Citrus Sinensis ID: 032125

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
cccccccccEEEEEcccccEEEEEEEEcccEEEEEccEEcccccHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEccccccccccccccccccccccccc
cccccccccEEEEEccccEEEEEEEEEcccEEEEEcccccEEccHHHHHHHHHcHHHEHcHHHcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccHccHHHHHHHHHHHcHHHHccccccccccccccccHHHHHHHccc
mataapktesvqcfgrkKTAVAVTYCKRgrglikingcpielvepeilrfkafEPILLlgrhrfngvdmrirvkggghtSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRtllvadprrcepkkfggrgarARFQKSYR
mataapktesvqcfgrkktaVAVTyckrgrglikingcpieLVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYdrtllvadprrcepkkfggrgararfqksyr
MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
**********VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP**********************
******K****QCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKS*R
***********QCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK***************
*******TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPR*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query147 2.2.26 [Sep-21-2011]
P46293145 40S ribosomal protein S16 N/A no 0.979 0.993 0.937 6e-73
O22647145 40S ribosomal protein S16 N/A no 0.979 0.993 0.895 6e-72
Q9SK22146 40S ribosomal protein S16 yes no 0.993 1.0 0.884 8e-72
Q42340146 40S ribosomal protein S16 yes no 0.993 1.0 0.877 1e-71
Q9M8X9146 40S ribosomal protein S16 no no 0.993 1.0 0.836 4e-67
Q9XEK7142 40S ribosomal protein S16 N/A no 0.945 0.978 0.871 7e-67
Q0IQF7149 40S ribosomal protein S16 yes no 0.993 0.979 0.808 1e-64
A2ZB00149 40S ribosomal protein S16 N/A no 0.993 0.979 0.808 1e-64
P16149145 40S ribosomal protein S16 N/A no 0.986 1.0 0.816 2e-61
P62250146 40S ribosomal protein S16 no no 0.993 1.0 0.734 1e-59
>sp|P46293|RS16_GOSHI 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1 Back     alignment and function desciption
 Score =  272 bits (695), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 135/144 (93%), Positives = 136/144 (94%)

Query: 4   AAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHR 63
           A    ESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR R
Sbjct: 2   AEKAIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQR 61

Query: 64  FNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 123
           F GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVA
Sbjct: 62  FTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVA 121

Query: 124 DPRRCEPKKFGGRGARARFQKSYR 147
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 122 DPRRCEPKKFGGRGARARFQKSYR 145

Gossypium hirsutum (taxid: 3635)
>sp|O22647|RS16_FRIAG 40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1 Back     alignment and function description
>sp|Q9SK22|RS161_ARATH 40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1 Back     alignment and function description
>sp|Q42340|RS163_ARATH 40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1 Back     alignment and function description
>sp|Q9M8X9|RS162_ARATH 40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1 Back     alignment and function description
>sp|Q9XEK7|RS16_TORRU 40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1 Back     alignment and function description
>sp|Q0IQF7|RS16_ORYSJ 40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1 Back     alignment and function description
>sp|A2ZB00|RS16_ORYSI 40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1 Back     alignment and function description
>sp|P16149|RS16_LUPPO 40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1 Back     alignment and function description
>sp|P62250|RS16_RAT 40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query147
313586545147 40S ribosomal protein S16A [Hevea brasil 1.0 1.0 0.952 1e-74
313586547146 40S ribosomal protein S16B [Hevea brasil 0.993 1.0 0.952 2e-74
255555403151 ribosomal protein S9, putative [Ricinus 1.0 0.973 0.938 2e-74
224060503146 predicted protein [Populus trichocarpa] 0.993 1.0 0.959 4e-74
449438394144 PREDICTED: 40S ribosomal protein S16-lik 0.972 0.993 0.972 5e-74
313586549146 40S ribosomal protein S16C [Hevea brasil 0.993 1.0 0.945 1e-73
363901080143 putative ribosomal protein S9, partial [ 0.972 1.0 0.965 2e-73
6984222144 40S ribosomal protein S16 [Euphorbia esu 0.979 1.0 0.951 3e-73
116778782143 unknown [Picea sitchensis] gi|116781861| 0.952 0.979 0.964 8e-73
351724761157 uncharacterized protein LOC100527911 [Gl 0.945 0.885 0.978 8e-73
>gi|313586545|gb|ADR71283.1| 40S ribosomal protein S16A [Hevea brasiliensis] Back     alignment and taxonomy information
 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 140/147 (95%), Positives = 141/147 (95%)

