensus        42 Ts~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vn   93 (148)
                      ...| --|+|++++-|+...|+..-.            +.|.||.-+|..++
T Consensus        15 gn~G-~~G~l~VTNlRiiW~s~~~~~------------~NlSIgy~~i~~i~   53 (55)
T smart00683       15 GNNG-DLGVFFVTNLRLVWHSDTNPR------------FNISVGYLQITNVR   53 (55)
T ss_pred             CCCC-CeeEEEEEeeEEEEEeCCCCc------------eEEEEcceeEEEEE
Confidence            3456 359999999999999997654            78999999888774

4, worm R01H10.6, fly CG1126 etc.

>smart00233 PH Pleckstrin homology domain

Probab=82.73  E-value=8.3  Score=24.16  Aligned_cols=43  Identities=16%  Similarity=0.132  Sum_probs=30.3

Q ss_pred             eEEEEEEeccccceecCCCCCC-CCCCCeEEEEEecCCeeeeeee
Q 032028           78 VYFKVVVDLDQLRTVNPSANRW-NPSEKYIHVVTRDGYEFWFMGF  121 (148)
Q Consensus        78 ~~YKVvIPL~~ik~Vnps~n~~-~p~eKYIqIvTvD~~eFWFMGF  121 (148)
                      ....-.|||+.+ .|....+.. .+....+.|.+.++..++|..-
T Consensus        42 ~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~   85 (102)
T smart00233       42 YKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE   85 (102)
T ss_pred             CCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC
Confidence            466778999999 444433332 4567888888888878888763

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=80.11  E-value=7.8  Score=27.41  Aligned_cols=54  Identities=19%  Similarity=0.384  Sum_probs=34.6

Q ss_pred             eeeEEEEeece--EEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecC
Q 032028           47 VIGTLYISTQR--MAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDG  113 (148)
Q Consensus        47 vaG~LyiSt~k--vAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~  113 (148)
                      +.|+|+|++.|  +...-+.      .++. .    .|.||+..|+.-..  +.+..+.==++|+-.|+
T Consensus        12 ~~G~L~l~~d~~~~~W~~~~------~~~~-~----~v~i~~~~I~~lq~--Sp~~s~Kv~Lki~~~~~   67 (79)
T PF08567_consen   12 KDGTLTLTEDRKPLEWTPKA------SDGP-S----TVSIPLNDIKNLQQ--SPEGSPKVMLKIVLKDD   67 (79)
T ss_dssp             EEEEEEEETTCSSEEEEECC------SSSS-S----EEEEETTTEEEEEE----TTSSTEEEEEEETTS
T ss_pred             CCcEEEEecCCceEEEeecC------CCCC-c----eEEEEHHHhhhhcc--CCCCCcceEEEEEEecC
Confidence            35999999887  6664331      1111 1    59999999998765  33434445678887766

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=80.04  E-value=2.1  Score=31.02  Aligned_cols=48  Identities=23%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             ceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCC
Q 032028           46 PVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEK  104 (148)
Q Consensus        46 PvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eK  104 (148)
                      =-.|+||+||.|+.+--|....           -.-+.|||+.|..+.-....-+.+.|
T Consensus        35 ~q~G~l~LTsHRliw~d~~~~~-----------~~s~~l~L~~i~~~e~~~gf~~sSpK   82 (89)
T PF11605_consen   35 FQNGRLYLTSHRLIWVDDSDPS-----------KHSIALPLSLISHIEYSAGFLKSSPK   82 (89)
T ss_dssp             -SCEEEEEESSEEEEEESSGHC-----------HH-EEEEGGGEEEEEEE-STTSSS-E
T ss_pred             ccCCEEEEEeeEEEEEcCCCCc-----------eeEEEEEchHeEEEEEEccccCCCCe
Confidence            3489999999999997554332           13488999999998665555555555

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	95.96
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	95.3
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	92.42
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	87.48
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	81.21

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=95.96  E-value=0.046  Score=49.36  Aligned_cols=101  Identities=20%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             cCCCccccceeeeee--eeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCC
Q 032028           24 FHKLAGEKLLKAYAC--YISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP  101 (148)
Q Consensus        24 F~~~~~EkLlka~~C--YLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p  101 (148)
                      |...|||.++..-.-  |+..-.|++.|+||||+.|+.|.+...=       .    ...+-|||..|..|.........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~-------~----~~~~~iPL~~I~~vek~~~~s~~   75 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-------P----PFVLDASLGVINRVEKIGGASSR   75 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-------S----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCC-------c----cEEEEeeccceEEEEEcCCCCcC
Confidence            567899999865211  4455568999999999999999985211       0    24578999998888763321111


