Citrus Sinensis ID: 032100

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MEEDTKESKNRYPHASSSNEGTVIVGLKILAQISQSRSNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRVFLEELR
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEcEEEEccccccccEEccccccccccccccccccccccccHHHHHcccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEEEEEEEEcccccccEEEccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccEEEHHHcc
Coil and Loop (DISEMBL)
meedtkesknryphasssnegtVIVGLKILAQISQsrsnvvvkpalvstrsdsrrrpsasgdqyYCYLKSCYLcnknlsldkevymyrgdqgfcsiecrDRQIFLDEMKELEASRKQFLKSNnrhcnigadrrhhrgeTRVFLEELR
Flexible Loop (DISEMBL)
meedtkesknryphasssnegtvIVGLKILAQisqsrsnvvvkpalvstrsdsrrrpsasgdqyYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQflksnnrhcnigadrrhhrgetrvfleelr
Low Complexity Region (SEG)
MEEDTKESKNRYPHASSSNEGTVIVGLKILAQISQSRSNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRVFLEELR
Disordered region (IsUnstruct)
*********************TVIVGLKILAQISQ****VVV********************QYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEM***************************************
Disordered Region (DISOPRED)
****************************************************************YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQI****************************************EEL*
Disordered Region (DISEMBL)
******************NEGTVIVGLKILAQISQSRSNVVVKPAL*************SGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRVFLEELR
Disordered Region (DISPRO)
*******************EGTVIVGLKILAQISQSRSNVVVKPALVS*************DQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELE**********************************R
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEDTKESKNRYPHASSSNEGTVIVGLKILAQISQSRSNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRVFLEELR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
255586772	155	conserved hypothetical protein [Ricinus	0.884	0.838	0.553	7e-30
224074097	130	predicted protein [Populus trichocarpa]	0.775	0.876	0.56	1e-24
359806545	156	uncharacterized protein LOC100816015 [Gl	0.897	0.846	0.455	1e-24
356520163	156	PREDICTED: uncharacterized protein LOC10	0.897	0.846	0.462	4e-24
357514285	121	hypothetical protein MTR_8g022950 [Medic	0.741	0.900	0.504	4e-23
224119682	104	predicted protein [Populus trichocarpa]	0.680	0.961	0.590	2e-22
225441995	162	PREDICTED: uncharacterized protein LOC10	0.938	0.851	0.466	2e-22
356511905	156	PREDICTED: uncharacterized protein LOC10	0.897	0.846	0.428	3e-21
18404687	126	uncharacterized protein [Arabidopsis tha	0.768	0.896	0.452	4e-18
297847796	126	hypothetical protein ARALYDRAFT_892440 [	0.768	0.896	0.460	1e-17

>gi|255586772|ref|XP_002534004.1| conserved hypothetical protein [Ricinus communis] gi|223525994|gb|EEF28375.1| conserved hypothetical protein [Ricinus communis]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 94/139 (67%), Gaps = 9/139 (6%)

Query: 12  YPHASSSNEG-TVIVGLKILAQISQ--SRSNVVVKPALVSTRSDSRRRPSASGDQYYCYL 68
           Y    SS +G  V+VGL+ L  +S+  S+SNVV K A+        RRP     +  CYL
Sbjct: 5   YSSRESSEKGLMVLVGLQTLVHVSEGKSKSNVVTKSAMRKAPHHRHRRPHHQSTES-CYL 63

Query: 69  KSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNI 128
           K+C+LCNKNLSLDK++YMYRGDQGFCSIECR+RQI LDEM+ELEAS  Q  KS NRHC+ 
Sbjct: 64  KTCHLCNKNLSLDKDIYMYRGDQGFCSIECRNRQIVLDEMRELEASTVQMRKSYNRHCSS 123

Query: 129 GADRRHHRGETRVFLEELR 147
                  R ETR+ LEE+R
Sbjct: 124 AG-----RHETRLILEEIR 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074097|ref|XP_002304251.1| predicted protein [Populus trichocarpa] gi|222841683|gb|EEE79230.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 81/125 (64%), Gaps = 11/125 (8%)

Query: 23  VIVGLKILAQISQSRSNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLDK 82
           ++ GL+ L  +    SNVV K AL      + R    +    YCYLKSCYLCNK LSLDK
Sbjct: 1   MVAGLQSLL-LEGDISNVVTKSAL-----KTHRLQVQASSIKYCYLKSCYLCNKILSLDK 54