Query: 1   MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLG 60
           MA  A   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKA+EPILLLG
Sbjct: 1   MAAPAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLG 60

Query: 61  RHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTL 120
           RHRF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTL
Sbjct: 61  RHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTL 120

Query: 121 LVADPRRCEPKKFGGRGARARFQKSYR 147
           LVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 LVADPRRCEPKKFGGRGARARFQKSYR 147

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|313586547|gb|ADR71284.1| 40S ribosomal protein S16B [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255555403|ref|XP_002518738.1| ribosomal protein S9, putative [Ricinus communis] gi|223542119|gb|EEF43663.1| ribosomal protein S9, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224060503|ref|XP_002300225.1| predicted protein [Populus trichocarpa] gi|118481666|gb|ABK92774.1| unknown [Populus trichocarpa] gi|118483691|gb|ABK93739.1| unknown [Populus trichocarpa] gi|118487129|gb|ABK95393.1| unknown [Populus trichocarpa] gi|222847483|gb|EEE85030.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438394|ref|XP_004136973.1| PREDICTED: 40S ribosomal protein S16-like [Cucumis sativus] gi|449445892|ref|XP_004140706.1| PREDICTED: 40S ribosomal protein S16-like [Cucumis sativus] gi|449464500|ref|XP_004149967.1| PREDICTED: 40S ribosomal protein S16-like [Cucumis sativus] gi|449495622|ref|XP_004159897.1| PREDICTED: 40S ribosomal protein S16-like [Cucumis sativus] gi|449497669|ref|XP_004160469.1| PREDICTED: 40S ribosomal protein S16-like [Cucumis sativus] gi|449501676|ref|XP_004161434.1| PREDICTED: 40S ribosomal protein S16-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|313586549|gb|ADR71285.1| 40S ribosomal protein S16C [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|363901080|gb|AEW43294.1| putative ribosomal protein S9, partial [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|6984222|gb|AAF34799.1|AF227979_1 40S ribosomal protein S16 [Euphorbia esula] Back     alignment and taxonomy information
>gi|116778782|gb|ABK20993.1| unknown [Picea sitchensis] gi|116781861|gb|ABK22272.1| unknown [Picea sitchensis] gi|224285075|gb|ACN40265.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|351724761|ref|NP_001235533.1| uncharacterized protein LOC100527911 [Glycine max] gi|255633528|gb|ACU17122.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query147
TAIR|locus:2052120146 AT2G09990 [Arabidopsis thalian 0.993 1.0 0.884 1.3e-66
TAIR|locus:2146273146 AT5G18380 [Arabidopsis thalian 0.993 1.0 0.877 1.7e-66
TAIR|locus:2103035146 AT3G04230 [Arabidopsis thalian 0.993 1.0 0.836 3e-62
UNIPROTKB|Q3T0X6146 RPS16 "40S ribosomal protein S 0.993 1.0 0.734 1.1e-55
UNIPROTKB|F1PKR6160 RPS16 "Uncharacterized protein 0.993 0.912 0.734 1.1e-55
UNIPROTKB|P62249146 RPS16 "40S ribosomal protein S 0.993 1.0 0.734 1.1e-55
UNIPROTKB|Q29201146 RPS16 "40S ribosomal protein S 0.993 1.0 0.734 1.1e-55
MGI|MGI:98118146 Rps16 "ribosomal protein S16" 0.993 1.0 0.734 1.1e-55
RGD|621031146 Rps16 "ribosomal protein S16" 0.993 1.0 0.734 1.1e-55
UNIPROTKB|F8WFW6172 Rps16 "40S ribosomal protein S 0.993 0.848 0.734 1.1e-55
TAIR|locus:2052120 AT2G09990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 130/147 (88%), Positives = 139/147 (94%)

