Citrus Sinensis ID: 032054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MNKGAGSGPTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSGHRTTQNSQQ
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mnkgagsgpTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVarvndppvrnsqESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHyyssghrttqnsqq
Flexible Loop (DISEMBL)
mnkgagsgpTAAAAAAAAQKQKTLMQRVETDIASIVDNfsqlvnvarvndppvrNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAhyyssghrttqnsqq
Low Complexity Region (SEG)
MNKGAGSGPTaaaaaaaaQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGeeaaaslkeleaHYYSSGHRTTQNSQQ
Disordered region (IsUnstruct)
***************************VETDIASIVDNFSQLVNVARV*************************DSLLKLVSELKQTAIFSGFASL*****************************************************
Disordered Region (DISOPRED)
***************************VETDIASIVDNFSQLVNVARV************MMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH*****************MLARIGEEAAASLKELEAHYYSS**********
Disordered Region (DISEMBL)
*************************QRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYY************
Disordered Region (DISPRO)
****************AAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSG*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKGAGSGPTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSGHRTTQNSQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q8LCH5	154	Mediator of RNA polymeras	yes	no	0.912	0.876	0.8	1e-52
Q9SA42	150	Mediator of RNA polymeras	no	no	0.912	0.9	0.792	6e-52
Q54XB0	149	Putative mediator of RNA	yes	no	0.925	0.919	0.311	3e-19
A5WUL3	198	Mediator of RNA polymeras	no	no	0.810	0.606	0.379	2e-17
A0JPN6	200	Mediator of RNA polymeras	yes	no	0.743	0.55	0.344	1e-14
Q62276	200	Mediator of RNA polymeras	no	no	0.743	0.55	0.344	1e-14
Q15528	200	Mediator of RNA polymeras	no	no	0.729	0.54	0.350	2e-14
Q5E9K2	201	Mediator of RNA polymeras	yes	no	0.743	0.547	0.336	3e-14
Q800L3	203	Mediator of RNA polymeras	no	no	0.729	0.532	0.324	3e-13
O57595	200	Mediator of RNA polymeras	N/A	no	0.770	0.57	0.325	4e-13

>sp|Q8LCH5|MD22B_ARATH Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana GN=MED22B PE=1 SV=1

 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/135 (80%), Positives = 126/135 (93%)

Query: 9   PTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASR 68
           PTAAAAAAA QKQK L+QRVETDI S+VDNF+Q+VNV+RV+DPPV+NSQE++MMEMRASR
Sbjct: 17  PTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMMEMRASR 76

Query: 69  MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASL 128
           MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  EF+Q+AEKT+R+LARI ++A+A+L
Sbjct: 77  MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADDASANL 136

Query: 129 KELEAHYYSSGHRTT 143
           KELE+HYYSS  R T
Sbjct: 137 KELESHYYSSAQRLT 151

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA42|MD22A_ARATH Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana GN=MED22A PE=1 SV=1

 Score =  202 bits (514), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/135 (79%), Positives = 127/135 (94%)

Query: 9   PTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASR 68
           PTAAAAAAA QKQK L+QRV+TDI S+VDNF+Q+VNVARV+DPP++NSQE++MMEMRASR
Sbjct: 14  PTAAAAAAALQKQKALLQRVDTDITSVVDNFNQIVNVARVSDPPMKNSQEAYMMEMRASR 73

Query: 69  MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASL 128
           +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  EF+Q+AEKT+R+LARI ++A+ASL
Sbjct: 74  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRLLARIADDASASL 133

Query: 129 KELEAHYYSSGHRTT 143
           KELE+HYYSS  R+T
Sbjct: 134 KELESHYYSSAQRST 148

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54XB0|MED22_DICDI Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium discoideum GN=med22 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 84/138 (60%), Gaps = 1/138 (0%)

Query: 4   GAGSGPTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMME 63
           G  S P         + Q+   +++++ I  +++N+  ++ +++VNDP ++N+ E + ME
Sbjct: 5   GNNSLPPQTRGEVLFRDQQFFQKQIDSKIMQLLENYHNIIKISKVNDP-LKNASEIYEME 63

Query: 64  MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEE 123
            R S M+ A + LLK++ ELKQ  I + F+++ + V  +   F+++ E+T++ +  I EE
Sbjct: 64  TRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIKLISEE 123

Query: 124 AAASLKELEAHYYSSGHR 141
            + SLKELE  YY+S ++
Sbjct: 124 LSRSLKELEDEYYNSSYK 141

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Dictyostelium discoideum (taxid: 44689)

>sp|A5WUL3|MED22_DANRE Mediator of RNA polymerase II transcription subunit 22 OS=Danio rerio GN=med22 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 9/129 (6%)

Query: 19  QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
           Q ++TL+Q    R++ DI SI+DNF++++  A+V D        +  Q+ F M +RA+ +
Sbjct: 9   QSKETLLQNYNKRLKDDIRSILDNFTEIIKTAKVEDETQVSRATQAEQDHFEMHVRAANI 68