Query: 83  EVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRVF 142
           +VYMYRGDQGFCSIECR+RQI LDEM+ELEAS  + LK    HC+  A R     ETR  
Sbjct: 55  DVYMYRGDQGFCSIECRNRQIILDEMRELEASSNERLKYYE-HCSTTAGRH----ETRRV 109

Query: 143 LEELR 147
           LEELR
Sbjct: 110 LEELR 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806545|ref|NP_001241006.1| uncharacterized protein LOC100816015 [Glycine max] gi|255647062|gb|ACU23999.1| unknown [Glycine max]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 93/147 (63%), Gaps = 15/147 (10%)

Query: 3   EDTKESKNRYPHASSSNEGTVIVGLKILAQISQSR--SNVVVKPALVSTRSDSRRRPSAS 60
           ++ K    R  H  S     + VGL++L QI+ S+  SNV++K A+       R+    S
Sbjct: 15  QEGKHVNKRRKHVRSFESTNMDVGLRLLPQITSSKNTSNVLLKSAM-------RKTNQQS 67

Query: 61  GDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLK 120
             Q +C+LK+C LCNK LS DK++YMYRGDQGFCS+ECR+RQI LD+M+ELE S K+ + 
Sbjct: 68  IPQDFCFLKTCNLCNKQLSPDKDIYMYRGDQGFCSVECRNRQIVLDDMRELENSTKKIVA 127

Query: 121 SNNRHCNIGADRRHHRGETRVFLEELR 147
           +  R C+  A R     ETR+ LE+LR
Sbjct: 128 A-YRQCSSEAHR-----ETRLILEDLR 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520163|ref|XP_003528734.1| PREDICTED: uncharacterized protein LOC100820059 [Glycine max]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 91/147 (61%), Gaps = 15/147 (10%)

Query: 3   EDTKESKNRYPHASSSNEGTVIVGLKILAQI--SQSRSNVVVKPALVSTRSDSRRRPSAS 60
           ++ K    R  H  S     + VGL++L QI  S S SNV++K A+       R+    S
Sbjct: 15  QEGKHVNKRRKHVRSFESTNMDVGLRLLPQITSSNSTSNVLLKSAV-------RKANQQS 67

Query: 61  GDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLK 120
             Q +C+LK+C LCNK LS DK++YMY  DQGFCS+ECR+RQI LDEM+ELE+S KQ + 
Sbjct: 68  IPQDFCFLKTCNLCNKQLSPDKDIYMYSRDQGFCSVECRNRQIVLDEMRELESSTKQMVA 127

Query: 121 SNNRHCNIGADRRHHRGETRVFLEELR 147
           +  R C+  A     R ETR+ LE+LR
Sbjct: 128 A-YRQCSSEA-----RSETRLILEDLR 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514285|ref|XP_003627431.1| hypothetical protein MTR_8g022950 [Medicago truncatula] gi|355521453|gb|AET01907.1| hypothetical protein MTR_8g022950 [Medicago truncatula]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/125 (50%), Positives = 85/125 (68%), Gaps = 16/125 (12%)

Query: 25  VGLKILAQI--SQSRSNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLDK 82
           VGL +L QI  S+S SN++VK A+        ++ + +    +C+LK+C LCNK LS DK
Sbjct: 3   VGLSLLLQIISSKSNSNILVKSAV--------KKSNQTIPMDFCFLKTCNLCNKQLSQDK 54

Query: 83  EVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRVF 142
           ++YMYRGDQGFCSIECR+RQI LDEMKELE S K+ ++   R C+  A     R ETR+ 
Sbjct: 55  DIYMYRGDQGFCSIECRNRQIVLDEMKELEISTKKMVQC-YRQCSNEA-----RRETRLI 108

Query: 143 LEELR 147
           LE++R
Sbjct: 109 LEDIR 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119682|ref|XP_002331220.1| predicted protein [Populus trichocarpa] gi|222873341|gb|EEF10472.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 76/110 (69%), Gaps = 10/110 (9%)

Query: 38  SNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIE 97
           SNVV K AL +     R R  A+  +Y CYL SC LCNK LS DK++YMYRGDQGFCS E
Sbjct: 1   SNVVTKSALKT----QRLRVQATTIEY-CYLISCNLCNKMLSPDKDIYMYRGDQGFCSTE 55