Query:     1 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLG 60
             MAT  P TESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK FEPILLLG
Sbjct:     1 MATQ-PATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLG 59

Query:    61 RHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTL 120
             +HRF GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTL
Sbjct:    60 KHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTL 119

Query:   121 LVADPRRCEPKKFGGRGARARFQKSYR 147
             LVADPRRCEPKKFGGRGAR+R+QKSYR
Sbjct:   120 LVADPRRCEPKKFGGRGARSRYQKSYR 146
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2146273 AT5G18380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103035 AT3G04230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0X6 RPS16 "40S ribosomal protein S16" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKR6 RPS16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62249 RPS16 "40S ribosomal protein S16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q29201 RPS16 "40S ribosomal protein S16" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:98118 Rps16 "ribosomal protein S16" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621031 Rps16 "ribosomal protein S16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F8WFW6 Rps16 "40S ribosomal protein S16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3T0X6RS16_BOVINNo assigned EC number0.73460.99311.0yesno
Q90YQ7RS16_ICTPUNo assigned EC number0.75530.94550.9520N/Ano
Q8TT42RS9_METACNo assigned EC number0.40140.88430.9701yesno
Q6BSI7RS16_DEBHANo assigned EC number0.67140.95230.9859yesno
Q759L8RS16_ASHGONo assigned EC number0.68840.93870.9650yesno
Q2NFZ9RS9_METSTNo assigned EC number0.49280.89790.9924yesno
Q95V31RS16_SPOFRNo assigned EC number0.73380.94550.9205N/Ano
Q42340RS163_ARATHNo assigned EC number0.87750.99311.0yesno
P14131RS16_MOUSENo assigned EC number0.73460.99311.0yesno
Q8PW44RS9_METMANo assigned EC number0.38680.88430.9701yesno
A6UPX0RS9_METVSNo assigned EC number0.41720.87750.9626yesno
Q9XEK7RS16_TORRUNo assigned EC number0.87140.94550.9788N/Ano
A6VGR2RS9_METM7No assigned EC number0.43160.87750.9626yesno
Q876B4RS16_SACEXNo assigned EC number0.65210.93870.9650N/Ano
Q9W237RS16_DROMENo assigned EC number0.74280.95230.9459yesno
O94017RS16_CANAXNo assigned EC number0.70.95230.9859N/Ano
Q9V195RS9_PYRABNo assigned EC number0.44600.88430.9629yesno
Q9HQJ2RS9_HALSANo assigned EC number0.45250.88430.9848yesno
Q9M8X9RS162_ARATHNo assigned EC number0.83670.99311.0nono
Q0IQF7RS16_ORYSJNo assigned EC number0.80820.99310.9798yesno
Q9HL08RS9_THEACNo assigned EC number0.45860.85030.9689yesno