Query: 70  VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLK 129
           V+A +SL+KLVS+LKQ  I + F S+N+ +  R  +     E+ D+ L  + +E A  L 
Sbjct: 69  VRAGESLMKLVSDLKQFLILNDFPSVNEAISLRNQQLRTLQEECDKKLISLRDEIAIDLY 128

Query: 130 ELEAHYYSS 138
           ELE  YYSS
Sbjct: 129 ELEEEYYSS 137

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|A0JPN6|MED22_RAT Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus GN=Med22 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 74/119 (62%), Gaps = 9/119 (7%)

Query: 16  AAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRA 66
           A  Q ++TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA
Sbjct: 6   ALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRA 65

Query: 67  SRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
           + +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +E +
Sbjct: 66  ANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVS 124

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Rattus norvegicus (taxid: 10116)

>sp|Q62276|MED22_MOUSE Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus GN=Med22 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 74/119 (62%), Gaps = 9/119 (7%)

Query: 16  AAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRA 66
           A  Q ++TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA
Sbjct: 6   ALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRA 65

Query: 67  SRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
           + +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +E +
Sbjct: 66  ANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVS 124

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q15528|MED22_HUMAN Mediator of RNA polymerase II transcription subunit 22 OS=Homo sapiens GN=MED22 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 73/117 (62%), Gaps = 9/117 (7%)

Query: 16  AAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRA 66
           A  Q ++TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA
Sbjct: 6   ALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRA 65

Query: 67  SRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEE 123
           + +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +E
Sbjct: 66  ANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDE 122

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q5E9K2|MED22_BOVIN Mediator of RNA polymerase II transcription subunit 22 OS=Bos taurus GN=MED22 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 74/119 (62%), Gaps = 9/119 (7%)

Query: 16  AAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRA 66
           A  Q ++TL+Q    R++ D+ SI+DNF++++  A++ D        +  Q+++ M +RA
Sbjct: 6   ALPQSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRA 65

Query: 67  SRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
           + +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +E +
Sbjct: 66  ANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEVS 124

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q800L3|MED22_CHICK Mediator of RNA polymerase II transcription subunit 22 OS=Gallus gallus GN=MED22 PE=3 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 73/117 (62%), Gaps = 9/117 (7%)

Query: 18  AQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASR 68
            Q ++TL+Q    R++ D+ SI+DNF++++  A++ D        ++ Q+++ M +RA+ 
Sbjct: 8   PQSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQSEQDNYEMHVRAAN 67

Query: 69  MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAA 125
           +V+A +SL+KLVS+LKQ  I + F S+N+ + QR  +     E+ D+ L  + +E +
Sbjct: 68  IVRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEECDKKLIALRDEIS 124

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Gallus gallus (taxid: 9031)

>sp|O57595|MED22_TAKRU Mediator of RNA polymerase II transcription subunit 22 OS=Takifugu rubripes GN=med22 PE=3 SV=2

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 9/123 (7%)

Query: 12  AAAAAAAQKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDP-----PVRNSQESFMM 62
           A      Q ++TL+Q    R++ DI SI++NF++++  A++ D      P +  Q+ + M
Sbjct: 2   ATQRVLPQSKETLLQSYNKRLKDDIKSILENFTEIIKTAKIEDETQVSRPAQAEQDHYEM 61

Query: 63  EMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGE 122
            +RA+ +V+A +SL+KLVS+LKQ  I + F S+ND +  +  +     E+ D+ L  + +
Sbjct: 62  HVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNDAISLQNQQLRSLQEECDKKLISLRD 121

Query: 123 EAA 125
           E A
Sbjct: 122 EIA 124

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Takifugu rubripes (taxid: 31033)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
255557733	150	Surfeit locus protein, putative [Ricinus	0.993	0.98	0.818	4e-59
449455405	150	PREDICTED: mediator of RNA polymerase II	0.986	0.973	0.851	3e-58
225462336	150	PREDICTED: mediator of RNA polymerase II	0.871	0.86	0.844	7e-58
357451207	150	Mediator of RNA polymerase II transcript	0.871	0.86	0.837	2e-55
224101291	158	predicted protein [Populus trichocarpa]	0.918	0.860	0.860	4e-55
356556718	156	PREDICTED: putative mediator of RNA poly	0.871	0.826	0.821	1e-54
356525710	158	PREDICTED: putative mediator of RNA poly	0.871	0.816	0.829	5e-54
147857571	180	hypothetical protein VITISV_001331 [Viti	0.871	0.716	0.685	2e-53
297844568	150	surfeit locus protein 5 family protein [	0.912	0.9	0.807	3e-52
18390833	154	Surfeit locus protein 5 subunit 22 of Me	0.912	0.876	0.8	7e-51

