Citrus Sinensis ID: 032158

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN
ccccccccccccccccccHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEccccccHHHHHHccccccccEEEEEEEEEcccccEEcEEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHc
cccccccccccccccEEcHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccccHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccHcHHHHHHHHH
msfrglsrpnatsgmgvadhsKNAFTELQRKKVHRYVIFKIDEKKKEVVVEktggpaesyeDFAAalpendcryavydfdyvtsencqkskiFFIAWSPSTSRIRAKMLYATSKDRFRRELDgihyeiqatdptemDLEELRNRAN
msfrglsrpnatsgmgvadhsknaftelqrkkvhryvifkidekkkevvVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIffiawspstsriRAKMLYAtskdrfrreldgihyeiqatdptemdleELRNRAN
MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDekkkevvvekTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN
*************************TELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEI******************
**************MGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA*
MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD*********
*************GMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query146 2.2.26 [Sep-21-2011]
Q9ZSK2146 Actin-depolymerizing fact yes no 1.0 1.0 0.821 2e-68
Q8SAG3143 Actin-depolymerizing fact yes no 0.979 1.0 0.876 1e-65
Q2QLT8145 Actin-depolymerizing fact yes no 0.958 0.965 0.757 1e-60
Q9AY76145 Actin-depolymerizing fact no no 0.958 0.965 0.75 2e-58
Q9FVI2139 Actin-depolymerizing fact N/A no 0.938 0.985 0.671 5e-54
Q337A5151 Actin-depolymerizing fact no no 1.0 0.966 0.623 1e-52
Q39250139 Actin-depolymerizing fact no no 0.938 0.985 0.642 1e-52
Q9ZSK3139 Actin-depolymerizing fact no no 0.938 0.985 0.635 3e-52
Q9FVI1143 Actin-depolymerizing fact N/A no 0.938 0.958 0.656 2e-50
Q9LQ81140 Actin-depolymerizing fact no no 0.938 0.978 0.613 8e-50
>sp|Q9ZSK2|ADF6_ARATH Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1 Back     alignment and function desciption
 Score =  257 bits (657), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 129/146 (88%)

Query: 1   MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESY 60
           MSFRGLSRPNA SGMGVAD SK  F ELQRKK HRYV+FKIDE KKEVVVEKTG P ESY
Sbjct: 1   MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query: 61  EDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120
           +DF A+LP+NDCRYAVYDFD+VTSENCQKSKIFF AWSPSTS IRAK+LY+TSKD+  RE
Sbjct: 61  DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRE 120

Query: 121 LDGIHYEIQATDPTEMDLEELRNRAN 146
           L GIHYEIQATDPTE+DLE LR RAN
Sbjct: 121 LQGIHYEIQATDPTEVDLEVLRERAN 146
Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8SAG3|ADF_VITVI Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1 Back     alignment and function description
>sp|Q2QLT8|ADF11_ORYSJ Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1 Back     alignment and function description
>sp|Q9AY76|ADF2_ORYSJ Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q337A5|ADF10_ORYSJ Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1 Back     alignment and function description
>sp|Q39250|ADF1_ARATH Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZSK3|ADF4_ARATH Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2 Back     alignment and function description
>sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQ81|ADF10_ARATH Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
358248624146 uncharacterized protein LOC100819975 [Gl 1.0 1.0 0.890 2e-74
351723549146 uncharacterized protein LOC100527688 [Gl 1.0 1.0 0.876 3e-73
388513699146 unknown [Medicago truncatula] 1.0 1.0 0.856 2e-71
388493718146 unknown [Lotus japonicus] 1.0 1.0 0.849 2e-71
388492192146 unknown [Lotus japonicus] 1.0 1.0 0.849 2e-71
297822855146 hypothetical protein ARALYDRAFT_902145 [ 1.0 1.0 0.856 2e-70
284433764146 actin-depolymerizing factor 6 [Jatropha 1.0 1.0 0.931 5e-70
224062149146 predicted protein [Populus trichocarpa] 1.0 1.0 0.931 2e-69
255567278146 actin depolymerizing factor, putative [R 1.0 1.0 0.917 3e-69
197312883143 actin depolymerizing factor [Rheum austr 0.979 1.0 0.849 3e-67
>gi|358248624|ref|NP_001239657.1| uncharacterized protein LOC100819975 [Glycine max] gi|255638235|gb|ACU19431.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/146 (89%), Positives = 143/146 (97%)

