Citrus Sinensis ID: 032077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLMSLATTRCLPSSFIHQEHSNQHSFICSF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEccEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
MISPKKLIKMSKKWQKLAASKQkrisfpttgpvdaescrtssvcekghfvvyatdekrfVIPLAYLKNNVIRELFKMaedefglpscgpitlpcDAVFMEYVVSLIQRGAAKDVEKALLMSLattrclpssfihqehsnqhsficsf
Flexible Loop (DISEMBL)
mispkklikMSKKWQKLAAskqkrisfpttgpvdaescrtssvcekghfvvyatdekrfviPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLMSLATTRCLPSSfihqehsnqhsficsf
Low Complexity Region (SEG)
MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLMSLATTRCLPSSFIHQEHSNQHSFICSF
Disordered region (IsUnstruct)
*************************************CRTSSVCEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLMSLATTRCLPSSFIH*************
Disordered Region (DISOPRED)
***PKKLIKMSKKW****************************VCEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYV*******************LA*****************HSFICSF
Disordered Region (DISEMBL)
MISPKKLI***************RISFPT***********SSVCEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLMSLATTRCLPSSFIHQ************
Disordered Region (DISPRO)
*ISPKKLIKMSKKWQKLAASK***********************EKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLMSLATTRCLPSSFI****SNQHSFICSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLMSLATTRCLPSSFIHQEHSNQHSFICSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.428	0.7	0.358	2e-05
P33080	92	Auxin-induced protein X10	no	no	0.333	0.532	0.431	6e-05
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.401	0.641	0.360	8e-05
P33079	93	Auxin-induced protein 10A	no	no	0.455	0.720	0.405	8e-05
P33081	82	Auxin-induced protein 15A	no	no	0.333	0.597	0.431	0.0004
P33082	82	Auxin-induced protein X15	no	no	0.333	0.597	0.411	0.0008

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 44  CEKGHFVVYATDE-KRFVIPLAYLKNNVIRELFKMAEDEFGL--PSCGPITLPCDAVFME 100
            EKG+  VY  ++ +RFVIP++YL     ++L   AE+EFG   P+ G +T+PC     +
Sbjct: 25  VEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGG-LTIPCSEDVFQ 83

Query: 101 YVVSLIQ 107
           ++ S + 
Sbjct: 84  HITSFLN 90

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 46 KGHFVVYATDE-KRFVIPLAYLKNNVIRELFKMAEDEFGLPS-CGPITLPC 94
          KG+ VVY  D+ +RF+IP++YL     ++L   AE+EFG     G +T+PC
Sbjct: 27 KGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPC 77

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 46  KGHFVVYATDE-KRFVIPLAYLKNNVIRELFKMAEDEFGLPS-CGPITLPCDAVFMEYVV 103
           KG+  VY  +  KRFVIP+++L   + ++L   AE+EFG     G +T+PC     +++ 
Sbjct: 27  KGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHIT 86

Query: 104 S 104
           S
Sbjct: 87  S 87

Vigna radiata var. radiata (taxid: 3916)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 23 KRISFPTTGPVDAESCRTSSVCEKGHFVVYATDE-KRFVIPLAYLKNNVIRELFKMAEDE 81
          +R SF TT    A S R      KG+  VY  D+ +RF IP++YL     +EL   AE+E
Sbjct: 10 RRTSFYTT---QAASKRVD--VPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEE 64

Query: 82 FGLPS-CGPITLPC 94
          FG     G +T+PC
Sbjct: 65 FGYDHPMGGLTIPC 78

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 46 KGHFVVYATDE-KRFVIPLAYLKNNVIRELFKMAEDEFGLP-SCGPITLPC 94
          KG+  VY  ++ KRFVIP++YL     ++L   AE+EFG     G +T+PC
Sbjct: 19 KGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPC 69

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 46 KGHFVVYATDE-KRFVIPLAYLKNNVIRELFKMAEDEFGLP-SCGPITLPC 94
          KG+  VY  ++ KRFVIP++Y+     ++L   AE+EFG     G +T+PC
Sbjct: 19 KGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPC 69