Q ss_pred             --CCCeEEEEEecCCeeeeeeeccHHHHHHHHHHHHh
Q 032028          102 --SEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR  136 (148)
Q Consensus       102 --~eKYIqIvTvD~~eFWFMGFvnY~kA~k~L~~a~~  136 (148)
                        ....|+|..-|-. .+=.+|-.=+...+.+-++|.
T Consensus        76 ~~~~~~l~I~CKDfr-~~~f~f~~~~~~~~~v~~~L~  111 (528)
T 1zsq_A           76 GENSYGLETVCKDIR-NLRFAHKPEGRTRRSIFENLM  111 (528)
T ss_dssp             STTCSEEEEEETTTE-EEEEECCGGGCCHHHHHHHHH
T ss_pred             CCCCceEEEEccCCe-EEEEEecCchHHHHHHHHHHH
Confidence              1225777777654 444456543332333334444

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=95.30  E-value=0.088  Score=48.92  Aligned_cols=90  Identities=21%  Similarity=0.155  Sum_probs=57.7

Q ss_pred             ccCCCccccceeeee-e-eeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCC
Q 032028           23 EFHKLAGEKLLKAYA-C-YISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWN  100 (148)
Q Consensus        23 ~F~~~~~EkLlka~~-C-YLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~  100 (148)
                      -|...|||.++..-. . |+..-.|++.|+||||+.|+.|.+...=       .    .+.+-|||..|..|.+......
T Consensus        78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~-------~----~~~~~IPL~~I~~Iekv~g~s~  146 (657)
T 1lw3_A           78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-------P----PFVLDASLGVINRVEKIGGASS  146 (657)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-------S----CEEEEEEGGGEEEEEEECCTTC
T ss_pred             CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCC-------c----ceEEEecccceEEEEecCCCcc
Confidence            467899999995421 1 3444458999999999999999985211       1    2456799999988876432211


Q ss_pred             CC--CCeEEEEEecCCeeeeeeeccH
Q 032028          101 PS--EKYIHVVTRDGYEFWFMGFISY  124 (148)
Q Consensus       101 p~--eKYIqIvTvD~~eFWFMGFvnY  124 (148)
                      ..  .-.|+|..-|-. .+=.+|-.=
T Consensus       147 ~g~~~~~l~I~CKDfR-~~~f~f~~~  171 (657)
T 1lw3_A          147 RGENSYGLETVCKDIR-NLRFAHKPE  171 (657)
T ss_dssp             CSTTCSEEEEEETTTE-EEEEECCGG
T ss_pred             cCCCCceEEEEecCCc-EEEEEeCCc
Confidence            11  124777776654 444456533

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=92.42  E-value=0.12  Score=38.90  Aligned_cols=68  Identities=21%  Similarity=0.152  Sum_probs=45.6

Q ss_pred             Cccccceee-eeeeeee---cCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCC
Q 032028           27 LAGEKLLKA-YACYIST---SNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPS  102 (148)
Q Consensus        27 ~~~EkLlka-~~CYLST---s~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~  102 (148)
                      .+||.++.. -.+-|+-   .+.--.|+||+||.||.|-.+.. .           ..-+.|||..|+.+...+..-..+
T Consensus        14 ~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~-~-----------~~s~~lpl~~v~~~e~~~~~f~~s   81 (140)
T 2hth_B           14 EINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKN-H-----------ECCMAILLSQIVFIEEQAAGIGKS   81 (140)
T ss_dssp             CTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTC-C-----------SCCEEEEGGGEEEEEEECCTTSSC
T ss_pred             CCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCC-C-----------ceEEEEEhHHeeeeeeeccccccC
Confidence            455555432 2333332   24568899999999999965432 1           144889999999998877776666


Q ss_pred             CCeE
Q 032028          103 EKYI  106 (148)
Q Consensus       103 eKYI  106 (148)
                      .|++
T Consensus        82 ~Ki~   85 (140)
T 2hth_B           82 AKIV   85 (140)
T ss_dssp             CEEE
T ss_pred             ceEE
Confidence            6765

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=87.48  E-value=3.7  Score=36.96  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=44.3