Query: 98  CRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRVFLEELR 147
           CR+RQI LDEM+ELEAS K+ LKS  +HC+  A R     ETR  LE+LR
Sbjct: 56  CRNRQIVLDEMRELEASTKERLKS-YKHCSTAAGRH----ETRRVLEDLR 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441995|ref|XP_002266506.1| PREDICTED: uncharacterized protein LOC100253160 [Vitis vinifera] gi|297742935|emb|CBI35802.3| unnamed protein product [Vitis vinifera]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 91/150 (60%), Gaps = 12/150 (8%)

Query: 1   MEEDTKESKNR--YP-HASSSNEGTVIVGLKILAQISQSRSNVVVKPALVSTRSDSRRRP 57
           +EE+  E K R  +P H S        VGL+IL Q S   SN+V+K A    R  +   P
Sbjct: 6   VEEEGHEGKRRPNFPGHESFKRSSVDPVGLRILTQFSHGESNLVLKSA-CRLRVPTPPPP 64

Query: 58  SASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQ 117
           S +  +  C+LKSCYLCNK L+ DK++YM R D+GFCS+ECR+RQI +DE KE+E S K+
Sbjct: 65  SGASPES-CFLKSCYLCNKELTPDKDIYM-RSDEGFCSVECRNRQIVMDETKEIETSTKK 122

Query: 118 FLKSNNRHCNIGADRRHHRGETRVFLEELR 147
            L S +RHC     R     ET V LE+LR
Sbjct: 123 ILAS-SRHC-----RSAGGCETCVLLEDLR 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511905|ref|XP_003524662.1| PREDICTED: uncharacterized protein LOC100806674 [Glycine max]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 89/147 (60%), Gaps = 15/147 (10%)

Query: 3   EDTKESKNRYPHASSSNEGTVIVGLKILAQISQSR--SNVVVKPALVSTRSDSRRRPSAS 60
           ++ K    R  H  S     + VGL++L QI+ S   SNV++K A+       R+    S
Sbjct: 15  QEGKHVNKRRKHVRSFESTNMDVGLRLLPQITSSNNTSNVLLKSAV-------RKANQQS 67

Query: 61  GDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLK 120
             Q  C+LK+C LCNK L+ +K++YMY  DQGFCS+EC +RQI LDEM+ELE+S K+ + 
Sbjct: 68  IPQDLCFLKTCNLCNKQLTPNKDIYMYSRDQGFCSVECWNRQIVLDEMRELESSTKKMVA 127

Query: 121 SNNRHCNIGADRRHHRGETRVFLEELR 147
           +  R C+  A     R ETR+ LE+LR
Sbjct: 128 A-YRQCSSEA-----RSETRLILEDLR 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404687|ref|NP_564644.1| uncharacterized protein [Arabidopsis thaliana] gi|186490813|ref|NP_001117487.1| uncharacterized protein [Arabidopsis thaliana] gi|26452312|dbj|BAC43242.1| unknown protein [Arabidopsis thaliana] gi|28416881|gb|AAO42971.1| At1g53885 [Arabidopsis thaliana] gi|332194894|gb|AEE33015.1| uncharacterized protein [Arabidopsis thaliana] gi|332194900|gb|AEE33021.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 82/126 (65%), Gaps = 13/126 (10%)

Query: 23  VIVGLKILAQISQSR-SNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLD 81
           + VGL+++ + S+ + +N+V+K +L   RS+    P+ S     C+LK+C+LCNK L  D
Sbjct: 4   ISVGLQLVTRDSREKLNNIVIKSSLRLNRSN----PNISE---LCFLKTCHLCNKQLHQD 56

Query: 82  KEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRV 141
           K+VYMYRGD GFCS ECR+ Q+ +D+ KELEAS K  L S  R CN GA     + E+R 
Sbjct: 57  KDVYMYRGDLGFCSRECRESQMLIDDRKELEASTKMMLAS-YRRCNNGAG----KSESRN 111

Query: 142 FLEELR 147
             ++LR
Sbjct: 112 LFDDLR 117

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847796|ref|XP_002891779.1| hypothetical protein ARALYDRAFT_892440 [Arabidopsis lyrata subsp. lyrata] gi|297337621|gb|EFH68038.1| hypothetical protein ARALYDRAFT_892440 [Arabidopsis lyrata subsp. lyrata]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 78/126 (61%), Gaps = 13/126 (10%)

Query: 23  VIVGLKILAQISQSR-SNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLD 81
           + VGL+++   S+ + +N+V+K +L   R +    P  S     C+LK+C+LCNK L  D
Sbjct: 4   ISVGLQLVTADSKEKPNNIVIKSSLRINRFN----PIISE---LCFLKTCHLCNKQLRQD 56