Q8U0E7RS9_PYRFUNo assigned EC number0.43880.88430.9629yesno
O60144RS16_SCHPONo assigned EC number0.69780.94550.9928yesno
Q8TVB5RS9_METKANo assigned EC number0.43790.88430.9701yesno
P62249RS16_HUMANNo assigned EC number0.73460.99311.0yesno
Q875N2RS16_KLULANo assigned EC number0.67390.93870.9650yesno
A0B6E8RS9_METTPNo assigned EC number0.40870.87750.9772yesno
P16149RS16_LUPPONo assigned EC number0.81630.98631.0N/Ano
A2ZB00RS16_ORYSINo assigned EC number0.80820.99310.9798N/Ano
B8D6F5RS9_DESK1No assigned EC number0.40680.93190.9785yesno
P54024RS9_METJANo assigned EC number0.44600.88430.9558yesno
Q22054RS16_CAEELNo assigned EC number0.68570.95230.9722yesno
Q98TR7RS16_HETFONo assigned EC number0.74820.94550.9520N/Ano
Q9SK22RS161_ARATHNo assigned EC number0.88430.99311.0yesno
Q29201RS16_PIGNo assigned EC number0.73460.99311.0yesno
P05763RS9_HALMANo assigned EC number0.42330.88430.9848yesno
Q979K1RS9_THEVONo assigned EC number0.46710.87750.9772yesno
Q54Q51RS16_DICDINo assigned EC number0.62581.01.0yesno
P0CX51RS16A_YEASTNo assigned EC number0.68840.93870.9650yesno
P0CX52RS16B_YEASTNo assigned EC number0.68840.93870.9650yesno
A4FWK9RS9_METM5No assigned EC number0.43160.87750.9626yesno
Q7SFJ9RS16_NEUCRNo assigned EC number0.66420.95230.9859N/Ano
O59299RS9_PYRHONo assigned EC number0.43880.88430.9629yesno
P46293RS16_GOSHINo assigned EC number0.93750.97950.9931N/Ano
O22647RS16_FRIAGNo assigned EC number0.89580.97950.9931N/Ano
Q6FR56RS16_CANGANo assigned EC number0.68840.93870.9650yesno
Q5JJE2RS9_PYRKONo assigned EC number0.41720.88430.9629yesno
P62251RS16_AEDAENo assigned EC number0.71420.95230.9459N/Ano
P62250RS16_RATNo assigned EC number0.73460.99311.0nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_I2557
SubName- Full=Putative uncharacterized protein; (146 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVI.1998.1
SubName- Full=Putative uncharacterized protein; (204 aa)
   •••• 0.847
eugene3.00061162
SubName- Full=Putative uncharacterized protein; (208 aa)
   •••• 0.842
estExt_fgenesh4_pm.C_LG_XVII0043
SubName- Full=Putative uncharacterized protein; (206 aa)
•  •••• 0.818
eugene3.00002480
SubName- Full=Putative uncharacterized protein; (206 aa)
•  •••• 0.812
gw1.I.3503.1
annotation not avaliable (201 aa)
•  •••• 0.801
gw1.XI.3444.1
hypothetical protein (174 aa)
•     • 0.798
eugene3.00051184
SubName- Full=Putative uncharacterized protein; (153 aa)
•  •••• 0.708
eugene3.00020474
SubName- Full=Putative uncharacterized protein; (153 aa)
•  •••• 0.707
eugene3.00051033
hypothetical protein (152 aa)
•  •••• 0.693
eugene3.00091453
SubName- Full=Putative uncharacterized protein; (151 aa)
•  •• • 0.668