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
225428223	148	PREDICTED: indole-3-acetic acid-induced	0.986	0.979	0.664	7e-52
297744514	142	unnamed protein product [Vitis vinifera]	0.952	0.985	0.657	3e-48
225428294	146	PREDICTED: auxin-induced protein 6B-like	0.986	0.993	0.641	4e-48
225428233	147	PREDICTED: uncharacterized protein LOC10	0.993	0.993	0.614	1e-47
224103099	148	SAUR family protein [Populus trichocarpa	1.0	0.993	0.587	6e-47
297744481	290	unnamed protein product [Vitis vinifera]	0.979	0.496	0.639	9e-47
225428225	148	PREDICTED: uncharacterized protein LOC10	1.0	0.993	0.567	9e-47
225428209	178	PREDICTED: uncharacterized protein LOC10	0.952	0.786	0.662	1e-46
224103101	148	SAUR family protein [Populus trichocarpa	1.0	0.993	0.587	1e-46
225428221	148	PREDICTED: indole-3-acetic acid-induced	1.0	0.993	0.628	2e-46

>gi|225428223|ref|XP_002279270.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 119/146 (81%), Gaps = 1/146 (0%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFP-TTGPVDAESCRTSSVCEKGHFVVYATDEKRF 59
           MIS KKLIKM++KWQK+AA ++KRIS P T+  VDAESC TSS  EKGHFVVY+ DE RF
Sbjct: 1   MISAKKLIKMARKWQKMAAIRRKRISLPRTSREVDAESCSTSSTAEKGHFVVYSADESRF 60

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           V+PL YL +N+ RELFKM+E+EFGLPS GPITLPCDAVF+EY++SL+Q+  AKD+EKALL
Sbjct: 61  VVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALL 120

Query: 120 MSLATTRCLPSSFIHQEHSNQHSFIC 145
            ++AT RCL +S I QE  NQ   +C
Sbjct: 121 TAIATGRCLSTSNICQEQGNQQLLVC 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744514|emb|CBI37776.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 120/149 (80%), Gaps = 9/149 (6%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFPTTGPV-DAESCRTSSVCEKGHFVVYATDEKRF 59
           MI+PKKLIKM++KWQK+AA ++KRIS P T  V DA+      + +KGHFVVY TD++RF
Sbjct: 1   MINPKKLIKMARKWQKMAAMRRKRISLPRTDEVLDADR-----LADKGHFVVYTTDKRRF 55

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           +IPLAYL NN++RELFKMAE+EFGL S GPITLPCD+VFMEY++ LIQRG AKDVEKALL
Sbjct: 56  MIPLAYLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALL 115

Query: 120 MSLATTRC-LPSSFIHQEHSNQHSFICSF 147
            SLAT+ C L SS  HQEH +Q   +CS+
Sbjct: 116 FSLATSCCSLLSS--HQEHISQQLLVCSY 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428294|ref|XP_002282698.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/148 (64%), Positives = 118/148 (79%), Gaps = 3/148 (2%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFP-TTGPVDAESCRTSSVCEKGHFVVYATDEKRF 59
           MISPKKLIKM++KWQ+ AA  +KRIS P T   +DA +C TS V +KGHFVVY TD++RF
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTS-VADKGHFVVYPTDKRRF 59

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           +IPL YL NN+ RELFKM+E+EFGL S GPITLPCD+VFM+Y++ LIQRG AKD+EKAL+
Sbjct: 60  MIPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALI 119

Query: 120 MSLATTRCLPSSFIHQEHSNQHSFICSF 147
            SL T+RC  SS  HQEH +QH  +C +
Sbjct: 120 FSLVTSRCSQSSS-HQEHISQHLLVCGY 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428233|ref|XP_002279337.1| PREDICTED: uncharacterized protein LOC100257266 [Vitis vinifera]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 118/148 (79%), Gaps = 2/148 (1%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFP-TTGPVDAESCRTSSVCEKGHFVVYATDEKRF 59
           MIS KKLIKM++ WQK+AA ++KRI  P T+G VDA+ C TS+  EKGHFVVY++DE RF
Sbjct: 1   MISAKKLIKMARNWQKMAAIRRKRIILPRTSGEVDADGCSTSTA-EKGHFVVYSSDESRF 59

