Citrus Sinensis ID: 032043


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MDSLFSKLQNKEDSKSATAHNENPTKEHHQPSNAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSSVPSGGGGDEKSGGGYGDYLKTAQGFLNK
ccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
ccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcc
mdslfsklqnkedsksatahnenptkehhqpsnaELMASAKCVAEAAKAtfskesdkvdKAKVAGAAENLVAAGskygnleenkyvdKAKDYLhqyhsshstaqtdtsghsaqgghdsssvpsggggdeksgggygdYLKTAQGFLNK
mdslfsklqnkedsksatahnenptkehhqpsNAELMASAKCVAEAAKAtfskesdkvdKAKVAGAAENlvaagskygnlEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSSVPSGGGGDEKSGGGYGDYLKTAQGFLNK
MDSLFSKLQNKEDSKSATAHNENPTKEHHQPSNAELMasakcvaeaakaTFSKESdkvdkakvagaaENLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQgghdsssvpsggggdeksgggygdyLKTAQGFLNK
**********************************************************************V*****Y*******YV*****Y********************************************************
*****************************************CVA*******************AGAAENLVAAGSKYGNLEENKYVDKAKD************************************************KTAQGFL**
********************************NAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLHQYH********************************KSGGGYGDYLKTAQGFLNK
*******************************************************DKVDKAKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLHQYH**************************************G*Y*KTAQGFLNK
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MDSLFSKLQNKEDSKSATAHNENPTKEHHQPSNAELMASAKCVAEAAKATFSKESDKVDKAKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSSVPSGGGGDEKSGGGYGDYLKTAQGFLNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
359386144148 HAP3-like protein [Citrus sinensis] 1.0 1.0 0.986 1e-77
225423539140 PREDICTED: uncharacterized protein LOC10 0.831 0.878 0.595 1e-26
224112154140 predicted protein [Populus trichocarpa] 0.783 0.828 0.468 1e-19
224098946139 predicted protein [Populus trichocarpa] 0.871 0.928 0.5 3e-18
383932370124 nodulin-like protein [Gossypium hirsutum 0.743 0.887 0.491 1e-16
15227642187 nodulin-related protein 1 [Arabidopsis t 0.783 0.620 0.496 1e-16
449434740143 PREDICTED: uncharacterized protein LOC10 0.851 0.881 0.403 1e-16
18394049155 uncharacterized protein [Arabidopsis tha 0.777 0.741 0.504 1e-15
21553546155 unknown [Arabidopsis thaliana] 0.777 0.741 0.504 2e-15
193872588177 ST6-66 [Eutrema halophilum] 0.777 0.649 0.422 7e-15
>gi|359386144|gb|AEV43361.1| HAP3-like protein [Citrus sinensis] Back     alignment and taxonomy information
 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/148 (98%), Positives = 147/148 (99%)

Query: 1   MDSLFSKLQNKEDSKSATAHNENPTKEHHQPSNAELMASAKCVAEAAKATFSKESDKVDK 60
           MDSLFSKLQNKEDSKSAT+HNENPTKEHHQPSNAELMASAKCVAEAAKATFSKESDKVDK
Sbjct: 1   MDSLFSKLQNKEDSKSATSHNENPTKEHHQPSNAELMASAKCVAEAAKATFSKESDKVDK 60

Query: 61  AKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGHDSSS 120
           AKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGG DSSS
Sbjct: 61  AKVAGAAENLVAAGSKYGNLEENKYVDKAKDYLHQYHSSHSTAQTDTSGHSAQGGRDSSS 120

Query: 121 VPSGGGGDEKSGGGYGDYLKTAQGFLNK 148
           VPSGGGGDEKSGGGYGDYLKTAQGFLNK
Sbjct: 121 VPSGGGGDEKSGGGYGDYLKTAQGFLNK 148




Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423539|ref|XP_002271911.1| PREDICTED: uncharacterized protein LOC100262861 [Vitis vinifera] gi|147815438|emb|CAN63832.1| hypothetical protein VITISV_009130 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112154|ref|XP_002316101.1| predicted protein [Populus trichocarpa] gi|118481511|gb|ABK92698.1| unknown [Populus trichocarpa] gi|118484413|gb|ABK94083.1| unknown [Populus trichocarpa] gi|222865141|gb|EEF02272.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224098946|ref|XP_002311328.1| predicted protein [Populus trichocarpa] gi|222851148|gb|EEE88695.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|383932370|gb|AFH57282.1| nodulin-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|15227642|ref|NP_178443.1| nodulin-related protein 1 [Arabidopsis thaliana] gi|4335755|gb|AAD17432.1| unknown protein [Arabidopsis thaliana] gi|22531277|gb|AAM97142.1| unknown protein [Arabidopsis thaliana] gi|330250606|gb|AEC05700.1| nodulin-related protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449434740|ref|XP_004135154.1| PREDICTED: uncharacterized protein LOC101213972 [Cucumis sativus] gi|449530179|ref|XP_004172073.1| PREDICTED: uncharacterized protein LOC101226038 [Cucumis sativus] Back     alignment and taxonomy information
>gi|18394049|ref|NP_563934.1| uncharacterized protein [Arabidopsis thaliana] gi|334182563|ref|NP_001184989.1| uncharacterized protein [Arabidopsis thaliana] gi|334182565|ref|NP_001184990.1| uncharacterized protein [Arabidopsis thaliana] gi|5080769|gb|AAD39279.1|AC007576_2 Unknown protein [Arabidopsis thaliana] gi|8778391|gb|AAF79399.1|AC068197_9 F16A14.14 [Arabidopsis thaliana] gi|15010678|gb|AAK73998.1| At1g13930/F16A14.27 [Arabidopsis thaliana] gi|16323298|gb|AAL15404.1| At1g13930/F16A14.27 [Arabidopsis thaliana] gi|332190963|gb|AEE29084.1| uncharacterized protein [Arabidopsis thaliana] gi|332190964|gb|AEE29085.1| uncharacterized protein [Arabidopsis thaliana] gi|332190965|gb|AEE29086.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553546|gb|AAM62639.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|193872588|gb|ACF23022.1| ST6-66 [Eutrema halophilum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
TAIR|locus:2063788187 NRP1 "AT2G03440" [Arabidopsis 0.594 0.470 0.311 5.3e-08
TAIR|locus:2035837155 AT1G13930 "AT1G13930" [Arabido 0.858 0.819 0.261 5.5e-06
TAIR|locus:2063788 NRP1 "AT2G03440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 29/93 (31%), Positives = 44/93 (47%)

Query:    21 NENPTKEHHQPSNAELMXXXXXXXXXXXXTFSKESXXXXXXXXXXXXENLVAAGSKYGNL 80
             N +PT  H   +NAELM                ES             +++ A S+YG L
Sbjct:    54 NTDPTT-HRPATNAELMASAKIVAEAAQAAARHESDKLDKAKVAGATADILDAASRYGKL 112

Query:    81 EEN----KYVDKAKDYLHQYHSSHSTAQTDTSG 109
             +E     +Y++KA+ YLH+Y +SHS + T  +G
Sbjct:   113 DEKSGVGQYLEKAEQYLHKYETSHSHSSTGGTG 145




GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0009617 "response to bacterium" evidence=IEP
GO:0009408 "response to heat" evidence=IEP;IMP
GO:0009409 "response to cold" evidence=IEP
GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP
TAIR|locus:2035837 AT1G13930 "AT1G13930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00