Query: 82  KEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRV 141
           K+VYMYRGD GFCS ECR+ QI  DE KELEAS K  L S  R CN GA     + E+R 
Sbjct: 57  KDVYMYRGDLGFCSRECRESQILFDERKELEASTKMMLAS-YRRCNSGA----GKSESRD 111

Query: 142 FLEELR 147
             ++LR
Sbjct: 112 LFDDLR 117

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:505006184	126	AT1G53885 "AT1G53885" [Arabido	0.768	0.896	0.452	1.1e-21
TAIR|locus:4515102678	126	AT1G53903 [Arabidopsis thalian	0.768	0.896	0.452	1.1e-21
TAIR|locus:2155174	150	AT5G49120 "AT5G49120" [Arabido	0.714	0.7	0.297	1.2e-12
TAIR|locus:2030611	147	AT1G22160 "AT1G22160" [Arabido	0.428	0.428	0.484	1e-11
TAIR|locus:2177739	113	AT5G65040 "AT5G65040" [Arabido	0.312	0.407	0.543	1.2e-10
TAIR|locus:2029421	162	AT1G78020 [Arabidopsis thalian	0.571	0.518	0.372	1.5e-10
TAIR|locus:2042416	93	AT2G44670 "AT2G44670" [Arabido	0.387	0.612	0.465	2e-10
TAIR|locus:2129331	159	AT4G17670 "AT4G17670" [Arabido	0.401	0.371	0.457	2.5e-10
TAIR|locus:2171047	177	AT5G47060 "AT5G47060" [Arabido	0.394	0.327	0.482	4.1e-10
TAIR|locus:2027278	222	AT1G74940 "AT1G74940" [Arabido	0.680	0.450	0.349	6.6e-10

TAIR|locus:505006184 AT1G53885 "AT1G53885" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 57/126 (45%), Positives = 82/126 (65%)

Query:    23 VIVGLKILAQISQSR-SNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLD 81
             + VGL+++ + S+ + +N+V+K +L   RS+    P+ S     C+LK+C+LCNK L  D
Sbjct:     4 ISVGLQLVTRDSREKLNNIVIKSSLRLNRSN----PNISE---LCFLKTCHLCNKQLHQD 56

Query:    82 KEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRV 141
             K+VYMYRGD GFCS ECR+ Q+ +D+ KELEAS K  L S  R CN GA +     E+R 
Sbjct:    57 KDVYMYRGDLGFCSRECRESQMLIDDRKELEASTKMMLASYRR-CNNGAGK----SESRN 111

Query:   142 FLEELR 147
               ++LR
Sbjct:   112 LFDDLR 117

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515102678 AT1G53903 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 57/126 (45%), Positives = 82/126 (65%)

Query:    23 VIVGLKILAQISQSR-SNVVVKPALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLD 81
             + VGL+++ + S+ + +N+V+K +L   RS+    P+ S     C+LK+C+LCNK L  D
Sbjct:     4 ISVGLQLVTRDSREKLNNIVIKSSLRLNRSN----PNISE---LCFLKTCHLCNKQLHQD 56

Query:    82 KEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRHCNIGADRRHHRGETRV 141
             K+VYMYRGD GFCS ECR+ Q+ +D+ KELEAS K  L S  R CN GA +     E+R 
Sbjct:    57 KDVYMYRGDLGFCSRECRESQMLIDDRKELEASTKMMLASYRR-CNNGAGK----SESRN 111

Query:   142 FLEELR 147
               ++LR
Sbjct:   112 LFDDLR 117

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2155174 AT5G49120 "AT5G49120" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 33/111 (29%), Positives = 66/111 (59%)

Query:     1 MEEDTKESKNRYPHASSSNEGTVIVGLKILAQISQSRSNVVVKPALVSTRSDSRRRPSAS 60
             +E     + N   + +++N+  +  G+ I  ++  +++N++V  A+ +  ++ RR    S
Sbjct:     8 LEMTNNNNNNNNNNNNNNNKNPLSEGVLISPKVV-NKANIIVTTAVTTDTTNLRRCYQDS 66

Query:    61 GDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKEL 111
             G     +L+ C+LC + L   K++YMY+GD+ FCS+ECR +Q+ +DE + L
Sbjct:    67 G-----FLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEEESL 112

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2030611 AT1G22160 "AT1G22160" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 32/66 (48%), Positives = 43/66 (65%)

Query:    45 ALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIF 104
             A+VS R   RR    S D    +L+SC LC + L   +++YMYRGD+ FCS+ECR +QI 
Sbjct:    59 AMVSPRGTQRRH---SSDYSEDFLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQIT 115

Query:   105 LDEMKE 110
             +DE KE
Sbjct:   116 VDERKE 121

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177739 AT5G65040 "AT5G65040" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query:    64 YYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMK 109
             Y  +LK+C LCN++L   +++YMYRG+  FCS+ECR++QI LDE K
Sbjct:    54 YDDFLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDEKK 99

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2029421 AT1G78020 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 32/86 (37%), Positives = 50/86 (58%)

Query:    26 GLKILAQISQSRSNVVVKP-ALVSTRSDSRRRPSASGDQYYCYLKSCYLCNKNLSLDKEV 84
             G  + A + Q+R  +  +  ++V+ R + RR      D  + +L+SC LC + L   +++
Sbjct:    48 GQAVTAAVDQNRGFLDQRLLSMVTPRGNLRRHSGDFSDAGH-FLRSCALCERLLVPGRDI 106

Query:    85 YMYRGDQGFCSIECRDRQIFLDEMKE 110
             YMYRGD+ FCS ECR  Q+  DE KE
Sbjct:   107 YMYRGDKAFCSSECRQEQMAQDERKE 132

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2042416 AT2G44670 "AT2G44670" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query:    67 YLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRK-QFLKSNN 123
             +L+SC LC K+L L+ +++MYRGD+ FCS ECR+ QI  DE KE +  +  + L+ N+
Sbjct:    16 FLESCSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESDEAKERKWKKSSRSLRKNS 73

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129331 AT4G17670 "AT4G17670" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query:    67 YLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNRH 125
             +L SC+LC K L  +++++MYRGD  FCS ECR+ QI  DE KE + S    +K+  R+
Sbjct:    76 FLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEAKEKKQSLSTSVKAMRRN 134

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171047 AT5G47060 "AT5G47060" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query:    67 YLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASRKQFLKSNNR 124
             +L SC+LC K L  ++++YMYRGD  FCS ECR  QI  DE KE + +    +KS  R
Sbjct:    97 FLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKEKKQNLSHSVKSAMR 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027278 AT1G74940 "AT1G74940" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/103 (34%), Positives = 50/103 (48%)

Query:     8 SKNRYPHASSSNEGTVIVGLKILAQISQSRSNVVVKPALVSTRSDSRRRPSASGDQYYCY 67
             S   Y + +S N  T +       ++S++    V KP +         R S  G   +  
Sbjct:    93 SDEEYTYVTSPNGPTKVYYNDDGFELSENDYRRVHKPMVTVDEPPVIERQSVRGPTEF-- 150

Query:    68 LKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKE 110
             L SC LC K L   K++YMY+G+ GFCS ECR  QI  DE +E
Sbjct:   151 LSSCCLCKKKLQ-GKDIYMYKGEMGFCSAECRSVQIMNDERQE 192

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.III.1292.1 hypothetical protein (102 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
pfam04570	59	pfam04570, DUF581, Protein of unknown function (DU	3e-21

>gnl|CDD|218153 pfam04570, DUF581, Protein of unknown function (DUF581)

 Score = 80.8 bits (200), Expect = 3e-21
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 52  DSRRRPSASGDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKE 110
           D        G     +L SC+LC K L   K++YMYRG++ FCS ECR +Q+ +DE KE
Sbjct: 1   DPSAAGDGGGSPTGHFLSSCFLCKKKLGPGKDIYMYRGEKAFCSEECRQQQMEMDEAKE 59

Family of uncharacterized proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PF04570	58	DUF581: Protein of unknown function (DUF581); Inte	99.94
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	95.39
COG4068	64	Uncharacterized protein containing a Zn-ribbon [Fu	92.41
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	92.01
PF06467	43	zf-FCS: MYM-type Zinc finger with FCS sequence mot	91.43
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	91.31
PF04945	47	YHS: YHS domain; InterPro: IPR007029 This short pr	80.81
PRK00418	62	DNA gyrase inhibitor; Reviewed	80.57

>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins

Probab=99.94  E-value=2e-27  Score=162.06  Aligned_cols=50  Identities=52%  Similarity=0.982  Sum_probs=47.1

Q ss_pred             CCchhhhhhccccccCCCCCCCceEEEcCCccccChhhHHHHHHHHHHHH
Q 032100           61 GDQYYCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKE  110 (147)
Q Consensus        61 g~~~~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~qI~~DE~~E  110 (147)
                      ..++.+||++|++|+|+|.+|+||||||||+||||.|||++||++||++|
T Consensus         9 ~~~~~~FL~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~qi~~de~~E   58 (58)
T PF04570_consen    9 PFPSEHFLSFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQILMDEEKE   58 (58)
T ss_pred             CCCcHHHHHHHHccCCCCCCCCCeeeeccccccccHHHHHHHHHHHHhcC
Confidence            34679999999999999999999999999999999999999999999875

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=95.39  E-value=0.018  Score=39.65  Aligned_cols=27  Identities=37%  Similarity=0.818  Sum_probs=22.6

Q ss_pred             hccccccCCCCCCCceEEEcCCccccChhhHHHHHH
Q 032100           69 KSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIF  104 (147)
Q Consensus        69 ~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~qI~  104 (147)
                      +-|-.|.+++.+         |..|||.+|++....
T Consensus         4 kHC~~CG~~Ip~---------~~~fCS~~C~~~~~k   30 (59)
T PF09889_consen    4 KHCPVCGKPIPP---------DESFCSPKCREEYRK   30 (59)
T ss_pred             CcCCcCCCcCCc---------chhhhCHHHHHHHHH
Confidence            458999999996         689999999987543

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]

Probab=92.41  E-value=0.19  Score=35.49  Aligned_cols=36  Identities=31%  Similarity=0.618  Sum_probs=26.8

Q ss_pred             hccccccCCCCCCCceEEEcCCccccChhhHHHHHHHHHHHHHHHHH
Q 032100           69 KSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKELEASR  115 (147)
Q Consensus        69 ~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~qI~~DE~~E~~~s~  115 (147)
                      +-|--|.+.+.+         |.-|||++|++  |+..|++.....+
T Consensus         9 ~HC~VCg~aIp~---------de~~CSe~C~e--il~ker~R~r~~~   44 (64)
T COG4068           9 RHCVVCGKAIPP---------DEQVCSEECGE--ILNKERKRQRNFM   44 (64)
T ss_pred             ccccccCCcCCC---------ccchHHHHHHH--HHHHHHHHHHHHH
Confidence            458899999996         46799999974  7777766554443

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=92.01  E-value=0.071  Score=34.63  Aligned_cols=30  Identities=27%  Similarity=0.698  Sum_probs=24.5

Q ss_pred             hhhhccccccCCCCCCCceEEEcCCccccChhhHHH
Q 032100           66 CYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDR  101 (147)
Q Consensus        66 ~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~  101 (147)
                      .|+.+|-.|-|.+.+..      .+..+||++||..
T Consensus         4 ~F~~yC~~Cdk~~~~~~------~~~lYCSe~Cr~~   33 (43)
T PF12855_consen    4 AFNDYCIVCDKQIDPPD------DGSLYCSEECRLK   33 (43)
T ss_pred             hhhhHHHHhhccccCCC------CCccccCHHHHhH
Confidence            79999999999995422      2467899999976

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.43  E-value=0.15  Score=30.97  Aligned_cols=34  Identities=29%  Similarity=0.695  Sum_probs=21.7

Q ss_pred             hhccccccCCCCCCCc--eEEEcCC-ccccChhhHHH
Q 032100           68 LKSCYLCNKNLSLDKE--VYMYRGD-QGFCSIECRDR  101 (147)
Q Consensus        68 L~~C~lCkK~L~~~kD--IyMYRGe-~AFCS~ECR~~  101 (147)
                      ...|..|++.+....+  +..|.|. .-|||..|+..
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~g~~~~FCS~~C~~~   42 (43)
T PF06467_consen    6 MKTCSYCKKYIPNKPTMIEVQYDGKMKQFCSQSCLSS   42 (43)
T ss_dssp             CEE-TTT--EEECCC----EE-TTTTSCCSSHHHHHH
T ss_pred             CCcCcccCCcccCCCccccccccCcccChhCHHHHhh
Confidence            4579999999975555  6777763 58999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=91.31  E-value=0.18  Score=35.87  Aligned_cols=32  Identities=28%  Similarity=0.741  Sum_probs=28.2

Q ss_pred             hccccccCCCCCCCceEEEcCCcc---ccChhhHH
Q 032100           69 KSCYLCNKNLSLDKEVYMYRGDQG---FCSIECRD  100 (147)
Q Consensus        69 ~~C~lCkK~L~~~kDIyMYRGe~A---FCS~ECR~  100 (147)
                      ..|++|.++|.||.-|+.-++|..   |||..|+.
T Consensus         4 ~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k   38 (66)
T COG2075           4 RVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEK   38 (66)
T ss_pred             eEecCcCCccCCCceEEEEecCCeEEEEechhHHH
Confidence            469999999999998877788764   99999998

>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long

Probab=80.81  E-value=0.99  Score=28.37  Aligned_cols=29  Identities=24%  Similarity=0.598  Sum_probs=19.2

Q ss_pred             cccCCC-CCCCceEEEcCCc-cccChhhHHH
Q 032100           73 LCNKNL-SLDKEVYMYRGDQ-GFCSIECRDR  101 (147)
Q Consensus        73 lCkK~L-~~~kDIyMYRGe~-AFCS~ECR~~  101 (147)
                      -|...| ......+.|.|.. -|||.+|++.
T Consensus         5 vcg~~v~~~~~~~~~y~G~~Y~FCS~~C~~~   35 (47)
T PF04945_consen    5 VCGMKVPGNAAYSVEYNGRTYYFCSEGCKEK   35 (47)
T ss_dssp             GGG-BE-----EEEEETTEEEEESSHHHHHH
T ss_pred             CCCCEEccCccEEEEECCEEEEEcCHHHHHH
Confidence            477788 2235677888854 7999999986

It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=80.57  E-value=0.96  Score=31.61  Aligned_cols=38  Identities=29%  Similarity=0.468  Sum_probs=24.7

Q ss_pred             hhccccccCCCCCCCceEEEcCCccccChhhHHHHHHHHHHHHH
Q 032100           68 LKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDRQIFLDEMKEL  111 (147)
Q Consensus        68 L~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~qI~~DE~~E~  111 (147)
                      ...|--|+|... +..-.-|   .+|||..|+.  |.+-++...
T Consensus         6 ~v~CP~C~k~~~-w~~~~~~---rPFCS~RCk~--IDLg~W~~e   43 (62)
T PRK00418          6 TVNCPTCGKPVE-WGEISPF---RPFCSKRCQL--IDLGEWAAE   43 (62)
T ss_pred             cccCCCCCCccc-ccCCCCc---CCcccHHHHh--hhHHHHHcC
Confidence            357999999875 2222223   4899999975  566555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	90.05
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	89.9
2l8e_A	49	Polyhomeotic-like protein 1; DNA binding protein;	89.17
1lv3_A	68	Hypothetical protein YACG; zinc finger, rubredoxin	81.07

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=90.05  E-value=0.19  Score=34.40  Aligned_cols=35  Identities=29%  Similarity=0.553  Sum_probs=30.0

Q ss_pred             hhhhccccccCCCCCCCceEEEcCC-ccccChhhHH
Q 032100           66 CYLKSCYLCNKNLSLDKEVYMYRGD-QGFCSIECRD  100 (147)
Q Consensus        66 ~FL~~C~lCkK~L~~~kDIyMYRGe-~AFCS~ECR~  100 (147)
                      .+-..|..|+|.|..|+--|-..|+ .-|||..|=.
T Consensus        18 ~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~   53 (62)
T 2das_A           18 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   53 (62)
T ss_dssp             CSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             ccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence            3567899999999999999998886 4699999954

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=89.90  E-value=0.16  Score=32.07  Aligned_cols=32  Identities=34%  Similarity=0.804  Sum_probs=24.2

Q ss_pred             hhhhhccccccCCCCCCCceEEEcCCccccChhhHH
Q 032100           65 YCYLKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRD  100 (147)
Q Consensus        65 ~~FL~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~  100 (147)
                      ..|  .|..|+++|. +. .|+-++.++||+.+|-.
T Consensus        31 ~CF--~C~~C~~~L~-~~-~f~~~~g~~yC~~~C~~   62 (65)
T 2iyb_E           31 ECF--LCSCCSKCLI-GQ-KFMPVEGMVFCSVECKK   62 (65)
T ss_dssp             TTS--BCTTTCCBCT-TS-CCEEETTEEESSHHHHH
T ss_pred             CCE--ECCCCCCcCC-CC-ceEEECCEEecCHHHhh
Confidence            445  6888999997 33 46667779999999953

>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}

Probab=89.17  E-value=0.1  Score=33.73  Aligned_cols=30  Identities=37%  Similarity=0.925  Sum_probs=24.5

Q ss_pred             hhccccccCCCCCCCceEEEcCCccccChhhHHH
Q 032100           68 LKSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDR  101 (147)
Q Consensus        68 L~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~  101 (147)
                      +..|-.|.+.|.+..    .+..+-|||..||..
T Consensus        18 ~~~C~~CG~~i~~~~----~~r~krFCS~sCR~~   47 (49)
T 2l8e_A           18 LLKCEYCGKYAPAEQ----FRGSKRFCSMTCAKR   47 (49)
T ss_dssp             EEECTTTCCEEEGGG----CTTTSSSCSHHHHHH
T ss_pred             CCcChhccCcccccc----CCCCCccCCHHHHhh
Confidence            457999999998544    377889999999975

>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9

Probab=81.07  E-value=0.63  Score=32.02  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             hccccccCCCCCCCceEEEcCCccccChhhHHH
Q 032100           69 KSCYLCNKNLSLDKEVYMYRGDQGFCSIECRDR  101 (147)
Q Consensus        69 ~~C~lCkK~L~~~kDIyMYRGe~AFCS~ECR~~  101 (147)
                      ..|--|+|+..-.++    --..+|||+.|+.-
T Consensus        10 ~~CP~Cgkp~~W~~~----~~~rPFCSeRCr~i   38 (68)
T 1lv3_A           10 VNCPTCGKTVVWGEI----SPFRPFCSKRCQLI   38 (68)
T ss_dssp             EECTTTCCEEECSSS----SSCCSSSSHHHHHH
T ss_pred             CcCCCCCCccccccc----CCCCcccCHHHHhh
Confidence            579999999862222    23579999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	90.09
d2dasa1	49	Zinc finger MYM-type protein 5 {Human (Homo sapien	88.3
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	87.65

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.077  Score=30.76  Aligned_cols=23  Identities=22%  Similarity=0.664  Sum_probs=20.9

Q ss_pred             cccccCCCCCCCceEEEcCCccccC
Q 032100           71 CYLCNKNLSLDKEVYMYRGDQGFCS   95 (147)
Q Consensus        71 C~lCkK~L~~~kDIyMYRGe~AFCS   95 (147)
                      |..|+++|.  .+-|.-|+|+++|-
T Consensus         2 Ct~Ck~~La--GqrFTSrde~pYC~   24 (32)
T d2cuqa1           2 CTGCQTPLA--GQQFTSRDEDPYCV   24 (32)
T ss_dssp             CSSSCCBCT--TCCEEECSSSEEEH
T ss_pred             ccccCcccc--CCccccCCCCccHH
Confidence            889999999  67899999999994

>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: TRASH domain
domain: Zinc finger MYM-type protein 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.30  E-value=0.14  Score=32.03  Aligned_cols=33  Identities=30%  Similarity=0.640  Sum_probs=28.3

Q ss_pred             hhccccccCCCCCCCceEEEcCC-ccccChhhHH
Q 032100           68 LKSCYLCNKNLSLDKEVYMYRGD-QGFCSIECRD  100 (147)
Q Consensus        68 L~~C~lCkK~L~~~kDIyMYRGe-~AFCS~ECR~  100 (147)
                      --+|..|+|.|-.|.-.|-=.|- .-|||.-|=.
T Consensus        13 ~v~Ca~Ckk~lqKGQTAyqrkGs~~LFCSt~Cl~   46 (49)
T d2dasa1          13 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   46 (49)
T ss_dssp             SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             EeEecccchHHhccchHHhhCCCcceeEcchhhc
Confidence            46899999999999999988884 5699999854

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=0.13  Score=29.75  Aligned_cols=24  Identities=33%  Similarity=0.724  Sum_probs=21.2

Q ss_pred             ccccccCCCCCCCceEEEcCCccccC
Q 032100           70 SCYLCNKNLSLDKEVYMYRGDQGFCS   95 (147)
Q Consensus        70 ~C~lCkK~L~~~kDIyMYRGe~AFCS   95 (147)
                      .|..|++.|.  ..-|+-|.+++||-
T Consensus         1 ~C~~C~~~L~--GQry~~rd~~PyC~   24 (32)
T d2d8za2           1 VCTACRKQLS--GQRFTARDDFAYCL   24 (32)
T ss_dssp             BCSSSCCBCT--TSCCEESSSSEECH
T ss_pred             CcccCCcccc--CceeeecCCCeehH
Confidence            3899999998  67899999999994