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           V+PL YL +N+ RELFKM+E+EFGLPS GPITLPCDAVF+EY++SL+Q+  AKD+EKALL
Sbjct: 60  VVPLPYLNSNIFRELFKMSEEEFGLPSNGPITLPCDAVFIEYIISLVQQSIAKDLEKALL 119

Query: 120 MSLATTRCLPSSFIHQEHSNQHSFICSF 147
            ++AT  CL +S + QE  +Q   IC +
Sbjct: 120 TAIATGCCLSTSNLCQEQGSQQLLICGY 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103099|ref|XP_002312925.1| SAUR family protein [Populus trichocarpa] gi|222849333|gb|EEE86880.1| SAUR family protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 115/148 (77%), Gaps = 1/148 (0%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFPTT-GPVDAESCRTSSVCEKGHFVVYATDEKRF 59
           MIS KKLIK++++WQKLAA  +KR++FP T   +D++ C TSS  EKGHFVVY TDEKRF
Sbjct: 1   MISAKKLIKLAREWQKLAAISRKRLTFPQTISSLDSDDCSTSSTAEKGHFVVYTTDEKRF 60

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           V+PL YL N +++ELF +AE+EFGL S GP+T+P DA FMEY +++I++  AKDVEKALL
Sbjct: 61  VLPLDYLNNEIVKELFNLAEEEFGLTSNGPLTMPRDAAFMEYAITMIKKNVAKDVEKALL 120

Query: 120 MSLATTRCLPSSFIHQEHSNQHSFICSF 147
           ++LA+ RC  + + HQE  NQ   ICSF
Sbjct: 121 ITLASDRCSSTLYPHQEVRNQQLSICSF 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744481|emb|CBI37743.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 117/147 (79%), Gaps = 3/147 (2%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFP-TTGPVDAESCRTSSVCEKGHFVVYATDEKRF 59
           MISPKKLIKM++KWQ+ AA  +KRIS P T   +DA +C TS V +KGHFVVY TD++RF
Sbjct: 1   MISPKKLIKMARKWQRRAALGRKRISSPRTDADMDAGTCSTS-VADKGHFVVYPTDKRRF 59

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           +IPL YL NN+ RELFKM+E+EFGL S GPITLPCD+VFM+Y++ LIQRG AKD+EKAL+
Sbjct: 60  MIPLVYLSNNIFRELFKMSEEEFGLQSDGPITLPCDSVFMQYILPLIQRGVAKDMEKALI 119

Query: 120 MSLATTRCLPSSFIHQEHSNQHSFICS 146
            SL T+RC  SS  HQEH +QH  + +
Sbjct: 120 FSLVTSRCSQSS-SHQEHISQHLLVLN 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428225|ref|XP_002282054.1| PREDICTED: uncharacterized protein LOC100253806 [Vitis vinifera]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 117/148 (79%), Gaps = 1/148 (0%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFPTTGP-VDAESCRTSSVCEKGHFVVYATDEKRF 59
           MISPKKLI+M++KWQK+AA  +KRIS       V+ + C TSSV +KGHFVVY++D +RF
Sbjct: 1   MISPKKLIRMARKWQKMAALGRKRISLQRINKGVNEDCCSTSSVADKGHFVVYSSDRRRF 60

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           VIPLAYL + + RELF+M+E+EFG+ S GPI LPCD+VF++YV+S IQRG AK++E+AL+
Sbjct: 61  VIPLAYLNSEIFRELFQMSEEEFGIQSAGPIILPCDSVFLDYVISFIQRGVAKELERALI 120

Query: 120 MSLATTRCLPSSFIHQEHSNQHSFICSF 147
           MS+A + C  SS+ HQE +N+   +C++
Sbjct: 121 MSIAPSNCSSSSYFHQEQTNEQLLLCAY 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428209|ref|XP_002279108.1| PREDICTED: uncharacterized protein LOC100264057 [Vitis vinifera]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 118/145 (81%), Gaps = 5/145 (3%)

Query: 5   KKLIKMSKKWQKLAASKQKRISFPTTG-PVDAESCRTSSVCEKGHFVVYATDEKRFVIPL 63
           KKL+KM++KWQ++AA  +K IS P T   VDA++C TS V +KGHFVVY TD++RF+IPL
Sbjct: 37  KKLVKMARKWQRIAALGRKTISSPRTKVDVDADNCSTS-VADKGHFVVYTTDKRRFMIPL 95

Query: 64  AYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLMSLA 123
           AYL NN++RELFKMAE+EFGL S GPITLPCD+VFMEY++ LIQRG AKDVEKALL SLA
Sbjct: 96  AYLSNNILRELFKMAEEEFGLQSNGPITLPCDSVFMEYILPLIQRGVAKDVEKALLFSLA 155

Query: 124 TTRC-LPSSFIHQEHSNQHSFICSF 147
           T+ C L SS  HQEH +Q   +CS+
Sbjct: 156 TSCCSLLSS--HQEHISQQLLVCSY 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103101|ref|XP_002312926.1| SAUR family protein [Populus trichocarpa] gi|222849334|gb|EEE86881.1| SAUR family protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 111/148 (75%), Gaps = 1/148 (0%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFP-TTGPVDAESCRTSSVCEKGHFVVYATDEKRF 59
           MIS KKLIK+++KWQKLAA ++KRI FP T    D+E C TSS  EKGHFVVY TD KRF
Sbjct: 1   MISAKKLIKLARKWQKLAAIRRKRIEFPGTVSGKDSEDCSTSSTAEKGHFVVYTTDNKRF 60

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           V+PL YL N ++RELF +AE+E+GL    P+TL CDAV MEY ++LIQ+  AKDVEKALL
Sbjct: 61  VLPLDYLNNEIVRELFNLAEEEYGLTGNAPLTLACDAVIMEYTITLIQQNVAKDVEKALL 120

Query: 120 MSLATTRCLPSSFIHQEHSNQHSFICSF 147
           M++A+++C  S ++  E  NQ   +CSF
Sbjct: 121 MTIASSQCSSSLYLRHEVRNQQLSVCSF 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428221|ref|XP_002279251.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 110/148 (74%), Gaps = 1/148 (0%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFPTTGP-VDAESCRTSSVCEKGHFVVYATDEKRF 59
           MISPKKLIKM++KWQK+AAS  KRIS P     ++A+ C TSSV +KGHFVVY  D KRF
Sbjct: 1   MISPKKLIKMARKWQKVAASWGKRISVPRIDQGLNADCCSTSSVADKGHFVVYTADRKRF 60

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALL 119
           +IPLAYL   + R+L KM+E+EFGLPS GPITL CD+ FMEY+V LIQR  AKD+EKALL
Sbjct: 61  MIPLAYLNTQIFRDLLKMSEEEFGLPSDGPITLLCDSFFMEYIVFLIQRSVAKDLEKALL 120

Query: 120 MSLATTRCLPSSFIHQEHSNQHSFICSF 147
           MS A TR  PS F HQE       +CS+
Sbjct: 121 MSFANTRSSPSFFSHQEQMKPRFLVCSY 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2013753	141	AT1G29420 "AT1G29420" [Arabido	0.918	0.957	0.535	5.8e-34
TAIR|locus:2013703	143	SAUR68 "AT1G29510" [Arabidopsi	0.952	0.979	0.503	6.7e-33
TAIR|locus:2013608	141	AT1G29450 "AT1G29450" [Arabido	0.945	0.985	0.503	3.7e-32
TAIR|locus:2013598	141	SAUR63 "AT1G29440" [Arabidopsi	0.877	0.914	0.522	6.9e-31
TAIR|locus:2013618	148	AT1G29460 "AT1G29460" [Arabido	0.863	0.858	0.530	6.9e-31
TAIR|locus:2013593	141	AT1G29430 "AT1G29430" [Arabido	0.884	0.921	0.510	1.1e-30
TAIR|locus:2180270	142	SAUR75 "AT5G27780" [Arabidopsi	0.891	0.922	0.503	6.2e-30
TAIR|locus:2013698	135	AT1G29500 "AT1G29500" [Arabido	0.911	0.992	0.5	7.9e-30
TAIR|locus:2013653	102	AT1G29490 "AT1G29490" [Arabido	0.680	0.980	0.490	2.1e-22
TAIR|locus:2034351	146	AT1G20470 "AT1G20470" [Arabido	0.476	0.479	0.442	6.9e-15

TAIR|locus:2013753 AT1G29420 "AT1G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 75/140 (53%), Positives = 105/140 (75%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFV 60
             M++ KKL+KM+KKWQ+ AA ++KRISF  +   D  S  +S+  EKG FVVY +D  RF 
Sbjct:     1 MMNTKKLLKMAKKWQQRAALRRKRISFHRS--TDTTS--SSTAAEKGCFVVYTSDRIRFA 56

Query:    61 IPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLM 120
              P++YL N+VI+EL K++E+EFG+P+ GPITLP D+VF+EY++ L+QR    D EKAL+ 
Sbjct:    57 FPISYLSNSVIQELLKISEEEFGIPTEGPITLPFDSVFLEYLIRLVQRRMDGDTEKALIT 116

Query:   121 SLATTRC-LPSSFIHQEHSN 139
             S+++TRC LP SF  QEHS+
Sbjct:   117 SISSTRCSLPCSFQLQEHSS 136

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013703 SAUR68 "AT1G29510" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 73/145 (50%), Positives = 102/145 (70%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFV 60
             MI+ KKL+KM+KKWQ+ AA  +KRISF  +    +    +SS  EKG FVVY  D+ RF 
Sbjct:     2 MINAKKLMKMAKKWQQRAALHRKRISFQRSNVFTS----SSSTVEKGCFVVYTADKIRFA 57

Query:    61 IPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLM 120
              P++YL N++++EL K++E+EFGLP+ GPITLP D+VF+EY++ LIQR    D EKALLM
Sbjct:    58 FPISYLSNSIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDGDTEKALLM 117

Query:   121 SLATTRC-LPSSFIHQEHSNQHSFI 144
             S+++ +C L  S + QE S Q   +
Sbjct:   118 SISSAKCSLQCSLLQQEQSTQQLLV 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013608 AT1G29450 "AT1G29450" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 73/145 (50%), Positives = 98/145 (67%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFV 60
             M++ KKLIKM+KKWQ+ AA  +KRISF  +      S  +S+  EKG FVVY TD  RF 
Sbjct:     1 MMNTKKLIKMAKKWQQRAALHRKRISFQRSS-----SATSSTAAEKGCFVVYTTDSTRFA 55

Query:    61 IPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLM 120
              PL+YL N+V +EL K++E+EFGLP+ GPIT P D+VF+EY++ L+QR    D EKALLM
Sbjct:    56 FPLSYLSNSVFQELLKISEEEFGLPTGGPITSPFDSVFLEYLIKLVQRRMDADTEKALLM 115

Query:   121 SLATTRCLPSSFIH-QEHSNQHSFI 144
             S+++ RC     +  QE S Q   +
Sbjct:   116 SISSARCSSQCSLKLQERSTQQLLV 140

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013598 SAUR63 "AT1G29440" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 71/136 (52%), Positives = 98/136 (72%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFV 60
             MI+ KKL+KM+KKWQ+ AA  +KRISF  +    +    +SS  EKG FVVY  D+ RF 
Sbjct:     1 MINAKKLMKMAKKWQQRAALHRKRISFQRSSVFTS----SSSTVEKGCFVVYTADKIRFA 56

Query:    61 IPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLM 120
              P++YL N+V++EL K++E++FGLP+ GPITLP D+ F+EY+V LIQR   +D EKALL+
Sbjct:    57 FPISYLSNSVVQELLKISEEDFGLPTEGPITLPFDSAFLEYLVKLIQRRMDEDTEKALLL 116

Query:   121 SLATTRCLPSSFIHQE 136
             S+++ RC   SF  QE
Sbjct:   117 SISSARC---SFQPQE 129

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009926 "auxin polar transport" evidence=IDA

GO:0080086 "stamen filament development" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2013618 AT1G29460 "AT1G29460" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 69/130 (53%), Positives = 92/130 (70%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFP---TTGPVDAESCRTSSVCEKGHFVVYATDEK 57
             MI+ KKL+KM+KKWQ+ AA K+KRISF    TT      +  +S+  EKG FVVY  D+ 
Sbjct:     1 MINTKKLLKMAKKWQQRAALKRKRISFQRSTTTTTTTTTTTSSSTAVEKGCFVVYTVDKI 60

Query:    58 RFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKA 117
             RF  PL+YL N+V  EL K++E+EFGL + GPITLP D+VF+EY++  I+R    D EKA
Sbjct:    61 RFAFPLSYLNNSVFEELLKISEEEFGLRAGGPITLPFDSVFLEYLIKFIERRMDGDTEKA 120

Query:   118 LLMSLATTRC 127
             LLMS+++ RC
Sbjct:   121 LLMSISSARC 130

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013593 AT1G29430 "AT1G29430" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 70/137 (51%), Positives = 99/137 (72%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFV 60
             MI+ KKL+K++KKWQ+ AA K+KRISF  +  +   S    +  EKG FVVY  D+ RF 
Sbjct:     2 MINAKKLMKLAKKWQQRAALKRKRISFQRSS-ITTSS---QTAVEKGCFVVYTADKIRFS 57

Query:    61 IPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLM 120
              PL+YL N +++EL K++E+EFGLP+ GPITLP D+ F+EY+++LIQR   +D EKALL+
Sbjct:    58 FPLSYLSNTIVQELLKISEEEFGLPTEGPITLPFDSAFLEYLINLIQRRMDEDTEKALLL 117

Query:   121 SLATTRCLPSSFIHQEH 137
             S+++ R   SSF  Q+H
Sbjct:   118 SISSAR---SSFQPQQH 131

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180270 SAUR75 "AT5G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 69/137 (50%), Positives = 97/137 (70%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFV 60
             MI+ K L+K++K WQ+ AA K+KRISF  +  +   S +T+   EKG FVVY  D+ RF 
Sbjct:     2 MINAKTLMKLAKTWQQRAALKRKRISFQRSS-ITTTSSQTT--VEKGCFVVYTADKIRFS 58

Query:    61 IPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLM 120
              PL+YL N +++EL K++E+EFGLP+ GPITLP D+VF+EY++ LIQR   +D EKALL 
Sbjct:    59 FPLSYLSNTIVQELLKISEEEFGLPTEGPITLPFDSVFLEYLIKLIQRRMDEDTEKALLW 118

Query:   121 SLATTRCLPSSFIHQEH 137
             S+++ RC   S   Q+H
Sbjct:   119 SISSARC---SLQPQQH 132

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013698 AT1G29500 "AT1G29500" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 72/144 (50%), Positives = 99/144 (68%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFV 60
             M++ KKLIKM +KWQ+ AA  +KRISF    P    S R+++V EKG FVVY  D  RF 
Sbjct:     1 MMNTKKLIKMFRKWQQRAALHRKRISFQR--P----STRSTTV-EKGCFVVYTADNTRFA 53

Query:    61 IPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRGAAKDVEKALLM 120
              P++YL N+V +E+ +++E+EFGLP+ GPITLP D+VF+EY++ LI+R    D EKALLM
Sbjct:    54 FPISYLSNSVFQEILEISEEEFGLPTGGPITLPFDSVFLEYLIKLIKRRMDGDTEKALLM 113

Query:   121 SLATTRCLPSSFIHQEHSNQHSFI 144
             S+++ RC   S   QE S Q   +
Sbjct:   114 SISSARC---SLQKQEQSTQQLLV 134

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

TAIR|locus:2013653 AT1G29490 "AT1G29490" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 51/104 (49%), Positives = 75/104 (72%)

Query:     1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEKRFV 60
             M++ KKL+KM+KKWQ+ AA ++KRISF  +    +    +SS  EKG FVVY  D+ RF 
Sbjct:     1 MMNTKKLMKMAKKWQQRAALRRKRISFQRSNSTTS----SSSAVEKGCFVVYTADQVRFA 56

Query:    61 IPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVS 104
              P++YL N+VI+EL K++E+EFG+P+ GPITLP D++   + +S
Sbjct:    57 FPISYLSNSVIQELLKISEEEFGIPTEGPITLPFDSIRFSWSIS 100

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2034351 AT1G20470 "AT1G20470" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 31/70 (44%), Positives = 49/70 (70%)

Query:    44 CEKGHFVVYATDEKRFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVV 103
             C+KGHF VY  + +RFV+PL YLK+ + + L +MAE+EFG   CGP+ +PCD   M++++
Sbjct:    23 CKKGHFAVYTREGRRFVLPLDYLKHPIFQVLLEMAEEEFGSTICGPLQVPCDGGLMDHIL 82

Query:   104 SLIQRGAAKD 113
              L++  +  D
Sbjct:    83 MLLRNKSLSD 92

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036232001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (142 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-30
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	1e-08
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	4e-08
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	5e-08

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  105 bits (265), Expect = 1e-30
 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 10/108 (9%)

Query: 1   MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATDEK-RF 59
           M S  K    +KKW   AAS + R S          S  +S+   KGHF VY  +E  RF
Sbjct: 1   MASRLKKASSAKKWILSAASGRSRGSS---------SKSSSADVPKGHFAVYVGEETRRF 51

Query: 60  VIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQ 107
           V+P++YL + + +EL   AE+EFG    G +T+PCD V  E+++ +++
Sbjct: 52  VVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 46  KGHFVVYATDEK-RFVIPLAYLKNNVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVS 104
           KGHF VY  + + R+++P+++L +   + L + AE+EFG      +T+PC+ V    + S
Sbjct: 42  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTS 101

Query: 105 LI 106
           +I
Sbjct: 102 MI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 48.2 bits (114), Expect = 4e-08
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 40  TSSVCEKGHFVVYATDE---KRFVIPLAYLKNNVIRELFKMAEDEFGL-PSCGPITLPCD 95
           TS +  KGH  VY  ++   KRFV+P++YL + + RE    AE+E G   S G +T+PC 
Sbjct: 35  TSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCR 94

Query: 96  AVFMEYVVS 104
                ++++
Sbjct: 95  EESFLHLIT 103

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 47.8 bits (113), Expect = 5e-08
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 37  SCRTSSVCEKGHFVVYATDE-----KRFVIPLAYLKNNVIRELFKMAEDEFGLP-SCGPI 90
           S  +S    KGH  VY  ++     KRFV+P+++L +   +E    AE+EFG     G +
Sbjct: 28  SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

Query: 91  TLPC-DAVFMEYVVSLIQ 107
           T+PC + VF++ + S + 
Sbjct: 88  TIPCREEVFLDLIASRLH 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PLN03220	105	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	84.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	82.2

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=1.2e-37  Score=228.37  Aligned_cols=99  Identities=40%  Similarity=0.730  Sum_probs=87.3

Q ss_pred             CCChHHHHHHHHHHhhhhhcccCcccCCCCCCCCCCCCcCCCccCCCeEEEEecC-ceeeeEeccCcCcHHHHHHHHHhH
Q 032077            1 MISPKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATD-EKRFVIPLAYLKNNVIRELFKMAE   79 (147)
Q Consensus         1 m~~~~kL~~~akKWqk~aa~~rkr~s~~~~~~~~~~~~~~~~~vpkG~~~VYVGe-~~RfvVp~~yLnhP~F~~LL~~ae   79 (147)
                      ||+.+|..+.++||++.++..+++.+..+..        ...++|+||||||||+ ++||+||++|||||+|++||++||
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~--------~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~ae   72 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSS--------SESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAE   72 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhccccccccccc--------ccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHh
Confidence            9999999999999998876665544332221        1368999999999997 899999999999999999999999


Q ss_pred             HhcCCCCCCCeeecCcHHHHHHHHHHHh
Q 032077           80 DEFGLPSCGPITLPCDAVFMEYVVSLIQ  107 (147)
Q Consensus        80 eEfG~~~~G~L~IPC~~~~Fe~vl~li~  107 (147)
                      |||||+++|+|+|||++++|++++|+|+
T Consensus        73 eEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   73 EEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             hhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            9999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.3e-35  Score=217.57  Aligned_cols=91  Identities=29%  Similarity=0.541  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHhhhhhcccCcccCCCCCCCCCCCCcCCCccCCCeEEEEecC-ceeeeEeccCcCcHHHHHHHHHhHHhc
Q 032077            4 PKKLIKMSKKWQKLAASKQKRISFPTTGPVDAESCRTSSVCEKGHFVVYATD-EKRFVIPLAYLKNNVIRELFKMAEDEF   82 (147)
Q Consensus         4 ~~kL~~~akKWqk~aa~~rkr~s~~~~~~~~~~~~~~~~~vpkG~~~VYVGe-~~RfvVp~~yLnhP~F~~LL~~aeeEf   82 (147)
                      ..+|+++.|+|++++..+.        .  + . -..+.+||+||||||||+ ++||+||++|||||+|++||++|||||
T Consensus        12 ~~~~kq~l~r~~s~~~~~~--------~--~-~-~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQG--------Y--D-E-DGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             HHHHHHHHHHHHHhcccCC--------c--c-c-ccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            4678999999987753210        0  0 0 124678999999999997 589999999999999999999999999


Q ss_pred             CCCCCCCeeecCcHHHHHHHHHHH
Q 032077           83 GLPSCGPITLPCDAVFMEYVVSLI  106 (147)
Q Consensus        83 G~~~~G~L~IPC~~~~Fe~vl~li  106 (147)
                      ||+++|+|+|||++++|++++|+|
T Consensus        80 Gf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         80 GFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCCCcEEEeCCHHHHHHHHHHh
Confidence            999999999999999999999998

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=9.3e-32  Score=200.06  Aligned_cols=69  Identities=36%  Similarity=0.696  Sum_probs=63.7

Q ss_pred             CCcCCCccCCCeEEEEecC---ceeeeEeccCcCcHHHHHHHHHhHHhcCCCC-CCCeeecCcHHHHHHHHHH
Q 032077           37 SCRTSSVCEKGHFVVYATD---EKRFVIPLAYLKNNVIRELFKMAEDEFGLPS-CGPITLPCDAVFMEYVVSL  105 (147)
Q Consensus        37 ~~~~~~~vpkG~~~VYVGe---~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~vl~l  105 (147)
                      ++..+.+|||||||||||+   ++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|++++..
T Consensus        32 ~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         32 STTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            3455789999999999996   7999999999999999999999999999997 6999999999999999864

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=1e-31  Score=199.00  Aligned_cols=67  Identities=33%  Similarity=0.704  Sum_probs=62.3

Q ss_pred             CcCCCccCCCeEEEEecC-----ceeeeEeccCcCcHHHHHHHHHhHHhcCCCC-CCCeeecCcHHHHHHHHH
Q 032077           38 CRTSSVCEKGHFVVYATD-----EKRFVIPLAYLKNNVIRELFKMAEDEFGLPS-CGPITLPCDAVFMEYVVS  104 (147)
Q Consensus        38 ~~~~~~vpkG~~~VYVGe-----~~RfvVp~~yLnhP~F~~LL~~aeeEfG~~~-~G~L~IPC~~~~Fe~vl~  104 (147)
                      ++.+.+|||||||||||+     ++|||||++|||||+|++||++|||||||++ +|+|+|||+++.|++++.
T Consensus        29 ~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         29 SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            345679999999999996     6999999999999999999999999999998 699999999999999874

>PRK02899 adaptor protein; Provisional

Probab=84.97  E-value=0.75  Score=37.32  Aligned_cols=25  Identities=28%  Similarity=0.693  Sum_probs=21.7

Q ss_pred             cHHHHHHHHHhHHhcCCCCCCCeee
Q 032077           68 NNVIRELFKMAEDEFGLPSCGPITL   92 (147)
Q Consensus        68 hP~F~~LL~~aeeEfG~~~~G~L~I   92 (147)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            4578888999999999999999864

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=82.20  E-value=0.68  Score=32.05  Aligned_cols=54  Identities=17%  Similarity=0.247  Sum_probs=40.4

Q ss_pred             ceeeeEeccCcC-c--HHHHHHHHHhHHhcCCCCCCCeeecCcHHHHHHHHHHHhcC
Q 032077           56 EKRFVIPLAYLK-N--NVIRELFKMAEDEFGLPSCGPITLPCDAVFMEYVVSLIQRG  109 (147)
Q Consensus        56 ~~RfvVp~~yLn-h--P~F~~LL~~aeeEfG~~~~G~L~IPC~~~~Fe~vl~li~~~  109 (147)
                      +++|.++.+.|. +  ..|..++........-+.+|.+-|-++...|++|+..++.+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            578888887776 4  47888888653232334679999999999999999999983

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00