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query147
PLN00210141 PLN00210, PLN00210, 40S ribosomal protein S16; Pro 1e-100
PTZ00086147 PTZ00086, PTZ00086, 40S ribosomal protein S16; Pro 7e-87
PRK00474134 PRK00474, rps9p, 30S ribosomal protein S9P; Review 2e-51
pfam00380121 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16 1e-48
TIGR03627130 TIGR03627, arch_S9P, archaeal ribosomal protein S9 1e-44
COG0103130 COG0103, RpsI, Ribosomal protein S9 [Translation, 2e-44
PRK00132130 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed 3e-19
CHL00079130 CHL00079, rps9, ribosomal protein S9 3e-10
>gnl|CDD|177799 PLN00210, PLN00210, 40S ribosomal protein S16; Provisional Back     alignment and domain information 
 Score =  282 bits (723), Expect = e-100
 Identities = 136/140 (97%), Positives = 139/140 (99%)

Query: 8   TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGV 67
           TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELV+PEILRFKAFEPILLLGRHRF GV
Sbjct: 2   TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQPEILRFKAFEPILLLGRHRFAGV 61

Query: 68  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 127
           DMRIRVKGGGHTSQIYAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRR
Sbjct: 62  DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILLRYDRTLLVADPRR 121

Query: 128 CEPKKFGGRGARARFQKSYR 147
           CEPKKFGGRGARARFQKSYR
Sbjct: 122 CEPKKFGGRGARARFQKSYR 141

Length = 141
>gnl|CDD|185437 PTZ00086, PTZ00086, 40S ribosomal protein S16; Provisional Back     alignment and domain information
>gnl|CDD|179041 PRK00474, rps9p, 30S ribosomal protein S9P; Reviewed Back     alignment and domain information
>gnl|CDD|201193 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16 Back     alignment and domain information
>gnl|CDD|132666 TIGR03627, arch_S9P, archaeal ribosomal protein S9P Back     alignment and domain information
>gnl|CDD|223181 COG0103, RpsI, Ribosomal protein S9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|178888 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed Back     alignment and domain information
>gnl|CDD|214357 CHL00079, rps9, ribosomal protein S9 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 147
PTZ00086147 40S ribosomal protein S16; Provisional 100.0
PLN00210141 40S ribosomal protein S16; Provisional 100.0
PRK00474134 rps9p 30S ribosomal protein S9P; Reviewed 100.0
TIGR03627130 arch_S9P archaeal ribosomal protein S9P. This mode 100.0
COG0103130 RpsI Ribosomal protein S9 [Translation, ribosomal 100.0
CHL00079130 rps9 ribosomal protein S9 100.0
PRK00132130 rpsI 30S ribosomal protein S9; Reviewed 100.0
PF00380121 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: 100.0
KOG1753145 consensus 40S ribosomal protein S16 [Translation, 100.0
KOG1697275 consensus Mitochondrial/chloroplast ribosomal prot 100.0
KOG0058716 consensus Peptide exporter, ABC superfamily [Intra 95.06
COG4988559 CydD ABC-type transport system involved in cytochr 94.29
COG2274709 SunT ABC-type bacteriocin/lantibiotic exporters, c 90.78
TIGR03797686 NHPM_micro_ABC2 NHPM bacteriocin system ABC transp 89.03
TIGR03796710 NHPM_micro_ABC1 NHPM bacteriocin system ABC transp 88.93
PTZ002651466 multidrug resistance protein (mdr1); Provisional 88.64
PRK10790592 putative multidrug transporter membrane\ATP-bindin 88.47
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 86.85
KOG0055 1228 consensus Multidrug/pheromone exporter, ABC superf 86.18
KOG00551228 consensus Multidrug/pheromone exporter, ABC superf 86.17
PLN03130 1622 ABC transporter C family member; Provisional 84.53
TIGR00958711 3a01208 Conjugate Transporter-2 (CT2) Family prote 84.37
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 83.47
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 81.84
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 81.8
PLN032321495 ABC transporter C family member; Provisional 80.98
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 80.91
>PTZ00086 40S ribosomal protein S16; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.7e-61  Score=368.91  Aligned_cols=147  Identities=65%  Similarity=1.120  Sum_probs=140.4

Q ss_pred             CCcCCCCCCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccc
Q 032125            1 MATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTS   80 (147)
Q Consensus         1 ~~~~~~~~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~g   80 (147)
                      |+.-..+.+.++++||||+|+|+|++.+|+|+|+|||+|+++||++.++++|++||.+++.+.+++|||+|+|+|||+||
T Consensus         1 ~~~~~~~~~~v~~~GrRKtAiArv~l~~G~G~i~INg~~l~~y~~~~~r~~i~~Pl~~~~~~~~~~~Di~i~V~GGG~sg   80 (147)
T PTZ00086          1 MAEKTTKLKQVQTFGKKKTAVAVALVTKGKGLIRVNGVPLDLINPETLRAKVFEPLLLVGKERFSRLDIRVRVRGGGQVA   80 (147)
T ss_pred             CCccccCCcceEEeeecCCceEEEEEEcCCceEEECCcCHHHhCcHHHHHHHHHHHHHhCcCccCceeEEEEEEcCCHHH
Confidence            44555678899999999999999999999999999999999999988999999999999875578999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125           81 QIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR  147 (147)
Q Consensus        81 Qa~Air~aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR  147 (147)
                      ||+||||||||||+.|++.|.|++.++.||+.|+.||+||||+|||+|||||||++||||+||||||
T Consensus        81 QA~Air~aIaRAL~~~~~~~~~~~~r~~Lk~~~~~ydrglLtrD~R~~ERKK~G~~kARk~~Q~SkR  147 (147)
T PTZ00086         81 QAYAIRQAIAKGLVAYYQKYVDEATKAELKDKLLAYDRSLLVADPRRCEPKKFGGPGARARFQKSYR  147 (147)
T ss_pred             HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhhccCCcccCCccccccCcCCCcccccccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998