Query: 1   MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESY 60
           MSFRGLSRPNATSGMGVADHSKN F EL++KKVHRYVIFK+DEKK+EVVVEKTGGPAESY
Sbjct: 1   MSFRGLSRPNATSGMGVADHSKNTFMELKQKKVHRYVIFKVDEKKREVVVEKTGGPAESY 60

Query: 61  EDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120
           +DFAA+LPENDCRYAV+D+D+VTSENCQKSKIFFIAWSPSTSRIRAKMLYAT+KDRFRRE
Sbjct: 61  DDFAASLPENDCRYAVFDYDFVTSENCQKSKIFFIAWSPSTSRIRAKMLYATTKDRFRRE 120

Query: 121 LDGIHYEIQATDPTEMDLEELRNRAN 146
           LDG+HYEIQATDPTEMDLE LR+RA+
Sbjct: 121 LDGVHYEIQATDPTEMDLEVLRDRAH 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351723549|ref|NP_001236003.1| uncharacterized protein LOC100527688 [Glycine max] gi|255632956|gb|ACU16832.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388513699|gb|AFK44911.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388493718|gb|AFK34925.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388492192|gb|AFK34162.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297822855|ref|XP_002879310.1| hypothetical protein ARALYDRAFT_902145 [Arabidopsis lyrata subsp. lyrata] gi|297325149|gb|EFH55569.1| hypothetical protein ARALYDRAFT_902145 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|284433764|gb|ADB85088.1| actin-depolymerizing factor 6 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224062149|ref|XP_002300779.1| predicted protein [Populus trichocarpa] gi|118482922|gb|ABK93374.1| unknown [Populus trichocarpa] gi|118484750|gb|ABK94244.1| unknown [Populus trichocarpa] gi|222842505|gb|EEE80052.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255567278|ref|XP_002524620.1| actin depolymerizing factor, putative [Ricinus communis] gi|223536173|gb|EEF37828.1| actin depolymerizing factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|197312883|gb|ACH63222.1| actin depolymerizing factor [Rheum australe] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
TAIR|locus:2042546146 ADF6 "actin depolymerizing fac 1.0 1.0 0.760 7.5e-57
TAIR|locus:2077122150 ADF1 "actin depolymerizing fac 0.986 0.96 0.579 3.5e-43
TAIR|locus:2168063139 ADF4 "actin depolymerizing fac 0.938 0.985 0.583 1.9e-42
TAIR|locus:2198175140 ADF11 "actin depolymerizing fa 0.938 0.978 0.583 3.2e-42
TAIR|locus:2131556141 ADF9 "actin depolymerizing fac 0.924 0.957 0.585 2.2e-41
TAIR|locus:2127073140 ADF8 "actin depolymerizing fac 0.938 0.978 0.554 3.6e-41
TAIR|locus:2131879137 ADF7 "actin depolymerizing fac 0.917 0.978 0.580 2.6e-40
TAIR|locus:2059861143 ADF5 "actin depolymerizing fac 0.924 0.944 0.577 4.2e-40
TAIR|locus:2077107137 ADF2 "actin depolymerizing fac 0.924 0.985 0.576 5.3e-40
TAIR|locus:2168052139 ADF3 "actin depolymerizing fac 0.938 0.985 0.547 1.1e-39
TAIR|locus:2042546 ADF6 "actin depolymerizing factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 111/146 (76%), Positives = 120/146 (82%)

Query:     1 MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESY 60
             MSFRGLSRPNA SGMGVAD SK  F ELQRKK HRYV+FKID          TG P ESY
Sbjct:     1 MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query:    61 EDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRE 120
             +DF A+LP+NDCRYAVYDFD+VTSENCQKSKIFF AWSPSTS IRAK+LY+TSKD+  RE
Sbjct:    61 DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRE 120

Query:   121 LDGIHYEIQATDPTEMDLEELRNRAN 146
             L GIHYEIQATDPTE+DLE LR RAN
Sbjct:   121 LQGIHYEIQATDPTEVDLEVLRERAN 146
GO:0003779 "actin binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2077122 ADF1 "actin depolymerizing factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168063 ADF4 "actin depolymerizing factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198175 ADF11 "actin depolymerizing factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131556 ADF9 "actin depolymerizing factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127073 ADF8 "actin depolymerizing factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131879 ADF7 "actin depolymerizing factor 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059861 ADF5 "actin depolymerizing factor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077107 ADF2 "actin depolymerizing factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168052 ADF3 "actin depolymerizing factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CM06COFI_CRYNJNo assigned EC number0.39700.91780.9710yesno
Q41764ADF3_MAIZENo assigned EC number0.53670.93150.9784N/Ano
Q9FVI2ADF1_PETHYNo assigned EC number0.67150.93830.9856N/Ano
Q9FVI1ADF2_PETHYNo assigned EC number0.65690.93830.9580N/Ano
Q2QLT8ADF11_ORYSJNo assigned EC number0.75710.95890.9655yesno
P0DJ27COFB_DICDINo assigned EC number0.3920.84930.9051yesno
P46251ADF1_MAIZENo assigned EC number0.56200.93830.9856N/Ano
Q6C0Y0COFI_YARLINo assigned EC number0.47400.91090.8692yesno
Q9HF97COFI_ZYGRONo assigned EC number0.43700.91090.9300yesno
Q8SAG3ADF_VITVINo assigned EC number0.87670.97941.0yesno
Q03048COFI_YEASTNo assigned EC number0.41480.91090.9300yesno
Q9ZSK2ADF6_ARATHNo assigned EC number0.82191.01.0yesno
Q9AY76ADF2_ORYSJNo assigned EC number0.750.95890.9655nono
Q759P0COFI_ASHGONo assigned EC number0.41480.91090.9300yesno
P30175ADF_LILLONo assigned EC number0.61020.93150.9784N/Ano
P45594CADF_DROMENo assigned EC number0.35710.89720.8851yesno
P0DJ26COFA_DICDINo assigned EC number0.3920.84930.9051yesno
Q4I963COFI_GIBZENo assigned EC number0.34040.87670.8366yesno
P78929COFI_SCHPONo assigned EC number0.42530.90410.9635yesno
Q6BWX4COFI_DEBHANo assigned EC number0.42220.91090.9300yesno
Q43694ADF2_MAIZENo assigned EC number0.54740.93830.9856N/Ano
Q6CQ22COFI_KLULANo assigned EC number0.43840.87670.8951yesno
Q6FV81COFI_CANGANo assigned EC number0.44440.91090.9300yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_401646.1
annotation not avaliable (146 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
PLN03216141 PLN03216, PLN03216, actin depolymerizing factor; P 5e-72
cd11286133 cd11286, ADF_cofilin_like, Cofilin, Destrin, and r 3e-66
smart00102127 smart00102, ADF, Actin depolymerisation factor/cof 1e-54
pfam00241127 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type a 5e-50
cd0001397 cd00013, ADF_gelsolin, Actin depolymerization fact 3e-24
PTZ00152122 PTZ00152, PTZ00152, cofilin/actin-depolymerizing f 1e-16
cd11284132 cd11284, ADF_Twf-C_like, C-terminal ADF domain of 3e-15
cd11283122 cd11283, ADF_GMF-beta_like, ADF-homology domain of 2e-14
cd11285139 cd11285, ADF_Twf-N_like, N-terminal ADF domain of 1e-11
>gnl|CDD|178755 PLN03216, PLN03216, actin depolymerizing factor; Provisional Back     alignment and domain information 
 Score =  212 bits (540), Expect = 5e-72
 Identities = 93/135 (68%), Positives = 114/135 (84%)

Query: 11  ATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPEN 70
           AT+GM V D  KN+F E++ KKVHRY++FKIDEK ++V V+K GGP ESY+D AA+LP +
Sbjct: 6   ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTD 65

Query: 71  DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 130
           DCRYAV+DFD+VT +NC+KSKIFFIAWSP  SRIRAKMLYATSKD  RR LDG+HYE+QA
Sbjct: 66  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQA 125