Q ss_pred             eeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeee
Q 032028           40 ISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFM  119 (148)
Q Consensus        40 LSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFM  119 (148)
                      ++.+.+|+.|+||||+.|+.|.+|..        +      .+.||+..|.+|.......  ...-|+|..-|-.-+=| 
T Consensus        18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~------e~wi~~~~I~~VeK~~~~~--~~~~l~I~CKDfr~~~f-   80 (512)
T 2yf0_A           18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------K------ETWILHHHIASVEKLALTT--SGCPLVIQCKNFRTVHF-   80 (512)
T ss_dssp             ------CCEEEEEECSSEEEEEESSS--------C------EEEEEGGGEEEEEECCCBT--TBEEEEEEETTSCEEEE-
T ss_pred             cCCCCCceeEEEEEECCEEEEeCCCC--------C------ceEecccceeEEEEecCCC--CCceEEEEecCCcEEEE-
Confidence            44567999999999999999999532        1      2567888888886532211  22457888777665554 


Q ss_pred             eeccHHHHH
Q 032028          120 GFISYDKAL  128 (148)
Q Consensus       120 GFvnY~kA~  128 (148)
                      .|-.=+.+.
T Consensus        81 ~f~~~~~~~   89 (512)
T 2yf0_A           81 IVPRERDCH   89 (512)
T ss_dssp             EESCHHHHH
T ss_pred             EeCChHHHH
Confidence            465544443

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=81.21  E-value=0.82  Score=34.61  Aligned_cols=69  Identities=23%  Similarity=0.269  Sum_probs=45.4

Q ss_pred             Cccccceee---eeeeeee--cCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCC
Q 032028           27 LAGEKLLKA---YACYIST--SNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP  101 (148)
Q Consensus        27 ~~~EkLlka---~~CYLST--s~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p  101 (148)
                      .|||.++..   --+|...  ..+--.|+||+||.||.|-.+.+=.           -.-+.+||..|+.+...+..-.+
T Consensus        26 ~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~-----------~~SfslPL~~v~~~e~~~~~fg~   94 (145)
T 2cay_A           26 REGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPT-----------QNSLGLELDDLAYVNYSSGFLTR   94 (145)
T ss_dssp             CTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHH-----------HHCEEEEGGGEEEEEEECSSSSS
T ss_pred             CCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCc-----------ceEEEeEhHheeeeeEEcCcccc
Confidence            566666533   3344443  2577889999999999996543200           13378999999988887766655


Q ss_pred             CCCeE
Q 032028          102 SEKYI  106 (148)
Q Consensus       102 ~eKYI  106 (148)
                      +-|=+
T Consensus        95 s~Ki~   99 (145)
T 2cay_A           95 SPRLI   99 (145)
T ss_dssp             SCEEE
T ss_pred             CceEE
Confidence            54433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	97.67
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	95.62
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	90.44
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	83.88

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00012  Score=52.42  Aligned_cols=101  Identities=21%  Similarity=0.238  Sum_probs=63.1

Q ss_pred             CCccccceee--eeeeeeecCcceeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCC--C
Q 032028           26 KLAGEKLLKA--YACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWN--P  101 (148)
Q Consensus        26 ~~~~EkLlka--~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~--p  101 (148)
                      ..|||.+.-.  -.=|+..-.||+-|+||+|+-|+.|-++..-       .    .+.+-|||..|..|........  .
T Consensus         5 llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~~-------~----~~~~~ipl~~I~~v~k~~~~~~~~~   73 (125)
T d1zsqa1           5 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-------P----PFVLDASLGVINRVEKIGGASSRGE   73 (125)
T ss_dssp             CCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-------S----CEEEEEEGGGEEEEEEECCTTCCST
T ss_pred             cCCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCCC-------c----cEEEEeccceeeeeeecccccccCC
Confidence            4578877532  2234555579999999999999999764211       1    1345699999999976443332  2


Q ss_pred             CCCeEEEEEecCCeeeeeeec-cHHHHHHHHHHHHhcCC
Q 032028          102 SEKYIHVVTRDGYEFWFMGFI-SYDKALKTLTEALRRFP  139 (148)
Q Consensus       102 ~eKYIqIvTvD~~eFWFMGFv-nY~kA~k~L~~a~~~~~  139 (148)
                      ..-.|+|+.-|.--+=|. |. .-+.+ +.+.++|++..
T Consensus        74 ~~~~L~I~CKDfr~~~f~-f~~e~~~~-~~v~~~L~~~a  110 (125)
T d1zsqa1          74 NSYGLETVCKDIRNLRFA-HKPEGRTR-RSIFENLMKYA  110 (125)
T ss_dssp             TCSEEEEEETTTEEEEEE-CCGGGCCH-HHHHHHHHHHS
T ss_pred             ccccEEEEeccCeEEEEE-EcCCccHH-HHHHHHHHHhC
Confidence            234699999887655553 32 21222 45666666543

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.025  Score=39.93  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=56.3

Q ss_pred             eeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEecCCeeeeeeeccHHH
Q 032028           47 VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDK  126 (148)
Q Consensus        47 vaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY~k  126 (148)
                      ..|+|||++.+++|..+.+=            .-+|.+++..|+.-..+  .+..+.--++|+.-|+..|-|- |.|+.-
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~------------~~~v~~~~~~I~~~q~S--pe~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKD------------RFTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCS------------SCSEEEETTTEEEEEEC--CTTCSSEEEEEEETTSCEEEEE-ECCTTT
T ss_pred             CCcEEEEEcCeEEEEcCCCC------------CceEEEEhhhhhceecC--CCCcccceeEEEEeCCCeEEEE-ECChHH
Confidence            67999999999999765421            13488999999876553  3444555699999999888774 888844


Q ss_pred             H-------HHHHHHHHhcCCC
Q 032028          127 A-------LKTLTEALRRFPD  140 (148)
Q Consensus       127 A-------~k~L~~a~~~~~~  140 (148)
                      |       =..||++|+..++
T Consensus        85 ~~~~Rd~iK~~Lq~~i~~~k~  105 (108)
T d2rnrb1          85 AVKERDAVKDLLQQLLPKFKR  105 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            3       3356677766554

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.51  Score=32.29  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             eeeeeeeecCcceeeEEEEeeceEEEecCCceeeeC-CCC--CeeeeEEEEEEeccccceecCCCCCCCCCCCeEEEEEe
Q 032028           35 AYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYS-SSG--QQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTR  111 (148)
Q Consensus        35 a~~CYLSTs~GPvaG~LyiSt~kvAFcSdrpl~~~~-p~g--~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eKYIqIvTv  111 (148)
                      +-.|-|=|.-.=++|.|.|++..+-|-+|..-.-.. .+.  ..........+|+++|+.|-.  -+....+-.|||-+.
T Consensus         6 s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~--Rr~ll~~~alEif~~   83 (110)
T d1t77a2           6 STPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFS--RRYLLQNTALEIFMA   83 (110)
T ss_dssp             EEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEE--EEETTEEEEEEEEET
T ss_pred             EeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHh--hhhcCCceEEEEEEc
Confidence            457999999999999999999999999886432110 000  000011223599999999976  455567788999999


Q ss_pred             cCCeeeeeeeccHH
Q 032028          112 DGYEFWFMGFISYD  125 (148)
Q Consensus       112 D~~eFWFMGFvnY~  125 (148)
                      ||.-+.|. |-+-+
T Consensus        84 ~~~s~~~~-F~~~~   96 (110)
T d1t77a2          84 NRVAVMFN-FPDPA   96 (110)
T ss_dssp             TSCEEEEE-CSSHH
T ss_pred             CCcEEEEE-eCCHH
Confidence            99987665 77743

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.88  E-value=0.32  Score=34.59  Aligned_cols=47  Identities=23%  Similarity=0.343  Sum_probs=33.7

Q ss_pred             eeeEEEEeeceEEEecCCceeeeCCCCCeeeeEEEEEEeccccceecCCCCCCCCCCC
Q 032028           47 VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEK  104 (148)
Q Consensus        47 vaG~LyiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~~ik~Vnps~n~~~p~eK  104 (148)
                      -.|+||+||.||.|-.+-.-.           ..-+.|||..|..+.-++.--..+.|
T Consensus        43 ~~G~l~LTshRiI~v~~~~~~-----------~~S~slpL~~i~~~e~~~~~~~ss~K   89 (130)
T d2caya1          43 QRGRIFLTSQRIIYIDDAKPT-----------QNSLGLELDDLAYVNYSSGFLTRSPR   89 (130)
T ss_dssp             SSEEEEEESSEEEEEESSCHH-----------HHCEEEEGGGEEEEEEECSSSSSSCE
T ss_pred             cCceEEEEeeEEEEecCCCCc-----------eeEEEeEhhheeEeEEEccccCCCCe
Confidence            479999999999998653211           12277888888888776666666655