>PLN00210 40S ribosomal protein S16; Provisional Back     alignment and domain information
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed Back     alignment and domain information
>TIGR03627 arch_S9P archaeal ribosomal protein S9P Back     alignment and domain information
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00079 rps9 ribosomal protein S9 Back     alignment and domain information
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed Back     alignment and domain information
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1753 consensus 40S ribosomal protein S16 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1697 consensus Mitochondrial/chloroplast ribosomal protein S9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query147
3iz6_I149 Localization Of The Small Subunit Ribosomal Protein 1e-65
2zkq_i146 Structure Of A Mammalian Ribosomal 40s Subunit With 1e-60
3izb_I143 Localization Of The Small Subunit Ribosomal Protein 4e-55
1s1h_I142 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 4e-55
3jyv_I138 Structure Of The 40s Rrna And Proteins And PE TRNA 5e-55
2xzm_I145 Crystal Structure Of The Eukaryotic 40s Ribosomal S 1e-49
3zey_K149 High-resolution Cryo-electron Microscopy Structure 3e-34
3j20_K135 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-28
1vs5_I130 Crystal Structure Of The Bacterial Ribosome From Es 5e-07
2gy9_I126 Structure Of The 30s Subunit Of A Pre-Translocation 5e-07
1p6g_I129 Real Space Refined Coordinates Of The 30s Subunit F 5e-07
3fih_I127 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 5e-07
1fjg_I128 Structure Of The Thermus Thermophilus 30s Ribosomal 1e-06
1pns_I127 Crystal Structure Of A Streptomycin Dependent Ribos 1e-06
2hgi_L128 Crystal Structure Of The 70s Thermus Thermophilus R 2e-06
>pdb|3IZ6|I Chain I, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 149 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (624), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 128/146 (87%)
Query: 2   ATAAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGR 61
           A   P   +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KAFEPILL GR
Sbjct: 4   ALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGR 63
Query: 62  HRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 121
            RF  +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTLL
Sbjct: 64  SRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLL 123
Query: 122 VADPRRCEPKKFGGRGARARFQKSYR 147
           VADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 124 VADPRRCEPKKFGGRGARARFQKSYR 149
>pdb|2ZKQ|II Chain i, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 146 Back     alignment and structure
>pdb|3IZB|I Chain I, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 143 Back     alignment and structure
>pdb|1S1H|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 142 Back     alignment and structure
>pdb|3JYV|I Chain I, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 138 Back     alignment and structure
>pdb|2XZM|I Chain I, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 145 Back     alignment and structure
>pdb|3ZEY|K Chain K, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 149 Back     alignment and structure
>pdb|3J20|K Chain K, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 135 Back     alignment and structure
>pdb|1VS5|I Chain I, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 130 Back     alignment and structure
>pdb|2GY9|I Chain I, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 126 Back     alignment and structure
>pdb|1P6G|I Chain I, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 129 Back     alignment and structure
>pdb|3FIH|I Chain I, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 127 Back     alignment and structure
>pdb|1FJG|I Chain I, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 128 Back     alignment and structure
>pdb|1PNS|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 127 Back     alignment and structure
>pdb|2HGI|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 2hgj. Length = 128 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query147
2xzm_I145 RPS16E; ribosome, translation; 3.93A {Tetrahymena 2e-66
3u5c_Q143 RP61R, 40S ribosomal protein S16-A; translation, r 2e-65
3iz6_I149 40S ribosomal protein S16 (S9P); eukaryotic riboso 5e-65
2zkq_i146 40S ribosomal protein S16E; protein-RNA complex, 4 4e-64
3r8n_I127 30S ribosomal protein S9; protein biosynthesis, RN 3e-20
3bbn_I197 Ribosomal protein S9; small ribosomal subunit, spi 3e-20
2vqe_I128 30S ribosomal protein S9, 30S ribosomal protein S6 4e-20
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 9e-04
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I Length = 145 Back     alignment and structure
 Score =  197 bits (503), Expect = 2e-66
 Identities = 86/144 (59%), Positives = 119/144 (82%)

Query: 4   AAPKTESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHR 63
           +  K + VQ FGRKK AVAV   + G+GL+K+NG PI+++ P+IL+ K +EPILLLG+ +
Sbjct: 2   SQQKPQLVQTFGRKKNAVAVASVRPGKGLLKVNGSPIDMINPQILQAKIYEPILLLGQQK 61

Query: 64  FNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 123
           F  +D+RIRV+G G+TSQ+YAIRQ+++K +VA++ KYVDE SK+EIK+ L++YDR+LLVA
Sbjct: 62  FANLDIRIRVRGSGYTSQVYAIRQALSKGIVAYHAKYVDENSKREIKEQLMQYDRSLLVA 121

Query: 124 DPRRCEPKKFGGRGARARFQKSYR 147
           DPRR EPKK GGRGAR++ QK+YR
Sbjct: 122 DPRRMEPKKCGGRGARSKMQKAYR 145
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I* Length = 143 Back     alignment and structure
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 149 Back     alignment and structure
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 146 Back     alignment and structure
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 197 Back     alignment and structure
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Length = 128 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query147
3u5c_Q143 RP61R, 40S ribosomal protein S16-A; translation, r 100.0
2xzm_I145 RPS16E; ribosome, translation; 3.93A {Tetrahymena 100.0
2zkq_i146 40S ribosomal protein S16E; protein-RNA complex, 4 100.0
3j20_K135 30S ribosomal protein S9P; archaea, archaeal, KINK 100.0
3iz6_I149 40S ribosomal protein S16 (S9P); eukaryotic riboso 100.0
2vqe_I128 30S ribosomal protein S9, 30S ribosomal protein S6 100.0
3r8n_I127 30S ribosomal protein S9; protein biosynthesis, RN 100.0
3bbn_I197 Ribosomal protein S9; small ribosomal subunit, spi 100.0
4f4c_A1321 Multidrug resistance protein PGP-1; ABC transporte 84.17
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I* Back     alignment and structure
Probab=100.00  E-value=3.9e-64  Score=384.58  Aligned_cols=140  Identities=68%  Similarity=1.108  Sum_probs=137.2

Q ss_pred             CCeEeEeeeccceEEEEEEEeCceeEEEcCeeccccCcHHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHH
Q 032125            8 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQ   87 (147)
Q Consensus         8 ~~~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~   87 (147)
                      .++++++||||||+|+|+|.||+|+|+|||+|+++||+++++++|++||.+++.+.+++|||+|+|+|||+||||+||||
T Consensus         4 ~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~   83 (143)
T 3u5c_Q            4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQ   83 (143)
T ss_dssp             CCEEEEEECSTTCEEEEEEEECSCCEEETTEETTTCSSCSTHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHHHH
T ss_pred             cceEEEeccCcceEEEEEEEeCceEEEECCCcHHHHChHHHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHHHH
Confidence            68899999999999999999999999999999999999889999999999999877899999999999999999999999


Q ss_pred             HHHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125           88 SIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR  147 (147)
Q Consensus        88 aiAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR  147 (147)
                      ||||||++|+++|+||+.++.||++|++||+||||+|||+|||||||++|||++||||||
T Consensus        84 aIArAL~~~~~~~vd~~~r~~LK~~l~~yD~glLtrD~R~~ErKK~G~~kARk~~Q~SkR  143 (143)
T 3u5c_Q           84 AIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR  143 (143)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSTTSCCCCCCCCCCSSSSSSSCCCCCCCC
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcCCCcccccCCCCCcccccccccccC
Confidence            999999999999999999999999999999999999999999999999999999999998
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I Back     alignment and structure
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Back     alignment and structure
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 147
d2gy9i1126 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherich 7e-35
d2vqei1127 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus t 1e-32
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Length = 126 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Escherichia coli [TaxId: 562]

 Score =  115 bits (290), Expect = 7e-35
 Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 15  GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVK 74
           GR+K++ A  + K G G I IN   +E               L L       +D+ I VK
Sbjct: 6   GRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELV-DMVEKLDLYITVK 64

Query: 75  GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 134
           GGG + Q  AIR  I +AL+ +     DE  + E++          +  D R+ E KK G
Sbjct: 65  GGGISGQAGAIRHGITRALMEY-----DESLRSELRK------AGFVTRDARQVERKKVG 113

Query: 135 GRGARARFQKSYR 147
            R AR R Q S R
Sbjct: 114 LRKARRRPQFSKR 126
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query147
d2gy9i1126 Ribosomal protein S9 {Escherichia coli [TaxId: 562 100.0
d2vqei1127 Ribosomal protein S9 {Thermus thermophilus [TaxId: 100.0
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-55  Score=330.05  Aligned_cols=125  Identities=36%  Similarity=0.475  Sum_probs=117.7

Q ss_pred             eEeEeeeccceEEEEEEEeCceeEEEcCeeccccCc-HHHHHHhhhhHHhhcccccceeceEEEEecCcccchHHHHHHH
Q 032125           10 SVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQS   88 (147)
Q Consensus        10 ~~~~~GrRKta~A~v~l~~G~G~i~INg~~l~~y~~-~~~r~~i~~PL~~~~~~~~~~~di~v~V~GGG~~gQa~Air~a   88 (147)
                      +++++||||||+|+|||.||+|+|+|||+|+++||+ ..+++.+++||.+++..  ++|||+|+|+|||+||||+|||||
T Consensus         1 q~y~tGrRKtaiArv~l~~G~G~I~IN~~~~~~yf~~~~~~~~~~~pl~~~~~~--~~~di~v~V~GGG~sgQa~Air~a   78 (126)
T d2gy9i1           1 QYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMV--EKLDLYITVKGGGISGQAGAIRHG   78 (126)
T ss_dssp             CEEECCEETTEEEEEEEEESSSCEEETTEEHHHHTTTCGGGGGGGHHHHHTTCG--GGEEEEEEEESSCHHHHHHHHHHH
T ss_pred             CcccccccccEEEEEEEEecCcEEEECchhHhhhcchHhHHHHHHhHHHhhccc--cceeEEEEEecCCchhHHHHHHHH
Confidence            468999999999999999999999999999999987 56788999999999865  899999999999999999999999


Q ss_pred             HHHHHHHhhhhcCChhhHHHHHHHhhhcCCCceeccCCCcccCCCCccccccCcccccC
Q 032125           89 IAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR  147 (147)
Q Consensus        89 iAraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLt~D~R~~ERKK~G~~kARk~~Q~SkR  147 (147)
                      |||||+.|     +|+.++.||+.      ||||+|||+|||||||++||||+||||||
T Consensus        79 IaRaLv~~-----~~~~r~~lk~~------glLt~D~R~~ErKK~G~~kARk~~Q~skR  126 (126)
T d2gy9i1          79 ITRALMEY-----DESLRSELRKA------GFVTRDARQVERKKVGLRKARRRPQFSKR  126 (126)
T ss_dssp             HHHHHHHH-----CGGGHHHHTTT------TTTSCCCCCCCCCCSSSSSSSSCCCCSCC
T ss_pred             HHHHHHHh-----CHHHHHHHHHC------cCcccCccccccCCCCCcccccCccccCC
Confidence            99999998     66778888876      99999999999999999999999999998
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure