Citrus Sinensis ID: 032116

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MADITRTLKPISTFFFLFSFHSAHFLRHSLLSDLGSPRFGNKPLCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEcccHHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEccccccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHcccccccEEEEEcccccHHHHHHHHHcccccccccccccccccccccccccEEEEEccccHHHcccccccccccccccEEEEEcccccccEEEEEEccHHHHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEEEEEc
Coil and Loop (DISEMBL)
maditrtlkpisTFFFLFSFHSAHFLRHSllsdlgsprfgnkplccparrrfsssatriiprassatavedgsngdtdtiptpkviidldsdpdativeITFGDRLGALLDTMNALKNLGLNVVKANVFldssgkhnkFAITKAYVL
Flexible Loop (DISEMBL)
MADITRTLKPISTFFFLFSFHSAHFLRHSLLSDLGSPRFGNKPLCCPARrrfsssatriiprassatavedgsngdtdtiptpkviidldsdpdATIVEITFGDRLGALLDTMNALKNLGLNVVKANvfldssgkhnkfaitkayvl
Low Complexity Region (SEG)
MADITRTLKPISTffflfsfhsahflrhsllsDLGSPRFGNKPLCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL
Disordered region (IsUnstruct)
******TLKPISTFFFLFSFHSAHFLRHSLLSDLGSPRFGNKPLCCPA***********************************KVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA***
Disordered Region (DISOPRED)
*****RTLKPISTFFFLFSFHSAHFLR***********FGN**************************************IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL
Disordered Region (DISEMBL)
MADITRTLKPISTFFFLFSFHSAHFLRHSLLSDLGSPRFGNKPLCCPARRRFSSSATRIIPR*************DTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL
Disordered Region (DISPRO)
***ITRTLKPISTFFFLFSFHSAHFLRHSLLSDLGSPRFGNKPLCCPARRRFSSSATRIIPRASS************DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADITRTLKPISTFFFLFSFHSAHFLRHSLLSDLGSPRFGNKPLCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAYVL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q0J709	283	Unknown protein DS12 from	yes	no	0.625	0.325	0.784	5e-34
P83643	283	Unknown protein DS12 from	N/A	no	0.625	0.325	0.784	5e-34

>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 81/93 (87%), Gaps = 1/93 (1%)

Query: 51  RFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALL 110
           R SS A R+ PRA+S+ AVEDGS+ +TDT+PTPKVIID DSDPDATIVEIT GDRLG LL
Sbjct: 46  RLSSPAVRV-PRAASSAAVEDGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLL 104

Query: 111 DTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 143
           DTMNALKNLGLNVVKA+V LDS+GKH K AITK
Sbjct: 105 DTMNALKNLGLNVVKASVCLDSTGKHIKLAITK 137

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/93 (78%), Positives = 81/93 (87%), Gaps = 1/93 (1%)

Query: 51  RFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALL 110
           R SS A R+ PRA+S+ AVEDGS+ +TDT+PTPKVIID DSDPDATIVEIT GDRLG LL
Sbjct: 46  RLSSPAVRV-PRAASSAAVEDGSSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLL 104

Query: 111 DTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 143
           DTMNALKNLGLNVVKA+V LDS+GKH K AITK
Sbjct: 105 DTMNALKNLGLNVVKASVCLDSTGKHIKLAITK 137

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
449439743	292	PREDICTED: unknown protein DS12 from 2D-	0.639	0.321	0.882	2e-39
449533134	224	PREDICTED: unknown protein DS12 from 2D-	0.639	0.419	0.882	3e-39
224097482	203	predicted protein [Populus trichocarpa]	0.693	0.502	0.813	3e-39
224110036	279	predicted protein [Populus trichocarpa]	0.727	0.383	0.711	4e-39
358249276	294	uncharacterized protein LOC100803191 [Gl	0.700	0.350	0.796	1e-38
356523245	291	PREDICTED: unknown protein DS12 from 2D-	0.700	0.353	0.786	3e-38
147800453	453	hypothetical protein VITISV_038929 [Viti	0.693	0.225	0.783	8e-38
255636370	148	unknown [Glycine max]	0.693	0.689	0.784	1e-37
359483143	291	PREDICTED: unknown protein DS12 from 2D-	0.693	0.350	0.783	5e-37
255564051	282	amino acid binding protein, putative [Ri	0.687	0.358	0.772	4e-36

>gi|449439743|ref|XP_004137645.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 88/94 (93%)

Query: 51  RFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALL 110
           R+SSS  + IPRASSATAVEDGSNGDTDTIPTP VIID DSD DAT+VEITFGDRLGALL
Sbjct: 54  RWSSSNMKSIPRASSATAVEDGSNGDTDTIPTPIVIIDQDSDQDATVVEITFGDRLGALL 113

Query: 111 DTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           DTMNALKNLGLNVVKANVFLDSSGKHN+F+ITKA
Sbjct: 114 DTMNALKNLGLNVVKANVFLDSSGKHNRFSITKA 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533134|ref|XP_004173532.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like, partial [Cucumis sativus]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 88/94 (93%)

Query: 51  RFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALL 110
           R+SSS  + IPRASSATAVEDGSNGDTDTIPTP VIID DSD DAT+VEITFGDRLGALL
Sbjct: 54  RWSSSNMKSIPRASSATAVEDGSNGDTDTIPTPIVIIDQDSDQDATVVEITFGDRLGALL 113

Query: 111 DTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           DTMNALKNLGLNVVKANVFLDSSGKHN+F+ITKA
Sbjct: 114 DTMNALKNLGLNVVKANVFLDSSGKHNRFSITKA 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097482|ref|XP_002310954.1| predicted protein [Populus trichocarpa] gi|222850774|gb|EEE88321.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 87/102 (85%)

Query: 43  PLCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITF 102
           P  C  RRR SSS T II +ASSA  VEDGS  +TD IPTPKVIID DSDPDAT+VEITF
Sbjct: 34  PFLCKERRRLSSSRTIIIVQASSAPTVEDGSQNETDAIPTPKVIIDQDSDPDATVVEITF 93

Query: 103 GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHN FAITK+
Sbjct: 94  GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNTFAITKS 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110036|ref|XP_002315393.1| predicted protein [Populus trichocarpa] gi|222864433|gb|EEF01564.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 90/118 (76%), Gaps = 11/118 (9%)

Query: 38  RFGNKPLC-----------CPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVI 86
           + G  PLC           C  RRR  SS T IIP ASSA  +EDGS  DTD IPTPKVI
Sbjct: 18  KVGENPLCFGLAPTQLPYLCKERRRLPSSRTIIIPGASSAPTIEDGSQNDTDAIPTPKVI 77

Query: 87  IDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           ID D+DPDAT+VE+TFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHN F+ITKA
Sbjct: 78  IDQDADPDATVVEVTFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNTFSITKA 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249276|ref|NP_001240278.1| uncharacterized protein LOC100803191 [Glycine max] gi|255644481|gb|ACU22744.1| unknown [Glycine max]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 88/103 (85%)

Query: 42  KPLCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEIT 101
           KP C     R S S T IIPRA+  T VEDG++G+TDTIPTP VIID DSDPDAT+VEIT
Sbjct: 47  KPFCILNTTRLSYSGTTIIPRAAPVTDVEDGNHGETDTIPTPVVIIDQDSDPDATVVEIT 106

Query: 102 FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF+ITKA
Sbjct: 107 FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFSITKA 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523245|ref|XP_003530251.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 87/103 (84%)

Query: 42  KPLCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEIT 101
           KP C     R S S T IIPRA+  T V+DG+ G+TDTIPTP VIID DSDPDAT+VEIT
Sbjct: 44  KPFCILNTTRLSYSGTTIIPRAAPVTDVKDGNQGETDTIPTPVVIIDQDSDPDATVVEIT 103

Query: 102 FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF+ITKA
Sbjct: 104 FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFSITKA 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800453|emb|CAN70848.1| hypothetical protein VITISV_038929 [Vitis vinifera]

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 83/106 (78%), Positives = 89/106 (83%), Gaps = 4/106 (3%)

Query: 43  PLCCPARRRFSSSATRIIPRASSATAVEDG----SNGDTDTIPTPKVIIDLDSDPDATIV 98
           P C P + R SSS + I PRASSATA++DG    +  DTD IPTPKVIID DSDP+ATIV
Sbjct: 41  PPCVPLKGRLSSSVSTITPRASSATALKDGKPDGNYDDTDAIPTPKVIIDQDSDPNATIV 100

Query: 99  EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHN FAITKA
Sbjct: 101 EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNTFAITKA 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636370|gb|ACU18524.1| unknown [Glycine max]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 86/102 (84%)

Query: 42  KPLCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEIT 101
           KP C     R S S T IIPRA+  T V+DG+ G+TDTIPTP VIID DSDPDAT+VEIT
Sbjct: 44  KPFCILNTTRLSYSGTTIIPRAAPVTDVKDGNQGETDTIPTPVVIIDQDSDPDATVVEIT 103

Query: 102 FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK 143
           FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF+ITK
Sbjct: 104 FGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFSITK 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483143|ref|XP_003632910.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Vitis vinifera] gi|298204773|emb|CBI25271.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 83/106 (78%), Positives = 89/106 (83%), Gaps = 4/106 (3%)

Query: 43  PLCCPARRRFSSSATRIIPRASSATAVEDG----SNGDTDTIPTPKVIIDLDSDPDATIV 98
           P C P + R SSS + I PRASSATA++DG    +  DTD IPTPKVIID DSDP+ATIV
Sbjct: 41  PPCVPLKGRLSSSVSTITPRASSATALKDGKPDGNYDDTDAIPTPKVIIDQDSDPNATIV 100

Query: 99  EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHN FAITKA
Sbjct: 101 EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNTFAITKA 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564051|ref|XP_002523024.1| amino acid binding protein, putative [Ricinus communis] gi|223537746|gb|EEF39366.1| amino acid binding protein, putative [Ricinus communis]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 86/101 (85%)

Query: 44  LCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFG 103
           LC        S  T IIP+ASSATAVEDGS+ +TD++PTPKVIID DSDPDAT+VEITFG
Sbjct: 37  LCKQTAGTTGSRRTIIIPQASSATAVEDGSHNETDSVPTPKVIIDQDSDPDATVVEITFG 96

Query: 104 DRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
           DRLGALLDTMNAL+NLGLNV KANVFLDSSGKHN F+ITKA
Sbjct: 97  DRLGALLDTMNALRNLGLNVTKANVFLDSSGKHNTFSITKA 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.693	0.351	0.7	4.7e-32
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.544	0.265	0.55	2.8e-18
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.442	0.136	0.307	0.00031

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 77/110 (70%), Positives = 89/110 (80%)

Query:    39 FGNKPLCCPARRRFSSSATRIIPRASSATAVE----DGSNGDTDTIPTPKVIIDLDSDPD 94
             F +KPL    R R S+   +I  RAS+ATAVE    +GS  D+D +PTP VIID DSDPD
Sbjct:    40 FVDKPLVNLERLRLST--LKI--RASNATAVENGKQEGSAADSDKVPTPVVIIDQDSDPD 95

Query:    95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA 144
             AT++E+TFGDRLGALLDTMNALKNLGLNVVKANV+LDSSGKHNKFAIT+A
Sbjct:    96 ATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRA 145

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 44/80 (55%), Positives = 59/80 (73%)

Query:    64 SSATAVEDGSNGDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNV 123
             S+AT     S  D D +P P V+ID D+DP+ATIV+++FG+RLGAL+DTM ALK+LGL+V
Sbjct:    76 SAATPSYPKSEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDV 135

Query:   124 VKANVFLDSSGKHNKFAITK 143
             +K  V  + S K  KF+ITK
Sbjct:   136 IKGTVSTEGSIKQTKFSITK 155

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query:    78 DTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHN 137
             + I  P+V +D DSDP+ T++++   ++ G LLD +  L +L L + K  +  D     +
Sbjct:    19 ERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDGEWFMD 78

Query:   138 KFAIT 142
              F +T
Sbjct:    79 VFHVT 83


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      147       128   0.00091  102 3  11 22  0.40    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  496 (53 KB)
  Total size of DFA:  98 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.89u 0.21s 13.10t   Elapsed:  00:00:00
  Total cpu time:  12.89u 0.21s 13.10t   Elapsed:  00:00:00
  Start:  Fri May 10 16:29:46 2013   End:  Fri May 10 16:29:46 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0J709	UP12_ORYSJ	No assigned EC number	0.7849	0.6258	0.3250	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080078 hypothetical protein (203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	0.001
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.002

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 25/103 (24%)

Query: 26  LRHSLLSDLGSPRFGNKPLCCPARRRFSSSATRIIPRASSATAVEDGSNGDTDTIPTPKV 85
           LR  L+  L S +        P RRR        IPR      +             P+V
Sbjct: 747 LRGELIEALLSGKAQ------PPRRR-------RIPRKLRHFPIP------------PRV 781

Query: 86  IIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 128
            I   +  D T++E+   DR G L        +LGL++  A +
Sbjct: 782 TILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI 824

Length = 867

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 12/100 (12%)

Query: 36  SPRFGNKPLCCPARRRFSSS-------ATRIIPRASSATAVEDGSNGDTDTIPTPKVIID 88
           SPRFG+ P     R+    +         R+  R ++A AV             P+V+  
Sbjct: 646 SPRFGSPPDAALLRQDLRRALDGDLDVLARLAAREAAAAAVPVRR-----PAAPPRVLWL 700

Query: 89  LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANV 128
             + PDAT++E+   DR G L     AL+  G++V  A V
Sbjct: 701 DGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740

Length = 774

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.82
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.75
PRK05007	884	PII uridylyl-transferase; Provisional	99.67
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.67
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.65
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.5
PRK04374	869	PII uridylyl-transferase; Provisional	99.43
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.43
PRK05092	931	PII uridylyl-transferase; Provisional	99.41
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.41
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.39
PRK03381	774	PII uridylyl-transferase; Provisional	99.38
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.38
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.33
PRK03059	856	PII uridylyl-transferase; Provisional	99.32
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.19
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.18
PRK05007	884	PII uridylyl-transferase; Provisional	99.11
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.09
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.08
PRK05092	931	PII uridylyl-transferase; Provisional	98.72
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.66
PRK00275	895	glnD PII uridylyl-transferase; Provisional	98.64
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	98.59
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.52
PRK03381	774	PII uridylyl-transferase; Provisional	98.51
PRK03059	856	PII uridylyl-transferase; Provisional	98.19
PRK04374	869	PII uridylyl-transferase; Provisional	98.03
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.8
PRK00227	693	glnD PII uridylyl-transferase; Provisional	97.66
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.61
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.49
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.39
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.34
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.32
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	97.26
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.15
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.03
cd02116	60	ACT ACT domains are commonly involved in specifica	96.95
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.94
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.92
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.88
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.86
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	96.84
PRK00194	90	hypothetical protein; Validated	96.7
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	96.51
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.5
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.49
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.49
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.48
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.41
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.33
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.1
PRK11589	190	gcvR glycine cleavage system transcriptional repre	95.82
PRK11589	190	gcvR glycine cleavage system transcriptional repre	95.7
PRK08577	136	hypothetical protein; Provisional	95.65
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	95.51
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.41
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.27
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	95.21
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	94.63
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	94.54
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	94.5
COG3830	90	ACT domain-containing protein [Signal transduction	94.36
PRK07334	403	threonine dehydratase; Provisional	93.66
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	93.33
PRK04435	147	hypothetical protein; Provisional	93.25
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	93.21
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	93.12
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	93.09
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.79
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	92.6
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	92.56
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	92.19
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	92.17
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	92.0
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	91.58
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	91.29
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	91.08
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	90.56
PRK00227	693	glnD PII uridylyl-transferase; Provisional	89.88
PRK08818	370	prephenate dehydrogenase; Provisional	89.61
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	88.91
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	88.69
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	88.55
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	87.88
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	87.35
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	87.05
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	86.18
PRK11899	279	prephenate dehydratase; Provisional	85.86
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	85.73
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	85.63
COG4747	142	ACT domain-containing protein [General function pr	84.82
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	83.76
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	82.64
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	82.07
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	81.21
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	81.09
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	80.79
COG4747	142	ACT domain-containing protein [General function pr	80.39
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	80.28
PRK06382	406	threonine dehydratase; Provisional	80.22

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=4.8e-20  Score=128.81  Aligned_cols=51  Identities=25%  Similarity=0.383  Sum_probs=49.7

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      +||+||.+.||||||++|+++|+++||+|++|+|+|.|+|++|+|||+|.+
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~   51 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL   51 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC
Confidence            699999999999999999999999999999999999999999999999875

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=2.8e-18  Score=120.92  Aligned_cols=51  Identities=22%  Similarity=0.338  Sum_probs=49.7

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      +|||||.+.||||||++|+++|.++||+|..|+|+|.|+++.|+|||+|.+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~   51 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD   51 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC
Confidence            699999999999999999999999999999999999999999999999875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.67  E-value=1.3e-16  Score=149.63  Aligned_cols=65  Identities=15%  Similarity=0.140  Sum_probs=62.6

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      .+|+|.|||+.|+++|++||.+.||+|||++|+++|.++||+|+.|+|+|.|+++.|+|||+|.+
T Consensus       794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~  858 (884)
T PRK05007        794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD  858 (884)
T ss_pred             CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC
Confidence            45699999999999999999999999999999999999999999999999999999999999864

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.67  E-value=1.3e-16  Score=149.26  Aligned_cols=65  Identities=20%  Similarity=0.224  Sum_probs=62.6

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      .+|+|.|||+.|+++|++||.+.||||||++|+++|.++|++|+.|+|+|.|+++.|+|||+|.+
T Consensus       769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~  833 (854)
T PRK01759        769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ  833 (854)
T ss_pred             CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC
Confidence            45699999999999999999999999999999999999999999999999999999999999865

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.65  E-value=4.2e-16  Score=109.85  Aligned_cols=46  Identities=17%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE--eCCCcceEEEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF--LDSSGKHNKFAI  141 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS--TdGd~~~DVFyV  141 (147)
                      ||+||.+.||+|||++++++|+++||+|+.|+|+  |.|+++.|+|||
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv   48 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV   48 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE
Confidence            7999999999999999999999999999999999  999999999999

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.50  E-value=7e-14  Score=129.84  Aligned_cols=65  Identities=28%  Similarity=0.354  Sum_probs=62.7

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      .+|+|.|||+.++++|+|+|.+.||||||++|+++|.++|++|+.|+|+|.|+++.|+|||++..
T Consensus       765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~  829 (850)
T TIGR01693       765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF  829 (850)
T ss_pred             CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC
Confidence            56799999999999999999999999999999999999999999999999999999999999864

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.43  E-value=4e-13  Score=126.81  Aligned_cols=65  Identities=23%  Similarity=0.252  Sum_probs=62.3

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      -+|+|.|||+.++++|+++|.+.||+|||++|+++|.++||+|..|+|+|.|+++.|+|||+|.+
T Consensus       782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~  846 (869)
T PRK04374        782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH  846 (869)
T ss_pred             CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence            34599999999999999999999999999999999999999999999999999999999999865

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.43  E-value=4.1e-13  Score=126.69  Aligned_cols=65  Identities=25%  Similarity=0.238  Sum_probs=62.5

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      .+|+|.|+|+.+.++|+|+|.+.||+|||++|+++|.++||+|..|+|+|.|++++|+|||+|.+
T Consensus       800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~  864 (895)
T PRK00275        800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD  864 (895)
T ss_pred             CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC
Confidence            45799999999999999999999999999999999999999999999999999999999999865

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.41  E-value=6.9e-13  Score=124.84  Aligned_cols=65  Identities=29%  Similarity=0.433  Sum_probs=62.3

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      .+|+|.|||+.+.++|+|+|.+.||+|||++|+++|.++|++|..|+|+|.|+++.|+|||+|.+
T Consensus       829 ~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~  893 (931)
T PRK05092        829 VPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF  893 (931)
T ss_pred             CCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC
Confidence            35799999999999999999999999999999999999999999999999999999999999854

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.41  E-value=7.6e-13  Score=89.91  Aligned_cols=50  Identities=26%  Similarity=0.292  Sum_probs=48.3

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      ||+||.+.||+|||.+++++|.++||||..|+|.|-|+.++|+|||+|.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~   50 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEE   50 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCc
Confidence            79999999999999999999999999999999999999999999999864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.39  E-value=1.6e-12  Score=89.25  Aligned_cols=49  Identities=27%  Similarity=0.331  Sum_probs=46.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY  145 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d  145 (147)
                      ++||.+.||+|||++++++|.++||+|..|+|+| .++++.|+|||+|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~   51 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR   51 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC
Confidence            6899999999999999999999999999999996 999999999999865

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.38  E-value=1.3e-12  Score=121.57  Aligned_cols=65  Identities=31%  Similarity=0.363  Sum_probs=62.4

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      .+|+|.+||+.++++|+|+|.+.||+|||++|+++|.++|+||..|+|+|.|++++|+|||+|.+
T Consensus       693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~  757 (774)
T PRK03381        693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA  757 (774)
T ss_pred             CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence            45699999999999999999999999999999999999999999999999999999999999875

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.38  E-value=1.9e-12  Score=86.92  Aligned_cols=51  Identities=29%  Similarity=0.373  Sum_probs=47.2

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEEeccc
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITKAY  145 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd-Gd~~~DVFyVTD~d  145 (147)
                      ++-|+|.+.||+|||++++.+|..+||+|..|+|.|- +++++|+|||+|.+
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~   52 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD   52 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC
Confidence            4678999999999999999999999999999999887 58999999999764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2.5e-12  Score=122.33  Aligned_cols=63  Identities=27%  Similarity=0.344  Sum_probs=61.7

Q ss_pred             CEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           83 PKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        83 PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      |+|.|.|+.+...|++||.+.||+|||.+++++|.|+||+|+.|+|+|.|+++.|+|||||..
T Consensus       779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~  841 (867)
T COG2844         779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD  841 (867)
T ss_pred             CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc
Confidence            799999999999999999999999999999999999999999999999999999999999875

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.32  E-value=5.5e-12  Score=118.65  Aligned_cols=64  Identities=22%  Similarity=0.251  Sum_probs=60.8

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA  144 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~  144 (147)
                      .+|+|.|+|+.++++|+|+|.+.||+|||++|+++|..+||+|+.|+|+|.|+++.|+|||++.
T Consensus       772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~  835 (856)
T PRK03059        772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS  835 (856)
T ss_pred             CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC
Confidence            3569999999999999999999999999999999999999999999999999999999999754

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.19  E-value=7.8e-11  Score=109.72  Aligned_cols=65  Identities=25%  Similarity=0.246  Sum_probs=61.9

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyVTD~d  145 (147)
                      +.|.|.++|..+..+|.|+|.+.||+|||.+|+.+|..+||+|..|+|. |.|++++|+|||+|.+
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~  719 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF  719 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence            4689999999999999999999999999999999999999999999999 8999999999999875

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.18  E-value=8.2e-11  Score=110.66  Aligned_cols=65  Identities=15%  Similarity=0.128  Sum_probs=62.1

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d  145 (147)
                      ..|.|.|+|+.+..+|.|.|.+.||+|||+.|+.+|..+||+|..|+|.| .+++++|+|||+|.+
T Consensus       663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~  728 (854)
T PRK01759        663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELN  728 (854)
T ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCC
Confidence            46789999999999999999999999999999999999999999999988 899999999999875

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.11  E-value=2.7e-10  Score=107.52  Aligned_cols=65  Identities=18%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyVTD~d  145 (147)
                      +.|.|.|+|+.+..+|.|+|.+.||+|||..|+.+|..+||+|..|+|.|-++ +++|+|||+|.+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~  752 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD  752 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC
Confidence            57899999999999999999999999999999999999999999999998777 899999999875

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.09  E-value=5.2e-10  Score=75.48  Aligned_cols=50  Identities=28%  Similarity=0.385  Sum_probs=47.0

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      |-+.|...||+|+|++++++|.++|+||..|.|.+.++.++|+|||+|.+
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~   51 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN   51 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC
Confidence            56889999999999999999999999999999999988999999999865

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.08  E-value=7.2e-10  Score=71.74  Aligned_cols=50  Identities=34%  Similarity=0.420  Sum_probs=47.8

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      |+++|...||+|+|.+++++|.++|++|..+.+.+.++++.|.|||.+.+
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~   50 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD   50 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC
Confidence            78999999999999999999999999999999999999999999998765

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=98.72  E-value=5.6e-08  Score=92.12  Aligned_cols=65  Identities=22%  Similarity=0.261  Sum_probs=60.5

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d  145 (147)
                      .++.|.|.++.+..+|.|.|.+.||+|||.+|+.+|..+||||..|+|.| .++.++|+|||+|.+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~  783 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF  783 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC
Confidence            46789999999999999999999999999999999999999999999988 777899999998764

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.66  E-value=1.6e-07  Score=59.77  Aligned_cols=50  Identities=32%  Similarity=0.425  Sum_probs=46.4

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      |.+.|...||+|+|.+++++|++.|++|..+++.+.+++..+.|+|.+.+
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~   50 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD   50 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence            46889999999999999999999999999999999888999999998754

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=98.64  E-value=1.3e-07  Score=89.91  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=57.1

Q ss_pred             CCEEEEcCCCC---CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032116           82 TPKVIIDLDSD---PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY  145 (147)
Q Consensus        82 ~PrV~IDNdss---~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyVTD~d  145 (147)
                      .|.|.+.+...   ..+|.|.|.+.||+||+.+|+.+|..+||||..|+|. +..++++|+|+|+|.+
T Consensus       688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~  755 (895)
T PRK00275        688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD  755 (895)
T ss_pred             CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence            46677888776   6899999999999999999999999999999999995 5667889999999865

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=98.59  E-value=2.3e-07  Score=64.60  Aligned_cols=48  Identities=27%  Similarity=0.369  Sum_probs=43.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY  145 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d  145 (147)
                      |-|...||+|++..++.+|..+||||..|+|.| ..++.+|+|+|+|.+
T Consensus         4 I~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~   52 (68)
T cd04928           4 ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK   52 (68)
T ss_pred             EEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC
Confidence            568889999999999999999999999999996 466789999999875

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.52  E-value=5.5e-07  Score=56.70  Aligned_cols=49  Identities=22%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC--cceEEEEEecc
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFAITKA  144 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd--~~~DVFyVTD~  144 (147)
                      |.|.|...||+|+|.++.++|.++|+||..+++.++++  +.+..+.+.+.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~   51 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE   51 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC
Confidence            57889999999999999999999999999999999988  66666666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PRK03381 PII uridylyl-transferase; Provisional

Probab=98.51  E-value=5.1e-07  Score=84.57  Aligned_cols=64  Identities=22%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      ..|.|.+.++. ...|.|.|...||+||+..|+.+|..+|+||..|.|.|.++++.|+|+|++.+
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~  649 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF  649 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC
Confidence            67899999888 99999999999999999999999999999999999999888999999999854

>PRK03059 PII uridylyl-transferase; Provisional

Probab=98.19  E-value=6.7e-06  Score=78.08  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=58.6

Q ss_pred             CCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEEeccc
Q 032116           81 PTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAITKAY  145 (147)
Q Consensus        81 ~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyVTD~d  145 (147)
                      +.|.|.+.+.....+|-|-|.+.||+||+..++.+|..+||||..|.|. +..+.++|+|+|+|.+
T Consensus       664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~  729 (856)
T PRK03059        664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE  729 (856)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence            3567779898899999999999999999999999999999999999995 4677889999999764

>PRK04374 PII uridylyl-transferase; Provisional

Probab=98.03  E-value=2.5e-05  Score=74.60  Aligned_cols=64  Identities=20%  Similarity=0.166  Sum_probs=55.9

Q ss_pred             CCEEEE-cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEEeccc
Q 032116           82 TPKVII-DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAITKAY  145 (147)
Q Consensus        82 ~PrV~I-DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyVTD~d  145 (147)
                      .|.|.+ +......+|-|-|.+.||+||+..|+.+|..+||||..|+|.| ..+.++|+|+|+|.+
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~  741 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD  741 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence            344554 4466778999999999999999999999999999999999997 677899999999865

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.80  E-value=3.7e-05  Score=54.77  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEecc
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKA  144 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~  144 (147)
                      |+|.|.-.||.||=-|+.+++-+.||+|.|+.++|||.|-.=+|.|.-.
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~   49 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR   49 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC
Confidence            6899999999999999999999999999999999999999999999754

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=97.66  E-value=4e-05  Score=72.14  Aligned_cols=54  Identities=17%  Similarity=0.105  Sum_probs=49.8

Q ss_pred             cCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEec
Q 032116           80 IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK  143 (147)
Q Consensus        80 ~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD  143 (147)
                      ..+|+|....      +|+||.+.||+|+|+.++++|-    .|..|+|+|-|...+|+||++.
T Consensus       622 ~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~  675 (693)
T PRK00227        622 PGITATFWHG------NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP  675 (693)
T ss_pred             CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC
Confidence            5677888775      8999999999999999999999    8999999999999999999974

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.61  E-value=0.00027  Score=48.03  Aligned_cols=46  Identities=13%  Similarity=0.148  Sum_probs=39.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT  142 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVT  142 (147)
                      ||.|...||||++.+++++|.+.|+||......+-|+++.=.+-|.
T Consensus         4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~   49 (76)
T PF13740_consen    4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVS   49 (76)
T ss_dssp             EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEE
Confidence            7899999999999999999999999999999999999987776653

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.49  E-value=0.0003  Score=47.29  Aligned_cols=45  Identities=13%  Similarity=0.138  Sum_probs=38.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI  141 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV  141 (147)
                      +|.|...||||++.+++++|.+.|+||....-.+.++.+.=.|.|
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v   45 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILV   45 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEE
Confidence            578999999999999999999999999999877777766555555

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.39  E-value=0.00081  Score=45.10  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      -+-++|...||+|+|.+|++++.+.|.+|....+....
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~   43 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNK   43 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEec
Confidence            35689999999999999999999999999999999954

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.34  E-value=0.00074  Score=44.94  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=32.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      |+.|...||+|++.++++.|.+.|+||....-.++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~   35 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD   35 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence            58899999999999999999999999999877763

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.32  E-value=0.00055  Score=45.82  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=32.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      ++|.+.||.|+|.+|++++++.|.+|....+.++
T Consensus         3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            6899999999999999999999999999999886

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.26  E-value=0.00086  Score=45.76  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=36.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK  135 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~  135 (147)
                      |+.|...||+|+...+++.|.+.|+||........+++|
T Consensus         3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F   41 (77)
T cd04893           3 VISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF   41 (77)
T ss_pred             EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence            688999999999999999999999999999999988876

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.15  E-value=0.0015  Score=43.36  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      ++.|...||+|++.++++.|.+.|+||......+++
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~   36 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS   36 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence            478999999999999999999999999999998887

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.03  E-value=0.0038  Score=40.66  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=32.0

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      ++|...||+|+|.++++++.+.|.||...+.....
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~   36 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG   36 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec
Confidence            68999999999999999999999999998887753

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.95  E-value=0.0063  Score=33.98  Aligned_cols=46  Identities=20%  Similarity=0.372  Sum_probs=36.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC-CcceEEEEEec
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK  143 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG-d~~~DVFyVTD  143 (147)
                      +.|...|++|+|.++.++|.+.|++|.+....... .+....++.++
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD   47 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence            46788899999999999999999999999987754 34455554443

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.94  E-value=0.0046  Score=38.57  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      +.|...||+|+|.+++++|.+.|.+|..-.....
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3577889999999999999999999997776654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.92  E-value=0.0059  Score=38.62  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=35.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEEe
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAIT  142 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyVT  142 (147)
                      +.|...||+|+|.+++++|.+.|.+|.+.......+ .......++
T Consensus         3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~   48 (79)
T cd04881           3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT   48 (79)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence            678999999999999999999999999998766533 333343434

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.88  E-value=0.005  Score=38.07  Aligned_cols=44  Identities=16%  Similarity=0.099  Sum_probs=36.1

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC--CcceEEEEE
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAI  141 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG--d~~~DVFyV  141 (147)
                      +.|...|++|+|.+++++|.+.|++|....+...+  +...=.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            56889999999999999999999999999998875  333334444

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.86  E-value=0.0084  Score=37.28  Aligned_cols=46  Identities=13%  Similarity=0.156  Sum_probs=37.1

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEEec
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAITK  143 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd-Gd~~~DVFyVTD  143 (147)
                      +.|...|++|+|.++++.|.+.|.+|.+...... ++......+.++
T Consensus         3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   49 (72)
T cd04878           3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE   49 (72)
T ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence            6788999999999999999999999999998876 444444444443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=96.84  E-value=0.0026  Score=43.80  Aligned_cols=42  Identities=14%  Similarity=0.196  Sum_probs=36.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEE
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNK  138 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DV  138 (147)
                      ++.+...||+|++.++++.|.+.|+||....-.+.++.+.=.
T Consensus         3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~   44 (88)
T cd04872           3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMI   44 (88)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEE
Confidence            789999999999999999999999999999888876654333

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=96.70  E-value=0.0037  Score=42.88  Aligned_cols=40  Identities=15%  Similarity=0.247  Sum_probs=35.1

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK  135 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~  135 (147)
                      -++.|...||+|++.++++.|.+.|+||.-..-.+.++.+
T Consensus         4 ~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~   43 (90)
T PRK00194          4 AIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYF   43 (90)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCee
Confidence            4889999999999999999999999999987777766544

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.0084  Score=58.57  Aligned_cols=66  Identities=24%  Similarity=0.343  Sum_probs=60.1

Q ss_pred             cCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc-ceEEEEEeccc
Q 032116           80 IPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG-KHNKFAITKAY  145 (147)
Q Consensus        80 ~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~-~~DVFyVTD~d  145 (147)
                      -..|-|.+-+......|=|-|.+.|+|.|+..++.++...|+||+.|.|.|--+. .+|+|+|+|.+
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~  735 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD  735 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC
Confidence            3567788888888899999999999999999999999999999999999997776 89999999765

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.50  E-value=0.014  Score=36.54  Aligned_cols=46  Identities=11%  Similarity=0.196  Sum_probs=38.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC-CcceEEEEEec
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS-SGKHNKFAITK  143 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG-d~~~DVFyVTD  143 (147)
                      ++|.-.||+|.|.++.++|.+.|.||...++...+ +..+=.|-+-+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46788999999999999999999999999988755 66666666544

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.49  E-value=0.021  Score=35.70  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS  133 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd  133 (147)
                      .+.|...|++|.|.++.+.|.+.|++|.+.....+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~   38 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIERE   38 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCC
Confidence            4678899999999999999999999999988877643

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.49  E-value=0.018  Score=34.06  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS  133 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd  133 (147)
                      +.|...|++|.|.++.+.|.+.|++|.+..+...++
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~   36 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDD   36 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCC
Confidence            467889999999999999999999999999887663

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.48  E-value=0.02  Score=35.60  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFL  130 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~IST  130 (147)
                      +.+...||+|.|.++.+.|.+.|.+|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            467889999999999999999999999888776

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.41  E-value=0.011  Score=38.65  Aligned_cols=38  Identities=16%  Similarity=0.214  Sum_probs=34.1

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG  134 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~  134 (147)
                      -+.|.-.|++|.|.+++++|.+-|+||...++...++.
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~   40 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF   40 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence            36788899999999999999999999999999887663

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.33  E-value=0.013  Score=36.67  Aligned_cols=36  Identities=19%  Similarity=0.460  Sum_probs=32.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      ++.|.-.||+|.|.++.++|.+.|.||...+....+
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            467888999999999999999999999988876654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.10  E-value=0.031  Score=36.24  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=30.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      ++|...||+|+|.+++++|++.|.+|..-..+++
T Consensus         3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~   36 (76)
T cd04888           3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP   36 (76)
T ss_pred             EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence            6789999999999999999999999998877554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=95.82  E-value=0.011  Score=47.67  Aligned_cols=48  Identities=10%  Similarity=0.077  Sum_probs=42.0

Q ss_pred             CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116           92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF  139 (147)
Q Consensus        92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF  139 (147)
                      ..+.-||.|...||+|+...++++|.+.|+||.-...+.-|+.|.=.+
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~   52 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIM   52 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEE
Confidence            357789999999999999999999999999999999888888764443

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=95.70  E-value=0.021  Score=46.15  Aligned_cols=45  Identities=7%  Similarity=0.074  Sum_probs=36.8

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC--cceEEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS--GKHNKFA  140 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd--~~~DVFy  140 (147)
                      =.|+|.+.||||++++++++|.+.|+||..=.-.+.+.  +--+.|.
T Consensus        96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~  142 (190)
T PRK11589         96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLH  142 (190)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEE
Confidence            37899999999999999999999999999877666664  4444454

>PRK08577 hypothetical protein; Provisional

Probab=95.65  E-value=0.13  Score=38.42  Aligned_cols=41  Identities=17%  Similarity=0.234  Sum_probs=35.8

Q ss_pred             CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      .....-+.|...||+|+|.+++++|.+.|.+|......+..
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            33477899999999999999999999999999988877754

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=95.51  E-value=0.067  Score=34.49  Aligned_cols=34  Identities=12%  Similarity=0.284  Sum_probs=30.6

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      +.|.-.||+|.|.++.+.|.+.|++|...+....
T Consensus         4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            5678889999999999999999999998887764

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.41  E-value=0.084  Score=34.71  Aligned_cols=34  Identities=12%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      +.|.-.||||.|.++++.|++.|.||..-.....
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            4677899999999999999999999988766654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.27  E-value=0.15  Score=34.40  Aligned_cols=46  Identities=24%  Similarity=0.296  Sum_probs=33.9

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAI  141 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyV  141 (147)
                      |.+.+.-.|++|.|.++.+.|++.|+||.+-...-.++ ...=.|||
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~v   48 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFI   48 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEE
Confidence            34566778999999999999999999998776544432 22335666

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=95.21  E-value=0.054  Score=45.83  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=35.2

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe--CCC
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL--DSS  133 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST--dGd  133 (147)
                      .-+|.|...||+|+..+++++|.++|+||....-..  .++
T Consensus         6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g   46 (286)
T PRK06027          6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG   46 (286)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC
Confidence            457899999999999999999999999999998888  444

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=94.63  E-value=0.1  Score=33.29  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             EEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116           99 EITFGDRLGALLDTMNALKNLGLNVVKANVFL  130 (147)
Q Consensus        99 eV~s~DR~GLLldivqaL~dLgLnI~KA~IST  130 (147)
                      -|...|++|.|.++.+.|.+.|+||..-++..
T Consensus         3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~   34 (73)
T cd04902           3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGR   34 (73)
T ss_pred             EEEeCCCCCHHHHHHHHHHHcCcChhheEeec
Confidence            46789999999999999999999998887755

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=94.54  E-value=0.29  Score=31.44  Aligned_cols=36  Identities=31%  Similarity=0.502  Sum_probs=31.2

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      +-+.|.-.|++|.|..+.+.|.+.|.+|.+.+..-.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~   37 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS   37 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence            346788899999999999999999999998876544

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=94.50  E-value=0.028  Score=35.79  Aligned_cols=36  Identities=11%  Similarity=-0.000  Sum_probs=30.6

Q ss_pred             EEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032116           99 EITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG  134 (147)
Q Consensus        99 eV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~  134 (147)
                      -+...||+|+|.+++++|.+.|.||.+.+..++++.
T Consensus         3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~   38 (69)
T cd04901           3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEI   38 (69)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCE
Confidence            357899999999999999999999988877765543

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=94.36  E-value=0.062  Score=40.00  Aligned_cols=30  Identities=20%  Similarity=0.439  Sum_probs=28.1

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVK  125 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~K  125 (147)
                      -||.|...||+|+-..+.++|.++|.||.-
T Consensus         4 avITV~GkDr~GIva~is~vLAe~~vNIld   33 (90)
T COG3830           4 AVITVIGKDRVGIVAAVSRVLAEHGVNILD   33 (90)
T ss_pred             EEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence            589999999999999999999999999974

>PRK07334 threonine dehydratase; Provisional

Probab=93.66  E-value=0.23  Score=43.17  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      +-++|...||+|+|.+|+++|++.+.||.+....++
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~  362 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL  362 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence            679999999999999999999999999999998865

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=93.33  E-value=0.16  Score=34.36  Aligned_cols=29  Identities=17%  Similarity=0.481  Sum_probs=24.9

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEE
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKA  126 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA  126 (147)
                      +-+.-.|++|.|+++.+.|++.|+|+.+=
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~I   31 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHI   31 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEE
Confidence            44555889999999999999999999864

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK04435 hypothetical protein; Provisional

Probab=93.25  E-value=0.42  Score=36.82  Aligned_cols=48  Identities=19%  Similarity=0.237  Sum_probs=41.1

Q ss_pred             EEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           85 VIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        85 V~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      .-++.....+-.-+.+...||+|+|.++.++|.+.|.||..-..+...
T Consensus        59 f~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~  106 (147)
T PRK04435         59 FPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPL  106 (147)
T ss_pred             ECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCC
Confidence            345666788889999999999999999999999999999987765543

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=93.21  E-value=0.5  Score=37.39  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=32.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      ++.|...|++|.|.+++..|++.|+||..-.+.-.+
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~   38 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTE   38 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecC
Confidence            578899999999999999999999999888777655

acetohydroxyacid synthase is a synonym.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=93.12  E-value=0.26  Score=41.86  Aligned_cols=34  Identities=12%  Similarity=0.231  Sum_probs=31.0

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF  129 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS  129 (147)
                      -+|.|...||+|+..++++.|.++|+||....-.
T Consensus         8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~   41 (286)
T PRK13011          8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF   41 (286)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence            4689999999999999999999999999977665

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=93.09  E-value=0.2  Score=42.73  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=31.4

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF  129 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS  129 (147)
                      -|+.|...||+|+...+++.|.+.|+||.-..=.
T Consensus        10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010         10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            4899999999999999999999999999987664

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.79  E-value=0.25  Score=47.09  Aligned_cols=42  Identities=17%  Similarity=0.163  Sum_probs=37.2

Q ss_pred             CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032116           93 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG  134 (147)
Q Consensus        93 ~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~  134 (147)
                      ..-+-++|...||.|+|.+|+++|.+.|.||....+.++.+.
T Consensus       624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~  665 (702)
T PRK11092        624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGR  665 (702)
T ss_pred             eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCC
Confidence            345678999999999999999999999999999999887643

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=92.60  E-value=0.36  Score=46.49  Aligned_cols=55  Identities=25%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             EEEcCC-CCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116           85 VIIDLD-SDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF  139 (147)
Q Consensus        85 V~IDNd-ss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF  139 (147)
                      |.-|.+ +...-.=++|.+.||.|+|-+++++|.+.+.||.+....++.+.+.+..
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~  671 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ  671 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence            444454 3456677899999999999999999999999999999988866554443

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=92.56  E-value=0.34  Score=41.18  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=32.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      |+.|...||+|+...+++.|.+.|+||.-..-..+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~   36 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD   36 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc
Confidence            68899999999999999999999999998887664

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=92.19  E-value=0.41  Score=34.51  Aligned_cols=54  Identities=11%  Similarity=0.202  Sum_probs=37.0

Q ss_pred             cCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEE
Q 032116           88 DLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI  141 (147)
Q Consensus        88 DNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd-Gd~~~DVFyV  141 (147)
                      ++......|-+-+.-.|++|.|+++.+.|++.|+|+.+=.=--- +....=.|||
T Consensus         7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV   61 (90)
T cd04931           7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI   61 (90)
T ss_pred             cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE
Confidence            44444455677777799999999999999999999987533221 1222345666

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=92.17  E-value=0.55  Score=37.85  Aligned_cols=34  Identities=18%  Similarity=0.201  Sum_probs=31.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL  130 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST  130 (147)
                      ++.|...||||+|..++..|...|+||..=.+..
T Consensus         4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~   37 (174)
T CHL00100          4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP   37 (174)
T ss_pred             EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence            5889999999999999999999999999988865

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=92.00  E-value=0.77  Score=44.41  Aligned_cols=39  Identities=31%  Similarity=0.328  Sum_probs=35.6

Q ss_pred             CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           94 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        94 ~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      .-.-++|.+.||+|+|.+|+++|++.+.||....+.++.
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~  703 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDT  703 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence            456789999999999999999999999999999998864

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=91.58  E-value=1  Score=35.87  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=31.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      ++.|...|++|.|.+++..|++.|.||..-.+.-..
T Consensus         4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te   39 (161)
T PRK11895          4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTE   39 (161)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecC
Confidence            578899999999999999999999999887776544

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=91.29  E-value=0.19  Score=41.37  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=27.5

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVK  125 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~K  125 (147)
                      -.|+|.+.||+|++-++++.|..+|.+|..
T Consensus        93 v~v~v~a~DrpgIv~~~T~lf~~~~inie~  122 (176)
T COG2716          93 VWVYVDANDRPGIVEEFTALFDGHGINIEN  122 (176)
T ss_pred             EEEEEEecCCccHHHHHHHHHHhcCCchhh
Confidence            468999999999999999999999999863

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=91.08  E-value=1.6  Score=28.81  Aligned_cols=28  Identities=21%  Similarity=0.491  Sum_probs=24.4

Q ss_pred             EEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032116          100 ITFGDRLGALLDTMNALKNLGLNVVKAN  127 (147)
Q Consensus       100 V~s~DR~GLLldivqaL~dLgLnI~KA~  127 (147)
                      +.-.|++|.|.++.++|++.|+||.+-.
T Consensus         4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~   31 (75)
T cd04880           4 FSLKNKPGALAKALKVFAERGINLTKIE   31 (75)
T ss_pred             EEeCCcCCHHHHHHHHHHHCCCCEEEEE
Confidence            3446899999999999999999998873

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=90.56  E-value=0.99  Score=42.76  Aligned_cols=43  Identities=21%  Similarity=0.130  Sum_probs=37.6

Q ss_pred             CCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116           93 PDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK  135 (147)
Q Consensus        93 ~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~  135 (147)
                      ..-+-++|...||+|+|.+|+++|.+.|.||.+..+.++.+..
T Consensus       608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~  650 (683)
T TIGR00691       608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKRE  650 (683)
T ss_pred             eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCE
Confidence            3456789999999999999999999999999999998875433

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=89.88  E-value=0.99  Score=43.18  Aligned_cols=45  Identities=16%  Similarity=0.352  Sum_probs=39.5

Q ss_pred             EEEEEe-CCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032116           97 IVEITF-GDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT  142 (147)
Q Consensus        97 IVeV~s-~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVT  142 (147)
                      .|.|.. +|++|+|..+..+|...|++|+.|.+.++|.+ +..|-|.
T Consensus       548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~~-~~~~~v~  593 (693)
T PRK00227        548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGPW-SAEFDVR  593 (693)
T ss_pred             eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCce-EEEEEEe
Confidence            556666 99999999999999999999999999996665 6889875

>PRK08818 prephenate dehydrogenase; Provisional

Probab=89.61  E-value=1.1  Score=39.62  Aligned_cols=47  Identities=17%  Similarity=0.327  Sum_probs=37.3

Q ss_pred             CceEEEEEeC-CcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116           94 DATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI  141 (147)
Q Consensus        94 ~aTIVeV~s~-DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV  141 (147)
                      ..+-+-++-. |+||.|+++.+.|.+.|+||.+=.+ .......-.|||
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i  341 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRI  341 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEE
Confidence            4555666665 9999999999999999999999988 444444555887

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=88.91  E-value=0.81  Score=31.70  Aligned_cols=31  Identities=26%  Similarity=0.538  Sum_probs=25.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEE
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANV  128 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~I  128 (147)
                      +-+.-.|++|.|+++.+.|++.|+|+.+=.=
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeS   33 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIES   33 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEe
Confidence            3344579999999999999999999987543

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=88.69  E-value=2.3  Score=30.26  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS  133 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd  133 (147)
                      .+.+...|++|.|..++.+|..-|.||.+=.+.--.+
T Consensus         4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~   40 (76)
T PRK06737          4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDT   40 (76)
T ss_pred             EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCC
Confidence            4688999999999999999999999999888874333

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=88.55  E-value=2.5  Score=31.63  Aligned_cols=50  Identities=12%  Similarity=0.183  Sum_probs=37.9

Q ss_pred             CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEE
Q 032116           90 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFA  140 (147)
Q Consensus        90 dss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFy  140 (147)
                      .+....| +.|...|++|.|..++..|..-|.||++=.+.--++.-+-.+.
T Consensus         4 ~~~~~~t-isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmt   53 (96)
T PRK08178          4 TTHDNVI-LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIW   53 (96)
T ss_pred             CCCCCEE-EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEE
Confidence            3444444 7999999999999999999999999998877654443333333

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=87.88  E-value=2.2  Score=31.29  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=34.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEE
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNK  138 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DV  138 (147)
                      ++.|...|++|.|..++..|..-|+||.+=.++--.+.-+-.
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSR   45 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISN   45 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceE
Confidence            578899999999999999999999999998887544433333

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.35  E-value=2.3  Score=27.94  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=27.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      +.|.-.||||.|..++++|.. |.||..-+-.-.
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~   33 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQ   33 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence            357889999999999999999 999986555443

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=87.05  E-value=3.1  Score=24.76  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=24.5

Q ss_pred             eCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116          102 FGDRLGALLDTMNALKNLGLNVVKANVF  129 (147)
Q Consensus       102 s~DR~GLLldivqaL~dLgLnI~KA~IS  129 (147)
                      ..|++|.+.++.++|.+.|++|..-+..
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~   35 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQS   35 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence            4788999999999999999999876654

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=86.18  E-value=0.34  Score=39.91  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=43.1

Q ss_pred             CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEE
Q 032116           92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKF  139 (147)
Q Consensus        92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVF  139 (147)
                      ..+|=||.+.+.||||+...++++..+-|+|+..+++++.|+.|.=+-
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~   49 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIM   49 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEE
Confidence            357789999999999999999999999999999999999999875443

>PRK11899 prephenate dehydratase; Provisional

Probab=85.86  E-value=4.3  Score=34.66  Aligned_cols=47  Identities=17%  Similarity=0.227  Sum_probs=35.5

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC-CCcceEEEEE
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD-SSGKHNKFAI  141 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd-Gd~~~DVFyV  141 (147)
                      -|-+-+.-.||+|.|+++.++|++.|+|+.|=.=-=. ++-..=.|||
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i  241 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA  241 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE
Confidence            4666677789999999999999999999987543322 3333557887

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=85.73  E-value=4  Score=28.13  Aligned_cols=27  Identities=15%  Similarity=0.315  Sum_probs=23.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEE
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVK  125 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~K  125 (147)
                      ++.|.-.||||-|..+.++|.  |-||..
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~   29 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITE   29 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeE
Confidence            688999999999999999999  556553

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=85.63  E-value=2.2  Score=32.02  Aligned_cols=33  Identities=3%  Similarity=0.182  Sum_probs=27.7

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEE
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKAN  127 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~  127 (147)
                      -|-+-+.-.|++|.|+++.+.|++.|+|+.+=.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IE   73 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLE   73 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEE
Confidence            355666669999999999999999999998643

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=84.82  E-value=3  Score=33.42  Aligned_cols=40  Identities=18%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcce
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH  136 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~  136 (147)
                      |+-|.-.|+||-|..|..+|.|.|+|+.-.|-...-.++.
T Consensus        71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KA  110 (142)
T COG4747          71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKA  110 (142)
T ss_pred             EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceE
Confidence            6788899999999999999999999999988877665543

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=83.76  E-value=3.5  Score=25.66  Aligned_cols=27  Identities=22%  Similarity=0.213  Sum_probs=23.3

Q ss_pred             eCCcccHHHHHHHHHHhcCceEEEEEE
Q 032116          102 FGDRLGALLDTMNALKNLGLNVVKANV  128 (147)
Q Consensus       102 s~DR~GLLldivqaL~dLgLnI~KA~I  128 (147)
                      -.|++|.+..+.++|.+.|++|.--+-
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~   35 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQ   35 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence            368899999999999999999985543

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=82.64  E-value=0.98  Score=31.60  Aligned_cols=29  Identities=21%  Similarity=0.244  Sum_probs=26.1

Q ss_pred             EEEEEeCC-cccHHHHHHHHHHhcCceEEE
Q 032116           97 IVEITFGD-RLGALLDTMNALKNLGLNVVK  125 (147)
Q Consensus        97 IVeV~s~D-R~GLLldivqaL~dLgLnI~K  125 (147)
                      ||.|-..| +.|++..++++|.++|+||..
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~   30 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR   30 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence            56788899 999999999999999999863

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=82.07  E-value=3.4  Score=27.39  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             CCCceEEEEEeC----CcccHHHHHHHHHHhcCceEEEEE
Q 032116           92 DPDATIVEITFG----DRLGALLDTMNALKNLGLNVVKAN  127 (147)
Q Consensus        92 s~~aTIVeV~s~----DR~GLLldivqaL~dLgLnI~KA~  127 (147)
                      .++...+.|...    |.+|++..+.++|.+-|++|.--.
T Consensus         3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            345677788777    799999999999999999996544

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=81.21  E-value=5.7  Score=34.52  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=36.3

Q ss_pred             CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC-cceEEEEE
Q 032116           94 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS-GKHNKFAI  141 (147)
Q Consensus        94 ~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd-~~~DVFyV  141 (147)
                      .-|.+-+.-.|+||.|+++..+|+..|+|..|=+--=-+. -..=.|||
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i  241 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI  241 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE
Confidence            4788888888999999999999999999998754332332 23445665

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=81.09  E-value=7.8  Score=27.43  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=31.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL  130 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST  130 (147)
                      .+.+...|++|.|..++.++..-|.||.+=.+.-
T Consensus         5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~   38 (76)
T PRK11152          5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ   38 (76)
T ss_pred             EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence            5788999999999999999999999999988876

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=80.79  E-value=6.8  Score=26.15  Aligned_cols=30  Identities=17%  Similarity=0.234  Sum_probs=25.6

Q ss_pred             CcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116          104 DRLGALLDTMNALKNLGLNVVKANVFLDSS  133 (147)
Q Consensus       104 DR~GLLldivqaL~dLgLnI~KA~ISTdGd  133 (147)
                      |++|.|..++.+|..-|.||+.=.++...+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~   30 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTED   30 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCC
Confidence            789999999999999999999999887333

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=80.39  E-value=3.7  Score=32.87  Aligned_cols=39  Identities=18%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcce
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKH  136 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~  136 (147)
                      +.|+..||+|=|..+..+|+..|+||+-=.|.--|+.-+
T Consensus         6 ISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGI   44 (142)
T COG4747           6 ISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGI   44 (142)
T ss_pred             EEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcce
Confidence            678999999999999999999999999999988777543

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=80.28  E-value=0.6  Score=34.13  Aligned_cols=47  Identities=21%  Similarity=0.222  Sum_probs=36.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC----CCcceEEEEEecc
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLD----SSGKHNKFAITKA  144 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd----Gd~~~DVFyVTD~  144 (147)
                      ||++..-||-.+||++-|||.||.-|=+|.|.-.    -+|-+=.|...|.
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~   53 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH   53 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC
Confidence            7888999999999999999999999999999632    2344444444443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06382 threonine dehydratase; Provisional

Probab=80.22  E-value=8.2  Score=33.75  Aligned_cols=38  Identities=29%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             CCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116           92 DPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF  129 (147)
Q Consensus        92 s~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS  129 (147)
                      +.+-+-+.|.-.||+|.|.++++.|.+.|.||.+-...
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~  364 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD  364 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            45677899999999999999999999999999876553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.25
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.13
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.63
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	97.45
1u8s_A	192	Glycine cleavage system transcriptional repressor,	97.33
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.13
2nyi_A	195	Unknown protein; protein structure initiative, PSI	96.88
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	94.32
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	94.19
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	93.39
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	93.26
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	92.68
2f06_A	144	Conserved hypothetical protein; structural genomic	92.59
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	92.58
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	92.57
2f06_A	144	Conserved hypothetical protein; structural genomic	92.37
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	92.28
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	91.75
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	89.36
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	86.87
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.02
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	83.41
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	83.37
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	80.13

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.25  E-value=1.6e-06  Score=66.54  Aligned_cols=54  Identities=15%  Similarity=0.091  Sum_probs=48.8

Q ss_pred             CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC--CcceEEEEEec
Q 032116           90 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS--SGKHNKFAITK  143 (147)
Q Consensus        90 dss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG--d~~~DVFyVTD  143 (147)
                      +.....++++|...||+|++..|+++|.+.|+||..+...+++  ++..|.||++.
T Consensus        88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~  143 (195)
T 2nyi_A           88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS  143 (195)
T ss_dssp             CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE
T ss_pred             CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE
Confidence            3445678999999999999999999999999999999999999  77889999864

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.13  E-value=5.9e-06  Score=62.25  Aligned_cols=55  Identities=15%  Similarity=0.132  Sum_probs=46.3

Q ss_pred             CCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC----cceEEEEEec
Q 032116           89 LDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS----GKHNKFAITK  143 (147)
Q Consensus        89 Ndss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd----~~~DVFyVTD  143 (147)
                      ++.....+++.|...||+|+|.+++++|.+.|+||..++..|+++    +..|.||++.
T Consensus        87 ~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~  145 (192)
T 1u8s_A           87 HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI  145 (192)
T ss_dssp             CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE
T ss_pred             CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE
Confidence            355567789999999999999999999999999999999999984    5789999864

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.63  E-value=0.00018  Score=46.67  Aligned_cols=46  Identities=9%  Similarity=0.004  Sum_probs=38.9

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEE
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFA  140 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFy  140 (147)
                      .+.+.|...||+|+|.+++++|.+.|+||....+...++.+..+|-
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~   50 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLM   50 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEE
Confidence            4678899999999999999999999999999999887664444443

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=97.45  E-value=0.00059  Score=45.00  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=36.4

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK  135 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~  135 (147)
                      -.++.|...||+|+|.+++++|.+.|.||......+..+.+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~   45 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYF   45 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEE
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEE
Confidence            35789999999999999999999999999999888876544

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=97.33  E-value=0.00062  Score=51.11  Aligned_cols=49  Identities=12%  Similarity=0.152  Sum_probs=42.9

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEec
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK  143 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD  143 (147)
                      .-+|.|...||+|++..++++|.+.|+||..+.+.+.++++.=.|.|..
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~   54 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG   54 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence            3578999999999999999999999999999999987777766777643

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.13  E-value=0.00074  Score=47.63  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCC
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSS  133 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd  133 (147)
                      ++|.+.||+|+|.|++++|.+.|.||....+.+.|.
T Consensus         3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~   38 (190)
T 2jhe_A            3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR   38 (190)
T ss_dssp             EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE
T ss_pred             EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE
Confidence            689999999999999999999999999999988854

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=96.88  E-value=0.0033  Score=47.98  Aligned_cols=48  Identities=23%  Similarity=0.216  Sum_probs=41.6

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT  142 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVT  142 (147)
                      -.+|.|...||+||...++.+|.++|+||..|.+.+.+++|.=.|.|.
T Consensus         5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~   52 (195)
T 2nyi_A            5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS   52 (195)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE
Confidence            358999999999999999999999999999999997666653377775

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=94.32  E-value=0.059  Score=44.14  Aligned_cols=41  Identities=12%  Similarity=0.195  Sum_probs=37.0

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK  135 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~  135 (147)
                      --|+.|...||+|+...+++.|.+.|.||.-..-...+++|
T Consensus        12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f   52 (415)
T 3p96_A           12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRL   52 (415)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEE
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEe
Confidence            45899999999999999999999999999998887777765

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=94.19  E-value=0.089  Score=40.48  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=32.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      .++|...||+|+|.+++++|++.|.||....+....
T Consensus         5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~   40 (164)
T 2f1f_A            5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTD   40 (164)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECS
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecC
Confidence            578999999999999999999999999998887543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=93.39  E-value=0.12  Score=43.20  Aligned_cols=36  Identities=22%  Similarity=0.176  Sum_probs=33.4

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      -|+.|...||+|+...+++.|.+.|+||....-..+
T Consensus        23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d   58 (302)
T 3o1l_A           23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD   58 (302)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence            479999999999999999999999999999887765

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=93.26  E-value=0.16  Score=39.27  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=31.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      .+.|...||+|.|.+++++|++.|.||....+...
T Consensus         6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t   40 (165)
T 2pc6_A            6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPT   40 (165)
T ss_dssp             EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEEC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEec
Confidence            57899999999999999999999999999888643

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=92.68  E-value=0.099  Score=43.00  Aligned_cols=36  Identities=25%  Similarity=0.311  Sum_probs=29.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCC
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDS  132 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdG  132 (147)
                      -++|...||+|+|.+++++|++.+.||...+..++.
T Consensus         6 tL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            478999999999999999999999999999999865

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=92.59  E-value=0.35  Score=34.31  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF  129 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS  129 (147)
                      .++-|.-.|+||.|..+.++|.+.|+||...+..
T Consensus        73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~  106 (144)
T 2f06_A           73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF  106 (144)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEE
Confidence            5788888899999999999999999999876665

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=92.58  E-value=0.18  Score=41.75  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=33.5

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      --++.|...||+|+...+++.|.+.|+||....-.+|
T Consensus        10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d   46 (292)
T 3lou_A           10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD   46 (292)
T ss_dssp             EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec
Confidence            3589999999999999999999999999999887753

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=92.57  E-value=0.25  Score=40.73  Aligned_cols=36  Identities=25%  Similarity=0.331  Sum_probs=32.8

Q ss_pred             ceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116           95 ATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL  130 (147)
Q Consensus        95 aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST  130 (147)
                      --++.|...||+|+...+++.|.+.|+||....-.+
T Consensus         7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   42 (287)
T 3nrb_A            7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN   42 (287)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee
Confidence            358999999999999999999999999999888754

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=92.37  E-value=0.44  Score=33.75  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=29.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL  130 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST  130 (147)
                      -+.|.-.||+|.|.++.+.|.+.|+||..-.+..
T Consensus         8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~   41 (144)
T 2f06_A            8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE   41 (144)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence            4667888999999999999999999999877753

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=92.28  E-value=0.23  Score=40.94  Aligned_cols=36  Identities=19%  Similarity=0.087  Sum_probs=33.1

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      -++.|...||+|+...+++.|.+.|+||....-.+|
T Consensus         9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d   44 (286)
T 3n0v_A            9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD   44 (286)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc
Confidence            579999999999999999999999999998887754

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=91.75  E-value=0.32  Score=40.03  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD  131 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd  131 (147)
                      -++.|...||+|+...+++.|.+.|+||....-.++
T Consensus         7 ~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d   42 (288)
T 3obi_A            7 YVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND   42 (288)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeec
Confidence            589999999999999999999999999998877543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=89.36  E-value=1  Score=38.32  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=46.7

Q ss_pred             CCccCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116           77 TDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI  141 (147)
Q Consensus        77 ~~~~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV  141 (147)
                      ...+|.|.|.+-..  ...+++ +.-.|+||.+-.+.++|.+.|+||..-++.+.|+...=+.-|
T Consensus       316 ~~~vn~p~~~~~~~--~~~rl~-~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          316 LSAVNFPEVSLPLH--GGRRLM-HIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             TTBSSSCCCCCCCC--SSEEEE-EEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             cceecccccccCcC--CcceEE-EEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            34567666654422  234444 777899999999999999999999999999988876555543

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=86.87  E-value=2.3  Score=33.89  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVF  129 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS  129 (147)
                      -.+.|...||+|.|..++.+|++-|+||..-.+.
T Consensus        30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~   63 (193)
T 2fgc_A           30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVG   63 (193)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             EEEEEEECCCChHHHHHHHHHHHCCceEEEEEee
Confidence            4688899999999999999999999999987775

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.02  E-value=2.8  Score=36.35  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=47.4

Q ss_pred             CCCccCCCEEEEcCCCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcc
Q 032116           76 DTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGK  135 (147)
Q Consensus        76 ~~~~~~~PrV~IDNdss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~  135 (147)
                      ....+|.|.|....  .+...=+-+.-.|+||.|-.|.++|.+.|+||..=+-.|.|+..
T Consensus       326 ~~~~Vn~p~~~~~~--~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~  383 (416)
T 3k5p_A          326 TVGAVNFPQVQLPP--RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVG  383 (416)
T ss_dssp             CTTBSSSCCCCCCC--CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCE
T ss_pred             CCceeeCCCcCCCC--CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceE
Confidence            34567777776543  34556677888999999999999999999999999999999974

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=83.41  E-value=1.1  Score=36.93  Aligned_cols=48  Identities=13%  Similarity=0.190  Sum_probs=35.6

Q ss_pred             CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032116           94 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI  141 (147)
Q Consensus        94 ~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyV  141 (147)
                      +-|-+-+.-.|++|.|+++.+.|++.|+|..|=.=-- .+.-..=.|||
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv  247 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA  247 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE
Confidence            3566667777999999999999999999998743222 23334667877

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=83.37  E-value=1.3  Score=36.40  Aligned_cols=49  Identities=16%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             CCceEEEEEe---CCcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032116           93 PDATIVEITF---GDRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI  141 (147)
Q Consensus        93 ~~aTIVeV~s---~DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyV  141 (147)
                      .+-|-+-+.-   .|++|.|+++.+.|++.|+|..|=.=-- .+.-..=.|||
T Consensus       184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi  236 (267)
T 2qmw_A          184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV  236 (267)
T ss_dssp             SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE
T ss_pred             CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEE
Confidence            3556666777   8999999999999999999998743222 23334567777

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=80.13  E-value=1.9  Score=36.26  Aligned_cols=49  Identities=24%  Similarity=0.363  Sum_probs=35.2

Q ss_pred             CCceEEEEEeC-CcccHHHHHHHHHHhcCceEEEEEEEe-CCCcceEEEEE
Q 032116           93 PDATIVEITFG-DRLGALLDTMNALKNLGLNVVKANVFL-DSSGKHNKFAI  141 (147)
Q Consensus        93 ~~aTIVeV~s~-DR~GLLldivqaL~dLgLnI~KA~IST-dGd~~~DVFyV  141 (147)
                      .+-|-+-+.-. |++|.|+++.+.|++.|+|..|=.=-- .+.-..=.|||
T Consensus       199 ~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi  249 (313)
T 3mwb_A          199 ADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSI  249 (313)
T ss_dssp             SEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEE
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEE
Confidence            34577777774 999999999999999999987643221 23333457777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.72
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	97.6
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	97.46
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.16
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	96.75
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	96.36
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	95.86
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	94.84
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	93.63
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.5
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	92.3
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	88.6
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	88.59

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.72  E-value=3.7e-05  Score=50.32  Aligned_cols=49  Identities=16%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEeccc
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITKAY  145 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD~d  145 (147)
                      |+.|.-.||+|-|.+++++|.+.|+||+-.|+...+++.+=+|-+-|.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~   49 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMD   49 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHH
Confidence            6889999999999999999999999999999999999999888876543

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.60  E-value=0.00012  Score=48.47  Aligned_cols=49  Identities=12%  Similarity=0.165  Sum_probs=43.6

Q ss_pred             CceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEe
Q 032116           94 DATIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAIT  142 (147)
Q Consensus        94 ~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVT  142 (147)
                      ..-||.|...||||++.+++++|.+.|+||.-....+.|+.+.=.+.|.
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~   52 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS   52 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence            4568999999999999999999999999999999999999887666553

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.46  E-value=0.00035  Score=45.42  Aligned_cols=46  Identities=15%  Similarity=0.160  Sum_probs=39.6

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI  141 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV  141 (147)
                      .|+.|...||+|++.+++++|.+.|.||....-.++++.|.=.+.|
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v   48 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV   48 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEE
Confidence            4889999999999999999999999999999888887766444444

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.16  E-value=0.00053  Score=45.72  Aligned_cols=34  Identities=12%  Similarity=0.072  Sum_probs=29.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL  130 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST  130 (147)
                      -|.|...||+|++.++++.|.+.|+||....-.+
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~   41 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT   41 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence            3678899999999999999999999998766544

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.75  E-value=0.0023  Score=41.84  Aligned_cols=46  Identities=11%  Similarity=0.130  Sum_probs=40.0

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEEec
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAITK  143 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyVTD  143 (147)
                      +.|...||+|.|.+++.+|.+-|+||..-.+...++..+=.+-|.|
T Consensus         6 isV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           6 LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            5788999999999999999999999999999888887777764443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.36  E-value=0.0017  Score=42.47  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=27.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEe
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFL  130 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~IST  130 (147)
                      -++|...||+|+|.++++++.+.|.||......+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~   36 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL   36 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeec
Confidence            4789999999999999999999999999887765

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.86  E-value=0.012  Score=38.23  Aligned_cols=44  Identities=27%  Similarity=0.274  Sum_probs=36.3

Q ss_pred             eEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeC--CCcceEEE
Q 032116           96 TIVEITFGDRLGALLDTMNALKNLGLNVVKANVFLD--SSGKHNKF  139 (147)
Q Consensus        96 TIVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTd--Gd~~~DVF  139 (147)
                      +.+-|.-.||||.|-.+.++|.+.|+||...+++.+  |+..+=++
T Consensus         4 ~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi   49 (78)
T d1ygya3           4 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILL   49 (78)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEE
Confidence            567788899999999999999999999999999774  44444444

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.029  Score=36.54  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=33.5

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCc
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSG  134 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~  134 (147)
                      -+-|.-.||||.|..|+++|.+.|+||..-...+.++.
T Consensus        13 rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~   50 (84)
T d1sc6a3          13 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQM   50 (84)
T ss_dssp             EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSE
T ss_pred             EEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCC
Confidence            34456799999999999999999999999999988875

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.63  E-value=0.13  Score=33.40  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=32.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEE
Q 032116           98 VEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI  141 (147)
Q Consensus        98 VeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyV  141 (147)
                      +-+.-.||||.|+++.+.|++.|+|+.|=.=- +.+....=.|||
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i   49 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV   49 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE
Confidence            33445799999999999999999999875322 244444557877

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.50  E-value=0.062  Score=36.47  Aligned_cols=52  Identities=12%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             CCCCCceEEEEEeCCcccHHHHHHHHHHhcCceEEEEEEE-eCCCcceEEEEE
Q 032116           90 DSDPDATIVEITFGDRLGALLDTMNALKNLGLNVVKANVF-LDSSGKHNKFAI  141 (147)
Q Consensus        90 dss~~aTIVeV~s~DR~GLLldivqaL~dLgLnI~KA~IS-TdGd~~~DVFyV  141 (147)
                      .+..+-|-+-+...|++|.|+++.+.|++.|+|+.+=.=- +.+....=.|||
T Consensus        11 ~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i   63 (97)
T d1phza1          11 SNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT   63 (97)
T ss_dssp             CCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE
T ss_pred             CCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE
Confidence            3445567777778899999999999999999998754221 123333445887

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=92.30  E-value=0.32  Score=32.09  Aligned_cols=45  Identities=16%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI  141 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV  141 (147)
                      ++.+...|++|.|..++..|..-|+||.+-.+.--.+.-+-.+-|
T Consensus         5 tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~ti   49 (78)
T d2fgca2           5 LVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVI   49 (78)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEE
Confidence            578889999999999999999999999999888766655555544

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=88.60  E-value=0.52  Score=30.98  Aligned_cols=44  Identities=16%  Similarity=0.252  Sum_probs=35.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEE
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFA  140 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFy  140 (147)
                      .+.|...|++|.|..++..|..-|.||++-.+.-..+.-+-.+-
T Consensus         4 tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmt   47 (77)
T d2pc6a2           4 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMT   47 (77)
T ss_dssp             EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEE
T ss_pred             EEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEE
Confidence            46888999999999999999999999999998854443333443

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.54  Score=30.80  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhcCceEEEEEEEeCCCcceEEEEE
Q 032116           97 IVEITFGDRLGALLDTMNALKNLGLNVVKANVFLDSSGKHNKFAI  141 (147)
Q Consensus        97 IVeV~s~DR~GLLldivqaL~dLgLnI~KA~ISTdGd~~~DVFyV  141 (147)
                      .+.|...|++|.|..++..|..-|+||++-.+.--.+.-+-.|-|
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~ti   47 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTI   47 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEE
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEE
Confidence            467888999999999999999999999999988444444444444