>gi|255557733|ref|XP_002519896.1| Surfeit locus protein, putative [Ricinus communis] gi|223540942|gb|EEF42500.1| Surfeit locus protein, putative [Ricinus communis]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 122/149 (81%), Positives = 136/149 (91%), Gaps = 2/149 (1%)

Query: 1   MNKGAG-SGPTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQES 59
           MNKG G SGPTAAAAAAA QKQK+LMQRVETDIA+IVDNF+ LVNVARVN+ PVRNSQE+
Sbjct: 1   MNKGGGGSGPTAAAAAAATQKQKSLMQRVETDIANIVDNFTHLVNVARVNELPVRNSQEA 60

Query: 60  FMMEMRASRM-VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLA 118
           FMMEMRA+RM VQAADSLLKLVSELKQTAIFSGFASLNDHV+QR  EFNQQ E+TD +LA
Sbjct: 61  FMMEMRAARMQVQAADSLLKLVSELKQTAIFSGFASLNDHVDQRIVEFNQQEEETDGILA 120

Query: 119 RIGEEAAASLKELEAHYYSSGHRTTQNSQ 147
           ++GEEAAASLK+LE+HYYSS HRT+Q  Q
Sbjct: 121 KVGEEAAASLKDLESHYYSSAHRTSQTFQ 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455405|ref|XP_004145443.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Cucumis sativus] gi|449527521|ref|XP_004170759.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 126/148 (85%), Positives = 138/148 (93%), Gaps = 2/148 (1%)

Query: 1   MNKG--AGSGPTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQE 58
           MNKG   G+GPTAAAAAAAAQKQK L+QRVETDIA+IVDNF+ LVNV+RVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 59  SFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLA 118
           SFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  EFNQQA++TDR+L+
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120

Query: 119 RIGEEAAASLKELEAHYYSSGHRTTQNS 146
           RIGEEAAA+LKELE+HYYSS  RT QNS
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNS 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462336|ref|XP_002268778.1| PREDICTED: mediator of RNA polymerase II transcription subunit 22 [Vitis vinifera] gi|297736089|emb|CBI24127.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 109/129 (84%), Positives = 121/129 (93%)

Query: 19  QKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLK 78
           QKQKTL+QRVETDIA++VD+F+ LVNVARVNDPPVRNSQE+FMMEMRA+RMVQAADSLLK
Sbjct: 21  QKQKTLLQRVETDIANVVDHFTFLVNVARVNDPPVRNSQEAFMMEMRAARMVQAADSLLK 80

Query: 79  LVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSS 138
           LVSELKQTAIFSGFASLNDHV+QR  EFNQQAEKTD +LARIGEEAAASLKELE+HYYSS
Sbjct: 81  LVSELKQTAIFSGFASLNDHVDQREAEFNQQAEKTDHLLARIGEEAAASLKELESHYYSS 140

Query: 139 GHRTTQNSQ 147
             RT++  Q
Sbjct: 141 AQRTSEPPQ 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451207|ref|XP_003595880.1| Mediator of RNA polymerase II transcription subunit [Medicago truncatula] gi|355484928|gb|AES66131.1| Mediator of RNA polymerase II transcription subunit [Medicago truncatula]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 116/129 (89%)

Query: 19  QKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLK 78
           QKQKTL+QRVE DIA+IVDNFS LVNVARVNDPPVRNSQE+FMMEMRA+RMVQAADSLLK
Sbjct: 21  QKQKTLLQRVEGDIANIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRAARMVQAADSLLK 80

Query: 79  LVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSS 138
           LVSELKQTAIFSGFASLNDHVEQR  EFNQ AEKTD  L+ IGEEAAASLKELE+HY SS
Sbjct: 81  LVSELKQTAIFSGFASLNDHVEQRRLEFNQLAEKTDHTLSTIGEEAAASLKELESHYSSS 140

Query: 139 GHRTTQNSQ 147
             +T Q+ Q
Sbjct: 141 AQKTIQDVQ 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101291|ref|XP_002312218.1| predicted protein [Populus trichocarpa] gi|222852038|gb|EEE89585.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 123/136 (90%)

Query: 9   PTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASR 68
           PT AAAAAAAQKQK LMQRVETDIA IVDNF+ LVNVAR+ND PVRNSQE+FMMEMRA+R
Sbjct: 19  PTTAAAAAAAQKQKALMQRVETDIAHIVDNFTHLVNVARINDTPVRNSQEAFMMEMRAAR 78

Query: 69  MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASL 128
           MVQAADSLLKLVSELKQTAIFSGFASLNDHV+QR  EF Q AEKTD MLARIGEEAAASL
Sbjct: 79  MVQAADSLLKLVSELKQTAIFSGFASLNDHVDQRIGEFTQLAEKTDSMLARIGEEAAASL 138

Query: 129 KELEAHYYSSGHRTTQ 144
           KELE HYYSS  RT+Q
Sbjct: 139 KELETHYYSSAQRTSQ 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556718|ref|XP_003546670.1| PREDICTED: putative mediator of RNA polymerase II transcription subunit 22-like [Glycine max]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/129 (82%), Positives = 116/129 (89%)

Query: 19  QKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLK 78
           QKQKTL+QRVE DIA+IVDNF+ LVNVARVNDPPVRNSQE+FMMEMRA+RMVQAADSLLK
Sbjct: 27  QKQKTLLQRVEGDIANIVDNFNHLVNVARVNDPPVRNSQEAFMMEMRAARMVQAADSLLK 86

Query: 79  LVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSS 138
           LVSELKQTAIFSGFASLNDHVE+R  EFNQ AEKTDR L+R+GEEAAASLK LE+HY SS
Sbjct: 87  LVSELKQTAIFSGFASLNDHVEERRIEFNQLAEKTDRTLSRVGEEAAASLKGLESHYSSS 146

Query: 139 GHRTTQNSQ 147
             +  QN Q
Sbjct: 147 VQKIIQNPQ 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525710|ref|XP_003531466.1| PREDICTED: putative mediator of RNA polymerase II transcription subunit 22-like [Glycine max]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/129 (82%), Positives = 116/129 (89%)

Query: 19  QKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASRMVQAADSLLK 78
           QK+KTL+QRVE DIA+IVDNFS LVNVARVNDP VRNSQE+FMMEMRA+RMVQAADSLLK
Sbjct: 29  QKRKTLVQRVEGDIANIVDNFSHLVNVARVNDPLVRNSQEAFMMEMRAARMVQAADSLLK 88

Query: 79  LVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSS 138
           LVSELKQTAIFSGFASLNDHVEQR  EFNQ AEKTD  L+R+GEEAAASLKELE+HY SS
Sbjct: 89  LVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSRVGEEAAASLKELESHYSSS 148

Query: 139 GHRTTQNSQ 147
             +T QN Q
Sbjct: 149 ALKTMQNLQ 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857571|emb|CAN83083.1| hypothetical protein VITISV_001331 [Vitis vinifera]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/159 (68%), Positives = 121/159 (76%), Gaps = 30/159 (18%)

Query: 19  QKQKTLMQRVETDIASIVDNFSQLVNVAR------------------------------V 48
           QKQKTL+QRVETDIA++VD+F+ LVNVAR                              V
Sbjct: 21  QKQKTLLQRVETDIANVVDHFTFLVNVARMSPTCTCWKFSAKQVSQSDAIHQGCKHIRVV 80

Query: 49  NDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQ 108
           NDPPVRNSQE+FMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHV+QR  EFNQ
Sbjct: 81  NDPPVRNSQEAFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVDQREAEFNQ 140

Query: 109 QAEKTDRMLARIGEEAAASLKELEAHYYSSGHRTTQNSQ 147
           QAEKTD +LARIGEEAAASLKELE+HYYSS  RT++  Q
Sbjct: 141 QAEKTDHLLARIGEEAAASLKELESHYYSSAQRTSEPPQ 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844568|ref|XP_002890165.1| surfeit locus protein 5 family protein [Arabidopsis lyrata subsp. lyrata] gi|297336007|gb|EFH66424.1| surfeit locus protein 5 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 127/135 (94%)

Query: 9   PTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASR 68
           PTAAAAAAA QKQK LMQRVETDI S+VDNF+Q+VNVARV+DPP++NSQE++MMEMRASR
Sbjct: 13  PTAAAAAAALQKQKALMQRVETDITSVVDNFTQIVNVARVSDPPMKNSQEAYMMEMRASR 72

Query: 69  MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASL 128
           +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRT EF+++AEKT+R+LARI ++A+ASL
Sbjct: 73  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTAEFDKEAEKTNRLLARIADDASASL 132

Query: 129 KELEAHYYSSGHRTT 143
           KELE+HYYSS  R T
Sbjct: 133 KELESHYYSSAQRLT 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390833|ref|NP_563802.1| Surfeit locus protein 5 subunit 22 of Mediator complex [Arabidopsis thaliana] gi|75155212|sp|Q8LCH5.1|MD22B_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 22b gi|21554679|gb|AAM63656.1| unknown [Arabidopsis thaliana] gi|27754481|gb|AAO22688.1| unknown protein [Arabidopsis thaliana] gi|56236120|gb|AAV84516.1| At1g07950 [Arabidopsis thaliana] gi|149944297|gb|ABR46191.1| At1g07950 [Arabidopsis thaliana] gi|332190096|gb|AEE28217.1| Surfeit locus protein 5 subunit 22 of Mediator complex [Arabidopsis thaliana]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 108/135 (80%), Positives = 126/135 (93%)

Query: 9   PTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMMEMRASR 68
           PTAAAAAAA QKQK L+QRVETDI S+VDNF+Q+VNV+RV+DPPV+NSQE++MMEMRASR
Sbjct: 17  PTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMMEMRASR 76

Query: 69  MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASL 128
           MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  EF+Q+AEKT+R+LARI ++A+A+L
Sbjct: 77  MVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADDASANL 136

Query: 129 KELEAHYYSSGHRTT 143
           KELE+HYYSS  R T
Sbjct: 137 KELESHYYSSAQRLT 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2205130	154	MED22B [Arabidopsis thaliana (	0.945	0.909	0.7	1.2e-47
TAIR|locus:2032920	150	AT1G16430 [Arabidopsis thalian	0.966	0.953	0.673	3.3e-47
UNIPROTKB|Q15528	200	MED22 "Mediator of RNA polymer	0.810	0.6	0.333	2.6e-15
UNIPROTKB|Q5T8T8	137	MED22 "Mediator complex subuni	0.810	0.875	0.333	2.6e-15
MGI|MGI:98446	200	Med22 "mediator complex subuni	0.810	0.6	0.333	2.6e-15
RGD|1564893	200	Med22 "mediator complex subuni	0.810	0.6	0.333	2.6e-15
UNIPROTKB|Q5E9K2	201	MED22 "Mediator of RNA polymer	0.810	0.597	0.325	3.3e-15
UNIPROTKB|E2QV33	204	MED22 "Uncharacterized protein	0.810	0.588	0.325	3.3e-15
UNIPROTKB|Q800L3	203	MED22 "Mediator of RNA polymer	0.824	0.600	0.312	4.2e-15
DICTYBASE|DDB_G0279087	149	med22 "putative mediator compl	0.945	0.939	0.253	8.8e-15

TAIR|locus:2205130 MED22B [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 98/140 (70%), Positives = 111/140 (79%)

Query:     4 GAGSGPTXXXXXXXXQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQESFMME 63
             G GSGPT        QKQK L+QRVETDI S+VDNF+Q+VNV+RV+DPPV+NSQE++MME
Sbjct:    12 GGGSGPTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYMME 71

Query:    64 MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXX 123
             MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  EF+Q+AEKT+R+LARI   
Sbjct:    72 MRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIADD 131

Query:   124 XXXXXXXXXXHYYSSGHRTT 143
                       HYYSS  R T
Sbjct:   132 ASANLKELESHYYSSAQRLT 151

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

TAIR|locus:2032920 AT1G16430 [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 99/147 (67%), Positives = 115/147 (78%)

Query:     1 MNKGAGSG----PTXXXXXXXXQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNS 56
             MNKG GSG    PT        QKQK L+QRV+TDI S+VDNF+Q+VNVARV+DPP++NS
Sbjct:     2 MNKGGGSGGGSGPTAAAAAAALQKQKALLQRVDTDITSVVDNFNQIVNVARVSDPPMKNS 61

Query:    57 QESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRM 116
             QE++MMEMRASR+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  EF+Q+AEKT+R+
Sbjct:    62 QEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNRL 121

Query:   117 LARIGXXXXXXXXXXXXHYYSSGHRTT 143
             LARI             HYYSS  R+T
Sbjct:   122 LARIADDASASLKELESHYYSSAQRST 148

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

UNIPROTKB|Q15528 MED22 "Mediator of RNA polymerase II transcription subunit 22" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 43/129 (33%), Positives = 74/129 (57%)

Query:    19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
             Q ++TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA+ +
Sbjct:     9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68

Query:    70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
             V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +         
Sbjct:    69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLY 128

Query:   130 XXXXHYYSS 138
                  YYSS
Sbjct:   129 ELEEEYYSS 137

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5T8T8 MED22 "Mediator complex subunit 22" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 43/129 (33%), Positives = 74/129 (57%)

Query:    19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
             Q ++TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA+ +
Sbjct:     9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68

Query:    70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
             V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +         
Sbjct:    69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRTLQEECDRKLITLRDEISIDLY 128

Query:   130 XXXXHYYSS 138
                  YYSS
Sbjct:   129 ELEEEYYSS 137

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

MGI|MGI:98446 Med22 "mediator complex subunit 22" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 43/129 (33%), Positives = 74/129 (57%)

Query:    19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
             Q ++TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA+ +
Sbjct:     9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68

Query:    70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
             V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +         
Sbjct:    69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLY 128

Query:   130 XXXXHYYSS 138
                  YYSS
Sbjct:   129 ELEEEYYSS 137

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=ISO

RGD|1564893 Med22 "mediator complex subunit 22" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 43/129 (33%), Positives = 74/129 (57%)

Query:    19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
             Q ++TL+Q    R++ DI SI+DNF++++  A++ D        +  Q+++ M +RA+ +
Sbjct:     9 QSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68

Query:    70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
             V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +         
Sbjct:    69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRDEVSIDLY 128

Query:   130 XXXXHYYSS 138
                  YYSS
Sbjct:   129 ELEEEYYSS 137

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA;ISO

UNIPROTKB|Q5E9K2 MED22 "Mediator of RNA polymerase II transcription subunit 22" [Bos taurus (taxid:9913)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 42/129 (32%), Positives = 74/129 (57%)

Query:    19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
             Q ++TL+Q    R++ D+ SI+DNF++++  A++ D        +  Q+++ M +RA+ +
Sbjct:     9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68

Query:    70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
             V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +         
Sbjct:    69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEVSIDLY 128

Query:   130 XXXXHYYSS 138
                  YYSS
Sbjct:   129 ELEEEYYSS 137

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|E2QV33 MED22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 42/129 (32%), Positives = 74/129 (57%)

Query:    19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
             Q ++TL+Q    R++ D+ SI+DNF++++  A++ D        +  Q+++ M +RA+ +
Sbjct:     9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEMHVRAANI 68

Query:    70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
             V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  +         
Sbjct:    69 VRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLIALRDEISIDLY 128

Query:   130 XXXXHYYSS 138
                  YYSS
Sbjct:   129 ELEEEYYSS 137

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q800L3 MED22 "Mediator of RNA polymerase II transcription subunit 22" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/131 (31%), Positives = 75/131 (57%)

Query:    19 QKQKTLMQ----RVETDIASIVDNFSQLVNVARVNDPP-----VRNSQESFMMEMRASRM 69
             Q ++TL+Q    R++ D+ SI+DNF++++  A++ D        ++ Q+++ M +RA+ +
Sbjct:     9 QSKETLLQSYNKRLKDDVKSIMDNFTEIIKTAKIEDETQVSRATQSEQDNYEMHVRAANI 68

Query:    70 VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGXXXXXXXX 129
             V+A +SL+KLVS+LKQ  I + F S+N+ + QR  +     E+ D+ L  +         
Sbjct:    69 VRAGESLMKLVSDLKQFLILNDFPSVNEAINQRNQQLRSLQEECDKKLIALRDEISIDLY 128

Query:   130 XXXXHYYSSGH 140
                  YYSS +
Sbjct:   129 ELEEEYYSSSY 139

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

DICTYBASE|DDB_G0279087 med22 "putative mediator complex subunit 22" [Dictyostelium discoideum (taxid:44689)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 36/142 (25%), Positives = 77/142 (54%)

Query:     1 MNKGAGSG-PTXXXXXXXXQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPPVRNSQES 59
             MN G  +  P         + Q+   +++++ I  +++N+  ++ +++VNDP ++N+ E 
Sbjct:     1 MNTGGNNSLPPQTRGEVLFRDQQFFQKQIDSKIMQLLENYHNIIKISKVNDP-LKNASEI 59

Query:    60 FMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLAR 119
             + ME R S M+ A + LLK++ ELKQ  I + F+++ + V  +   F+++ E+T++ +  
Sbjct:    60 YEMETRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIKL 119

Query:   120 IGXXXXXXXXXXXXHYYSSGHR 141
             I              YY+S ++
Sbjct:   120 ISEELSRSLKELEDEYYNSSYK 141

GO:0016592 "mediator complex" evidence=IEA;ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54XB0	MED22_DICDI	No assigned EC number	0.3115	0.9256	0.9194	yes	no
Q9SA42	MD22A_ARATH	No assigned EC number	0.7925	0.9121	0.9	no	no
Q8LCH5	MD22B_ARATH	No assigned EC number	0.8	0.9121	0.8766	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002127001	SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (150 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034251001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (258 aa)					•	•			0.516

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
pfam06179	108	pfam06179, Med22, Surfeit locus protein 5 subunit	1e-32

>gnl|CDD|203401 pfam06179, Med22, Surfeit locus protein 5 subunit 22 of Mediator complex

 Score =  111 bits (279), Expect = 1e-32
 Identities = 40/108 (37%), Positives = 74/108 (68%), Gaps = 1/108 (0%)

Query: 24  LMQRVETDIASIVDNFSQLVNVARV-NDPPVRNSQESFMMEMRASRMVQAADSLLKLVSE 82
           L+QR++ DI S++DNF++++ +A+  N      +QE + ME+RA+++V+A + LLKL  E
Sbjct: 1   LLQRLDDDIESLLDNFTEIIKLAKNENKDKTVAAQEVYEMEVRAAQLVRAVEDLLKLTRE 60

Query: 83  LKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKE 130
           +K+  I + F+ LN+ ++Q+  EF  + E+TD++LA + E+ +  L E
Sbjct: 61  IKEFWILNDFSPLNEEIKQQEEEFESEQEETDQLLAELLEKLSEELIE 108

This family consists of several eukaryotic Surfeit locus protein 5 (SURF5) sequences. The human Surfeit locus has been mapped on chromosome 9q34.1. The locus includes six tightly clustered housekeeping genes (Surf1-6), and the gene organisation is similar in human, mouse and chicken Surfeit locus. The Med22 subunit of Mediator complex is part of the essential core head region. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
KOG3304	148	consensus Surfeit family protein 5 [General functi	100.0
PF06179	109	Med22: Surfeit locus protein 5 subunit 22 of Media	99.96

>KOG3304 consensus Surfeit family protein 5 [General function prediction only]

Probab=100.00  E-value=1.9e-56  Score=346.17  Aligned_cols=140  Identities=43%  Similarity=0.676  Sum_probs=134.6

Q ss_pred             CCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCC-----CccchHHHHHHHhHHHHHHHhH
Q 032054            1 MNK--GAGSGPTAAAAAAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDP-----PVRNSQESFMMEMRASRMVQAA   73 (148)
Q Consensus         1 ~~~--~~~~~~~~~~~~~~~q~~~sl~~Rl~~dI~slldnF~~Iik~Akv~d~-----~~~~~~e~fem~vrAa~mVrAa   73 (148)
                      |++  |||+||+++|+.++.+++  |++||++||+||+|||++||++|||+++     +++++|+.|+|+|||++|||||
T Consensus         1 M~~g~GG~s~~~~~ask~al~k~--~~~Rl~ddIkS~~dNF~~Ii~~Akv~~~~q~~k~tq~~q~a~eM~vRAa~mVrA~   78 (148)
T KOG3304|consen    1 MAQGGGGGSRPALPASKEALLKS--YNKRLKDDIKSIMDNFTEIIKTAKVEDETQVSKATQGEQDAYEMHVRAANMVRAG   78 (148)
T ss_pred             CCCCCCCCCccccHHHHHHHHHH--HHHHHHHhHHHHHHhHHHHHHHHhcCChhhhccccccchHHHHHHHHHHHHHHHH
Confidence            788  456889999998888875  9999999999999999999999999998     7999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 032054           74 DSLLKLVSELKQTAIFSGFASLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSGHRT  142 (148)
Q Consensus        74 EsLLkLvseLKq~liL~Df~slne~i~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeYYsS~~k~  142 (148)
                      |||||||+|||||+|||||+++|++|++++.+|++++++|+++|+.|+||++.+|||||+|||+|.||.
T Consensus        79 dsLlKLvsdLKqflIl~dFhsln~~I~q~~aq~~~t~~e~~r~l~~l~de~s~~L~eLE~eyyss~~r~  147 (148)
T KOG3304|consen   79 DSLLKLVSDLKQFLILNDFHSLNEAIDQRNAQFRQTQEECDRKLITLRDEVSIDLYELEEEYYSSAYRS  147 (148)
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999975

>PF06179 Med22: Surfeit locus protein 5 subunit 22 of Mediator complex; PDB: 3R84_P 3RJ1_K

Probab=99.96  E-value=2.2e-31  Score=195.65  Aligned_cols=108  Identities=36%  Similarity=0.689  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhccCCC-CccchHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHhhcCchhhhHHHHHH
Q 032054           24 LMQRVETDIASIVDNFSQLVNVARVNDP-PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR  102 (148)
Q Consensus        24 l~~Rl~~dI~slldnF~~Iik~Akv~d~-~~~~~~e~fem~vrAa~mVrAaEsLLkLvseLKq~liL~Df~slne~i~~~  102 (148)
                      |++|+|.+|.+|++||.+||++|+..+. +++++++.|+|+|+|++||||||+||+||++||++||||||+.+|+.++.+
T Consensus         1 Ll~rld~~i~~ll~~f~~li~~A~~~~~~~~~~a~~~~~m~~~a~~lira~e~LL~Ltr~LKe~wll~d~~~~~e~~~~~   80 (109)
T PF06179_consen    1 LLQRLDQDIESLLDNFRELIKLAKNQNSDPTQAAQESFQMEVRAAQLIRAAEDLLSLTRELKELWLLGDFPPLNEDIDEQ   80 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB-----------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchhHHHH
Confidence            6899999999999999999999995543 689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032054          103 TNEFNQQAEKTDRMLARIGEEAAASLKEL  131 (148)
Q Consensus       103 ~~~l~~~~e~~d~~L~~l~del~~~L~eL  131 (148)
                      ...+...+++|++++..|++++..+|+||
T Consensus        81 ~~~~~~~~~~~~~~l~~l~~~~~~~l~el  109 (109)
T PF06179_consen   81 EERLDQEQEEVDKLLNALRDELMRELAEL  109 (109)
T ss_dssp             ------TT------THHHHSTTTTTTT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999987

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
4h63_V	135	Mediator of RNA polymerase II transcription subun;	99.96
3r84_B	92	Mediator of RNA polymerase II transcription subun;	98.7
4gwp_D	121	Mediator of RNA polymerase II transcription subun;	96.49

>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}

Probab=99.96  E-value=5.7e-30  Score=196.65  Aligned_cols=123  Identities=17%  Similarity=0.256  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCCCC-ccchHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHhhcCch
Q 032054           15 AAAAQKQKTLMQRVETDIASIVDNFSQLVNVARVNDPP-VRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFA   93 (148)
Q Consensus        15 ~~~~q~~~sl~~Rl~~dI~slldnF~~Iik~Akv~d~~-~~~~~e~fem~vrAa~mVrAaEsLLkLvseLKq~liL~Df~   93 (148)
                      ++..|+.++|++|||.||.+|++||.+||++|+|++++ +..++++|+|++|+++||||||+||+||++||++||||||+
T Consensus         7 ~~l~~k~~~l~~rid~~v~~ll~~f~~iv~lA~v~~~~~~~~A~e~~~~~~~~~~~vra~e~LL~L~r~lKe~wllg~l~   86 (135)
T 4h63_V            7 RQLVQRTNTLNSSIDNATLTILSRFQDILDIAINEGKDKYTVAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWLTNSLS   86 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            56788999999999999999999999999999999864 77799999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 032054           94 SLNDHVEQRTNEFNQQAEKTDRMLARIGEEAAASLKELEAHYYSSGH  140 (148)
Q Consensus        94 slne~i~~~~~~l~~~~e~~d~~L~~l~del~~~L~eLEeeYYsS~~  140 (148)
                      ++|+.++....++++..+++++....|.+   ..+.++|..+++..-
T Consensus        87 ~~~e~~~~~e~~~e~~~~~~~~l~~~l~~---~~l~e~~~~e~se~~  130 (135)
T 4h63_V           87 TSFPTVDYSEPDLEKVKRTLTKLQNHLLE---VSLIEPEASETTEAP  130 (135)
T ss_dssp             SCCCCCCCSCCCHHHHHHHHHHHHTTTCC---CCSCC----------
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHH---HhccCccccccCCCC
Confidence            99999999998898888888888888777   556677766665433

>3r84_B Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}

Probab=98.70  E-value=5.7e-08  Score=70.49  Aligned_cols=71  Identities=15%  Similarity=0.345  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhccCCC------C-----ccc--hHHH-HHHHhHHHHHHHhHHHHHHHHHHHHHHHh
Q 032054           23 TLMQRVETDIASIVDNFSQLVNVARVNDP------P-----VRN--SQES-FMMEMRASRMVQAADSLLKLVSELKQTAI   88 (148)
Q Consensus        23 sl~~Rl~~dI~slldnF~~Iik~Akv~d~------~-----~~~--~~e~-fem~vrAa~mVrAaEsLLkLvseLKq~li   88 (148)
                      +|..|||..+..|...|.+||++|.|.+.      .     ...  +.+. ..++-.+.-|||-+++||.|++.||+.|+
T Consensus         8 ~LleKLdqttE~Ls~Kl~eli~lssi~~~~~~~~d~~~~~~S~~svaT~s~~Mvn~qt~qLIrgvQDLL~lTRsirEkWl   87 (92)
T 3r84_B            8 ALYEKLEQTRTILSVKLAELINITTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWL   87 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTBCCCCC--------CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999921      1     111  2222 44457788999999999999999999999


Q ss_pred             hcCch
Q 032054           89 FSGFA   93 (148)
Q Consensus        89 L~Df~   93 (148)
                      ||..|
T Consensus        88 L~QIP   92 (92)
T 3r84_B           88 LNQIP   92 (92)
T ss_dssp             HHBCC
T ss_pred             hccCC
Confidence            99865

>4gwp_D Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 3rj1_D 4gwq_D

Probab=96.49  E-value=0.018  Score=43.38  Aligned_cols=74  Identities=14%  Similarity=0.316  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhccCCCC--c-----cc----hH-HH--HHHHhHHHHHHHhHHHHHHHHHHHHHHHh
Q 032054           23 TLMQRVETDIASIVDNFSQLVNVARVNDPP--V-----RN----SQ-ES--FMMEMRASRMVQAADSLLKLVSELKQTAI   88 (148)
Q Consensus        23 sl~~Rl~~dI~slldnF~~Iik~Akv~d~~--~-----~~----~~-e~--fem~vrAa~mVrAaEsLLkLvseLKq~li   88 (148)
                      .|..||+.-+..|--...++||++.|.++.  .     +.    +. -+  -.+.-.+.-+|+...+||-|++.+|+-|+
T Consensus         5 ~L~eKLdqTtE~LS~kL~eLiklssi~~~~~d~e~~~~~~~s~~siaTt~v~MvN~qTmQLIKgvQDLLvlTRsIREKWl   84 (121)
T 4gwp_D            5 ALYEKLEQTRTILSVKLAELINMTTIADRNDDDEGSFAQENSELAVATTSVMMVNNQTMQLIKNVQDLLILTRSIKEKWL   84 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhccCCCCCcccccccccccceeeecceeeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688899999999999999999999997641  1     11    11 11  23344444569999999999999999999


Q ss_pred             hcCchhhh
Q 032054           89 FSGFASLN   96 (148)
Q Consensus        89 L~Df~sln   96 (148)
                      ||..|...
T Consensus        85 LnQIP~~~   92 (121)
T 4gwp_D           85 LNQIPVTE   92 (121)
T ss_dssp             TCCCCCCS
T ss_pred             HhcCCccc
Confidence            99999443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00