Query: 131 TDPTEMDLEELRNRA 145
           TDPTEM  + +R+RA
Sbjct: 126 TDPTEMGFDVIRDRA 140

Length = 141
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin depolymerizing factors Back     alignment and domain information
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding protein Back     alignment and domain information
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and gelsolin-like domains Back     alignment and domain information
>gnl|CDD|173441 PTZ00152, PTZ00152, cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|200439 cd11283, ADF_GMF-beta_like, ADF-homology domain of glia maturation factor beta and related proteins Back     alignment and domain information
>gnl|CDD|200441 cd11285, ADF_Twf-N_like, N-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 146
PLN03216141 actin depolymerizing factor; Provisional 100.0
cd00013132 ADF Actin depolymerisation factor/cofilin -like do 100.0
KOG1735146 consensus Actin depolymerizing factor [Cytoskeleto 100.0
PF00241127 Cofilin_ADF: Cofilin/tropomyosin-type actin-bindin 100.0
smart00102127 ADF Actin depolymerisation factor/cofilin -like do 100.0
PTZ00152122 cofilin/actin-depolymerizing factor 1-like protein 100.0
KOG1736143 consensus Glia maturation factor beta [Extracellul 99.94
KOG1747342 consensus Protein tyrosine kinase 9/actin monomer- 99.93
KOG1747 342 consensus Protein tyrosine kinase 9/actin monomer- 99.91
KOG3655 484 consensus Drebrins and related actin binding prote 99.8
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 80.04
>PLN03216 actin depolymerizing factor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-45  Score=263.78  Aligned_cols=136  Identities=68%  Similarity=1.162  Sum_probs=128.8

Q ss_pred             ccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCcee
Q 032158           10 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQK   89 (146)
Q Consensus        10 ~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~   89 (146)
                      |++|||+++++|.++|++|+.++.+|||+|+|+.++++|+|++++..+.+|+||++.||+++|||++|||++++.+|+++
T Consensus         5 m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~   84 (141)
T PLN03216          5 MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRK   84 (141)
T ss_pred             ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcc
Confidence            55889999999999999999887789999999998889999987655678999999999999999999999998899999


Q ss_pred             ecEEEEEEcCCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032158           90 SKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA  145 (146)
Q Consensus        90 ~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~  145 (146)
                      ++++||+|||++|++|.||+|||+|.+|++.|+|++++|||+|.+||+++.+.++|
T Consensus        85 ~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~  140 (141)
T PLN03216         85 SKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA  140 (141)
T ss_pred             cCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999987

>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments Back     alignment and domain information
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton] Back     alignment and domain information
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma Back     alignment and domain information
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>KOG1736 consensus Glia maturation factor beta [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton] Back     alignment and domain information
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
1f7s_A139 Crystal Structure Of Adf1 From Arabidopsis Thaliana 4e-48
1ahq_A137 Recombinant Actophorin Length = 137 1e-27
1cnu_A137 Phosphorylated Actophorin From Acantamoeba Polyphag 3e-27
1cfy_A143 Yeast Cofilin, Monoclinic Crystal Form Length = 143 1e-24
2i2q_A137 Fission Yeast Cofilin Length = 137 1e-21
1q8g_A166 Nmr Structure Of Human Cofilin Length = 166 1e-14
2l72_A139 Solution Structure And Dynamics Of Adf From Toxopla 1e-14
1ak6_A174 Destrin, Nmr, Minimized Average Structure Length = 1e-14
1tvj_A166 Solution Structure Of Chick Cofilin Length = 166 2e-13
2lj8_A144 Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA B 3e-13
2xfa_A148 Crystal Structure Of Plasmodium Berghei Actin Depol 1e-12
2kvk_A144 Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISH 4e-10
1m4j_A142 Crystal Structure Of The N-Terminal Adf-H Domain Of 2e-07
2vac_A134 Structure Of N-Terminal Actin Depolymerizing Factor 7e-07
3q2b_A124 Crystal Structure Of An Actin Depolymerizing Factor 2e-04
1wfs_A151 Solution Structure Of Glia Maturation Factor-Gamma 2e-04
1vkk_A154 Crystal Structure Of Glia Maturation Factor-Gamma ( 3e-04
3l50_A136 The Crystal Structure Of Human Glia Maturation Fact 3e-04
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana Length = 139 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (472), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 105/137 (76%)
Query: 10  NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPE 69
           NA SGM V D  K  F EL+ K+ HR++++KI+           G P ++YE+FAA LP 
Sbjct: 3   NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPA 62
Query: 70  NDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 129
           ++CRYA+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+Q
Sbjct: 63  DECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQ 122
Query: 130 ATDPTEMDLEELRNRAN 146
           ATDPTEMDL+  R+RAN
Sbjct: 123 ATDPTEMDLDVFRSRAN 139
>pdb|1AHQ|A Chain A, Recombinant Actophorin Length = 137 Back     alignment and structure
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga Length = 137 Back     alignment and structure
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form Length = 143 Back     alignment and structure
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin Length = 137 Back     alignment and structure
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin Length = 166 Back     alignment and structure
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma Gondii (Tgadf) Length = 139 Back     alignment and structure
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure Length = 174 Back     alignment and structure
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin Length = 166 Back     alignment and structure
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI Length = 144 Back     alignment and structure
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin Depolymerization Factor 2 Length = 148 Back     alignment and structure
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA DONOVANI Length = 144 Back     alignment and structure
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse Twinfilin Isoform-1 Length = 142 Back     alignment and structure
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain Of Human Twinfilin-2 Length = 134 Back     alignment and structure
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor Length = 124 Back     alignment and structure
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From Mus Musculus Length = 151 Back     alignment and structure
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg) From Mus Musculus At 1.50 A Resolution Length = 154 Back     alignment and structure
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor, Gamma (Gmfg) Length = 136 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 4e-54
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 1e-49
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 7e-47
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 1e-46
2xfa_A148 Actin depolymerization factor 2; actin binding pro 2e-46
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 2e-45
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 2e-41
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 3e-41
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 2e-40
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 3e-39
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 4e-38
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 7e-38
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 8e-38
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 2e-37
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 2e-37
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 7e-37
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 1e-35
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 1e-26
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 6e-26
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 2e-18
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Length = 139 Back     alignment and structure
 Score =  166 bits (421), Expect = 4e-54
 Identities = 88/137 (64%), Positives = 115/137 (83%)

Query: 10  NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPE 69
           NA SGM V D  K  F EL+ K+ HR++++KI+EK+K+VVVEK G P ++YE+FAA LP 
Sbjct: 3   NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPA 62

Query: 70  NDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 129
           ++CRYA+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+Q
Sbjct: 63  DECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQ 122

Query: 130 ATDPTEMDLEELRNRAN 146
           ATDPTEMDL+  R+RAN
Sbjct: 123 ATDPTEMDLDVFRSRAN 139
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Length = 137 Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Length = 137 Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Length = 148 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Length = 143 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Length = 174 Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Length = 124 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Length = 166 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Length = 139 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Length = 134 Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Length = 154 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Length = 164 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Length = 142 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Length = 151 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Length = 135 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Length = 166 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Length = 141 Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 100.0
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 100.0
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 100.0
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 100.0
2kvk_A144 Actin severing and dynamics regulatory protein; AD 100.0
2xfa_A148 Actin depolymerization factor 2; actin binding pro 100.0
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 100.0
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 100.0
2lj8_A144 Cofilin/actin depolymerizing factor, putative; pro 100.0
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 100.0
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 100.0
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 100.0
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 100.0
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 100.0
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 100.0
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 100.0
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 100.0
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 100.0
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 100.0
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 100.0
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 100.0
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 100.0
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Back     alignment and structure
Probab=100.00  E-value=1.6e-45  Score=261.52  Aligned_cols=139  Identities=63%  Similarity=1.116  Sum_probs=119.0

Q ss_pred             CcccccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCc
Q 032158            8 RPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENC   87 (146)
Q Consensus         8 ~~~~~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~   87 (146)
                      |+|++|||.+++||.++|++++.++.+|||+|+|+.++++|+|+++|++..+|++|.+.||+++|||++||+++++.+|+
T Consensus         1 ~~~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~   80 (139)
T 1f7s_A            1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENC   80 (139)
T ss_dssp             ----CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSC
T ss_pred             CCcCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccC
Confidence            67889999999999999999998767999999999988899999988655699999999999999999999999999999


Q ss_pred             eeecEEEEEEcCCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032158           88 QKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRAN  146 (146)
Q Consensus        88 ~~~k~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~dl~~~~i~~k~~  146 (146)
                      +++|++||+|||++||+|+||+||++|.+|++.|+|++++|||+|++||+++.|.+|++
T Consensus        81 ~~~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~  139 (139)
T 1f7s_A           81 QKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN  139 (139)
T ss_dssp             EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred             cccCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999875
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Back     alignment and structure
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Back     alignment and structure
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani} Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Back     alignment and structure
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei} Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 146
d1f7sa_124 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 4e-54
d1cnua_134 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 2e-49
d1ak7a_174 d.109.1.2 (A:) Destrin {Human and pig (Homo sapien 6e-46
d1cfya_133 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 1e-45
d1vkka_137 d.109.1.2 (A:) Glia maturation factor gamma, GMF-g 3e-42
d1q8ga_166 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 2e-40
d1m4ja_133 d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 2e-36
d1t3ya1130 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 ( 1e-30
d1hqz1_139 d.109.1.2 (1:) Cofilin-like domain of actin-bindin 7e-28
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

 Score =  164 bits (417), Expect = 4e-54
 Identities = 79/123 (64%), Positives = 104/123 (84%)

Query: 13  SGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDC 72
           SGM V D  K  F EL+ K+ HR++++KI+EK+K+VVVEK G P ++YE+FAA LP ++C
Sbjct: 2   SGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADEC 61

Query: 73  RYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATD 132
           RYA+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATD
Sbjct: 62  RYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATD 121

Query: 133 PTE 135
           PTE
Sbjct: 122 PTE 124
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Length = 134 Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 133 Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
d1f7sa_124 Cofilin (actin depolymerizing factor, ADF) {Plant 100.0
d1cnua_134 Cofilin (actin depolymerizing factor, ADF) {Acanth 100.0
d1cfya_133 Cofilin (actin depolymerizing factor, ADF) {Baker' 100.0
d1ak7a_174 Destrin {Human and pig (Homo sapiens) and (Sus scr 100.0
d1vkka_137 Glia maturation factor gamma, GMF-gamma {Mouse (Mu 100.0
d1q8ga_166 Cofilin (actin depolymerizing factor, ADF) {Human 100.0
d1m4ja_133 Adf-H domain of twinfilin isoform-1 {Mouse (Mus mu 100.0
d1t3ya1130 Coactosin-like protein Cotl1 (Clp) {Human (Homo sa 100.0
d1hqz1_139 Cofilin-like domain of actin-binding protein abp1p 100.0
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

Probab=100.00  E-value=1.8e-42  Score=239.88  Aligned_cols=124  Identities=64%  Similarity=1.152  Sum_probs=119.0

Q ss_pred             ccCcccCHHHHHHHHHHHhcCcceEEEEEEeCCccEEEEeeCCCCCCCHHHHHhcCCCCCceEEEEEeeeecCCCceeec
Q 032158           12 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSK   91 (146)
Q Consensus        12 ~sGi~vs~e~~~a~~~l~~~~~~~~vi~~i~~~~~~i~l~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k   91 (146)
                      +|||+++|||.++|++|+.++.+||++|+|+.++++|+++.++++..+|++|++.||+++|||++|++.+.+.+|+.+++
T Consensus         1 aSGi~v~de~~~~f~~lk~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~~~~~~l~~~~~ry~~~~~~~~~~~~~~~~k   80 (124)
T d1f7sa_           1 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSK   80 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEEEE
T ss_pred             CCCeEeCHHHHHHHHHHhcCCCceEEEEEEeCCCcEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEEEEecCCCCcccc
Confidence            58999999999999999988889999999999989999999887778999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCChhhhhHhHHhHHHHHHhcCCeeEEEEeCCcCC
Q 032158           92 IFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTE  135 (146)
Q Consensus        92 ~vfI~w~P~~a~vk~kMlYsssk~~l~~~l~g~~~~i~a~d~~d  135 (146)
                      ++||+|||++||+|.||+|||+|.+|++.|+|++++|||+|++|
T Consensus        81 ~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~gi~~~i~a~d~~E  124 (124)
T d1f7sa_          81 IFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE  124 (124)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC
T ss_pred             EEEEEECCCCCCHhHeeeeHhHHHHHHHHhcCccEEEEeCCCCC
Confidence            99999999999999999999999999999999999999999987
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure