Citrus Sinensis ID: 032159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccEEEEccccccccEEEEEEEccccccccccccEEEEEEEccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHccccccEEEEccccccEEEEEEEEEEEEccccccEccEEEEEEEccccccccccEEEEccccccccEccccEEccHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHcc
Coil and Loop (DISEMBL)
msgggiargrLTEERKAwrknhphgfvakpetkdgsvnLMIWECiipgktgtdweggyfpltlyfsedypskppkckfpqgffhpnvypsgtVCLSIlnedngwrpaiTVKQILVGIQDlldqpnpadpaqtdgyQLFIQVLYWFI
Flexible Loop (DISEMBL)
msgggiargrlteerkawrknhphgfvakpetkdgsvnLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI
Low Complexity Region (SEG)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI
Disordered region (IsUnstruct)
**********************************GSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ*******QTDGYQLFIQVLYWF*
Disordered Region (DISOPRED)
******A***LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI
Disordered Region (DISEMBL)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI
Disordered Region (DISPRO)
*****IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLY**I
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q42551	160	SUMO-conjugating enzyme S	yes	no	0.945	0.862	0.870	6e-69
Q9NGP4	159	Sumo-conjugating enzyme u	yes	no	0.931	0.855	0.642	7e-51
Q9W6H5	158	SUMO-conjugating enzyme U	yes	no	0.938	0.867	0.659	8e-50
Q28CQ4	158	SUMO-conjugating enzyme U	yes	no	0.938	0.867	0.659	8e-50
P63282	158	SUMO-conjugating enzyme U	N/A	no	0.938	0.867	0.659	8e-50
Q2EF73	158	SUMO-conjugating enzyme U	N/A	no	0.938	0.867	0.659	8e-50
P63281	158	SUMO-conjugating enzyme U	yes	no	0.938	0.867	0.659	8e-50
P63280	158	SUMO-conjugating enzyme U	yes	no	0.938	0.867	0.659	8e-50
P63279	158	SUMO-conjugating enzyme U	yes	no	0.938	0.867	0.659	8e-50
P63283	158	SUMO-conjugating enzyme U	yes	no	0.938	0.867	0.659	8e-50

>sp|Q42551|SCE1_ARATH SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1

 Score =  259 bits (661), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 121/139 (87%), Positives = 128/139 (92%), Gaps = 1/139 (0%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
             GIARGRL EERK+WRKNHPHGFVAKPET +DG+VNLM+W C IPGK GTDWEGG+FPL
Sbjct: 2   ASGIARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPL 61

Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
           T++FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED GWRPAITVKQILVGIQDLL
Sbjct: 62  TMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDLL 121

Query: 122 DQPNPADPAQTDGYQLFIQ 140
           D PNPADPAQTDGY LF Q
Sbjct: 122 DTPNPADPAQTDGYHLFCQ 140

SUMO-conjugating enzyme that accepts the SUMO proteins from the E1 SUMO-activating heterodimer SAE1/SAE2 and catalyzes its covalent attachment to other proteins with the E3 SUMO ligases SIZ1 and MMS21. Associates with SIZ1 for sumoylation of the transcription factor GTE3.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9NGP4|UBC9_DICDI Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1

 Score =  199 bits (505), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 110/137 (80%), Gaps = 1/137 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GI+  RL+EERK WR++HP+GF A+P T  DGS+NL +W C IPGKT T+WEGG +PL 
Sbjct: 2   AGISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLI 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F+EDYPSKPPKC+FP+ FFHPNVYPSGTVCLSILNE+  W+P++T+K +L+GIQDLLD
Sbjct: 62  MEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLD 121

Query: 123 QPNPADPAQTDGYQLFI 139
            PNP  PAQ     LF+
Sbjct: 122 NPNPKSPAQQLPIHLFL 138

Accepts the ubiquitin-like protein sumo from the E1 complex and catalyzes its covalent attachment to other proteins with the help of an E3 ligase.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9W6H5|UBC9A_DANRE SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation (By similarity). Mediates nuclear localization of vsx1. Required for progression through mitosis during organogenesis.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q28CQ4|UBC9_XENTR SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63282|UBC9_XENLA SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q2EF73|UBC9_SPETR SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5.

Spermophilus tridecemlineatus (taxid: 43179)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63281|UBC9_RAT SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63280|UBC9_MOUSE SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture, chromosome segregation and embryonic viability. Necessary for sumoylation of FOXL2 and KAT5.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63279|UBC9_HUMAN SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

Accepts the ubiquitin-like proteins SUMO1, SUMO2, SUMO3 and SUMO4 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Necessary for sumoylation of FOXL2 and KAT5. Essential for nuclear architecture and chromosome segregation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63283|UBC9_CHICK SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Essential for nuclear architecture and chromosome segregation.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
326508977	161	predicted protein [Hordeum vulgare subsp	0.958	0.869	0.921	2e-71
357147197	161	PREDICTED: SUMO-conjugating enzyme SCE1-	0.958	0.869	0.921	3e-71
449484112	272	PREDICTED: SUMO-conjugating enzyme SCE1-	0.958	0.514	0.893	5e-71
147790674	160	hypothetical protein VITISV_001138 [Viti	0.938	0.856	0.934	1e-70
351726411	160	uncharacterized protein LOC100500268 [Gl	0.938	0.856	0.920	4e-70
225458690	160	PREDICTED: SUMO-conjugating enzyme SCE1	0.938	0.856	0.927	5e-70
217071238	159	unknown [Medicago truncatula] gi|3885228	0.938	0.861	0.920	5e-70
115450403	160	Os03g0123100 [Oryza sativa Japonica Grou	0.938	0.856	0.927	6e-70
110628146	161	putative E2 SUMO conjugating enzyme [Tri	0.958	0.869	0.900	7e-70
242042439	160	hypothetical protein SORBIDRAFT_01g04901	0.938	0.856	0.927	7e-70

>gi|326508977|dbj|BAJ86881.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/141 (92%), Positives = 133/141 (94%), Gaps = 1/141 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLMIW C IPGK GTDWE GY+
Sbjct: 1   MSGGGIARGRLAEERKAWRKNHPHGFVAKPETMADGSVNLMIWNCTIPGKQGTDWESGYY 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           PLTL+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQD
Sbjct: 61  PLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQD 120

Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
           LLDQPNPADPAQTDGY LFIQ
Sbjct: 121 LLDQPNPADPAQTDGYHLFIQ 141

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147197|ref|XP_003574257.1| PREDICTED: SUMO-conjugating enzyme SCE1-like isoform 1 [Brachypodium distachyon]

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/141 (92%), Positives = 132/141 (93%), Gaps = 1/141 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYF
Sbjct: 1   MSGGGIARGRLAEERKAWRKNHPHGFVAKPETVADGSVNLMVWHCTIPGKQGTDWEGGYF 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           PLTL FSEDYPSKPPKCKFPQ FFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQD
Sbjct: 61  PLTLQFSEDYPSKPPKCKFPQNFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQD 120

Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
           LLDQPNPADPAQTDGY LFIQ
Sbjct: 121 LLDQPNPADPAQTDGYHLFIQ 141

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484112|ref|XP_004156788.1| PREDICTED: SUMO-conjugating enzyme SCE1-like [Cucumis sativus]

 Score =  271 bits (694), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/141 (89%), Positives = 133/141 (94%), Gaps = 1/141 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERK+WRKNHPHGFVAKPET  DG+VNLMIW CIIPGK GTDWEGG+FPLT
Sbjct: 3   GGIARGRLAEERKSWRKNHPHGFVAKPETMPDGTVNLMIWHCIIPGKVGTDWEGGFFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L FSEDYPSKPPKC+FPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LNFSEDYPSKPPKCRFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQVLY 143
           QPNPADPAQT+GY LFIQV +
Sbjct: 123 QPNPADPAQTEGYHLFIQVCH 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790674|emb|CAN61018.1| hypothetical protein VITISV_001138 [Vitis vinifera]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/138 (93%), Positives = 132/138 (95%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETGPDGSVNLMVWHCTIPGKAGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQ 140
           QPNPADPAQTDGYQLFIQ
Sbjct: 123 QPNPADPAQTDGYQLFIQ 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726411|ref|NP_001235590.1| uncharacterized protein LOC100500268 [Glycine max] gi|356511865|ref|XP_003524642.1| PREDICTED: SUMO-conjugating enzyme SCE1-like [Glycine max] gi|255629881|gb|ACU15291.1| unknown [Glycine max]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/138 (92%), Positives = 133/138 (96%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRLTEERK+WRKNHPHGFVAKPET  DG+VNLM+W C IPGKTGTDWEGGYFPLT
Sbjct: 3   GGIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHCTIPGKTGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQ 140
           QPNPADPAQT+GY LFIQ
Sbjct: 123 QPNPADPAQTEGYHLFIQ 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458690|ref|XP_002284949.1| PREDICTED: SUMO-conjugating enzyme SCE1 [Vitis vinifera] gi|302142282|emb|CBI19485.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (685), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 128/138 (92%), Positives = 131/138 (94%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETGPDGSVNLMVWHCTIPGKAGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQ 140
           QPN ADPAQTDGYQLFIQ
Sbjct: 123 QPNAADPAQTDGYQLFIQ 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071238|gb|ACJ83979.1| unknown [Medicago truncatula] gi|388522891|gb|AFK49507.1| unknown [Medicago truncatula]

 Score =  268 bits (685), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 127/138 (92%), Positives = 131/138 (94%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIARGRLTEERK+WRKNHPHGFVAKPET  DGSVNLMIW C IPGK GTDWEGGYFPLT
Sbjct: 2   SGIARGRLTEERKSWRKNHPHGFVAKPETAADGSVNLMIWHCTIPGKAGTDWEGGYFPLT 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 62  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 121

Query: 123 QPNPADPAQTDGYQLFIQ 140
           QPNPADPAQT+GY LFIQ
Sbjct: 122 QPNPADPAQTEGYHLFIQ 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115450403|ref|NP_001048802.1| Os03g0123100 [Oryza sativa Japonica Group] gi|25446690|gb|AAN74837.1| Putative ubiquitin-conjugating enzyme [Oryza sativa Japonica Group] gi|108705922|gb|ABF93717.1| Ubiquitin-conjugating enzyme E2 I, putative, expressed [Oryza sativa Japonica Group] gi|113547273|dbj|BAF10716.1| Os03g0123100 [Oryza sativa Japonica Group] gi|125542190|gb|EAY88329.1| hypothetical protein OsI_09788 [Oryza sativa Indica Group] gi|125584745|gb|EAZ25409.1| hypothetical protein OsJ_09225 [Oryza sativa Japonica Group] gi|215692765|dbj|BAG88233.1| unnamed protein product [Oryza sativa Japonica Group] gi|215734816|dbj|BAG95538.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 128/138 (92%), Positives = 131/138 (94%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DG+VNLMIW C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETLADGTVNLMIWHCTIPGKQGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQ 140
           QPNPADPAQTDGY LFIQ
Sbjct: 123 QPNPADPAQTDGYHLFIQ 140

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110628146|gb|ABG79538.1| putative E2 SUMO conjugating enzyme [Triticum durum]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/141 (90%), Positives = 131/141 (92%), Gaps = 1/141 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MS GGIARGRL EERKAWRKNHPHGFVAKPET  DG+VNLM+W C IPGK GTDWEGGYF
Sbjct: 1   MSSGGIARGRLAEERKAWRKNHPHGFVAKPETLGDGTVNLMVWHCTIPGKQGTDWEGGYF 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           PLTL+FSEDYPSKPPKCKFP  FFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQD
Sbjct: 61  PLTLHFSEDYPSKPPKCKFPTNFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQD 120

Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
           LLDQPNPADPAQTDGY LFIQ
Sbjct: 121 LLDQPNPADPAQTDGYHLFIQ 141

Source: Triticum durum

Species: Triticum durum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242042439|ref|XP_002468614.1| hypothetical protein SORBIDRAFT_01g049010 [Sorghum bicolor] gi|241922468|gb|EER95612.1| hypothetical protein SORBIDRAFT_01g049010 [Sorghum bicolor]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 128/138 (92%), Positives = 131/138 (94%), Gaps = 1/138 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DG+VNLMIW C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETLPDGTVNLMIWHCTIPGKQGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQ 140
           QPNPADPAQTDGY LFIQ
Sbjct: 123 QPNPADPAQTDGYHLFIQ 140

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2095838	160	SCE1 "sumo conjugation enzyme	0.931	0.85	0.883	1.5e-67
DICTYBASE|DDB_G0287693	159	ubc9 "SUMO-conjugating enzyme	0.924	0.849	0.647	1.2e-49
UNIPROTKB|F1P5D0	162	UBE2I "SUMO-conjugating enzyme	0.931	0.839	0.664	5.2e-49
UNIPROTKB|P63283	158	UBE2I "SUMO-conjugating enzyme	0.931	0.860	0.664	5.2e-49
UNIPROTKB|A6H744	158	UBE2I "Uncharacterized protein	0.931	0.860	0.664	5.2e-49
UNIPROTKB|P63279	158	UBE2I "SUMO-conjugating enzyme	0.931	0.860	0.664	5.2e-49
UNIPROTKB|I3LSZ1	158	UBE2I "Uncharacterized protein	0.931	0.860	0.664	5.2e-49
UNIPROTKB|P63282	158	ube2i "SUMO-conjugating enzyme	0.931	0.860	0.664	5.2e-49
MGI|MGI:107365	158	Ube2i "ubiquitin-conjugating e	0.931	0.860	0.664	5.2e-49
RGD|3926	158	Ube2i "ubiquitin-conjugating e	0.931	0.860	0.664	5.2e-49

TAIR|locus:2095838 SCE1 "sumo conjugation enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 121/137 (88%), Positives = 128/137 (93%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIARGRL EERK+WRKNHPHGFVAKPET +DG+VNLM+W C IPGK GTDWEGG+FPLT+
Sbjct:     4 GIARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPLTM 63

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
             +FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED GWRPAITVKQILVGIQDLLD 
Sbjct:    64 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDLLDT 123

Query:   124 PNPADPAQTDGYQLFIQ 140
             PNPADPAQTDGY LF Q
Sbjct:   124 PNPADPAQTDGYHLFCQ 140

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0019789 "SUMO ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016925 "protein sumoylation" evidence=IDA

DICTYBASE|DDB_G0287693 ubc9 "SUMO-conjugating enzyme UBC9" [Dictyostelium discoideum (taxid:44689)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 88/136 (64%), Positives = 110/136 (80%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GI+  RL+EERK WR++HP+GF A+P T  DGS+NL +W C IPGKT T+WEGG +PL +
Sbjct:     3 GISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F+EDYPSKPPKC+FP+ FFHPNVYPSGTVCLSILNE+  W+P++T+K +L+GIQDLLD 
Sbjct:    63 EFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDN 122

Query:   124 PNPADPAQTDGYQLFI 139
             PNP  PAQ     LF+
Sbjct:   123 PNPKSPAQQLPIHLFL 138

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|F1P5D0 UBE2I "SUMO-conjugating enzyme UBC9" [Gallus gallus (taxid:9031)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     7 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 66

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    67 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 126

Query:   124 PNPADPAQTDGYQLFIQ 140
             PN  DPAQ + Y ++ Q
Sbjct:   127 PNIQDPAQAEAYTIYCQ 143

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

UNIPROTKB|P63283 UBE2I "SUMO-conjugating enzyme UBC9" [Gallus gallus (taxid:9031)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQ 140
             PN  DPAQ + Y ++ Q
Sbjct:   123 PNIQDPAQAEAYTIYCQ 139

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A6H744 UBE2I "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQ 140
             PN  DPAQ + Y ++ Q
Sbjct:   123 PNIQDPAQAEAYTIYCQ 139

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|P63279 UBE2I "SUMO-conjugating enzyme UBC9" [Homo sapiens (taxid:9606)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQ 140
             PN  DPAQ + Y ++ Q
Sbjct:   123 PNIQDPAQAEAYTIYCQ 139

GO:0005524 "ATP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001650 "fibrillar center" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0016605 "PML body" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071535 "RING-like zinc finger domain binding" evidence=IPI

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0000795 "synaptonemal complex" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0019789 "SUMO ligase activity" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|I3LSZ1 UBE2I "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQ 140
             PN  DPAQ + Y ++ Q
Sbjct:   123 PNIQDPAQAEAYTIYCQ 139

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|P63282 ube2i "SUMO-conjugating enzyme UBC9" [Xenopus laevis (taxid:8355)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQ 140
             PN  DPAQ + Y ++ Q
Sbjct:   123 PNIQDPAQAEAYTIYCQ 139

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:107365 Ube2i "ubiquitin-conjugating enzyme E2I" [Mus musculus (taxid:10090)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQ 140
             PN  DPAQ + Y ++ Q
Sbjct:   123 PNIQDPAQAEAYTIYCQ 139

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001650 "fibrillar center" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016604 "nuclear body" evidence=ISO;IDA

GO:0016605 "PML body" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0019048 "virus-host interaction" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043398 "HLH domain binding" evidence=IPI

GO:0043425 "bHLH transcription factor binding" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=ISO

RGD|3926 Ube2i "ubiquitin-conjugating enzyme E2I" [Rattus norvegicus (taxid:10116)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 91/137 (66%), Positives = 106/137 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQ 140
             PN  DPAQ + Y ++ Q
Sbjct:   123 PNIQDPAQAEAYTIYCQ 139

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001650 "fibrillar center" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=ISO

GO:0010469 "regulation of receptor activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016604 "nuclear body" evidence=ISO;IDA

GO:0016605 "PML body" evidence=IEA;ISO

GO:0016925 "protein sumoylation" evidence=IEA;ISO;IDA

GO:0019789 "SUMO ligase activity" evidence=ISO;IDA

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0030425 "dendrite" evidence=IDA

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0043398 "HLH domain binding" evidence=IEA;ISO

GO:0043425 "bHLH transcription factor binding" evidence=IPI

GO:0045202 "synapse" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DDJ0	UBC9B_DANRE	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8726	yes	no
P63280	UBC9_MOUSE	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8670	yes	no
Q2EF73	UBC9_SPETR	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8670	N/A	no
Q42551	SCE1_ARATH	6, ., 3, ., 2, ., -	0.8705	0.9452	0.8625	yes	no
O09181	UBC9_MESAU	6, ., 3, ., 2, ., -	0.6304	0.9383	0.8670	N/A	no
P40984	UBC9_SCHPO	6, ., 3, ., 2, ., -	0.6176	0.9246	0.8598	yes	no
P63279	UBC9_HUMAN	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8670	yes	no
Q6Y1Z4	UBC9_PAGMA	6, ., 3, ., 2, ., -	0.6521	0.9383	0.8670	N/A	no
P50623	UBC9_YEAST	6, ., 3, ., 2, ., -	0.6538	0.8835	0.8216	yes	no
P63283	UBC9_CHICK	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8670	yes	no
P63282	UBC9_XENLA	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8670	N/A	no
P63281	UBC9_RAT	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8670	yes	no
Q95017	UBC9_CAEEL	6, ., 3, ., 2, ., -	0.5942	0.9383	0.8253	yes	no
Q9W6H5	UBC9A_DANRE	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8670	yes	no
Q28CQ4	UBC9_XENTR	6, ., 3, ., 2, ., -	0.6594	0.9383	0.8670	yes	no
Q9NGP4	UBC9_DICDI	6, ., 3, ., 2, ., -	0.6423	0.9315	0.8553	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI3G32080.1 annotation not avaliable (161 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	3e-55
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	4e-55
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	2e-53
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	6e-48
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	5e-22
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	5e-21

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  170 bits (432), Expect = 3e-55
 Identities = 62/132 (46%), Positives = 74/132 (56%), Gaps = 5/132 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL +E K  +K+ P G  A P   D   NL  WE  I G   T +EGG F LTL F 
Sbjct: 6   ALKRLLKELKKLQKDPPPGISAGPVDDD---NLFHWEATITGPPDTPYEGGIFKLTLEFP 62

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           EDYP KPPK +F    FHPNV PSG VCL IL +   W P  T++ IL+ +Q LL  PNP
Sbjct: 63  EDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDR--WSPVYTLETILLSLQSLLLSPNP 120

Query: 127 ADPAQTDGYQLF 138
             P  T+   L+
Sbjct: 121 DSPLNTEAATLY 132

Length = 153

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  168 bits (429), Expect = 4e-55
 Identities = 61/131 (46%), Positives = 79/131 (60%), Gaps = 5/131 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K   K+ P G  A P       NL  WE  I G  GT +EGG F L + F EDY
Sbjct: 1   RLQKELKELLKDPPPGISAFPV----DDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDY 56

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK KF    +HPNV PSG +CL IL ++N W PA+T++Q+L+ IQ LL +PNP DP
Sbjct: 57  PFKPPKVKFTTKIYHPNVDPSGEICLDILKDEN-WSPALTIEQVLLSIQSLLSEPNPEDP 115

Query: 130 AQTDGYQLFIQ 140
              +  +L+ +
Sbjct: 116 LNAEAAKLYRK 126

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  165 bits (419), Expect = 2e-53
 Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 4/131 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K  RK+ P GF A P   +   NL+ W   I G  GT +EGG F LT+ F EDY
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDE---NLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDY 57

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK KF    +HPNV  SG +CL IL ++  W PA+T++ +L+ +Q LL +PNP  P
Sbjct: 58  PFKPPKVKFITKIYHPNVDSSGEICLDILKQEK-WSPALTLETVLLSLQSLLSEPNPDSP 116

Query: 130 AQTDGYQLFIQ 140
              D  +L+ +
Sbjct: 117 LNADAAELYKK 127

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  151 bits (383), Expect = 6e-48
 Identities = 55/131 (41%), Positives = 79/131 (60%), Gaps = 5/131 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K  +K+ P G  A+P  +    NL+ W   I G   T +EGG F L + F EDY
Sbjct: 3   RLQKELKDLKKDPPSGISAEPVEE----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDY 58

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK +F    +HPNV  +G +CLSIL    GW PA T++ +L+ +Q LL++PNP+DP
Sbjct: 59  PFKPPKVRFVTKIYHPNVDENGKICLSILKTH-GWSPAYTLRTVLLSLQSLLNEPNPSDP 117

Query: 130 AQTDGYQLFIQ 140
              +  +L+ +
Sbjct: 118 LNAEAAKLYKE 128

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 85.2 bits (211), Expect = 5e-22
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    + P G  A+P+      N   ++ ++ G  GT +EGGY+ L L+  E Y
Sbjct: 6   RIEKETQNLANDPPPGIKAEPDPG----NYRHFKILMEGPDGTPYEGGYYKLELFLPEQY 61

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P +PPK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  P P DP
Sbjct: 62  PMEPPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPEPDDP 119

Query: 130 AQT 132
             T
Sbjct: 120 LDT 122

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 82.9 bits (204), Expect = 5e-21
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 6/124 (4%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E K   K+ P    A P  +    NL  W   I G + + + GG F L++ F
Sbjct: 1   MATKRIQKEHKDLLKDPPSNCSAGPSDE----NLFRWTASIIGPSDSPYAGGVFFLSILF 56

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK +F    +HPN+  +G++CL IL +   W PA+TV ++L+ I  LL  PN
Sbjct: 57  PPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQ--WSPALTVSKVLLSISSLLTDPN 114

Query: 126 PADP 129
           P DP
Sbjct: 115 PDDP 118

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.98
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.91
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.89
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.74
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.65
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.61
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.82
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.8
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.52
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	98.15
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	97.76
KOG3357	167	consensus Uncharacterized conserved protein [Funct	96.69
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.67
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	96.43
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	96.13
smart00591	107	RWD domain in RING finger and WD repeat containing	96.12
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	91.77
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	88.5
KOG4018	215	consensus Uncharacterized conserved protein, conta	87.94
PF14460	175	Prok-E2_D: Prokaryotic E2 family D	81.09

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-53  Score=297.02  Aligned_cols=135  Identities=45%  Similarity=0.775  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (146)
                      .|.+||++|++.+++++++++++.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|+|+||||
T Consensus         5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d---~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HP   81 (153)
T COG5078           5 SALKRLLKELKKLQKDPPPGISAGPVDD---DNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHP   81 (153)
T ss_pred             hHHHHHHHHHHHHhcCCCCceEEEECCC---CcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCC
Confidence            3999999999999999999999999883   3999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        86 nV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+||.++|+|.|||++|++|+++|
T Consensus        82 NV~~~G~vCLdIL~~--~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y  139 (153)
T COG5078          82 NVDPSGNVCLDILKD--RWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEY  139 (153)
T ss_pred             CcCCCCCChhHHHhC--CCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHH
Confidence            999999999999998  8999999999999999999999999999999999999999988

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.8e-53  Score=289.74  Aligned_cols=133  Identities=38%  Similarity=0.737  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      +.+||.||++++.+++++||++.+..    +|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+|||||
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~----dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPN   77 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVG----DNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPN   77 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCC----CceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCC
Confidence            36799999999999999999999777    89999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |++.|+||+++|..  .|+|+.+|..||.+|+++|.+||+++|++.++|++|++|+.+|
T Consensus        78 I~~~G~IclDILk~--~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~  134 (148)
T KOG0417|consen   78 IDSNGRICLDILKD--QWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKY  134 (148)
T ss_pred             cCccccchHHhhhc--cCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHH
Confidence            99999999999999  7999999999999999999999999999999999999999987

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-52  Score=277.98  Aligned_cols=138  Identities=43%  Similarity=0.791  Sum_probs=134.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      |+  +.|.+||.+|++.++++++.|++..|.+    +|+++|.+.|.||++|||+||+|++.|.|+++||.+||.|+|++
T Consensus         1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~----~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs   74 (152)
T KOG0419|consen    1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVE----NNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS   74 (152)
T ss_pred             CC--chHHHHHHHHHHHhhcCCCCCccCCCCc----cceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee
Confidence            67  8999999999999999999999999999    89999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159           81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        81 ~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~  146 (146)
                      ++||||||.+|.+|+++|..  .|+|.|++.+||.+||+||.+|++++|+|.|||++|++|+.+|+
T Consensus        75 ~mFHPNvya~G~iClDiLqN--rWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~  138 (152)
T KOG0419|consen   75 KMFHPNVYADGSICLDILQN--RWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYE  138 (152)
T ss_pred             eccCCCcCCCCcchHHHHhc--CCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHH
Confidence            99999999999999999999  89999999999999999999999999999999999999998874

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=4.8e-49  Score=278.28  Aligned_cols=133  Identities=34%  Similarity=0.702  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      +.|||++|++++++++++++.+.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~----~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN   78 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDP----GNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN   78 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECC----CCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence            68999999999999999999999877    79999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |+++|.||+++|.+  +|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+.+|
T Consensus        79 V~~~G~iCl~iL~~--~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f  135 (152)
T PTZ00390         79 IDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADA  135 (152)
T ss_pred             ECCCCeEECccCcc--cCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHH
Confidence            99999999999987  8999999999999999999999999999999999999999988

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=2.8e-48  Score=273.20  Aligned_cols=132  Identities=36%  Similarity=0.738  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   87 (146)
                      .+||++|++++++++++++++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         3 ~~Rl~kE~~~l~~~~~~~~~~~~~~----~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv   78 (147)
T PLN00172          3 TKRIQKEHKDLLKDPPSNCSAGPSD----ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI   78 (147)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEECC----CChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence            6999999999999999999999876    899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           88 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        88 ~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      +.+|.||+++|.+  .|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 ~~~G~iCl~il~~--~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f  134 (147)
T PLN00172         79 NSNGSICLDILRD--QWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRY  134 (147)
T ss_pred             CCCCEEEcccCcC--CCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHH
Confidence            9999999999987  8999999999999999999999999999999999999999988

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-47  Score=260.75  Aligned_cols=142  Identities=32%  Similarity=0.605  Sum_probs=133.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      |++ +.+..-|+++|++|++.+..|+++...++   .|+++|.|.|.||++|+|+||.|+..+.||.+||.+||++||.+
T Consensus         1 m~~-~~a~~ll~~qlk~L~~~pv~gf~~glvd~---~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s   76 (171)
T KOG0425|consen    1 MTS-SQASLLLLKQLKELQEEPVEGFSVGLVDD---SDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS   76 (171)
T ss_pred             Ccc-chhHHHHHHHHHHHhcCCCCccccccccC---CceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh
Confidence            443 44788899999999999999999988774   79999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159           81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        81 ~i~HpnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~  146 (146)
                      ++||||||++|++|+++|.+           .+.|.|.+|+++||++|.+||.+||.++|+|.|||+.|++|+++|.
T Consensus        77 ~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~Eyk  153 (171)
T KOG0425|consen   77 KMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYK  153 (171)
T ss_pred             hhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHH
Confidence            99999999999999999986           3579999999999999999999999999999999999999999983

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-46  Score=252.12  Aligned_cols=143  Identities=66%  Similarity=1.201  Sum_probs=138.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (146)
                      ||  +.+..||+.|-+.+.++.+-|+.+.|..+ ++..|++.|++.|.|++||+||||.|.+++.||++||.+||+++|.
T Consensus         1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~   78 (158)
T KOG0424|consen    1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK   78 (158)
T ss_pred             Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence            66  78899999999999999999999999998 6689999999999999999999999999999999999999999999


Q ss_pred             cCccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        80 t~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      +++||||||.+|.||+++|.++.+|+|+.||.+||.+||+||.+||+.+|+|.||..+|.+|+..|
T Consensus        79 ~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eY  144 (158)
T KOG0424|consen   79 PPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEY  144 (158)
T ss_pred             CCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHH
Confidence            999999999999999999999667999999999999999999999999999999999999999876

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-45  Score=245.24  Aligned_cols=140  Identities=41%  Similarity=0.766  Sum_probs=135.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      |+  ..|.|||++||++|..++++||.+.|..+   +|.++|.+.|.||++|+|+||.|..++.||.+||.+||+++|..
T Consensus         1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~E---dnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc   75 (165)
T KOG0426|consen    1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINE---DNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC   75 (165)
T ss_pred             Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCc---cceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec
Confidence            66  78999999999999999999999999886   89999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        81 ~i~HpnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      .+|||||+.+|++|+++|..           .+.|+|..+++.||+++.++|.+||.++++|.+|+.+|++|+.+|
T Consensus        76 ~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef  151 (165)
T KOG0426|consen   76 EMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEF  151 (165)
T ss_pred             ccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHH
Confidence            99999999999999999974           368999999999999999999999999999999999999999998

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=5e-44  Score=250.00  Aligned_cols=132  Identities=41%  Similarity=0.790  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccCC
Q 032159           10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP   89 (146)
Q Consensus        10 Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   89 (146)
                      ||++|+++++++++.|+.+.+...   +|+.+|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~---~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~   77 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSED---DNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE   77 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEEST---TETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCC---CChheEEEEEeccCccceecccccccccccccccccccccccccccccccccc
Confidence            899999999999999999999882   49999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           90 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        90 ~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      +|+||+++|..+ .|+|++++.+||.+|+++|.+|+.++|+|.+||++|++|+++|
T Consensus        78 ~G~icl~~l~~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f  132 (140)
T PF00179_consen   78 NGRICLDILNPE-SWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEF  132 (140)
T ss_dssp             TSBBGHGGGTTT-TC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHH
T ss_pred             cccchhhhhhcc-cCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHH
Confidence            999999999862 5999999999999999999999999999999999999999988

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=1.8e-43  Score=247.45  Aligned_cols=133  Identities=42%  Similarity=0.806  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccC
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   88 (146)
                      |||++|+++++++++.|+.+.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~----~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~   77 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVE----ENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD   77 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECC----CChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence            799999999999999999999887    7999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159           89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        89 ~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~  146 (146)
                      .+|.||+++|..+ +|+|++++.+||.+|+++|.+|+.++|+|.+||++|++|+++|.
T Consensus        78 ~~G~icl~~l~~~-~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~  134 (141)
T cd00195          78 ENGKICLSILKTH-GWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFK  134 (141)
T ss_pred             CCCCCchhhcCCC-CcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHH
Confidence            9999999999872 49999999999999999999999999999999999999999983

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-44  Score=252.35  Aligned_cols=136  Identities=34%  Similarity=0.619  Sum_probs=130.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 032159            1 MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (146)
                      |+  . +.+||++|.+++.+++   ..+|.+....    +|+.+..+.|.||+|||||||+|.++|++|++|||+||+|+
T Consensus         1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn----~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~   73 (200)
T KOG0418|consen    1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVN----ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK   73 (200)
T ss_pred             Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEcc----CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence            66  5 8999999999999887   6899999888    89999999999999999999999999999999999999999


Q ss_pred             eccCccccccCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           78 FPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        78 f~t~i~HpnV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |.|+||||||++ +|.||+++|.+  .|.+++||..+|++||++|..|++.+|.+...|++|.+|++.|
T Consensus        74 F~TkIwHPnVSs~tGaICLDilkd--~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F  140 (200)
T KOG0418|consen   74 FITKIWHPNVSSQTGAICLDILKD--QWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMF  140 (200)
T ss_pred             eeeeeecCCCCcccccchhhhhhc--ccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHH
Confidence            999999999985 99999999999  8999999999999999999999999999999999999999988

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-44  Score=242.53  Aligned_cols=134  Identities=36%  Similarity=0.600  Sum_probs=129.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      ....|||++||..|+....+||++.|..    +|+++|.++|.||.+|+|+|-.|++.+.||.+||++||.|+|+|+.||
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~----dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H  103 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPGISAFPES----DNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH  103 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcccCcCc----CceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence            4568999999999999999999999988    899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+..|.||+++|.+  .|+..|.++.||++||++|-+||.++|+|..||++|. |+++|
T Consensus       104 PNVD~~GnIcLDILkd--KWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~ey  161 (175)
T KOG0421|consen  104 PNVDLSGNICLDILKD--KWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEY  161 (175)
T ss_pred             CCccccccchHHHHHH--HHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHH
Confidence            9999999999999999  8999999999999999999999999999999999998 77665

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=1.8e-41  Score=238.37  Aligned_cols=132  Identities=45%  Similarity=0.772  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccC
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   88 (146)
                      +||++|+++++++.+.|+.+.+..+   +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~---~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~   77 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDE---DNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD   77 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCC---CChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence            5999999999999999999888762   4999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEecCCC-CCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           89 PSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        89 ~~G~icl~~l~-~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ++|.+|+++|. +  +|+|++++.+||.+|+++|.+|+.++|+|.+||++|++|+++|
T Consensus        78 ~~G~icl~~l~~~--~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f  133 (145)
T smart00212       78 SSGEICLDILKQE--KWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEF  133 (145)
T ss_pred             CCCCEehhhcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            99999999998 5  8999999999999999999999999999999999999999987

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-39  Score=219.47  Aligned_cols=135  Identities=32%  Similarity=0.588  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      +.+||+|||.+|+++....+.-...+   ..|++.|++.+. |++-||..|.|+++|.||.+|||+||+|.|.|+|||||
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~---e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN   78 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVD---EANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN   78 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcc---cccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence            78999999999999877644432222   289999999999 89999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~  146 (146)
                      ||+.|.+|+.++.. |+|.|++...+||++|..++.+|+++.|++.|+|..|.+|+.+|.
T Consensus        79 VDe~gqvClPiis~-EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~  137 (153)
T KOG0422|consen   79 VDEKGQVCLPIISA-ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFV  137 (153)
T ss_pred             CCCCCceeeeeeec-ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHH
Confidence            99999999999987 499999999999999999999999999999999999999999983

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-38  Score=220.43  Aligned_cols=136  Identities=30%  Similarity=0.516  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecC-CCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~-~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (146)
                      +.|.-||++|..++  +.++.++..... .++ -+..+++++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|++|
T Consensus        27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d-~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~  102 (184)
T KOG0420|consen   27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDD-LNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY  102 (184)
T ss_pred             cHHHHHHHhhhhhc--cCCCccccccccCCcc-cccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence            56778888888877  455566543222 221 22226999999 99999999999999999999999999999999999


Q ss_pred             ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~  146 (146)
                      ||||+.+|.||+++|++  +|+|+.+|.+|+.+|+.+|.+|++++|+|.|||+.+++|++.|.
T Consensus       103 HPNId~~GnVCLnILRe--dW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~  163 (184)
T KOG0420|consen  103 HPNIDLDGNVCLNILRE--DWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFE  163 (184)
T ss_pred             cCCcCCcchHHHHHHHh--cCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHH
Confidence            99999999999999999  89999999999999999999999999999999999999999983

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-37  Score=215.86  Aligned_cols=130  Identities=24%  Similarity=0.503  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      ..|||..|...|....   ..+....    +++.+++|.+.||.+|||+||+++++|++|++||++.|.|.|+++|||||
T Consensus         4 ~~rRid~Dv~KL~~s~---yeV~~in----d~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN   76 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLMSD---YEVTIIN----DGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN   76 (189)
T ss_pred             cccchhhHHHHHHhcC---CeEEEec----CcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence            5799999998887653   4555555    67999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CCcEEecCCCCCCCCCccCcHHHHHH-HHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYP-SGTVCLSILNEDNGWRPAITVKQILV-GIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~-~G~icl~~l~~~~~W~p~~~l~~vl~-~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |++ +|.||++.+.+  .|+|.+.+..|+. .|-.||..||+.+|+|.|||.+|.+++++|
T Consensus        77 IDe~SGsVCLDViNQ--tWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y  135 (189)
T KOG0416|consen   77 IDEASGSVCLDVINQ--TWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEY  135 (189)
T ss_pred             chhccCccHHHHHhh--hhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHH
Confidence            996 99999999999  8999999999986 568899999999999999999999999886

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.6e-35  Score=204.06  Aligned_cols=134  Identities=27%  Similarity=0.560  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      ..|.+.+|++.+..++++||.+.+-+    .|+....+.|.||.||||++|.|+..+.+..+||.+||+-.|+|+|||||
T Consensus        11 vik~~~kEl~~l~~~PPdGIKV~~Ne----eD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN   86 (223)
T KOG0423|consen   11 VIKQLAKELKSLDESPPDGIKVVVNE----EDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN   86 (223)
T ss_pred             HHHHHHHHHHhcccCCCCceEEecCh----HHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence            47889999999999999999998876    78999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~  146 (146)
                      |..+|.||.+.|..  +|.|..+|..||..|+.+|..|++++.+|.+|++++.++..+|+
T Consensus        87 VaaNGEICVNtLKk--DW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa  144 (223)
T KOG0423|consen   87 VAANGEICVNTLKK--DWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYA  144 (223)
T ss_pred             cccCceehhhhhhc--ccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHH
Confidence            99999999999999  89999999999999999999999999999999999999998773

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=6.9e-32  Score=181.07  Aligned_cols=120  Identities=32%  Similarity=0.678  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-c
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-F   83 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~   83 (146)
                      .+|.+||+|||.+++.+++.|+.....     +|+.+|.+.+.|.+||.|+|.+|.+.++||+.||++.|.|.|..++ .
T Consensus        14 ~~at~RLqKEl~e~q~~pP~G~~~~v~-----dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~   88 (161)
T KOG0427|consen   14 KIATNRLQKELSEWQNNPPTGFKHRVT-----DNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL   88 (161)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceeecc-----cchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence            578999999999999999999998743     6999999999999999999999999999999999999999999876 7


Q ss_pred             ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcC-CCCCCCCC
Q 032159           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ-PNPADPAQ  131 (146)
Q Consensus        84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~-p~~~~p~n  131 (146)
                      ||+||++|.||+++|.+  +|+|++++.+|.++|.++|.+ ..-..|.+
T Consensus        89 HPHiYSNGHICL~iL~d--~WsPAmsv~SvClSIlSMLSSs~eKqrP~D  135 (161)
T KOG0427|consen   89 HPHIYSNGHICLDILYD--SWSPAMSVQSVCLSILSMLSSSKEKQRPTD  135 (161)
T ss_pred             CCceecCCeEEEEeecc--cCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence            99999999999999999  899999999999999999954 33334443

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.9e-30  Score=185.25  Aligned_cols=116  Identities=31%  Similarity=0.585  Sum_probs=106.3

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      |+ +..|.|||+|||+.|.+++.+++.+.|..    +|+.+||.++.||++|||+||.|+.+|.||++||++||.|+++|
T Consensus         1 ma-~k~a~kRl~keY~~l~k~Pv~~i~A~P~p----~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT   75 (244)
T KOG0894|consen    1 MA-SKAAVKRLQKEYRALCKDPVPYIVARPNP----NNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT   75 (244)
T ss_pred             Cc-chHHHHHHHHHHHHHHhCCchhhccCCCc----cceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence            55 36799999999999999999999999988    89999999999999999999999999999999999999999998


Q ss_pred             C--ccccccCCCCcEEecCCCC-CCCCCccCcHHHHHHHHHHhhcCCC
Q 032159           81 G--FFHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPN  125 (146)
Q Consensus        81 ~--i~HpnV~~~G~icl~~l~~-~~~W~p~~~l~~vl~~i~~ll~~p~  125 (146)
                      +  +|-+|    -++|+++-.. .+.|.|++++.+||.+|.++|.+-.
T Consensus        76 PNGRFktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~  119 (244)
T KOG0894|consen   76 PNGRFKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS  119 (244)
T ss_pred             CCCceecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence            5  67777    6999999875 3489999999999999999996533

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5e-24  Score=154.63  Aligned_cols=131  Identities=23%  Similarity=0.370  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCC--CCCeeeeccCccccc
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHPN   86 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hpn   86 (146)
                      --|..|+..+.+.+.+||++.|.-    .|-+.|.++|++.. +.|.||+|+|+|.+|++||.  +-|+|.|.+.++||+
T Consensus        22 y~llAEf~lV~~ekL~gIyviPSy----an~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~   96 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIPSY----ANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPL   96 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEcccc----cccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeeccccccc
Confidence            457788888888999999999998    89999999999765 67999999999999999995  479999999999999


Q ss_pred             cCC-CCcEEecCCCCCCCCCccC-cHHHHHHHHHHhhcCCCCCCC--CCHHHHHHHHHhHhhhC
Q 032159           87 VYP-SGTVCLSILNEDNGWRPAI-TVKQILVGIQDLLDQPNPADP--AQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        87 V~~-~G~icl~~l~~~~~W~p~~-~l~~vl~~i~~ll~~p~~~~p--~n~~aa~~~~~~~~~f~  146 (146)
                      |.+ ++.+|++-...  .|.... +|++||..||.+|.+|+.+.+  .|+|||.+|++++++|+
T Consensus        97 icp~skeLdl~raf~--eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~  158 (258)
T KOG0429|consen   97 ICPKSKELDLNRAFP--EWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFR  158 (258)
T ss_pred             cCCCccceeHhhhhh--hhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHH
Confidence            995 99999998888  698776 899999999999999998866  59999999999999984

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=8.6e-23  Score=150.43  Aligned_cols=112  Identities=29%  Similarity=0.559  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC--c
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--F   82 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i   82 (146)
                      +.+.|||+||.++++ ++.+.+.+.+.+    +|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+  .
T Consensus        10 npaVkRlmkEa~El~-~Ptd~yha~plE----dNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR   84 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELK-DPTDHYHAQPLE----DNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR   84 (314)
T ss_pred             CHHHHHHHHHHHHhc-Cchhhhhhccch----hceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc
Confidence            578999999999996 888899999999    899999999999999999999999999999999999999999885  4


Q ss_pred             cccccCCCCcEEecCCCC-CCCCCccCcHHHHHHHHHHhh-cCCC
Q 032159           83 FHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLL-DQPN  125 (146)
Q Consensus        83 ~HpnV~~~G~icl~~l~~-~~~W~p~~~l~~vl~~i~~ll-~~p~  125 (146)
                      |.-|    -+||+++-.- .|.|.|+++|...|.+|..+| ..|+
T Consensus        85 FE~n----kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~  125 (314)
T KOG0428|consen   85 FEVN----KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE  125 (314)
T ss_pred             eeeC----ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence            5444    6899999864 458999999999999999988 4454

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.7e-18  Score=146.34  Aligned_cols=112  Identities=32%  Similarity=0.650  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC--cccc
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHP   85 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~Hp   85 (146)
                      .+..+.|++.+..+.+.++.+...+    +-+.-..+.|.|++||||.+|.|.|+|.||++||.+||.|...+.  ++.|
T Consensus       853 ~~~~~~~~~~~~~~~~~~~~vr~~e----~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np  928 (1101)
T KOG0895|consen  853 AKKVQTEWKILPLSLPSGIFVRAYE----DRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP  928 (1101)
T ss_pred             HHHHHHHHHhhhccCCCceEEEech----HHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence            3445667777777899999998877    566666899999999999999999999999999999999999974  6899


Q ss_pred             ccCCCCcEEecCCCC-----CCCCCccCcHHHHHHHHHHhhcC
Q 032159           86 NVYPSGTVCLSILNE-----DNGWRPAITVKQILVGIQDLLDQ  123 (146)
Q Consensus        86 nV~~~G~icl~~l~~-----~~~W~p~~~l~~vl~~i~~ll~~  123 (146)
                      |.|++|++|+++|..     .|.|+|+-++.+||.+||.|...
T Consensus       929 nly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~  971 (1101)
T KOG0895|consen  929 NLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN  971 (1101)
T ss_pred             ccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence            999999999999986     46899988999999999999843

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=8.6e-16  Score=131.98  Aligned_cols=116  Identities=30%  Similarity=0.621  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC---
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG---   81 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---   81 (146)
                      ....+|+++|++.+.++.+.++.+.+.+    ..+....+.|.|+.||||++|+|.|+|.||..||..||.|.+++.   
T Consensus       281 ~~~skrv~ke~~llskdlpEgifvrp~e----~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~  356 (1101)
T KOG0895|consen  281 KNWSKKVAKELKLLSKDLPEGIFVRPDE----GRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGV  356 (1101)
T ss_pred             hhhHHHHHHHhhhhcccCCCCccccccc----cccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccce
Confidence            3468999999999999999999999988    889999999999999999999999999999999999999999986   


Q ss_pred             ccccccCCCCcEEecCCCC-----CCCCCcc-CcHHHHHHHHHHhhcCC
Q 032159           82 FFHPNVYPSGTVCLSILNE-----DNGWRPA-ITVKQILVGIQDLLDQP  124 (146)
Q Consensus        82 i~HpnV~~~G~icl~~l~~-----~~~W~p~-~~l~~vl~~i~~ll~~p  124 (146)
                      .+.||.|.+|+||+++|..     .+.|+|. -++.++|..||.+..+-
T Consensus       357 R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  357 RLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             eecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence            6899999999999999975     2579999 69999999999998553

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=2.5e-15  Score=101.70  Aligned_cols=117  Identities=22%  Similarity=0.296  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (146)
                      .+.-||.+|+.+=.+...++...+-.+++++--+..|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++--+
T Consensus         5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~   84 (138)
T KOG0896|consen    5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN   84 (138)
T ss_pred             ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence            34557888888776666666666666655556778999999999999999999999999999999999999999999988


Q ss_pred             ccCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhc
Q 032159           86 NVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (146)
Q Consensus        86 nV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~  122 (146)
                      .|.. +|.+.-..+.--++|.-.+++..+|..++.++.
T Consensus        85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~  122 (138)
T KOG0896|consen   85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM  122 (138)
T ss_pred             ccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence            8874 777665444422379999999999999987663

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4.4e-09  Score=69.56  Aligned_cols=75  Identities=23%  Similarity=0.466  Sum_probs=59.8

Q ss_pred             EEEEEEeCCCCCCCCCeeeeccCccc-cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCC--CCCCCCHHH
Q 032159           59 FPLTLYFSEDYPSKPPKCKFPQGFFH-PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN--PADPAQTDG  134 (146)
Q Consensus        59 f~~~i~fp~~YP~~pP~v~f~t~i~H-pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~--~~~p~n~~a  134 (146)
                      .-+.+.|+++||+.||.+|...|+-. .-|-.+|+||+.+|..+ +|+.+++++.++.++...+..-.  .+.+++.+.
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q-gwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~s   90 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ-GWSSAYEVERVIMQIAATLVKGGARIEFPAEKSS   90 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc-cccchhhHHHHHHHHHHHhhccceeEecCcchhh
Confidence            45677899999999999998876543 33446899999999985 99999999999999999986533  456665553

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.80  E-value=3.5e-08  Score=68.30  Aligned_cols=84  Identities=27%  Similarity=0.528  Sum_probs=67.0

Q ss_pred             CCCEEEEEEEeCCCCCCCCCeeeeccCc---cccccCCCCcEEe---cCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCC
Q 032159           55 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNGWRPAITVKQILVGIQDLLDQPNPAD  128 (146)
Q Consensus        55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~G~icl---~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~  128 (146)
                      .|+.+.+.|.+|+.||..||.|....+.   +-|||+.+|.+|+   +...+  .|.|.-.+.++|.....+|.+ ....
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D--~~~P~~~~~~~l~~a~~lL~~-~~~~  110 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD--PWDPEGIIADCLERAIRLLED-GLSG  110 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC--ccCHHHHHHHHHHHHHHHHHH-hhcC
Confidence            6899999999999999999999888644   6899999999999   66666  899999999999999999873 2222


Q ss_pred             CCCHHHHHHHHHh
Q 032159          129 PAQTDGYQLFIQV  141 (146)
Q Consensus       129 p~n~~aa~~~~~~  141 (146)
                      .-..|.++.+..-
T Consensus       111 ~~~~d~~~Ef~sY  123 (133)
T PF14461_consen  111 DNEDDFADEFQSY  123 (133)
T ss_pred             CchHHHHHHHHHH
Confidence            2245555555443

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.52  E-value=4.5e-07  Score=61.82  Aligned_cols=79  Identities=23%  Similarity=0.492  Sum_probs=54.5

Q ss_pred             CCccEEEEEEcCCCCCCCCCCEE--EEEEEeCCCCCCCCCeeeeccCc-----cccccCCCCcEEecCCCCCCCCCc-cC
Q 032159           37 VNLMIWECIIPGKTGTDWEGGYF--PLTLYFSEDYPSKPPKCKFPQGF-----FHPNVYPSGTVCLSILNEDNGWRP-AI  108 (146)
Q Consensus        37 ~~~~~w~~~i~gp~~tpy~gg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HpnV~~~G~icl~~l~~~~~W~p-~~  108 (146)
                      ..+....++|.    -.|+|..|  -+.|.+|.+||.+||.|......     -+.+|+.+|+|.+..|..   |.+ ..
T Consensus        30 ~~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~---W~~~~s  102 (121)
T PF05743_consen   30 KLLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN---WNPPSS  102 (121)
T ss_dssp             EEEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT-----TTTS
T ss_pred             heEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc---CCCCCC
Confidence            34445555554    25788777  57778999999999999776321     244999999999999876   988 66


Q ss_pred             cHHHHHHHHHHhhc
Q 032159          109 TVKQILVGIQDLLD  122 (146)
Q Consensus       109 ~l~~vl~~i~~ll~  122 (146)
                      +|.+++..+...|.
T Consensus       103 ~L~~lv~~l~~~F~  116 (121)
T PF05743_consen  103 NLVDLVQELQAVFS  116 (121)
T ss_dssp             -HHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998885

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=1.7e-05  Score=61.93  Aligned_cols=85  Identities=24%  Similarity=0.508  Sum_probs=64.4

Q ss_pred             CCCCccEEEEEEcCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeeeccC-----ccccccCCCCcEEecCCCCCCCCCcc
Q 032159           35 GSVNLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNGWRPA  107 (146)
Q Consensus        35 ~~~~~~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HpnV~~~G~icl~~l~~~~~W~p~  107 (146)
                      ...+++...++|.    .+|.|.+|.  +.|.+.+.||..||.|.....     -.|-+|+.+|+|.+..|.+   |.+.
T Consensus        48 ~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~---W~~p  120 (365)
T KOG2391|consen   48 RSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN---WDPP  120 (365)
T ss_pred             CccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---CCCc
Confidence            3355555444444    578887765  677789999999999966521     1399999999999999986   8655


Q ss_pred             -CcHHHHHHHHHHhhcCCCC
Q 032159          108 -ITVKQILVGIQDLLDQPNP  126 (146)
Q Consensus       108 -~~l~~vl~~i~~ll~~p~~  126 (146)
                       ..|..+++.|-+.|.++.+
T Consensus       121 ssdLv~Liq~l~a~f~~~pP  140 (365)
T KOG2391|consen  121 SSDLVGLIQELIAAFSEDPP  140 (365)
T ss_pred             cchHHHHHHHHHHHhcCCCc
Confidence             5899999999999977544

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=97.76  E-value=2.4e-05  Score=54.02  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHc-------CCCCeEEeecCCCCCCCccEEEEEEcC-CCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 032159            6 IARGRLTEERKAWRKN-------HPHGFVAKPETKDGSVNLMIWECIIPG-KTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~-------~~~~~~~~~~~~~~~~~~~~w~~~i~g-p~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (146)
                      .-..||..||..|.+-       ..+.+.+.. +    .+=..|.+.--- -..--   -.|.+++.+|..||..||.+.
T Consensus        24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n----~~GT~W~GkCW~~h~l~k---YEF~~eFdIP~tYP~t~pEi~   95 (161)
T PF08694_consen   24 LWVQRLKEEYQALIKYVENNKENDNDWFRLES-N----KEGTRWFGKCWYIHNLLK---YEFDLEFDIPVTYPTTAPEIA   95 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE------TTSSEEEEEEEEEETTEE---EEEEEEEE--TTTTTS----B
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeEEecc-C----CCCCccccEEEEEeeeee---EEEeeecCCCccCCCCCccee
Confidence            4578999999988541       222333321 1    233334322110 00011   246677778999999999998


Q ss_pred             eccC-ccccccCCCCcEEecCCCCCCCC---CccCcHHHHH
Q 032159           78 FPQG-FFHPNVYPSGTVCLSILNEDNGW---RPAITVKQIL  114 (146)
Q Consensus        78 f~t~-i~HpnV~~~G~icl~~l~~~~~W---~p~~~l~~vl  114 (146)
                      ...- --..-.|..|+||++.-... =|   .|.++|...|
T Consensus        96 lPeLdGKTaKMYRGGkIClt~HFkP-LWakN~PkfGIaHal  135 (161)
T PF08694_consen   96 LPELDGKTAKMYRGGKICLTDHFKP-LWAKNVPKFGIAHAL  135 (161)
T ss_dssp             -GGGTTT-SSBCCCCBB---TTHHH-HHHCTTTT--HHHHH
T ss_pred             ccccCCchhhhhcCceEeeecccch-hhhhcCCchhHHHHH
Confidence            7531 12344567899999875431 24   3455555443

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.0039  Score=42.59  Aligned_cols=89  Identities=21%  Similarity=0.362  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCC----------EEEEEEEeCCCCCCCCCe
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPK   75 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~   75 (146)
                      .-.+||..||+.|......+-       +..+|.+.   .=.-++||-|-|.          .|.+++.+|-.||..+|.
T Consensus        27 ~wvqrlkeey~sli~yvqnnk-------~~d~dwfr---lesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape   96 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIAYVQNNK-------SNDNDWFR---LESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE   96 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc-------ccCCcceE---eccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence            457899999999865311110       11133332   2244778888774          355666779999999999


Q ss_pred             eeeccC-ccccccCCCCcEEecCCCCCCCCC
Q 032159           76 CKFPQG-FFHPNVYPSGTVCLSILNEDNGWR  105 (146)
Q Consensus        76 v~f~t~-i~HpnV~~~G~icl~~l~~~~~W~  105 (146)
                      +....- --.-..|..|+||+.--... -|.
T Consensus        97 ialpeldgktakmyrggkiclt~hfkp-lwa  126 (167)
T KOG3357|consen   97 IALPELDGKTAKMYRGGKICLTDHFKP-LWA  126 (167)
T ss_pred             ccccccCchhhhhhcCceEeeccccch-hhh
Confidence            876421 11223466799999755431 454

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.67  E-value=0.01  Score=38.90  Aligned_cols=69  Identities=19%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (146)
                      .+.+.|+..|..--+... .....    .+...+.+.+.+  ...+.-....+++.+.||++||..+|.|...+..
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIES----KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTS----SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCc-ccccc----CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            467788888876544444 11111    455566777732  2333445568999999999999999999876543

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=96.43  E-value=0.042  Score=37.41  Aligned_cols=84  Identities=18%  Similarity=0.313  Sum_probs=53.3

Q ss_pred             CccEEEEEEcC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc-------cccC-----CCCcEEecCCCCCCC
Q 032159           38 NLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH-------PNVY-----PSGTVCLSILNEDNG  103 (146)
Q Consensus        38 ~~~~w~~~i~g--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H-------pnV~-----~~G~icl~~l~~~~~  103 (146)
                      .-..|.+ |.|  -+.+.|.+..-.+-|.+|+.||..+|.+.+..+...       ||-.     -.|+.--..-.....
T Consensus        22 g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~  100 (122)
T PF14462_consen   22 GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNP  100 (122)
T ss_pred             CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCC
Confidence            4444544 565  445669999999999999999999988777654321       2110     012211111111237


Q ss_pred             CCccC-cHHHHHHHHHHhhc
Q 032159          104 WRPAI-TVKQILVGIQDLLD  122 (146)
Q Consensus       104 W~p~~-~l~~vl~~i~~ll~  122 (146)
                      |.|.. +|.+.|..|...|.
T Consensus       101 W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen  101 WRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CCCCCCcHHHHHHHHHHHHh
Confidence            99988 89999988887764

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=96.13  E-value=0.011  Score=42.19  Aligned_cols=86  Identities=22%  Similarity=0.331  Sum_probs=59.5

Q ss_pred             CCccEEEEEEcCCCCCCCC--CCEE---EEEEEeCCCCCCCCCeeeeccCcc---ccccCCC-----CcEEecCCCCCCC
Q 032159           37 VNLMIWECIIPGKTGTDWE--GGYF---PLTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNG  103 (146)
Q Consensus        37 ~~~~~w~~~i~gp~~tpy~--gg~f---~~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~-----G~icl~~l~~~~~  103 (146)
                      ..-..|.|.+.+....+=+  +|+.   .+.|.|+.+||..+|.|.++.+.|   +||+...     ..+|+---.-. .
T Consensus        28 ~~~~~~~V~l~~~~~~~~~~~~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~-e  106 (162)
T PF14457_consen   28 WDEVEWIVELPTRDRVPGESPVGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWS-E  106 (162)
T ss_pred             ccceEEEEEecCcccccCCCCCCccccceEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHH-H
Confidence            3334666666652222222  2333   367889999999999888776544   5777654     67998765543 7


Q ss_pred             CCccCcHHHHHHHHHHhhcC
Q 032159          104 WRPAITVKQILVGIQDLLDQ  123 (146)
Q Consensus       104 W~p~~~l~~vl~~i~~ll~~  123 (146)
                      |.+..++..+|..|...|.+
T Consensus       107 ~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen  107 WRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             hhhccCHHHHHHHHHHHHHH
Confidence            99999999999999998843

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=96.12  E-value=0.18  Score=32.66  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             CCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159           55 EGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus        55 ~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      ..-.+.+.+.+|++||..+|.+.+.+
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEEC
Confidence            34568899999999999999998765

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=91.77  E-value=0.36  Score=37.72  Aligned_cols=86  Identities=20%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      ..++|.+|+.++..+....+.  . +    +++...++++.   ++-   ....++|.++.+||.++|.+...-++ ...
T Consensus       100 ~ys~ll~EIe~IGW~kl~~i~--~-d----~~ls~i~l~~~---D~~---R~H~l~l~l~~~yp~~~p~~~~~~P~-~~~  165 (291)
T PF09765_consen  100 YYSNLLKEIEAIGWDKLVQIQ--F-D----DDLSTIKLKIF---DSS---RQHYLELKLPSNYPFEPPSCSLDLPI-PFS  165 (291)
T ss_dssp             GC-CHHHHHHHHHCGCCEEEE--E------CCCSEEEEEEE---TTC---EEEEEEEETTTTTTTSEEEECS-TTS--HH
T ss_pred             HHHHHHHHHHHhccccceEEe--c-C----CCccEEEEEEE---cCC---ceEEEEEEECCCCCCCCceeeCCCCc-chh
Confidence            356788899988666543332  1 2    68888888887   221   58889999999999999986554332 111


Q ss_pred             cCCCCcEEecCCCCCCCCCc-cCcHHHHHHHHHHhh
Q 032159           87 VYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLL  121 (146)
Q Consensus        87 V~~~G~icl~~l~~~~~W~p-~~~l~~vl~~i~~ll  121 (146)
                                   .  .|.+ ..++.+++...+..+
T Consensus       166 -------------~--~w~~~~ssL~~v~~qF~~~l  186 (291)
T PF09765_consen  166 -------------L--SWSPSQSSLKDVVQQFQEAL  186 (291)
T ss_dssp             -------------H--HHHCHT-SHHHHHHHHHHHH
T ss_pred             -------------h--hhcccccCHHHHHHHHHHHH
Confidence                         1  4887 668888877666555

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.50  E-value=2.2  Score=37.58  Aligned_cols=67  Identities=13%  Similarity=0.112  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCE-EEEEEEeCCCCCCC-CCeeeeccC
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY-FPLTLYFSEDYPSK-PPKCKFPQG   81 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~-f~~~i~fp~~YP~~-pP~v~f~t~   81 (146)
                      +-|..|+.-|- ..-.++.++-.+    ..-..-.+++.||--.. .|.+ .++.|.||.+||.+ +|+++|..+
T Consensus       423 QnLgeE~S~Ig-~k~~nV~fEkid----va~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~  491 (1081)
T KOG0309|consen  423 QNLGEEFSLIG-VKIRNVNFEKID----VADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP  491 (1081)
T ss_pred             hhHHhHHhHhh-ccccccceEeec----cccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence            44666666553 233344444222    23334566777654332 3434 47889999999986 799999753

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=87.94  E-value=2.6  Score=31.42  Aligned_cols=63  Identities=25%  Similarity=0.370  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHcCCCCe-EEeecCCCCCCCccEEEEEEcCCCCC--CCCCCEEEEEEEeCCCCCCCCCeeee
Q 032159            9 GRLTEERKAWRKNHPHGF-VAKPETKDGSVNLMIWECIIPGKTGT--DWEGGYFPLTLYFSEDYPSKPPKCKF   78 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~-~~~~~~~~~~~~~~~w~~~i~gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f   78 (146)
                      .-..+|+..|...-+... .+.-      .+...+.++|.-..+.  -|.| .+.+.+.++++||..+|-+.+
T Consensus         5 EeQe~E~EaLeSIY~de~~~i~~------~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~   70 (215)
T KOG4018|consen    5 EEQEEELEALESIYPDEFKHINS------EDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA   70 (215)
T ss_pred             HHHHHHHHHHHHhccchhhhhhc------cCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence            344566666655433333 2211      2333356666632222  2333 788999999999999999943

>PF14460 Prok-E2_D: Prokaryotic E2 family D

Probab=81.09  E-value=1.7  Score=31.36  Aligned_cols=38  Identities=26%  Similarity=0.472  Sum_probs=23.7

Q ss_pred             ccCccc---cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhh
Q 032159           79 PQGFFH---PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL  121 (146)
Q Consensus        79 ~t~i~H---pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll  121 (146)
                      .|++||   +||+.+|+||+....-     |......-+..+...|
T Consensus        89 ~T~Ly~aPf~NV~~~g~vC~G~~~~-----P~~~~~~~i~~we~~F  129 (175)
T PF14460_consen   89 DTPLYHAPFFNVYSNGSVCWGNNSL-----PKISTLASIEAWEDAF  129 (175)
T ss_pred             CCeeEeCCccccCCCCcEeeCCCcC-----CCccCHHHHHHHHHHH
Confidence            456776   5999999999997543     3343333455554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		4e-51
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		5e-51
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		5e-51
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		6e-51
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		8e-51
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		1e-50
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		4e-50
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		5e-50
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		6e-50
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		6e-50
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		9e-50
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		1e-49
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		2e-47
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		2e-47
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		2e-47
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		9e-26
1jas_A	152	Hsubc2b Length = 152		2e-25
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		3e-25
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		4e-25
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-24
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		3e-20
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		4e-20
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		5e-20
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		5e-20
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		5e-20
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		1e-19
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-19
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-19
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		8e-19
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		1e-18
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		3e-18
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		3e-18
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-18
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		3e-18
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		5e-18
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		5e-18
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-18
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		5e-18
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		5e-18
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		5e-18
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		6e-18
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		7e-18
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		1e-17
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-17
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-17
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		1e-17
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		2e-17
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		2e-17
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		2e-17
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		3e-17
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-17
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		6e-17
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		7e-17
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		8e-17
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		9e-17
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		1e-16
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		1e-16
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		1e-16
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-16
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		2e-16
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-16
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		2e-16
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		3e-16
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		3e-16
3jvz_A	146	E2~ubiquitin-Hect Length = 146		1e-15
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-15
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-15
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-15
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-15
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-15
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		5e-15
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		5e-15
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		5e-15
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-14
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		1e-14
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-14
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		3e-14
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		6e-14
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		1e-13
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		2e-13
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		1e-12
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		1e-12
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		1e-12
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		4e-12
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		4e-12
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-11
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		3e-11
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		4e-11
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		2e-10
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		4e-09
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		1e-08
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		2e-08
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		6e-08
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		6e-08
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-07
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		1e-07
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		2e-07
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-07
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		2e-07
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		7e-07
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		7e-07
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		1e-06
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		1e-06
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		2e-06
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-06
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		3e-06
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		3e-06

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score =  196 bits (498), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 1   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+L
Sbjct: 61  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 120
Query: 121 LDQPNPADPAQTDGYQLFIQ 140
           L++PN  DPAQ + Y ++ Q
Sbjct: 121 LNEPNIQDPAQAEAYTIYCQ 140

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score =  196 bits (497), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           ++  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F
Sbjct: 1   LNMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 60
Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
            L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+
Sbjct: 61  KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 120
Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
           LL++PN  DPAQ + Y ++ Q
Sbjct: 121 LLNEPNIQDPAQAEAYTIYCQ 141

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score =  196 bits (497), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 2   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+L
Sbjct: 62  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 121 LDQPNPADPAQTDGYQLFIQ 140
           L++PN  DPAQ + Y ++ Q
Sbjct: 122 LNEPNIQDPAQAEAYTIYCQ 141

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score =  195 bits (496), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 5   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+L
Sbjct: 65  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 124
Query: 121 LDQPNPADPAQTDGYQLFIQ 140
           L++PN  DPAQ + Y ++ Q
Sbjct: 125 LNEPNIQDPAQAEAYTIYCQ 144

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score =  195 bits (495), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score =  194 bits (494), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 106/138 (76%), Gaps = 1/138 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 125 EPNIQDPAQAEAYTIYCQ 142

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score =  192 bits (489), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN   PAQ + Y ++ Q
Sbjct: 125 EPNIQSPAQAEAYTIYCQ 142

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score =  192 bits (489), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHP VYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 125 EPNIQDPAQAEAYTIYCQ 142

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score =  192 bits (488), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN   PAQ + Y ++ Q
Sbjct: 125 EPNIQAPAQAEAYTIYCQ 142

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score =  192 bits (487), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNV PSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 125 EPNIQDPAQAEAYTIYCQ 142

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score =  191 bits (486), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYCQ 139

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score =  191 bits (485), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  DPAQ + Y ++ Q
Sbjct: 122 EPNIQDPAQAEAYTIYXQ 139

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S   +   RL EERK WRK+HP GF AKP  K DGS++L  WE  IPGK GT+W GG +P
Sbjct: 2   SMSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           +T+ +  +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED  WRPAIT+KQI++G+QDL
Sbjct: 62  ITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDL 121
Query: 121 LDQPNPADPAQTDGYQLF 138
           LD PNP  PAQ   ++ F
Sbjct: 122 LDSPNPNSPAQEPAWRSF 139

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 105/136 (77%), Gaps = 1/136 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
             + + RL EERK WR++HP GF AKP ++ DG ++LM W+  IPGK  T WEGG + LT
Sbjct: 8   SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F E+YP++PPKC+F    FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQDLLD
Sbjct: 68  MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 127
Query: 123 QPNPADPAQTDGYQLF 138
            PN A PAQT+ Y +F
Sbjct: 128 DPNIASPAQTEAYTMF 143

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 102/130 (78%), Gaps = 1/130 (0%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED 68
           RL EERK WRK+HP GF AKP  K DGS++L  WE  IPGK GT+W GG +P+T+ +  +
Sbjct: 8   RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 69  YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           YPSKPPK KFP GF+HPNVYPSGT+CLSILNED  WRPAIT+KQI++G+QDLLD PNP  
Sbjct: 68  YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNS 127
Query: 129 PAQTDGYQLF 138
           PAQ   ++ F
Sbjct: 128 PAQEPAWRSF 137

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  112 bits (279), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G    P+      N+M+W  +I G   T W+GG F L+L FS
Sbjct: 5   ARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           EDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  IL  IQ LL  PNP
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNP 118
Query: 127 ADPAQTDGYQLF 138
             PA ++  +++
Sbjct: 119 NSPANSEAARMY 130

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FS
Sbjct: 5   ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP
Sbjct: 61  EEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNP 118
Query: 127 ADPAQTDGYQLF 138
             PA +   QL+
Sbjct: 119 NSPANSQAAQLY 130

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +R RL  + K  +++ P G    P T+D   N++ WE II G   T +E G F L+L F+
Sbjct: 5   SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP
Sbjct: 61  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPNP 118
Query: 127 ADPAQTDGYQLF 138
             PA +   QL+
Sbjct: 119 NSPANSLAAQLY 130

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 77/132 (58%), Gaps = 6/132 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +R RL  + K  +++ P G    P T+D   N++ WE II G   T +E G F L+L F+
Sbjct: 8   SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP
Sbjct: 64  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPNP 121
Query: 127 ADPAQTDGYQLF 138
             PA +   QL+
Sbjct: 122 NSPANSLAAQLY 133

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F 
Sbjct: 5   ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNP
Sbjct: 61  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ--NRWTPTYDVASILTSIQSLFNDPNP 118
Query: 127 ADPAQTDGYQLF 138
           A PA  +   LF
Sbjct: 119 ASPANVEAATLF 130

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 14/139 (10%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F   L F 
Sbjct: 5   AQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEFP 61
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILV 115
           +DYP  PPK  F     HPN+YP+G VC+SIL+            +  W P  +V++IL+
Sbjct: 62  KDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL 121
Query: 116 GIQDLLDQPNPADPAQTDG 134
            +  +L +PN    A  D 
Sbjct: 122 SVMSMLSEPNIESGANIDA 140

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 1   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 57
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
            F  DYP  PPK +F    FHPN+YP G VC+SIL           +    W P  +V++
Sbjct: 58  SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 117
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQL 137
           IL+ +  +L +PN    A  D  ++
Sbjct: 118 ILLSVVSMLAEPNDESGANVDASKM 142

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 5   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 61
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
            F  DYP  PPK +F    FHPN+YP G VC+SIL           +    W P  +V++
Sbjct: 62  SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 121
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQL 137
           IL+ +  +L +PN    A  D  ++
Sbjct: 122 ILLSVVSMLAEPNDESGANVDASKM 146

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 7   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 63
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
            F  DYP  PPK +F    FHPN+YP G VC+SIL           +    W P  +V++
Sbjct: 64  SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 123
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQL 137
           IL+ +  +L +PN    A  D  ++
Sbjct: 124 ILLSVVSMLAEPNDESGANVDASKM 148

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 4   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 60
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
            F  DYP  PPK +F    FHPN+YP G VC+SIL           +    W P  +V++
Sbjct: 61  SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 120
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQL 137
           IL+ +  +L +PN    A  D  ++
Sbjct: 121 ILLSVVSMLAEPNDESGANVDASKM 145

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTV 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLF 138
           PNP DP   D  Q++
Sbjct: 115 PNPDDPLVPDIAQIY 129

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E +  +++ P    A P   D    L  W+  I G + + ++GG F LT+
Sbjct: 4   GSMALKRIQKELQDLQRDPPAQCSAGPVGDD----LFHWQATIMGPSDSPYQGGVFFLTI 59
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++L+ I  LL  
Sbjct: 60  HFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCD 117
Query: 124 PNPADPAQTDGYQLF 138
           PNP DP   D   ++
Sbjct: 118 PNPDDPLVPDIAHIY 132

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Query: 1   MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
           MSG    G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++G
Sbjct: 10  MSGLVPRGSMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQG 65
Query: 57  GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
           G F LT++F  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++L+ 
Sbjct: 66  GVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLS 123
Query: 117 IQDLLDQPNPADPAQTDGYQLF 138
           I  LL  PNP DP   D  Q++
Sbjct: 124 ICSLLCDPNPDDPLVPDIAQIY 145

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 89.0 bits (219), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT++F
Sbjct: 7   MALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTVHF 62
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++L+ I  LL  PN
Sbjct: 63  PTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCDPN 120
Query: 126 PADPAQTDGYQLF 138
           P DP   D  Q++
Sbjct: 121 PDDPLVPDIAQIY 133

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+  E     K+ P    A P   D    L  W+  I G   + + GG F L+++F
Sbjct: 1   MALKRINRELADLGKDPPSSSSAGPVGDD----LFHWQATIMGPADSPYAGGVFFLSIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSISSLLTDPN 114
Query: 126 PADP 129
           P DP
Sbjct: 115 PDDP 118

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
           PNP DP
Sbjct: 115 PNPDDP 120

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 4   GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 59
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 60  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 117
Query: 124 PNPADP 129
           PNP DP
Sbjct: 118 PNPDDP 123

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 1   MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
           MSG    G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++G
Sbjct: 10  MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQG 65
Query: 57  GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
           G F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ 
Sbjct: 66  GVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLS 123
Query: 117 IQDLLDQPNPADP 129
           I  LL  PNP DP
Sbjct: 124 ICSLLCDPNPDDP 136

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
           PNP DP
Sbjct: 115 PNPDDP 120

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT
Sbjct: 4   SGSMALKRIQKELSDLQRDPPAHCRAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLT 59
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP KPPK  F    +HPN+  +G++ L IL     W PA+TV ++L+ I  LL 
Sbjct: 60  VHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ--WSPALTVSKVLLSICSLLC 117
Query: 123 QPNPADPAQTDGYQLF 138
            PNP DP   D  Q++
Sbjct: 118 DPNPDDPLVPDIAQIY 133

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P  +    N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E YP +PPK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  P
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSP 113
Query: 125 NPADPAQTDGYQLFIQ 140
            P DP  +   + F Q
Sbjct: 114 EPDDPLDSKVAEHFKQ 129

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WGPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
           PNP DP
Sbjct: 115 PNPDDP 120

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P  +    N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E YP +PPK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  P
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSP 113
Query: 125 NPADPAQTDGYQLFIQ 140
            P DP  +   + F Q
Sbjct: 114 EPDDPLDSKVAEHFKQ 129

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +   ++ P    A P   D    L  W+  I G   + ++GG F LT
Sbjct: 1   GSHMALKRIQKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPESPYQGGVFFLT 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+T+ ++L+ I  LL 
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLC 114
Query: 123 QPNPADP 129
            PNP DP
Sbjct: 115 DPNPDDP 121

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     K+ P    A P   D    +  W+  I G   + + GG F L ++F 
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDD----MFHWQATIMGPEDSPYSGGVFFLNIHFP 77
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+   G +CL IL +   W PA+T+ ++L+ I  LL  PNP
Sbjct: 78  SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ--WSPALTISKVLLSISSLLTDPNP 135
Query: 127 ADP 129
            DP
Sbjct: 136 DDP 138

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++
Sbjct: 2   GSALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIH 57
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
           F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  P
Sbjct: 58  FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDP 115
Query: 125 NPADP 129
           NP DP
Sbjct: 116 NPDDP 120

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 9   NSMALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+T+ ++L+ I  LL  
Sbjct: 65  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLCD 122
Query: 124 PNPADP 129
           PNP DP
Sbjct: 123 PNPDDP 128

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 9   NSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 65  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 122
Query: 124 PNPADP 129
           PNP DP
Sbjct: 123 PNPDDP 128

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL  L     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
           PNP DP
Sbjct: 115 PNPDDP 120

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+    G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATAMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
           PNP DP
Sbjct: 115 PNPDDP 120

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 9   MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 64
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PN
Sbjct: 65  PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPN 122
Query: 126 PADP 129
           P DP
Sbjct: 123 PDDP 126

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F 
Sbjct: 1   ALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+  +G++CL IL   + W PA+T+ ++L+ I  LL  PNP
Sbjct: 57  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLCDPNP 114
Query: 127 ADP 129
            DP
Sbjct: 115 DDP 117

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL   + W PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLCDPN 114
Query: 126 PADP 129
           P DP
Sbjct: 115 PDDP 118

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++ L IL   + W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALTISKVLLSICSLLCD 114
Query: 124 PNPADP 129
           PNP DP
Sbjct: 115 PNPDDP 120

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT
Sbjct: 1   AGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLT 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP KPPK  F    +HPN+  +G++ L IL     W PA+T+ ++L+ I  LL 
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALTISKVLLSICSLLC 114
Query: 123 QPNPADP 129
            PNP DP
Sbjct: 115 DPNPDDP 121

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 1   MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
           MSG    G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++G
Sbjct: 10  MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQG 65
Query: 57  GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
           G F LT++F  DYP KPPK  F    +HPN+  +G++ L IL     W PA+T+ ++L+ 
Sbjct: 66  GVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ--WSPALTISKVLLS 123
Query: 117 IQDLLDQPNPADP 129
           I  LL  PNP DP
Sbjct: 124 ICSLLCDPNPDDP 136

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           S  G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L
Sbjct: 5   SMAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKL 59
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
            L+  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL
Sbjct: 60  ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALL 117
Query: 122 DQPNPADPAQTD 133
             PNP DP   D
Sbjct: 118 SAPNPDDPLAND 129

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLS 96
           N   W   I G  GT +EGG+F L +    DYP  PPK KF    +HPN+   +G +CL 
Sbjct: 51  NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 97  ILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146
           +L   N W PA+T++  L+ IQ LL  P P DP   +  +++ +    F+
Sbjct: 111 VLK--NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFV 158

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
             G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L 
Sbjct: 3   SAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLE 57
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL 
Sbjct: 58  LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLS 115
Query: 123 QPNPADPAQTD 133
            PNP DP   D
Sbjct: 116 APNPDDPLAND 126

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L
Sbjct: 2   AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +  E+YP   PK +F    +HPNV   G +CL IL   + W PA+ ++ +L+ IQ LL  
Sbjct: 57  FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK--DKWSPALQIRTVLLSIQALLSA 114
Query: 124 PNPADPAQTD 133
           PNP DP   D
Sbjct: 115 PNPDDPLAND 124

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L
Sbjct: 5   AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 59
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  
Sbjct: 60  FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSA 117
Query: 124 PNPADPAQTD 133
           PNP DP   D
Sbjct: 118 PNPDDPLAND 127

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
              +A  R+ +E +  +++ P    A P   D    +  W   I G   + ++GG F L 
Sbjct: 1   SAAMAMRRIQKELREIQQDPPCNCSAGPVGDD----IFHWTATITGPDDSPYQGGLFFLD 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP K P+  F    +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL 
Sbjct: 57  VHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQ--WSPALTLSRVLLSISSLLT 114
Query: 123 QPNPADP 129
            PNP+DP
Sbjct: 115 DPNPSDP 121

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++ L IL   + W PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALTISKVLLSICSLLCDPN 114
Query: 126 PADP 129
           P DP
Sbjct: 115 PDDP 118

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L+
Sbjct: 1   GLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E+YP   PK +F    +HPNV   G +CL IL   + W PA+ ++ +L+ IQ LL  P
Sbjct: 56  LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK--DKWSPALQIRTVLLSIQALLSAP 113
Query: 125 NPADPAQTD 133
           NP DP   D
Sbjct: 114 NPDDPLAND 122

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G  +  R+ +E      + P    A P+      N+  W   I G  G+ +EGG F L +
Sbjct: 1   GSTSAKRIQKELAEITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
            FS DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL  
Sbjct: 57  TFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTD 114
Query: 124 PNPADP 129
            NPADP
Sbjct: 115 CNPADP 120

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HPN+   G +CL +L     W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 63  PMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQ 140
              D  + +I+
Sbjct: 121 LANDVAEDWIK 131

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 9   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HPN+   G +CL +L     W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 65  PMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 122
Query: 130 AQTDGYQLFIQ 140
              D  + +I+
Sbjct: 123 LANDVAEDWIK 133

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +  R+ +E     ++ P    A P   D    L  W+  I G   + + GG F L+++F 
Sbjct: 3   SSKRIAKELSDLERDPPTSCSAGPVGDD----LYHWQASIMGPADSPYAGGVFFLSIHFP 58
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL   NP
Sbjct: 59  TDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANP 116
Query: 127 ADP 129
            DP
Sbjct: 117 DDP 119

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
           W   I G  GT +EGG+F L +    DYP  PPK KF    +HPN+   +G +CL IL  
Sbjct: 77  WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKH 136
Query: 101 DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI 146
           +  W PA+T++  L+ IQ +L  P P DP   +  ++ I+    F+
Sbjct: 137 E--WSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFV 180

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F 
Sbjct: 1   ASKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+  +G++ L IL   + W PA+ + ++L+ I  LL  PNP
Sbjct: 57  TDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALKISKVLLSICSLLCDPNP 114
Query: 127 ADP 129
            DP
Sbjct: 115 DDP 117

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE- 100
           WE ++ G   T +EGG+F   L F  DYP KPPK KF    +HPN+   G VC+SIL++ 
Sbjct: 36  WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDP 95
Query: 101 ----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQL 137
                     +  W P  TV+ IL+ +  +L  PN   PA  D  ++
Sbjct: 96  GDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKM 142

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 4   GGIARGRLTEERK--AWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           G + RG L   R+     KN   GF A     +   +L  WE +I G   T +EGG F  
Sbjct: 13  GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKA 69
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITV 110
            L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV
Sbjct: 70  HLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTV 129
Query: 111 KQILVGIQDLLDQPNPADPAQTDGYQ 136
           + I++ +  +L  PN   PA  D  +
Sbjct: 130 ETIMISVISMLADPNGDSPANVDAAK 155

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           N+  W   I G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL I
Sbjct: 76  NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 98  LNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           L ++  W PA+T+ ++L+ I  LL   NPADP
Sbjct: 136 LKDN--WSPALTISKVLLSICSLLTDCNPADP 165

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRIHKELNDLARDPPAQCRAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HP +  +G++ L IL   + W PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPAINSNGSISLDILR--SQWSPALTISKVLLSICSLLCDPN 114
Query: 126 PADP 129
           P DP
Sbjct: 115 PDDP 118

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HPN+   G + L +L     W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 63  PMEAPKVRFLTKIYHPNIDRLGRISLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQ 140
              D  + +I+
Sbjct: 121 LANDVAEDWIK 131

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           +L  WE  I G   T +EGGYF   L F  DYP  PP  +F    +HPN+Y +G VC+SI
Sbjct: 33  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 98  LN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 138
           L+               W P   V+ IL+ +  LL++PN   PA  D   ++
Sbjct: 93  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           +L  WE  I G   T +EGGYF   L F  DYP  PP  +F    +HPN+Y +G VC+SI
Sbjct: 36  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 98  LN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 138
           L+               W P   V+ IL+ +  LL++PN   PA  D   ++
Sbjct: 96  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +    +   G  A P   DG  NL  W   + G   T +E   + LTL F  DY
Sbjct: 13  RLQQELRTLLMSGDPGITAFP---DGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +Q LL +PN A P
Sbjct: 69  PYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASP 126

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRP 106
           G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL   N W P
Sbjct: 41  GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR--NAWSP 98
Query: 107 AITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
            IT+K  L+ +Q LL  P P DP   +  Q +++
Sbjct: 99  VITLKSALISLQALLQSPEPNDPQDAEVAQHYLR 132

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRP 106
           G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL   N W P
Sbjct: 40  GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSP 97
Query: 107 AITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
            IT+K  L+ +Q LL  P P DP   +  Q +++
Sbjct: 98  VITLKSALISLQALLQSPEPNDPQDAEVAQHYLR 131

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HP +   G + L +L     W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 63  PMEAPKVRFLTKIYHPAIDRLGRISLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQ 140
              D  + +I+
Sbjct: 121 LANDVAEDWIK 131

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 19  RKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF 78
           ++N+  G  AKP ++D    +M WE  I G   + W+G  F LT++F+ +Y   PP  KF
Sbjct: 36  KENNYKGITAKPVSED----MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKF 91
Query: 79  PQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQL 137
               FHPNV P +G  C+  L+    W    T+  IL+ +Q +L  P   +P   +  ++
Sbjct: 92  ITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARI 151
Query: 138 FIQ 140
            ++
Sbjct: 152 LVK 154

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 3   GGGIARG----RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY 58
            GG ARG    RL +E      +   G  A PE    S NL  W   I G  GT +E   
Sbjct: 23  SGGAARGPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLR 78
Query: 59  FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQ 118
           + L+L F   YP   P  KF    +HPNV   G + L IL E   W     V+ IL+ IQ
Sbjct: 79  YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVRTILLSIQ 136
Query: 119 DLLDQPNPADPAQTDGYQL 137
            LL +PN   P  T   +L
Sbjct: 137 SLLGEPNIDSPLNTHAAEL 155

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNG 103
           I G   T +E G F L +   E YP +PP+ +F    +HPN+  +G +CL +L       
Sbjct: 40  ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA 99
Query: 104 WRPAITVKQILVGIQDLLDQPNPADPAQTD 133
           WRP++ +  +L  IQ L+ +PNP DP   D
Sbjct: 100 WRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 23  PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82
           P G    P  +D    L   +  I G  GT + GG F + L   +D+P+ PPK  F    
Sbjct: 30  PDGIKVFPNEED----LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85
Query: 83  FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
           FHPNV  +G +C+++L  D  W   + ++ +L+ I+ LL  PNP      +  +L ++
Sbjct: 86  FHPNVGANGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLE 141

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 25  GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84
             +  P++ D S +  +   + P +   ++  G     L F+E YP +PPK    +  FH
Sbjct: 50  NVITSPDSADRSQSPKLEVIVRPDEGYYNY--GSINFNLDFNEVYPIEPPKVVCLKKIFH 107
Query: 85  PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
           PN+   G VCL+IL ED  W PA+ ++ I+ G+  L  +PNP DP   D  +L  +
Sbjct: 108 PNIDLKGNVCLNILRED--WSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCE 161

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
           ++ G F  +    + YP  PPK K     +HPN+   G VCL+IL ED  W+P +T+  I
Sbjct: 48  YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILRED--WKPVLTINSI 105
Query: 114 LVGIQDLLDQPNPADPAQTDGYQLF 138
           + G+Q L  +PNP DP   +  ++ 
Sbjct: 106 IYGLQYLFLEPNPEDPLNKEAAEVL 130

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWE-CIIPGKTGTDWEGGYFPL 61
           G   A  RL +E +  RK     F      +    NL+ W+  I+P      ++ G F +
Sbjct: 1   GSMAASRRLMKELEEIRKCGMKNFR---NIQVDEANLLTWQGLIVPD--NPPYDKGAFRI 55
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
            + F  +YP KPPK  F    +HPN+   G VCL +++ +N W+PA    Q++  +  L+
Sbjct: 56  EINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIALV 114
Query: 122 DQPNPADPAQTD 133
           + P P  P + D
Sbjct: 115 NDPQPEHPLRAD 126

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWE-CIIPGKTGTDWEGGYF 59
           M+        L E RK   KN  +  V          NL+ W+  I+P      ++ G F
Sbjct: 1   MAASRRLMKELEEIRKCGMKNFRNIQV-------DEANLLTWQGLIVPD--NPPYDKGAF 51
Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
            + + F  +YP KPPK  F    +HPN+   G VCL +++ +N W+PA    Q++  +  
Sbjct: 52  RIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIA 110
Query: 120 LLDQPNPADPAQTD 133
           L++ P P  P + D
Sbjct: 111 LVNDPQPEHPLRAD 124

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +  +K  P  ++    + D   N+++W  ++       +    F L 
Sbjct: 1   GSHMASMRVVKELEDLQKKPP-PYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLR 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F  +YP KPP  KF    +HPNV  +G +CL I++ +N W+P     Q+L  +  L++
Sbjct: 57  ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVN 115
Query: 123 QPNPADPAQTDGYQLFIQ 140
           +PN  +P + D   L  Q
Sbjct: 116 RPNIREPLRMDLADLLTQ 133

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
           ++ G F  +    + YP  PPK K     +HPN+   G V L+IL ED  W+P +T+  I
Sbjct: 68  YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED--WKPVLTINSI 125
Query: 114 LVGIQDLLDQPNPADPAQTDGYQLF 138
           + G+Q L  +PNP DP   +  ++ 
Sbjct: 126 IYGLQYLFLEPNPEDPLNKEAAEVL 150

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E +  +K  P  ++    + D   N+++W  ++       +    F L + F
Sbjct: 1   MASMRVVKELEDLQKKPP-PYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLRISF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             +YP KPP  KF    +HPNV  +G +CL I++ +N W+P     Q+L  +  L+++PN
Sbjct: 57  PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVNRPN 115
Query: 126 PADPAQTDGYQLFIQ 140
             +P + D   L  Q
Sbjct: 116 IREPLRMDLADLLTQ 130

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 8   RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSE 67
           + RL +E  A + + P G     ++   S+    W   + G  GT +EG  F L   FS 
Sbjct: 24  QKRLQKELLALQNDPPPGMTLNEKSVQNSITQ--WIVDMEGAPGTLYEGEKFQLLFKFSS 81
Query: 68  DYPSKPPKCKFPQGFF--HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
            YP   P+  F       HP+VY +G +CLSIL ED  W PA++V+ + + I  +L 
Sbjct: 82  RYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPALSVQSVCLSIISMLS 136

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
           ++ +  G  GT +EGG + + +   +DYP   P   F     HPNV   SG+VCL ++N+
Sbjct: 31  FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 101 DNGWRPAITVKQIL-VGIQDLLDQPNPADPAQTDGYQLFIQ 140
              W P  ++  +  V +  LL  PNP+DP  +D   L ++
Sbjct: 91  --TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMK 129

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 39  LMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTV 93
           L I + +I G   T +  G F   +YF +DYPS PP             F+PN+Y  G V
Sbjct: 109 LDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKV 168
Query: 94  CLSILNE-----DNGWRPAI-TVKQILVGIQDLL 121
           CLSILN      +  W P   +  Q+LV +Q L+
Sbjct: 169 CLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLI 202

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 60/146 (41%), Gaps = 22/146 (15%)
Query: 1   MSGGGIARGRLTEER------KAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDW 54
           MSG G  R     E        + RK +P   VA+            W     G  GT +
Sbjct: 5   MSGAGNLRSNRRREMDYMRLCNSTRKVYPSDTVAE-----------FW-VEFKGPEGTPY 52
Query: 55  EGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQI 113
           E G + L +    DYP K P   F     HPNV   SG+VCL ++N+   W P   ++ I
Sbjct: 53  EDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ--TWTPMYQLENI 110
Query: 114 L-VGIQDLLDQPNPADPAQTDGYQLF 138
             V +  LL  PNP+DP       L 
Sbjct: 111 FDVFLPQLLRYPNPSDPLNVQAAHLL 136

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRP 106
           G  GT +EGG + + +   + YP K P   F    FHPN+   SGTVCL ++N+   W  
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTA 116
Query: 107 AITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQ 140
              +  I    +  LL  PNP DP   D   +++ 
Sbjct: 117 LYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLH 151

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 11  LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
           L E  +  + N   G     E+ D  + L  W C I G+ GT +E   + LT++  ++YP
Sbjct: 31  LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 89
Query: 71  SKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADP 129
             PP  KF        V   G V  + L+    W    T++ IL+ + Q++L   N   P
Sbjct: 90  DSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 149
Query: 130 AQTDG 134
              +G
Sbjct: 150 QPNEG 154

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 11  LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
           L E  +  + N   G     E+ D  + L  W C I G+ GT +E   + LT++  ++YP
Sbjct: 27  LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 85
Query: 71  SKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADP 129
             PP  KF        V   G V  + L+    W    T++ IL+ + Q++L   N   P
Sbjct: 86  DSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 145
Query: 130 AQTDG 134
              +G
Sbjct: 146 QPNEG 150

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 8/132 (6%)
Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECI--IPGKTGTDWEGGY 58
           M+   IA  R+  E K   K+      +K + K   V+    E    I G   T +EGG 
Sbjct: 3   MAMANIAVQRIKREFKEVLKSEE---TSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGR 59
Query: 59  FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGI 117
           + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +
Sbjct: 60  YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSL 117
Query: 118 QDLLDQPNPADP 129
           Q LL    P DP
Sbjct: 118 QALLAAAEPDDP 129

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W
Sbjct: 60  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 117
Query: 105 RPAITVKQILVGIQDLLDQPNPADP 129
             A+T++ +L+ +Q LL    P DP
Sbjct: 118 AAAMTLRTVLLSLQALLAAAEPDDP 142

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W
Sbjct: 45  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 102
Query: 105 RPAITVKQILVGIQDLLDQPNPADP 129
             A+T++ +L+ +Q LL    P DP
Sbjct: 103 AAAMTLRTVLLSLQALLAAAEPDDP 127

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W
Sbjct: 44  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 101
Query: 105 RPAITVKQILVGIQDLLDQPNPADP 129
             A+T++ +L+ +Q LL    P DP
Sbjct: 102 AAAMTLRTVLLSLQALLAAAEPDDP 126

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W
Sbjct: 96  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 153
Query: 105 RPAITVKQILVGIQDLLDQPNPADP 129
             A+T++ +L+ +Q LL    P DP
Sbjct: 154 AAAMTLRTVLLSLQALLAAAEPDDP 178

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 109
           ++GG F       + Y   PPK K     +HPN+  +G +CLS+L E +    GW P  T
Sbjct: 58  YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 110 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQ 140
           +K ++ G+  L  D  N  DP   +  +  ++
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLR 149

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 109
           ++GG F       + Y   PPK K     +HPN+  +G +CLS+L E +    GW P  T
Sbjct: 58  YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 110 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQ 140
           +K ++ G+  L  D  N  DP   +  +  ++
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLR 149

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 96  SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
           +IL  +  W P   +   +  +  LL +P    P   D
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVSDSPLDVD 142

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLS 96
           N+ IW     G   T +    + L + F +DYP KPP   F Q    H +VY +G +CLS
Sbjct: 34  NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLS 93
Query: 97  ILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +L +D  + P++++  +++ I  +L  
Sbjct: 94  LLGDD--YNPSLSISGLVLSIISMLSS 118

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF--PQGFFHPNVYPSGTVCL 95
           N++ W  ++ G   T +EGGY+   L F  ++P KPP      P G F  N      +CL
Sbjct: 42  NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT----RLCL 97
Query: 96  SILN-EDNGWRPAITVKQILVGIQDLLDQPNPA----DPAQTDGYQLFIQVL 142
           SI +   + W PA +V  IL G+   + +  P     + +     QL +Q L
Sbjct: 98  SITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSL 149

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   + KN P              N+ IW     G   T +    + + + 
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKII 74
Query: 65  FSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           F ++YP KPP   F Q    H +VY +G +CLS+L +D  + P++++  +++ I  +L  
Sbjct: 75  FPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD--YNPSLSISGLILSIISMLSS 132

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96  SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
           +IL  +  W P   +   +  +  LL +P    P   D
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVD 142

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96  SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
           +IL  +  W P   +   +  +  LL +P    P   D
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVD 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	2e-77
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	4e-75
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	3e-74
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	4e-67
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	1e-65
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	4e-65
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	4e-65
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	8e-64
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	2e-61
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	2e-50
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	2e-48
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	3e-48
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	3e-47
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-45
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	8e-45
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	8e-45
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	6e-44
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	5e-42
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-40
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	4e-40
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	6e-40
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	9e-40
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	9e-40
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	2e-39
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	3e-39
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	3e-39
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	5e-39
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	1e-38
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	2e-38
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-38
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	2e-38
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	3e-38
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	4e-38
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	7e-38
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-37
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	2e-37
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-37
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	3e-36
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	6e-36
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	8e-36
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	2e-35
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	2e-34
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-34
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	2e-33
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	3e-33
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	3e-33
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	4e-33
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	8e-33
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	2e-30
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	1e-28
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	3e-04

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  225 bits (576), Expect = 2e-77
 Identities = 86/141 (60%), Positives = 106/141 (75%), Gaps = 3/141 (2%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MS   +   RL EERK WRK+HP GF AKP +  DGS++L  WE  IPGK GT+W GG +
Sbjct: 1   MSS--LCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVY 58

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           P+T+ +  +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED  WRPAIT+KQI++G+QD
Sbjct: 59  PITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQD 118

Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
           LLD PNP  PAQ   ++ F +
Sbjct: 119 LLDSPNPNSPAQEPAWRSFSR 139

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  219 bits (561), Expect = 4e-75
 Identities = 85/141 (60%), Positives = 107/141 (75%), Gaps = 3/141 (2%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
            S   + + RL EERK WR++HP GF AKP ++ DG ++LM W+  IPGK  T WEGG +
Sbjct: 7   HSS--LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLY 64

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
            LT+ F E+YP++PPKC+F    FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQD
Sbjct: 65  KLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQD 124

Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
           LLD PN A PAQT+ Y +F +
Sbjct: 125 LLDDPNIASPAQTEAYTMFKK 145

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  217 bits (556), Expect = 3e-74
 Identities = 92/141 (65%), Positives = 107/141 (75%), Gaps = 3/141 (2%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSG  IA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F
Sbjct: 4   MSG--IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 61

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
            L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+
Sbjct: 62  KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 121

Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
           LL++PN   PAQ + Y ++ Q
Sbjct: 122 LLNEPNIQSPAQAEAYTIYCQ 142

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  199 bits (509), Expect = 4e-67
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 16/149 (10%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F 
Sbjct: 1   MSK--TAQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFN 55

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED-----------NGWRPAIT 109
             L F +DYP  PPK  F     HPN+YP+G VC+SIL+               W P  +
Sbjct: 56  AKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQS 115

Query: 110 VKQILVGIQDLLDQPNPADPAQTDGYQLF 138
           V++IL+ +  +L +PN    A  D   L+
Sbjct: 116 VEKILLSVMSMLSEPNIESGANIDACILW 144

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  196 bits (499), Expect = 1e-65
 Identities = 58/140 (41%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F 
Sbjct: 1   MST--PARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFR 54

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L L F E+YP+KPP  KF    FHPNVY +G +CL IL     W P   V  IL  IQ L
Sbjct: 55  LLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNR--WTPTYDVASILTSIQSL 112

Query: 121 LDQPNPADPAQTDGYQLFIQ 140
            + PNPA PA  +   LF  
Sbjct: 113 FNDPNPASPANVEAATLFKD 132

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  195 bits (497), Expect = 4e-65
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           M G   A   L  +    ++N+  G  AKP     S ++M WE  I G   + W+G  F 
Sbjct: 20  MHG--RAYLLLHRDFCDLKENNYKGITAKPV----SEDMMEWEVEIEGLQNSVWQGLVFQ 73

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           LT++F+ +Y   PP  KF    FHPNV P +G  C+  L+    W    T+  IL+ +Q 
Sbjct: 74  LTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQV 133

Query: 120 LLDQPNPADPAQTDGYQLFIQ 140
           +L  P   +P   +  ++ ++
Sbjct: 134 MLSNPVLENPVNLEAARILVK 154

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  194 bits (495), Expect = 4e-65
 Identities = 56/140 (40%), Positives = 77/140 (55%), Gaps = 8/140 (5%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    AR RL  + K  +++ P G    P+      N+M+W  +I G   T W+GG F 
Sbjct: 1   MST--PARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFK 54

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L+L FSEDYP+KPP  +F    FHPN+Y  G++CL IL     W P   V  IL  IQ L
Sbjct: 55  LSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSL 112

Query: 121 LDQPNPADPAQTDGYQLFIQ 140
           L  PNP  PA ++  +++ +
Sbjct: 113 LCDPNPNSPANSEAARMYSE 132

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  191 bits (487), Expect = 8e-64
 Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 14/147 (9%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L 
Sbjct: 2   GTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAILS 58

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED-----------NGWRPAITVKQI 113
           F  DYP  PPK +F    FHPN+YP G VC+SIL+               W P  +V++I
Sbjct: 59  FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 118

Query: 114 LVGIQDLLDQPNPADPAQTDGYQLFIQ 140
           L+ +  +L +PN    A  D  +++  
Sbjct: 119 LLSVVSMLAEPNDESGANVDASKMWRD 145

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  185 bits (471), Expect = 2e-61
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL +E +  +K +    V+        + L  W C I G+ GT +E   + LT++  
Sbjct: 22  RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPN 125
           ++YP  PP  KF        V   G V  + L+    W    T++ IL+ + Q++L   N
Sbjct: 82  DNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSAN 141

Query: 126 PADPAQTDGYQ 136
              P   +G  
Sbjct: 142 KRLPQPNEGEV 152

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  157 bits (400), Expect = 2e-50
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 14/143 (9%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           ++  L  E K  ++    GF      +    +L  WE  I G   T +EGGYF   L F 
Sbjct: 8   SQKALLLELKGLQEEPVEGFRVTLVDEG---DLYNWEVAIFGPPNTYYEGGYFKARLKFP 64

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILV 115
            DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+
Sbjct: 65  IDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 124

Query: 116 GIQDLLDQPNPADPAQTDGYQLF 138
            +  LL++PN   PA  D   ++
Sbjct: 125 SVISLLNEPNTFSPANVDASVMY 147

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  151 bits (383), Expect = 2e-48
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   + KN P              N+ IW     G   T +    + + + 
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKII 74

Query: 65  FSEDYPSKPPKCKF-PQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           F ++YP KPP   F  +   H +VY +G +CLS+L +D  + P++++  +++ I  +L  
Sbjct: 75  FPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD--YNPSLSISGLILSIISMLSS 132

Query: 124 PNP 126
              
Sbjct: 133 AKE 135

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  152 bits (386), Expect = 3e-48
 Identities = 48/143 (33%), Positives = 65/143 (45%), Gaps = 14/143 (9%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
               L  +     KN   GF A         +L  WE +I G   T +EGG F   L F 
Sbjct: 18  GSLLLRRQLAELNKNPVEGFSAGLI---DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFP 74

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILV 115
           +DYP +PPK KF    +HPNV  +G VC+SIL+E              W P  TV+ I++
Sbjct: 75  KDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMI 134

Query: 116 GIQDLLDQPNPADPAQTDGYQLF 138
            +  +L  PN   PA  D  + +
Sbjct: 135 SVISMLADPNGDSPANVDAAKEW 157

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  148 bits (376), Expect = 3e-47
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +   K       +        + +  W   I G   ++ E   + L++    +Y
Sbjct: 10  RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69

Query: 70  PSKPPKCKFPQGFFHPNVYPS-GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           P  PPK  F      P V P+ G V        + W+ A T++ +L+ ++  +  P    
Sbjct: 70  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRKEMATPANKK 128

Query: 129 PAQTDGYQLF 138
             Q    + F
Sbjct: 129 LRQPKEGETF 138

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  144 bits (365), Expect = 1e-45
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
            + RL +E  A + + P G     ++     ++  W   + G  GT +EG  F L   FS
Sbjct: 23  MQKRLQKELLALQNDPPPGMTLNEKSVQN--SITQWIVDMEGAPGTLYEGEKFQLLFKFS 80

Query: 67  EDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
             YP   P+  F       HP+VY +G +CLSIL ED  W PA++V+ + + I  +L
Sbjct: 81  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPALSVQSVCLSIISML 135

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  141 bits (359), Expect = 8e-45
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   +  N P              N+ IW     G   T +    + L + 
Sbjct: 5   GNANYRIQKELHNFLNNPPINCTLDVHPN----NIRIWIVKYVGLENTIYANEVYKLKII 60

Query: 65  FSEDYPSKPPKCKF-PQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           F +DYP KPP   F  +   H +VY +G +CLS+L +D  + P++++  +++ I  +L  
Sbjct: 61  FPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD--YNPSLSISGLVLSIISMLSS 118

Query: 124 PNPAD 128
                
Sbjct: 119 AKEKK 123

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  143 bits (362), Expect = 8e-45
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +   
Sbjct: 26  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 85

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNGWRPAITVKQILVGIQDLLD 122
             YP  PP  +F        V  S  V     +S+L +   W+ + ++K +L  ++ L+ 
Sbjct: 86  PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLMM 142

Query: 123 QPNPADPAQTDGYQLF 138
                   Q    Q +
Sbjct: 143 SKENMKLPQPPEGQCY 158

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  140 bits (356), Expect = 6e-44
 Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 1   MSGG---GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+          RL +E +    +   G  A P+      NL  W   + G   T +E  
Sbjct: 1   MTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGD----NLFKWVATLDGPKDTVYESL 56

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI 117
            + LTL F  DYP KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +
Sbjct: 57  KYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSL 114

Query: 118 QDLLDQPNPADPAQTDGYQLF 138
           Q LL +PN A P       ++
Sbjct: 115 QSLLGEPNNASPLNAQAADMW 135

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  136 bits (344), Expect = 5e-42
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +   
Sbjct: 36  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 95

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNGWRPAITVKQILVGIQDLLD 122
             YP  PP  +F        V  S  V     +S+L +   W+ + ++K +L  ++ L+ 
Sbjct: 96  PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLMM 152

Query: 123 QPNPADPAQTDGYQLF 138
                   Q    Q +
Sbjct: 153 SKENMKLPQPPEGQCY 168

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  132 bits (333), Expect = 3e-40
 Identities = 47/134 (35%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G    RL +E      +   G  A PE    S NL  W   I G  GT +E   + L+L 
Sbjct: 29  GPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLRYKLSLE 84

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
           F   YP   P  KF    +HPNV   G + L IL E   W     V+ IL+ IQ LL +P
Sbjct: 85  FPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVRTILLSIQSLLGEP 142

Query: 125 NPADPAQTDGYQLF 138
           N   P  T   +L+
Sbjct: 143 NIDSPLNTHAAELW 156

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  131 bits (331), Expect = 4e-40
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            + +E      + P G    P   +   +L   +  I G  GT + GG F + L   +D+
Sbjct: 17  LVYKEVTTLTADPPDGIKVFP---NEE-DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 72

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P+ PPK  F    FHPNV  +G +C+++L  D  W   + ++ +L+ I+ LL  PNP   
Sbjct: 73  PASPPKGYFLTKIFHPNVGANGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESA 130

Query: 130 AQTDGYQLF 138
              +  +L 
Sbjct: 131 LNEEAGRLL 139

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  130 bits (329), Expect = 6e-40
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +  +K  P              N+++W  ++       +    F L 
Sbjct: 1   GSHMASMRVVKELEDLQKKPPPYLRNLSSDDA---NVLVWHALL-LPDQPPYHLKAFNLR 56

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F  +YP KPP  KF    +HPNV  +G +CL I++ +N W+P     Q+L  +  L++
Sbjct: 57  ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVN 115

Query: 123 QPNPADPAQTDGYQLF 138
           +PN  +P + D   L 
Sbjct: 116 RPNIREPLRMDLADLL 131

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  130 bits (329), Expect = 9e-40
 Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 6/138 (4%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           +  G +A  R+ +E     ++ P    A P       ++  W+  I G   + ++GG F 
Sbjct: 14  VPRGSMALKRIHKELNDLARDPPAQCSAGPVGD----DMFHWQATIMGPNDSPYQGGVFF 69

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  L
Sbjct: 70  LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISKVLLSICSL 127

Query: 121 LDQPNPADPAQTDGYQLF 138
           L  PNP DP   +  +++
Sbjct: 128 LCDPNPDDPLVPEIARIY 145

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  130 bits (328), Expect = 9e-40
 Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +   ++ P    A P       +L  W+  I G   + ++GG F LT
Sbjct: 1   GSHMALKRIQKELQDLGRDPPAQCSAGPVGD----DLFHWQATIMGPPESPYQGGVFFLT 56

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL 
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISKVLLSICSLLC 114

Query: 123 QPNPADPAQTDGYQLF 138
            PNP DP   +  +++
Sbjct: 115 DPNPDDPLVPEIARIY 130

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  129 bits (326), Expect = 2e-39
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL +E +  RK     F      +    NL+ W+ +I       ++ G F + + F 
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEA---NLLTWQGLI-VPDNPPYDKGAFRIEINFP 58

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            +YP KPPK  F    +HPN+   G VCL +++ +N W+PA    Q++  +  L++ P P
Sbjct: 59  AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIALVNDPQP 117

Query: 127 ADPAQTDGYQLF 138
             P + D  + +
Sbjct: 118 EHPLRADLAEEY 129

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  135 bits (341), Expect = 3e-39
 Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P       ++  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGD----DMFHWQATIMGPNDSPYQGGVFFLTI 56

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++ L IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRS--QWSPALTISKVLLSICSLLCD 114

Query: 124 PNPADPAQTDGYQLFIQ 140
           PNP DP   +  +++  
Sbjct: 115 PNPDDPLVPEIARIYKT 131

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  128 bits (325), Expect = 3e-39
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     K+ P    A P       ++  W+  I G   + + GG F L ++F 
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGD----DMFHWQATIMGPEDSPYSGGVFFLNIHFP 77

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+   G +CL IL +   W PA+T+ ++L+ I  LL  PNP
Sbjct: 78  SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKD--QWSPALTISKVLLSISSLLTDPNP 135

Query: 127 ADPAQTDGYQLF 138
            DP   +   L+
Sbjct: 136 DDPLVPEIAHLY 147

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  128 bits (323), Expect = 5e-39
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           +G      R+ +E +        G  A+P+      N   +  +I G   + +EGG F L
Sbjct: 1   AGSAGLPRRIIKETQRLLAEPVPGIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKL 56

Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
            L+  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL
Sbjct: 57  ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALL 114

Query: 122 DQPNPADPAQTDGYQLF 138
             PNP DP   D  + +
Sbjct: 115 SAPNPDDPLANDVAEQW 131

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  127 bits (322), Expect = 1e-38
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL  E        P G        D    +      I G   T +E G F L +   
Sbjct: 5   RASRLKRELHMLATEPPPGITCWQ---DKD-QMDDLRAQILGGANTPYEKGVFKLEVIIP 60

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNGWRPAITVKQILVGIQDLLDQP 124
           E YP +PP+ +F    +HPN+  +G +CL +L       WRP++ +  +L  IQ L+ +P
Sbjct: 61  ERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120

Query: 125 NPADPAQTDGYQLF 138
           NP DP   D    F
Sbjct: 121 NPDDPLMADISSEF 134

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  127 bits (321), Expect = 2e-38
 Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 15/149 (10%)

Query: 1   MSGGGIARGRLTEERKAWRK---------NHPHGFVAKPETKDGSVNLMIWECIIPGKTG 51
           M+       R+ +E K   K         N   G +      D + +L  WE II G + 
Sbjct: 3   MAD--TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDET-DLSKWEAIISGPSD 59

Query: 52  TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILNEDNGWRPAIT 109
           T +E   F + +     YP  PPK  F Q    H NV   +G +CL+IL  +  W P   
Sbjct: 60  TPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEE-WTPVWD 118

Query: 110 VKQILVGIQDLLDQPNPADPAQTDGYQLF 138
           +   +  +  LL +P    P   D   + 
Sbjct: 119 LLHCVHAVWRLLREPVCDSPLDVDIGNII 147

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  127 bits (322), Expect = 2e-38
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +  R+ +E      + P    A P    G  N+  W   I G  G+ +EGG F L + F+
Sbjct: 49  SAKRIQKELADITLDPPPNCSAGP---KGD-NIYEWRSTILGPPGSVYEGGVFFLDITFT 104

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            +YP KPPK  F    +H N+   G +CL IL +   W PA+T+ ++L+ I  LL   NP
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILKD--NWSPALTISKVLLSICSLLTDCNP 162

Query: 127 ADPAQTDGYQLF 138
           ADP        +
Sbjct: 163 ADPLVGSIATQY 174

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  126 bits (319), Expect = 2e-38
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 6/132 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  
Sbjct: 6   LPKRIIKETEKLVSDPVPGITAEP---HDD-NLRYFQVTIEGPEQSPYEDGIFELELYLP 61

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           +DYP + PK +F    +HPN+   G +CL +L  +  W PA+ ++ +L+ IQ LL  PNP
Sbjct: 62  DDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN--WSPALQIRTVLLSIQALLASPNP 119

Query: 127 ADPAQTDGYQLF 138
            DP   D  + +
Sbjct: 120 NDPLANDVAEDW 131

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  126 bits (318), Expect = 3e-38
 Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 7/134 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P  +    N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E YP +PPK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  P
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSSP 113

Query: 125 NPADPAQTDGYQLF 138
            P DP  +   + F
Sbjct: 114 EPDDPLDSKVAEHF 127

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  127 bits (320), Expect = 4e-38
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
            A+ R+ ++                       +L+ ++ +I       ++ G F  +   
Sbjct: 26  AAQLRIQKDINELNLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKV 79

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
            + YP  PPK K     +HPN+   G V L+IL ED  W+P +T+  I+ G+Q L  +PN
Sbjct: 80  GQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED--WKPVLTINSIIYGLQYLFLEPN 137

Query: 126 PADPAQTD 133
           P DP   +
Sbjct: 138 PEDPLNKE 145

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  126 bits (318), Expect = 7e-38
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  +  +                    +      +I       +  G     L F+
Sbjct: 30  ARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFN 89

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E YP +PPK    +  FHPN+   G VCL+IL ED  W PA+ ++ I+ G+  L  +PNP
Sbjct: 90  EVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED--WSPALDLQSIITGLLFLFLEPNP 147

Query: 127 ADPAQTDGYQLFIQ 140
            DP   D  +L  +
Sbjct: 148 NDPLNKDAAKLLCE 161

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  124 bits (313), Expect = 2e-37
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +    +Y
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 70  PSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           P KPPK +F    +HPN+   +G +CL IL     W P IT+K  L+ +Q LL  P P D
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNA--WSPVITLKSALISLQALLQSPEPND 119

Query: 129 PAQTDGYQLF 138
           P   +  Q +
Sbjct: 120 PQDAEVAQHY 129

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  124 bits (314), Expect = 2e-37
 Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +    L +E      N P              N +    +        ++GG F      
Sbjct: 14  VRDKLLVKEVAELEANLPCTCKVHFPDP----NKLHCFQLTVTPDEGYYQGGKFQFETEV 69

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED----NGWRPAITVKQILVGIQDLL 121
            + Y   PPK K     +HPN+  +G +CLS+L E      GW P  T+K ++ G+  L 
Sbjct: 70  PDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLF 129

Query: 122 -DQPNPADPAQTD 133
            D  N  DP   +
Sbjct: 130 TDLLNFDDPLNIE 142

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  126 bits (317), Expect = 2e-37
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +   
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVP 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
            +YP KPPK +F    +HPN+   +G +CL IL     W P IT+K  L+ +Q LL  P 
Sbjct: 60  MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNA--WSPVITLKSALISLQALLQSPE 117

Query: 126 PADPAQTDGYQLF 138
           P DP   +  Q +
Sbjct: 118 PNDPQDAEVAQHY 130

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  122 bits (309), Expect = 3e-36
 Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G     RL +E K     +     A       S N   W   I G  GT +EGG+F L +
Sbjct: 21  GSKELLRLQKELKDIENENVQEIDAHI---KDS-NFFEWVGFIKGPEGTPYEGGHFTLAI 76

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
               DYP  PPK KF    +HPN+   +G +CL +L  +  W PA+T++  L+ IQ LL 
Sbjct: 77  TIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNE--WSPALTIRTALLSIQALLS 134

Query: 123 QPNPADPAQTDGYQLF 138
            P P DP   +  +++
Sbjct: 135 DPQPDDPQDAEVAKMY 150

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  120 bits (303), Expect = 6e-36
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           +L+ ++ +I       ++ G F  +    + YP  PPK K     +HPN+   G VCL+I
Sbjct: 33  DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNI 91

Query: 98  LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
           L ED  W+P +T+  I+ G+Q L  +PNP DP   +
Sbjct: 92  LRED--WKPVLTINSIIYGLQYLFLEPNPEDPLNKE 125

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  120 bits (302), Expect = 8e-36
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 1   MSGGGIARGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+   IA  R+  E K   K+     +        +    N       I G   T +EGG
Sbjct: 3   MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGG 58

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVG 116
            + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ 
Sbjct: 59  RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLS 116

Query: 117 IQDLLDQPNPADPAQTDGYQLF 138
           +Q LL    P DP        +
Sbjct: 117 LQALLAAAEPDDPQDAVVANQY 138

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  119 bits (300), Expect = 2e-35
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 23  PHGFVAKPETKDGSVNLMIWECIIPGKTGTDW--EGGYFPLTLYFSEDYPSKPPKCKFPQ 80
           PH         D    +  W   +     + +   G  + L++ FS+DYP +PP  +F  
Sbjct: 36  PHSTAIFSVDTD---TIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVT 92

Query: 81  GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL---DQPNPADPAQTDGYQL 137
             + P V   G +C  ++N+   W P      ++  + D +    +    D    +    
Sbjct: 93  PVYSPLVTGEGGICDRMVNDF--WTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHY 150

Query: 138 F 138
            
Sbjct: 151 L 151

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  117 bits (296), Expect = 2e-34
 Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 12/142 (8%)

Query: 1   MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+   IA  R+  E K   K+     +        +    N       I G   T +EGG
Sbjct: 2   MAN--IAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGG 55

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVG 116
            + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ 
Sbjct: 56  RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLS 113

Query: 117 IQDLLDQPNPADPAQTDGYQLF 138
           +Q LL    P DP        +
Sbjct: 114 LQALLAAAEPDDPQDAVVANQY 135

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  117 bits (294), Expect = 3e-34
 Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R  +   A   +  HG  A+     G  ++  W   I G  GT +EGG+F L +    DY
Sbjct: 49  RAHDSEPAATHSTSHGVSAQI---VGG-DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 104

Query: 70  PSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           P  PPK KF    +HPN+   +G +CL IL  +  W PA+T++  L+ IQ +L  P P D
Sbjct: 105 PYNPPKMKFVTKIWHPNISSQTGAICLDILKHE--WSPALTIRTALLSIQAMLADPVPTD 162

Query: 129 PAQTDGYQLF 138
           P   +  ++ 
Sbjct: 163 PQDAEVAKMM 172

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  115 bits (289), Expect = 2e-33
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS     + R+  +     ++     +           L  +     G  GT +EGG + 
Sbjct: 20  MSSPSPGKRRMDTDVIKLIESKHEVTILG--------GLNEFVVKFYGPQGTPYEGGVWK 71

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQIL-VGIQ 118
           + +   + YP K P   F    FHPN+   SGTVCL ++N+   W     +  I    + 
Sbjct: 72  VRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTALYDLTNIFESFLP 129

Query: 119 DLLDQPNPADPAQTDGYQLF 138
            LL  PNP DP   D   ++
Sbjct: 130 QLLAYPNPIDPLNGDAAAMY 149

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  118 bits (296), Expect = 3e-33
 Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E      + P    +    +     L I + +I G   T +  G F   +YF +DY
Sbjct: 80  RLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDY 139

Query: 70  PSKPPKCKF-----PQGFFHPNVYPSGTVCLSILNEDNG-----WRPAI-TVKQILVGIQ 118
           PS PP             F+PN+Y  G VCLSILN  +G     W P   +  Q+LV +Q
Sbjct: 140 PSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQ 199

Query: 119 DLL--DQPNPADPA 130
            L+   +P   +P 
Sbjct: 200 SLILVAEPYFNEPG 213

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  116 bits (292), Expect = 3e-33
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 6   IARGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           IA  R+  E K   K+     +             N       I G   T +EGG + L 
Sbjct: 57  IAVQRIKREFKEVLKSEETSKNQIKVDLV----DENFTELRGEIAGPPDTPYEGGRYQLE 112

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
           +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q LL
Sbjct: 113 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALL 170

Query: 122 DQPNPADPAQTDGYQLF 138
               P DP        +
Sbjct: 171 AAAEPDDPQDAVVANQY 187

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  114 bits (286), Expect = 4e-33
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL ++    +K+      A+P       N++ W  ++ G   T +EGGY+   L F 
Sbjct: 15  ATQRLKQDYLRIKKDPVPYICAEPLPS----NILEWHYVVRGPEMTPYEGGYYHGKLIFP 70

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPN 125
            ++P KPP         +     +  +CLSI +   + W PA +V  IL G+   + +  
Sbjct: 71  REFPFKPPSIYMIT--PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKG 128

Query: 126 PADPA 130
           P   +
Sbjct: 129 PTLGS 133

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  112 bits (282), Expect = 8e-33
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 8/131 (6%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            LT ++  + K    G+  +    +   +   ++ +  G  GT +EGG + + +   +DY
Sbjct: 3   SLTRKQCDFTKLIMAGYDLEL---NNG-STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDY 58

Query: 70  PSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQIL-VGIQDLLDQPNPA 127
           P   P   F     HPNV   SG+VCL ++N+   W P  ++  +  V +  LL  PNP+
Sbjct: 59  PFASPSIGFMNKLLHPNVDEASGSVCLDVINQT--WTPLYSLVNVFEVFLPQLLTYPNPS 116

Query: 128 DPAQTDGYQLF 138
           DP  +D   L 
Sbjct: 117 DPLNSDAASLL 127

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  107 bits (268), Expect = 2e-30
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLS 96
            +  +     G  GT +E G + L +    DYP K P   F     HPNV   SG+VCL 
Sbjct: 36  TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD 95

Query: 97  ILNEDNGWRPAITVKQIL-VGIQDLLDQPNPADPAQTDGYQLFI 139
           ++N+   W P   ++ I  V +  LL  PNP+DP       L  
Sbjct: 96  VINQT--WTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 137

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score =  103 bits (257), Expect = 1e-28
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 15/149 (10%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG------------ 48
           +SG   A  RL +E +   ++  +             +L  W   +              
Sbjct: 22  VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQ 80

Query: 49  KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN-VYPSGTVCLSILNEDNGWRPA 107
                    Y  L   F +++P  PP  +          V   G +C+ +L +  GW  A
Sbjct: 81  ILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-GWSSA 139

Query: 108 ITVKQILVGIQDLLDQPNPADPAQTDGYQ 136
            +++ +++ I   L +         +  Q
Sbjct: 140 YSIESVIMQINATLVKGKARVQFGANKNQ 168

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 34  DGSVNLMIWECIIPGKTGTDWEGG--YFPLTLYFSEDYPSKPPKCKFP-----QGFFHPN 86
            GS  LM     IP      + G     P+ L+  + YP  PP C              +
Sbjct: 48  TGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 103

Query: 87  VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           V  +G + L  L       P   +  ++  +  +     P
Sbjct: 104 VDANGKIYLPYL--HEWKHPQSDLLGLIQVMIVVFGDEPP 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.95
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.84
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.74
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.63
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	96.74
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	96.08
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	95.91
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	95.64
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	95.41
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	94.75
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	93.82
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	93.26

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=2.1e-50  Score=288.95  Aligned_cols=137  Identities=42%  Similarity=0.784  Sum_probs=132.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      ||  +.+.+||++||++|+++++.|+.+.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         1 Ms--~~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t   74 (169)
T 1ayz_A            1 MS--TPARRRLMRDFKRMKEDAPPGVSASPLP----DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS   74 (169)
T ss_dssp             -C--CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEecC----CccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCcccccc
Confidence            77  7899999999999999999999999886    89999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        81 ~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ++|||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        75 ~i~HPNI~~~G~ICl~iL~~--~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y  137 (169)
T 1ayz_A           75 EMFHPNVYANGEICLDILQN--RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY  137 (169)
T ss_dssp             CCCCTTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHH
T ss_pred             CCccCCCCCCCeEeehhhcc--CCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHH
Confidence            99999999999999999987  8999999999999999999999999999999999999999988

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-50  Score=287.02  Aligned_cols=144  Identities=58%  Similarity=1.124  Sum_probs=134.2

Q ss_pred             CcchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            2 SGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         2 s~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      +||..|.+||+|||++|++++++|+++.+..+ |+..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t   85 (163)
T 3rcz_B            6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP   85 (163)
T ss_dssp             ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence            36788999999999999999999999998864 33349999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        81 ~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ++|||||+.+|+||+++|..+++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y  150 (163)
T 3rcz_B           86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEY  150 (163)
T ss_dssp             CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHH
Confidence            99999999999999999987557999999999999999999999999999999999999999988

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=2.8e-50  Score=287.61  Aligned_cols=140  Identities=38%  Similarity=0.745  Sum_probs=131.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      ||  +.|.+||++||++|+++++.|+++.+..+   +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         1 M~--~~a~~RL~kEl~~l~~~~~~gi~~~~~~~---~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t   75 (165)
T 2ucz_A            1 MS--KTAQKRLLKELQQLIKDSPPGIVAGPKSE---NNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP   75 (165)
T ss_dssp             -C--HHHHHHHHHHHHHHHHSCCTTEEEEESSS---SCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEECCC---CCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeC
Confidence            77  88999999999999999999999988653   69999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        81 ~i~HpnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ++|||||+.+|+||+++|..           .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        76 ~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y  151 (165)
T 2ucz_A           76 SILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEF  151 (165)
T ss_dssp             CCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHH
T ss_pred             CCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHH
Confidence            99999999999999999931           238999999999999999999999999999999999999999988

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=5.8e-50  Score=282.25  Aligned_cols=136  Identities=31%  Similarity=0.655  Sum_probs=132.2

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (146)
Q Consensus         4 ~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (146)
                      ++.|.+||++|+++++++++.|+++.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   77 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVG----DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVY   77 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcc
Confidence            36799999999999999999999999977    79999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        78 HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f  137 (151)
T 4gpr_A           78 HPNINKNGVICLDILKD--QWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQF  137 (151)
T ss_dssp             BTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHH
T ss_pred             cceECCCCEEEcccccC--CCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHH
Confidence            99999999999999987  8999999999999999999999999999999999999999988

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=5.2e-50  Score=282.80  Aligned_cols=137  Identities=41%  Similarity=0.829  Sum_probs=133.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      ||  +.+.+||++|+++++++++.|+.+.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         1 Ms--~~a~~RL~~E~~~l~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   74 (152)
T 2aak_A            1 MS--TPARKRLMRDFKRLQQDPPAGISGAPQD----NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS   74 (152)
T ss_dssp             CC--CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEeCC----CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEec
Confidence            77  7899999999999999999999998876    79999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        81 ~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ++|||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        75 ~i~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y  137 (152)
T 2aak_A           75 RMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREY  137 (152)
T ss_dssp             CCCCTTBCTTSBBCCGGGTT--SCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHH
T ss_pred             CcccCCCCCCCEEechhhcC--CCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHH
Confidence            99999999999999999987  8999999999999999999999999999999999999999988

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=4e-50  Score=284.72  Aligned_cols=143  Identities=61%  Similarity=1.150  Sum_probs=133.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (146)
                      ||  +.+.+||++|+++++++++.|+++.+... ++.+|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus         1 Ms--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   78 (157)
T 2gjd_A            1 MS--SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP   78 (157)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence            67  78999999999999999999999988753 3335999999999999999999999999999999999999999999


Q ss_pred             cCccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        80 t~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |++|||||+.+|+||+++|...++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y  144 (157)
T 2gjd_A           79 AGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEY  144 (157)
T ss_dssp             TTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHH
T ss_pred             CCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHH
Confidence            999999999999999999987557999999999999999999999999999999999999999988

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-50  Score=285.89  Aligned_cols=137  Identities=32%  Similarity=0.617  Sum_probs=130.5

Q ss_pred             cchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 032159            3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (146)
Q Consensus         3 ~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (146)
                      ||..+.+||++||++|+++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~----~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   77 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDE----SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI   77 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEECC----CchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCc
Confidence            447789999999999999999999999877    7999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        83 ~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        78 ~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f  138 (154)
T 2c2v_B           78 YHPNVDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQA  138 (154)
T ss_dssp             CCTTBCTTCBBCCHHHHT--SCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHH
T ss_pred             ccCcCccCCeEEchhccC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            999999999999999986  8999999999999999999999999999999999999999988

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=6.4e-50  Score=281.78  Aligned_cols=137  Identities=34%  Similarity=0.673  Sum_probs=132.8

Q ss_pred             cchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 032159            3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (146)
Q Consensus         3 ~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (146)
                      ||..+.+||++|+++|+++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         1 ~s~~~~~RL~kEl~~l~~~~~~~~~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   76 (150)
T 1z2u_A            1 GSHMALKRIQKELQDLGRDPPAQCSAGPVG----DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI   76 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCSSEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCEEEEECC----CcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCc
Confidence            567899999999999999999999999877    7999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        83 ~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        77 ~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f  137 (150)
T 1z2u_A           77 YHPNINSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERY  137 (150)
T ss_dssp             CBTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             ccCcCCCCCeEeeccccC--CCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHH
Confidence            999999999999999997  8999999999999999999999999999999999999999988

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-49  Score=284.54  Aligned_cols=139  Identities=29%  Similarity=0.537  Sum_probs=132.7

Q ss_pred             cchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 032159            3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (146)
Q Consensus         3 ~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (146)
                      ||..+.+||++||++|+++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         1 gs~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i   76 (169)
T 1yh2_A            1 GSMQRASRLKRELHMLATEPPPGITCWQDK----DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPI   76 (169)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCEEEEeCC----CchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCC
Confidence            567899999999999999999999999877    8999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcEEecCCCC--CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           83 FHPNVYPSGTVCLSILNE--DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        83 ~HpnV~~~G~icl~~l~~--~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||||+.+|+||+++|..  .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        77 ~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y  141 (169)
T 1yh2_A           77 YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAF  141 (169)
T ss_dssp             CBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             ccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHH
Confidence            999999999999999981  128999999999999999999999999999999999999999987

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.6e-50  Score=283.52  Aligned_cols=135  Identities=27%  Similarity=0.553  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      ..+.+||++||++|+++++.|+++.+.+    +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus        12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   87 (158)
T 1zdn_A           12 PHIIRLVYKEVTTLTADPPDGIKVFPNE----EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECC----CChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCccc
Confidence            7789999999999999999999999876    899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        88 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f  146 (158)
T 1zdn_A           88 PNVGANGEICVNVLKR--DWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY  146 (158)
T ss_dssp             TTBCTTSBBCHHHHTT--TCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHH
T ss_pred             CCCCCCCEEehhhcCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            9999999999999987  8999999999999999999999999999999999999999988

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=2.2e-49  Score=282.78  Aligned_cols=138  Identities=39%  Similarity=0.706  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.|.+||++||++++++++.|+++.+..+   +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~---~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNE---ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH   78 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCC---CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCcc
Confidence            57899999999999999999999988763   599999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|..           .++|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 PNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f  150 (164)
T 3h8k_A           79 PNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQF  150 (164)
T ss_dssp             TTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHH
T ss_pred             CCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHH
Confidence            9999999999999972           138999999999999999999999999999999999999999988

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-49  Score=282.54  Aligned_cols=135  Identities=33%  Similarity=0.677  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++|+++|+++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           20 QGALKRINKELNDLSKDPPTNCSAGPVG----DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             TTHHHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence            5689999999999999999999999876    799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        96 PNI~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f  154 (166)
T 2ayv_A           96 PNINSQGAICLDILKD--QWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRY  154 (166)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             CcCCCCCeEEcccccc--cCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHH
Confidence            9999999999999997  8999999999999999999999999999999999999999988

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=2.3e-49  Score=281.85  Aligned_cols=143  Identities=64%  Similarity=1.207  Sum_probs=134.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (146)
                      |+  +.+.+||++|+++|+++++.|+.+.+... ++.+|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus         4 M~--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   81 (161)
T 2grr_A            4 MS--GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE   81 (161)
T ss_dssp             CC--HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             cc--HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence            55  78999999999999999999999988643 3347999999999999999999999999999999999999999999


Q ss_pred             cCccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        80 t~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |++|||||+.+|+||+++|...++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        82 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y  147 (161)
T 2grr_A           82 PPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEY  147 (161)
T ss_dssp             SCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             cCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHH
Confidence            999999999999999999986457999999999999999999999999999999999999999988

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.1e-50  Score=286.48  Aligned_cols=137  Identities=29%  Similarity=0.544  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++|+++|+++++.|+.+.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        22 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   97 (169)
T 1yrv_A           22 GRAYLLLHRDFCDLKENNYKGITAKPVS----EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH   97 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTEEEEECS----TTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence            7899999999999999999999999877    799999999999999999999999999999999999999999999999


Q ss_pred             ccc-CCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV-~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||| +.+|+||+++|...++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|
T Consensus        98 PNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y  159 (169)
T 1yrv_A           98 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLY  159 (169)
T ss_dssp             TTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHH
T ss_pred             CcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHH
Confidence            999 7899999999982128999999999999999999999999999999999999999988

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=3.1e-49  Score=280.68  Aligned_cols=139  Identities=30%  Similarity=0.519  Sum_probs=131.7

Q ss_pred             CCcchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 032159            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (146)
                      |+|++.+.+||++|+++|+++   ++.++++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus         3 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~   78 (159)
T 2bep_A            3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   78 (159)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECS----SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCC----CchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEE
Confidence            555588999999999999884   57899999877    79999999999999999999999999999999999999999


Q ss_pred             eccCccccccC-CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           78 FPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        78 f~t~i~HpnV~-~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |.|++|||||+ .+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 f~t~i~HPni~~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (159)
T 2bep_A           79 FITKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMF  145 (159)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             eeCCCCccCCCCCCCEEeChhhhc--cCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            99999999999 599999999987  8999999999999999999999999999999999999999988

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=5e-49  Score=280.92  Aligned_cols=135  Identities=33%  Similarity=0.664  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++|+++++++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H   93 (165)
T 2c4o_A           18 SMALKRIHKELNDLARDPPAQCSAGPVG----DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   93 (165)
T ss_dssp             HHHHHHHHHHHHHHHSSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence            5689999999999999999999999876    799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        94 PnV~~~G~ICl~iL~~--~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y  152 (165)
T 2c4o_A           94 PNINSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKY  152 (165)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHH
T ss_pred             CcCCCCCeEeehhhcC--CCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHH
Confidence            9999999999999997  8999999999999999999999999999999999999999988

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=5.2e-49  Score=278.72  Aligned_cols=134  Identities=34%  Similarity=0.600  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   83 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGITAFPDG----DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWH   83 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECC----CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCccc
Confidence            4689999999999999999999998876    799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|
T Consensus        84 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y  141 (156)
T 2e2c_A           84 PNVDQSGNICLDILKE--NWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEY  141 (156)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHH
T ss_pred             CCCccCceEECccccc--cCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHH
Confidence            9999999999999987  899999999999999999999999999999999999 899887

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=3e-49  Score=278.06  Aligned_cols=132  Identities=35%  Similarity=0.688  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   87 (146)
                      .+||++|+++++++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   78 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPVP----ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI   78 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECC----CcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCC
Confidence            5899999999999999999999877    799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           88 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        88 ~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      +.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 ~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  134 (149)
T 2r0j_A           79 DKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDA  134 (149)
T ss_dssp             CTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHH
T ss_pred             CCCCEEechhcCC--CCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHH
Confidence            9999999999987  8999999999999999999999999999999999999999988

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=4.5e-49  Score=282.86  Aligned_cols=139  Identities=35%  Similarity=0.579  Sum_probs=111.1

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (146)
Q Consensus         4 ~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (146)
                      ++.+.+||+|||++|+++++.|+++.+..+   +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus        15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~---~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~   91 (172)
T 2awf_A           15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDD---NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW   91 (172)
T ss_dssp             CCTTHHHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEECCC---ccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence            467899999999999999999999988653   69999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHh-hh
Q 032159           84 HPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLY-WF  145 (146)
Q Consensus        84 HpnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~-~f  145 (146)
                      ||||+.+|+||+++|..           .++|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|++ +|
T Consensus        92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f  165 (172)
T 2awf_A           92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEF  165 (172)
T ss_dssp             CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------
T ss_pred             cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHH
Confidence            99999999999999972           1389999999999999999999999999999999999999999 87

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.9e-49  Score=283.14  Aligned_cols=134  Identities=35%  Similarity=0.562  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++||++|+++++.|+++.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  104 (179)
T 1i7k_A           29 GPVGKRLQQELMTLMMSGDKGISAFPES----DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH  104 (179)
T ss_dssp             -CHHHHHHHHHHHHHHHCCTTEEEEEET----TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcC----CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence            6789999999999999999999999876    799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|
T Consensus       105 PNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f  162 (179)
T 1i7k_A          105 PNVDTQGNISLDILKE--KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAF  162 (179)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHH
T ss_pred             CccccCCeEEcccCcC--cCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHH
Confidence            9999999999999987  899999999999999999999999999999999999 999887

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=8e-49  Score=275.90  Aligned_cols=134  Identities=30%  Similarity=0.589  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      +.+||++|+++++++++.|+++.+.+.   +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~---~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSE---SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSS---SCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCC---CCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCC
Confidence            379999999999999999999998772   49999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |+. +|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 i~~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f  136 (149)
T 1fxt_A           79 ISSVTGAICLDILKN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESF  136 (149)
T ss_dssp             BCSSSCCBCCHHHHT--SCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHH
T ss_pred             CcCCCCeEeCCcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            998 99999999987  8999999999999999999999999999999999999999987

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=2.9e-48  Score=281.23  Aligned_cols=136  Identities=35%  Similarity=0.661  Sum_probs=124.9

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      |++ +.+.|||++||++|+++++.|+++.+..+   +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         3 m~~-~~a~kRL~kEl~~l~~~~~~gi~~~~~~~---~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   78 (183)
T 3rz3_A            3 MGS-PSSQKALLLELKGLQEEPVEGFRVTLVDE---GDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT   78 (183)
T ss_dssp             --C-CHHHHHHHHHHHHHHHSCCTTEEEEECTT---CCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             Ccc-hHHHHHHHHHHHHHHhCCCCCEEEEecCc---cchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecC
Confidence            453 57899999999999999999999984432   79999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH
Q 032159           81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ  140 (146)
Q Consensus        81 ~i~HpnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~  140 (146)
                      ++|||||+.+|+||+++|..           .++|+|+++|.+||.+|+++|.+||+++|+|.|||++|++
T Consensus        79 ~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~  149 (183)
T 3rz3_A           79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRK  149 (183)
T ss_dssp             CCCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHH
T ss_pred             CCccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Confidence            99999999999999999972           1389999999999999999999999999999999999998

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=5.6e-49  Score=278.30  Aligned_cols=135  Identities=32%  Similarity=0.620  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~----~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   79 (155)
T 1jat_A            4 ASLPKRIIKETEKLVSDPVPGITAEPHD----DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH   79 (155)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECC----CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeeccccc
Confidence            3568999999999999999999999877    799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        80 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  138 (155)
T 1jat_A           80 PNIDRLGRICLDVLKT--NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGA  138 (155)
T ss_dssp             TTBCTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHH
T ss_pred             CCCCCCCEEEchhhcc--CCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            9999999999999987  8999999999999999999999999999999999999999988

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=3e-48  Score=284.95  Aligned_cols=137  Identities=31%  Similarity=0.534  Sum_probs=129.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 032159            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (146)
                      ||  +.|.+||++||++|+++   ++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus         2 Ms--~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~   75 (201)
T 3k9o_A            2 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   75 (201)
T ss_dssp             ----CTTHHHHHHHHHHHHTCHHHHTTSEEEEECS----TTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             Cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECC----CCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccc
Confidence            66  78999999999999886   36899999987    79999999999999999999999999999999999999999


Q ss_pred             eccCccccccC-CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           78 FPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        78 f~t~i~HpnV~-~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |.|++|||||+ .+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        76 f~t~i~HPnv~~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f  142 (201)
T 3k9o_A           76 FITKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMF  142 (201)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             cccCcccCCCcCCCCeeeCccccc--CCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHH
Confidence            99999999999 499999999987  8999999999999999999999999999999999999999988

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1e-47  Score=280.19  Aligned_cols=135  Identities=32%  Similarity=0.595  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++||++|+++++.|+.+.+..    +|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  122 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKG----DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH  122 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeeccc----CccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCcc
Confidence            4578999999999999999999999877    899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus       123 PNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f  181 (194)
T 3bzh_A          123 CNINSQGVICLDILKD--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH  181 (194)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             ceECCCCceechhhhc--cCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHH
Confidence            9999999999999987  8999999999999999999999999999999999999999988

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=5.7e-48  Score=281.22  Aligned_cols=135  Identities=34%  Similarity=0.666  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHHHHcCC-------------CCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCC
Q 032159            5 GIARGRLTEERKAWRKNHP-------------HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS   71 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~-------------~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~   71 (146)
                      ..+.+||++||++|+++++             .|+.+.+.+    +|+++|+++|.||++|||+||.|+++|.||++||+
T Consensus        31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~  106 (193)
T 2f4z_A           31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVG----GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY  106 (193)
T ss_dssp             -CHHHHHHHHHHHHHHC----------------CEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcC----CCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCC
Confidence            4578999999999999876             799999877    79999999999999999999999999999999999


Q ss_pred             CCCeeeeccCccccccC-CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           72 KPPKCKFPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        72 ~pP~v~f~t~i~HpnV~-~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      +||+|+|.|+||||||+ .+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus       107 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f  179 (193)
T 2f4z_A          107 NPPKMKFVTKIWHPNISSQTGAICLDILKH--EWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLF  179 (193)
T ss_dssp             SCCEEEESSCCCBTTBCTTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             CCCeEEEecCCccCCCcCCCCEEECccccc--cCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            99999999999999999 599999999988  8999999999999999999999999999999999999999988

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=3.1e-48  Score=286.88  Aligned_cols=135  Identities=33%  Similarity=0.657  Sum_probs=130.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++||++|+++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        22 s~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           22 SKELLRLQKELKDIENENVQEIDAHIKD----SNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             CHHHHHHHHHHHHHHHSCTTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            6789999999999999999999999987    799999999999999999999999999999999999999999999999


Q ss_pred             cccC-CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~-~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+ .+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        98 PNI~~~~G~ICL~iL~~--~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f  157 (216)
T 2pwq_A           98 PNISSQTGAICLDVLKN--EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALF  157 (216)
T ss_dssp             TTBCTTTCBBCCHHHHH--HCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             CCCcCCCCEEEchhhcc--cCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            9999 599999999987  8999999999999999999999999999999999999999987

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=9.6e-48  Score=272.00  Aligned_cols=133  Identities=29%  Similarity=0.575  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEE-eecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVA-KPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~-~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      .+.+||++|+++|+++++.|+.+ .+.+    +|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~----~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDD----ANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYH   78 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECS----SCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCC----CchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCcc
Confidence            47899999999999999999999 6655    89999999999 999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCC-CCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSIL-NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l-~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++| .+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 PnV~~~G~iCl~iL~~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y  138 (155)
T 1wzv_A           79 PNVDENGQICLPIISSE--NWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELF  138 (155)
T ss_dssp             TTBCTTCBCCCGGGCTT--TCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHH
T ss_pred             CcCCCCCeEeecCCCcc--CCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999 55  8999999999999999999999999999999999999999988

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=1.8e-47  Score=274.54  Aligned_cols=139  Identities=27%  Similarity=0.448  Sum_probs=126.3

Q ss_pred             CCcchHHHHHHHHHHHHHHH-c-C------CC---CeEEee-cCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCC
Q 032159            1 MSGGGIARGRLTEERKAWRK-N-H------PH---GFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED   68 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~-~-~------~~---~~~~~~-~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~   68 (146)
                      |+|++.+.+||++||++|++ . +      +.   ++.+.+ .+    +|+++|+++|.||++|||+||.|+++|.||++
T Consensus         1 ~~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~----~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~   76 (172)
T 2y9m_A            1 GAMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDE----TDLSKWEAIISGPSDTPYENHQFRILIEVPSS   76 (172)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESST----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTT
T ss_pred             CCCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCC----CchhEEEEEEECCCCCcccCCEEEEEEECCCc
Confidence            55668999999999999998 4 3      33   456666 44    79999999999999999999999999999999


Q ss_pred             CCCCCCeeeecc-CccccccC-CCCcEEecCCC-CCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH-hHhh
Q 032159           69 YPSKPPKCKFPQ-GFFHPNVY-PSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ-VLYW  144 (146)
Q Consensus        69 YP~~pP~v~f~t-~i~HpnV~-~~G~icl~~l~-~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~-~~~~  144 (146)
                      ||++||+|+|.| ++|||||+ .+|+||+++|. +  +|+|+++|.+||.+|+++|.+|++++|+|.|||++|++ |+++
T Consensus        77 YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~--~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~  154 (172)
T 2y9m_A           77 YPMNPPKISFMQNNILHCNVKSATGEICLNILKPE--EWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSA  154 (172)
T ss_dssp             TTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHH
T ss_pred             CCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCC--CCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHH
Confidence            999999999999 99999995 79999999998 5  89999999999999999999999999999999999999 9988


Q ss_pred             h
Q 032159          145 F  145 (146)
Q Consensus       145 f  145 (146)
                      |
T Consensus       155 f  155 (172)
T 2y9m_A          155 Y  155 (172)
T ss_dssp             H
T ss_pred             H
Confidence            7

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=6.2e-47  Score=285.45  Aligned_cols=135  Identities=30%  Similarity=0.529  Sum_probs=130.1

Q ss_pred             hHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 032159            5 GIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG   81 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   81 (146)
                      +.+.+||++||++|+++   ++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~----dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~  131 (253)
T 3e46_A           56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK  131 (253)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHTTSEEEEECS----TTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCEEEEECC----CcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence            78999999999999886   47899999987    799999999999999999999999999999999999999999999


Q ss_pred             ccccccC-CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           82 FFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        82 i~HpnV~-~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||||||+ .+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus       132 i~HPNV~~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f  194 (253)
T 3e46_A          132 IWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMF  194 (253)
T ss_dssp             CCBTTBCTTTCBBCCGGGTT--CCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             CccCCccCCCCeeecccccC--CCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHH
Confidence            9999999 599999999987  8999999999999999999999999999999999999999988

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=6.5e-47  Score=270.68  Aligned_cols=137  Identities=24%  Similarity=0.429  Sum_probs=128.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++||++|+++++.|+++.+...   +|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~---~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   88 (167)
T 3fn1_B           13 SVRDKLLVKEVAELEANLPCTCKVHFPDP---NKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH   88 (167)
T ss_dssp             CHHHHHHHHHHHHHGGGSCTTEEEECSSS---SCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCC---CcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence            46899999999999999999999986543   7899999999 8999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCC----CCCCCccCcHHHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNE----DNGWRPAITVKQILVGIQDLLDQ-PNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~----~~~W~p~~~l~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|..    .++|+|+++|.+||.+|+++|.+ |++++|+|.|||++|++|+++|
T Consensus        89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f  154 (167)
T 3fn1_B           89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDF  154 (167)
T ss_dssp             SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHH
T ss_pred             CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHH
Confidence            9999999999999975    24799999999999999999999 7999999999999999999988

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.1e-47  Score=283.78  Aligned_cols=135  Identities=30%  Similarity=0.579  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (146)
                      .+.+||++|+++|++++++|+++.+...   +++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~---~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HP   78 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSE---SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP   78 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSS---SSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCS
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCC---ccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccC
Confidence            3689999999999999999999988762   4677999999999999999999999999999999999999999999999


Q ss_pred             ccCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           86 NVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        86 nV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||+. +|+||+++|.+  +|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 NI~~~~G~ICL~iL~~--~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f  137 (215)
T 1tte_A           79 NISSVTGAICLDILRN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESF  137 (215)
T ss_dssp             SSCSSSSCCCSSTTTC--CSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHH
T ss_pred             cCcCCCCEEECccCCC--CCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHH
Confidence            9998 99999999987  8999999999999999999999999999999999999999988

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.7e-47  Score=269.13  Aligned_cols=132  Identities=28%  Similarity=0.564  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (146)
                      +.+.+||++|++++  ++++++++. +..    +|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~----~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   77 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDP----DDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY   77 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSST----TCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccC----CccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCc
Confidence            46899999999999  678899987 554    7999999998 899999999999999999999999999999999999


Q ss_pred             ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        78 HPnv~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f  137 (160)
T 1y8x_A           78 HPNIDLEGNVCLNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF  137 (160)
T ss_dssp             BTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHH
T ss_pred             cCcCCCCCeEEcccchh--hccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHH
Confidence            99999999999999987  8999999999999999999999999999999999999999988

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-46  Score=271.74  Aligned_cols=133  Identities=27%  Similarity=0.533  Sum_probs=126.7

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 032159            4 GGIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (146)
Q Consensus         4 ~~~~~~Rl~~El~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (146)
                      ++.+.+||++||++|  ++++|+++. +.+    +|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus        24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~----~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i   96 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--NLPKTCDISFSDP----DDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV   96 (180)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSST----TCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEeccc----ccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccC
Confidence            367899999999999  678899987 554    7999999998 99999999999999999999999999999999999


Q ss_pred             cccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        83 ~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        97 ~HPNV~~~G~iCl~iL~~--~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f  157 (180)
T 2nvu_C           97 YHPNIDLEGNVALNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF  157 (180)
T ss_dssp             CBTTBCTTSBBCCGGGTT--SCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHH
T ss_pred             ccCCCCCCCcEEcccccc--cCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHH
Confidence            999999999999999987  8999999999999999999999999999999999999999988

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=9e-47  Score=266.75  Aligned_cols=134  Identities=28%  Similarity=0.592  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      |.+||++|+++|+++++.|+.+.+..+   +|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~---~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDE---ANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN   78 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSC---SSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCC---CchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence            679999999999999999998655332   79999999998 99999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |+.+|+||+++|.. ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 v~~~G~iCl~iL~~-~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  136 (154)
T 1c4z_D           79 IDEKGQVCLPVISA-ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF  136 (154)
T ss_dssp             BCTTCBBCCTTTSS-SSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTT
T ss_pred             CCCCCEEECCCCCC-CCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHH
Confidence            99999999999973 28999999999999999999999999999999999999999887

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.1e-47  Score=271.83  Aligned_cols=135  Identities=27%  Similarity=0.485  Sum_probs=124.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      |++.+.+.+||++||++|++   .|+++.+.     +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-----ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t   91 (179)
T 2z5d_A           20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-----GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMN   91 (179)
T ss_dssp             ---CCHHHHHHHHHHHHHHH---SSSCEEEE-----EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CCCchHHHHHHHHHHHhcCc---CCCEEEEC-----CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEec
Confidence            55434689999999999985   47777774     36899999999999999999999999999999999999999999


Q ss_pred             CccccccCC-CCcEEecCCCCCCCCCccCcHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           81 GFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        81 ~i~HpnV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ++|||||+. +|+||+++|.+  +|+|+++|.+||.+ |+++|.+|++++|+|.+||++|++|+++|
T Consensus        92 ~i~HPNV~~~~G~ICL~iL~~--~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y  156 (179)
T 2z5d_A           92 KIFHPNIDEASGTVCLDVINQ--TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEY  156 (179)
T ss_dssp             CCCBTTBCTTTCBBCHHHHHH--HCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHH
T ss_pred             CCccCcCCCCCCeEecccccc--CCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHH
Confidence            999999998 99999999987  89999999999999 99999999999999999999999999988

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=7.6e-47  Score=266.45  Aligned_cols=130  Identities=26%  Similarity=0.536  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      |.+||++|+++++++   |+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         3 a~~Rl~kEl~~l~~~---~~~v~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   75 (152)
T 2onu_A            3 SLTRKQCDFTKLIMA---GYDLELNN----GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPN   75 (152)
T ss_dssp             CCCHHHHTHHHHHHH---TCCEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             HHHHHHHHHHhcCcC---CCEEEEcc----CccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCc
Confidence            579999999999875   67787776    79999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CCcEEecCCCCCCCCCccCcHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYP-SGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~-~G~icl~~l~~~~~W~p~~~l~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |+. +|+||+++|.+  +|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|
T Consensus        76 i~~~~G~iCl~il~~--~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y  134 (152)
T 2onu_A           76 VDEASGSVCLDVINQ--TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIY  134 (152)
T ss_dssp             BCTTTCBBCHHHHHH--HCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHH
T ss_pred             CcCcCCeEecccccc--cCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            994 99999999987  89999999999998 68999999999999999999999999987

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=6e-46  Score=265.64  Aligned_cols=137  Identities=19%  Similarity=0.416  Sum_probs=127.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHcC------------CCCeEEeecCCCCCCCccEEEEEEcCCCCCCCC--CCEEEEEEEeC
Q 032159            1 MSGGGIARGRLTEERKAWRKNH------------PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWE--GGYFPLTLYFS   66 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~------------~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~--gg~f~~~i~fp   66 (146)
                      ||  +.+.+||++||++|++++            +.++.+.+.+    +|+++|+++|.||++|||+  ||.|+++|.||
T Consensus         5 Ms--~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~----~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp   78 (167)
T 4ds2_A            5 MK--NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDT----DTIYNWILKVKAPADSVYGGAGNTYQLSVLFS   78 (167)
T ss_dssp             CC--CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEE----SSTTEEEEEEECCTTSGGGTTCCEEEEEEECC
T ss_pred             cc--HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCC----CcccEEEEEEECCCCCCccCCCCEEEEEEECC
Confidence            66  778999999999999977            6788998877    8999999999999999999  99999999999


Q ss_pred             CCCCCCCCeeeeccCccccccCCCCcEEecCCCCCCCCCccCcHHHHH-HHHHHhhcC--CCCCCCCCHHHHHHHHHhHh
Q 032159           67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQIL-VGIQDLLDQ--PNPADPAQTDGYQLFIQVLY  143 (146)
Q Consensus        67 ~~YP~~pP~v~f~t~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl-~~i~~ll~~--p~~~~p~n~~aa~~~~~~~~  143 (146)
                      ++||++||+|+|.|++|||||+.+|+||+++|.+  +|+|++++.++| ..|++++.+  |++++|+|.|||++|++|++
T Consensus        79 ~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~--~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~  156 (167)
T 4ds2_A           79 DDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND--FWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQ  156 (167)
T ss_dssp             TTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHT--TCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHH
T ss_pred             CCCCCCCCEEEEeCCcccccCCCCCEEEcccCcC--CCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHH
Confidence            9999999999999999999999999999999987  899999999975 467788864  89999999999999999999


Q ss_pred             hh
Q 032159          144 WF  145 (146)
Q Consensus       144 ~f  145 (146)
                      +|
T Consensus       157 ~f  158 (167)
T 4ds2_A          157 DF  158 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            88

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=3.4e-45  Score=266.28  Aligned_cols=132  Identities=32%  Similarity=0.550  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEe----ecCCCCCCCcc---EEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAK----PETKDGSVNLM---IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~----~~~~~~~~~~~---~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (146)
                      +.|.+||++||++|+  .++++++.    +..    +|++   +|+++|. |++|||+||.|+++|.||++||++||+|+
T Consensus        28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~----~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~  100 (190)
T 3o2u_A           28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDS----ADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV  100 (190)
T ss_dssp             CHHHHHHHHHHHTCC--CCTTEEEEEEECTTC----CCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred             cHHHHHHHHHHHhcc--CCCCEEEEecCCCCC----ccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence            578999999999997  77899987    554    7999   9999998 78899999999999999999999999999


Q ss_pred             eccCccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           78 FPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        78 f~t~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |.|++|||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus       101 f~t~i~HPnV~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f  166 (190)
T 3o2u_A          101 CLKKIFHPNIDLKGNVCLNILRE--DWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEF  166 (190)
T ss_dssp             ECSCCCCTTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHH
T ss_pred             EecCcccCCCCCCCeEechhccC--CCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHH
Confidence            99999999999999999999987  8999999999999999999999999999999999999999988

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.3e-44  Score=289.00  Aligned_cols=135  Identities=32%  Similarity=0.636  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.|.|||++|+++|++++++|+++.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVG----DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   77 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEET----TEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccc
Confidence            5789999999999999999999999987    899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|+||+++|.+  +|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        78 Pnv~~~G~iCl~il~~--~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y  136 (399)
T 4ddg_A           78 PNINSNGSISLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKY  136 (399)
T ss_dssp             TTBCTTCBBCCGGGTT--SCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHH
T ss_pred             cccCCCCeEeCccccc--CCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHH
Confidence            9999999999999987  8999999999999999999999999999999999999999987

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=2.4e-45  Score=259.52  Aligned_cols=133  Identities=25%  Similarity=0.423  Sum_probs=120.8

Q ss_pred             hHHHHHHHHHHHHHHHc-CCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159            5 GIARGRLTEERKAWRKN-HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~-~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (146)
                      ..+.+||++||++++++ ++.++++.+... +..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~-~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~   98 (156)
T 2q0v_A           20 VPRSFRLLDELERGQKGNVSEGVSFGLESA-DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE   98 (156)
T ss_dssp             CCHHHHHHHHHHHHHCC-CCTTEEEEESST-TCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEECCC-ccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence            45899999999999998 788999988542 1146999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcE---EecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHh
Q 032159           84 HPNVYPSGTV---CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQV  141 (146)
Q Consensus        84 HpnV~~~G~i---cl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~  141 (146)
                      ||||+.+|+|   |+++|.   +|+|+++|.+||.+|+++|.+|++++|+|++||++|++|
T Consensus        99 HPNV~~~G~icisCL~iL~---~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           99 MSCVDNCGRVIKNNLHILK---NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CTTBCTTSBBCGGGSHHHH---TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             cCCCccCCeEehhhccccc---CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            9999999999   888886   499999999999999999999999999999999999876

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=2.7e-45  Score=262.83  Aligned_cols=130  Identities=27%  Similarity=0.446  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (146)
                      .+.+||++|+++|++++. ++   +..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~----~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP   83 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPS----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHP   83 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EEC----SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCC----CCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccc
Confidence            467999999999998763 33   233    7999999999999999999999999999999999999999999999999


Q ss_pred             ccC-CCCcEEecCCCCCCCCCccCcHHHHHHHH-HHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           86 NVY-PSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        86 nV~-~~G~icl~~l~~~~~W~p~~~l~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||+ .+|+||+++|.+  +|+|+++|.+||.+| +++|.+|++++|+|.+||++|++|+++|
T Consensus        84 Ni~~~~G~iCl~iL~~--~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y  143 (171)
T 1yf9_A           84 NVDERSGSVCLDVINQ--TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGF  143 (171)
T ss_dssp             TBCTTTCBBCHHHHHH--HCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHH
T ss_pred             cCcccCCeEecccccc--CCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            999 599999999987  899999999999997 7999999999999999999999999987

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=8.4e-45  Score=252.36  Aligned_cols=133  Identities=24%  Similarity=0.393  Sum_probs=117.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHc-CCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 032159            1 MSGGGIARGRLTEERKAWRKN-HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~-~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (146)
                      ||. ..+.+||++|+++++++ ++.++++.+... +..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus         2 m~~-~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~-~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   79 (138)
T 1jat_B            2 MSK-VPRNFRLLEELEKGEKGFGPESCSYGLADS-DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI   79 (138)
T ss_dssp             -CC-CCHHHHHHHHHHHHHC----CCEEEEESST-TCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             cch-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-CCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence            662 46789999999999998 788999988542 113699999999999999999999999999999999999999999


Q ss_pred             cCccccccCCC-CcE--EecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 032159           80 QGFFHPNVYPS-GTV--CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF  138 (146)
Q Consensus        80 t~i~HpnV~~~-G~i--cl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~  138 (146)
                      |++|||||+.+ |+|  |+++|.   +|+|+++|.+||.+|+++|.+|++++|+|++||++|
T Consensus        80 t~i~HPnv~~~~G~i~~cL~~l~---~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           80 SKINLPCVNPTTGEVQTDFHTLR---DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             BCCCCTTBCTTTCBBCTTSHHHH---TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             cccccCCEeCCCCEEeeecccCC---CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            99999999985 999  899885   599999999999999999999999999999998765

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=1.9e-43  Score=250.39  Aligned_cols=129  Identities=22%  Similarity=0.343  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCC-eEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159            5 GIARGRLTEERKAWRKNHPHG-FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (146)
                      ..+.+||+|||++++++++++ +++.+..++ ..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~-d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  102 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDE-DMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  102 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTT-CTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEecCCc-cccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence            568999999999999998888 777764321 014999999999999999999999999999999999999999999999


Q ss_pred             ccccC-CCCcEEecCCC--CCCCCCccCcHHHHHHHHHHhh-cCCCCCCCCCHHHHH
Q 032159           84 HPNVY-PSGTVCLSILN--EDNGWRPAITVKQILVGIQDLL-DQPNPADPAQTDGYQ  136 (146)
Q Consensus        84 HpnV~-~~G~icl~~l~--~~~~W~p~~~l~~vl~~i~~ll-~~p~~~~p~n~~aa~  136 (146)
                      ||||+ .+|+||+++|.  +  +|+|+++|++||.+|+++| .+||+++|+|.|||.
T Consensus       103 HPNV~~~~G~ICl~iL~~~~--~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~  157 (160)
T 2a4d_A          103 MNGVNSSNGVVDPRAISVLA--KWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC  157 (160)
T ss_dssp             CTTBCTTTCBBCGGGSHHHH--TCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred             eCCEECCCCEEehhhcCCcc--CCCccCcHHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence            99999 69999999997  6  8999999999999999999 579999999999983

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=3e-43  Score=240.81  Aligned_cols=117  Identities=26%  Similarity=0.515  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-cc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FH   84 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H   84 (146)
                      .|.+||++|+++++++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus         6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~----~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H   81 (125)
T 2fo3_A            6 NANYRIQKELHNFLNNPPINCTLDVHP----NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH   81 (125)
T ss_dssp             ---CHHHHHHHHHHHSCCTTEEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCc----chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence            478999999999999999999998866    8999999999999999999999999999999999999999999996 99


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCC
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD  128 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~  128 (146)
                      |||+.+|+||+++|.+  +|+|++++.+||.+|+++|.+|+...
T Consensus        82 Pnv~~~G~iCl~iL~~--~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           82 THVYSNGDICLSLLGD--DYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             TTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHC------
T ss_pred             CcCCCCCEEEchhcCC--CCCCCCcHHHHHHHHHHHHhCccccc
Confidence            9999999999999987  89999999999999999999998753

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.7e-42  Score=239.11  Aligned_cols=116  Identities=27%  Similarity=0.544  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-c
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-F   83 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~   83 (146)
                      +.+.+||++|+++++++++.|+.+.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |
T Consensus        19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~----~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~   94 (136)
T 2h2y_A           19 GNANYRIQKELNNFLKNPPINCTIDVHP----SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPK   94 (136)
T ss_dssp             TSHHHHHHHHHHHHHHSCCTTEEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEEecc----ccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCC
Confidence            4689999999999999999999998876    8999999999999999999999999999999999999999999996 9


Q ss_pred             ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCC
Q 032159           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP  126 (146)
Q Consensus        84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~  126 (146)
                      ||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|+.
T Consensus        95 HPnv~~~G~ICl~iL~~--~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           95 HTHVYSNGDICLSVLGD--DYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             CTTBCTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CCcCCCCCEEECccccC--CCCCCCcHHHHHHHHHHHHhCcCc
Confidence            99999999999999987  899999999999999999999875

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=9.9e-43  Score=249.13  Aligned_cols=128  Identities=23%  Similarity=0.343  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCC-eEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159            5 GIARGRLTEERKAWRKNHPHG-FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (146)
                      +.+.+||++||+++++++++| +++.+..++ ..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus        34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~-d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDE-DMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CCHHHHHHHHHHHHHHCCGGGCEEEEESSTT-CSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence            458999999999999998888 667663321 024999999999999999999999999999999999999999999999


Q ss_pred             ccccC-CCCcEEecCCC--CCCCCCccCcHHHHHHHHHHhhc-CCCCCCCCCHHHH
Q 032159           84 HPNVY-PSGTVCLSILN--EDNGWRPAITVKQILVGIQDLLD-QPNPADPAQTDGY  135 (146)
Q Consensus        84 HpnV~-~~G~icl~~l~--~~~~W~p~~~l~~vl~~i~~ll~-~p~~~~p~n~~aa  135 (146)
                      ||||+ .+|+||+++|.  +  +|+|+++|.+||.+|+++|. +||.++|+|.|||
T Consensus       113 HPNV~~~~G~ICl~iL~~~~--~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          113 MNGVNSSNGVVDPRAISVLA--KWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             CSSBCSSSCBBCTTTCHHHH--TCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             cCCEeCCCCEEEhhhcCCCC--CCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            99999 79999999997  5  89999999999999999996 5999999999987

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-41  Score=235.05  Aligned_cols=109  Identities=34%  Similarity=0.660  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEe--ecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc--
Q 032159            8 RGRLTEERKAWRKNHPHGFVAK--PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF--   83 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~--~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--   83 (146)
                      .+||++|++++++++++|+++.  +.+    +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|  
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~   99 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSVQ----NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV   99 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCC----CSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeCc----cccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence            4999999999999999999864  544    79999999999999999999999999999999999999999999999  


Q ss_pred             ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhc
Q 032159           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (146)
Q Consensus        84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~  122 (146)
                      ||||+.+|+||+++|.+  +|+|+++|++||.+|+++|.
T Consensus       100 HPNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          100 HPHVYSNGHICLSILTE--DWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             BTTBCTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHTC
T ss_pred             CccCCCCCeEEchhcCC--CCCCCCcHHHHHHHHHHHhC
Confidence            99999999999999987  89999999999999999974

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=9.3e-41  Score=258.37  Aligned_cols=138  Identities=30%  Similarity=0.541  Sum_probs=124.6

Q ss_pred             chHHHHHHHHHHHHHHHcCCCC----eEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 032159            4 GGIARGRLTEERKAWRKNHPHG----FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (146)
Q Consensus         4 ~~~~~~Rl~~El~~l~~~~~~~----~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (146)
                      ++.+.+||++|+++|+++++++    +.+.+..    +|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.
T Consensus        74 s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~e----dnl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           74 SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDE----ERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEES----SCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCcccceeecccC----CCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            3789999999999999988775    4455555    7999999999999999999999999999999999999999999


Q ss_pred             cC-----ccccccCCCCcEEecCCCC-----CCCCCccC-cHHHHHHHHHHhhc--CCCCCCCCCHHH--HHHHHHhHhh
Q 032159           80 QG-----FFHPNVYPSGTVCLSILNE-----DNGWRPAI-TVKQILVGIQDLLD--QPNPADPAQTDG--YQLFIQVLYW  144 (146)
Q Consensus        80 t~-----i~HpnV~~~G~icl~~l~~-----~~~W~p~~-~l~~vl~~i~~ll~--~p~~~~p~n~~a--a~~~~~~~~~  144 (146)
                      |+     +|||||+.+|+||+++|..     .++|+|++ +|.+||.+|+++|.  +|++++|+|.++  +.+|++|+++
T Consensus       150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~  229 (323)
T 3ceg_A          150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSRE  229 (323)
T ss_dssp             CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHH
T ss_pred             ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHH
Confidence            98     9999999999999999972     13899999 89999999999995  788899999987  6789999887


Q ss_pred             h
Q 032159          145 F  145 (146)
Q Consensus       145 f  145 (146)
                      |
T Consensus       230 Y  230 (323)
T 3ceg_A          230 Y  230 (323)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.8e-38  Score=229.35  Aligned_cols=133  Identities=24%  Similarity=0.413  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.+||++||++|++++++++.+.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  |
T Consensus        13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~   86 (187)
T 2f4w_A           13 TTATQRLKQDYLRIKKDPVPYICAEPLP----SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--N   86 (187)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--C
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--C
Confidence            4578999999999999999999999876    899999999999999999999999999999999999999999999  9


Q ss_pred             cccCCCCcEEecCCCC-CCCCCccCcHHHHHHHHHHhhcCCCCCCC---CCHHHHHHHHHhHh
Q 032159           85 PNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPNPADP---AQTDGYQLFIQVLY  143 (146)
Q Consensus        85 pnV~~~G~icl~~l~~-~~~W~p~~~l~~vl~~i~~ll~~p~~~~p---~n~~aa~~~~~~~~  143 (146)
                      |||+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+|+++..   ...+..+.|..+..
T Consensus        87 ~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g~~~~~~~~r~~~a~~s~  149 (187)
T 2f4w_A           87 GRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSL  149 (187)
T ss_dssp             SSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHH
T ss_pred             ceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHH
Confidence            9999999999999941 12899999999999999999999998643   23444555555544

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=1.6e-38  Score=230.34  Aligned_cols=119  Identities=18%  Similarity=0.378  Sum_probs=110.7

Q ss_pred             chHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCccEEEEEEcCC-CCCCCCC-----------CEEEEEEEeCCC
Q 032159            4 GGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGK-TGTDWEG-----------GYFPLTLYFSED   68 (146)
Q Consensus         4 ~~~~~~Rl~~El~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~gp-~~tpy~g-----------g~f~~~i~fp~~   68 (146)
                      ++.+.+||++||++|++++   +.++++.+.+    +|+++|+++|.|| ++|||+|           |.|+++|.||++
T Consensus        25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~----dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~  100 (186)
T 1zuo_A           25 SVQASDRLMKELRDIYRSQSYKTGIYSVELIN----DSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDN  100 (186)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEET----TEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcC----CccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCC
Confidence            3789999999999999987   6889998877    7999999999997 9999998           899999999999


Q ss_pred             CCCCCCeeeeccCcccc-ccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCC
Q 032159           69 YPSKPPKCKFPQGFFHP-NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPA  127 (146)
Q Consensus        69 YP~~pP~v~f~t~i~Hp-nV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~  127 (146)
                      ||++||+|+|.|++||| ||+.+|+||+++|..+ +|+|+++|.+||.+|+++|.+|+..
T Consensus       101 YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~-~WsP~~ti~~VL~sI~slL~~p~a~  159 (186)
T 1zuo_A          101 FPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-GWSSAYSIESVIMQINATLVKGKAR  159 (186)
T ss_dssp             TTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTT-TCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCCeEEEeCCccCCCccCCCCcEEeccCCCC-CCCCcCcHHHHHHHHHHHHcCCChh
Confidence            99999999999999999 6999999999999732 8999999999999999999988764

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.95  E-value=1.1e-29  Score=178.02  Aligned_cols=115  Identities=18%  Similarity=0.255  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCC----------EEEEEEEeCCCCCCCCCeee
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPKCK   77 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~   77 (146)
                      .+||++|++.|++.      +.+..    +|++.|.+.+.||+||+|+||          .|++++.||++||.+||+|+
T Consensus        34 ~~RL~eE~k~L~k~------v~p~k----~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~  103 (172)
T 2z6o_A           34 VQRLKEEYQSLIRY------VENNK----NADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA  103 (172)
T ss_dssp             HHHHHHHHHHHHHH------HHHHH----HTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred             HHHHHHHHHHHHHH------hccCc----cccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence            99999999999883      45555    799999999999999999999          99999999999999999999


Q ss_pred             eccC-ccccccCCCCcEEecCCCCC--CCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH
Q 032159           78 FPQG-FFHPNVYPSGTVCLSILNED--NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ  140 (146)
Q Consensus        78 f~t~-i~HpnV~~~G~icl~~l~~~--~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~  140 (146)
                      |.++ +||||||.+|+||+++|...  ..|+|.++|..+|.-        ....++..|+..+...
T Consensus       104 F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~~  161 (172)
T 2z6o_A          104 VPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQK  161 (172)
T ss_dssp             CGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHHH
T ss_pred             eCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHHc
Confidence            9998 99999999999999999441  035599999999842        2233455666665554

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.84  E-value=6.3e-21  Score=134.60  Aligned_cols=114  Identities=19%  Similarity=0.274  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHcCC---CCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCE---EEEEEEeCCCCCCCCCeeeecc-
Q 032159            8 RGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY---FPLTLYFSEDYPSKPPKCKFPQ-   80 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~---~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t-   80 (146)
                      .+|..+|+..+.+.-+   +...+...+    +...++.+.+.|.-.++|+|+.   |.+.|.||.+||++||.|.|.+ 
T Consensus        30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~----dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~  105 (162)
T 3r3q_A           30 GRTTFHDSLALLDNFHSLRPRTRVFTHS----DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLE  105 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECT----TSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGG
T ss_pred             hhHHHHHHHHHHHhCCCCceeeeeEEcC----CCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECC
Confidence            3677788888766432   122223333    4555666666776668999998   8899999999999999998865 


Q ss_pred             ------C---cc-ccccCCCCcEEecCCCCCCCCCc-cCcHHHHHHHHHHhhcCCCCCC
Q 032159           81 ------G---FF-HPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLDQPNPAD  128 (146)
Q Consensus        81 ------~---i~-HpnV~~~G~icl~~l~~~~~W~p-~~~l~~vl~~i~~ll~~p~~~~  128 (146)
                            +   ++ |||||.+|+||+.+|.   +|++ +.++.++|.+|+++|.+|+++.
T Consensus       106 t~~m~~~~~~I~~hpnVD~~G~I~lpyL~---~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          106 NFDMNTISSSLPIQEYIDSNGWIALPILH---AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             GCCTTTSCTTSTHHHHBCTTSBBCCGGGG---SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             CccccccccccCCCCCCCCCCcEeCcccc---cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence                  1   77 9999999999999995   5999 5799999999999999999875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.74  E-value=5.6e-19  Score=121.38  Aligned_cols=87  Identities=22%  Similarity=0.410  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCC----------EEEEEEEeCCCCCCCCCe
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPK   75 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~   75 (146)
                      .-..||+.||..|.+-      +..-.    .+-..|...+.|++||+|.|+          .|+++++||.+||.+||+
T Consensus        34 ~w~~RlkeEy~alI~y------v~~nK----~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe  103 (168)
T 3kpa_A           34 KWTARLKEEYASLITY------VEHNK----ASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE  103 (168)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHH----HTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             HHHHHHHHHHHHHHHH------HHhcc----cccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence            3578999999999652      22212    355568888999999999999          999999999999999999


Q ss_pred             eeeccC-ccccccCCCCcEEecCCCCCCCCCcc
Q 032159           76 CKFPQG-FFHPNVYPSGTVCLSILNEDNGWRPA  107 (146)
Q Consensus        76 v~f~t~-i~HpnV~~~G~icl~~l~~~~~W~p~  107 (146)
                      |+|.+. .+|||+|.+|+||++++     |+|.
T Consensus       104 I~Fp~ldgkt~kmYr~GkICLdIh-----wkPl  131 (168)
T 3kpa_A          104 IALPELEGKTVKMYRGGKICMTTH-----FFPL  131 (168)
T ss_dssp             CBCGGGTTTCSSEETTTEECCCTT-----HHHH
T ss_pred             eecccccCcCccccCCCcEEeccc-----cchh
Confidence            999995 89999999999999974     6665

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.63  E-value=1.9e-15  Score=104.84  Aligned_cols=104  Identities=21%  Similarity=0.351  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHcCCC-CeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeeeccC------
Q 032159           11 LTEERKAWRKNHPH-GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQG------   81 (146)
Q Consensus        11 l~~El~~l~~~~~~-~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~------   81 (146)
                      ..+|...+.+.-+. ........ ....++..|.++|.    .+|+|+.|.  +.|.||++||++||.| |.++      
T Consensus        25 t~~dv~~vl~~yp~L~p~~~~y~-G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I   98 (146)
T 3obq_A           25 TVRETVNVITLYKDLKPVLDSYG-TGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTI   98 (146)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEESS-STTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEE
T ss_pred             hHHHHHHHHHhCCCCceEeeeee-CChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEE
Confidence            34566666554321 11111111 33479999999998    689999998  4999999999999999 6665      


Q ss_pred             ccccccCCCCcEEecCCCCCCCCCc-cCcHHHHHHHHHHhhcC
Q 032159           82 FFHPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLDQ  123 (146)
Q Consensus        82 i~HpnV~~~G~icl~~l~~~~~W~p-~~~l~~vl~~i~~ll~~  123 (146)
                      ..|||||.+|+||+..|.+   |++ ..+|.+++..|+++|.+
T Consensus        99 ~~~~~Vd~~G~i~lpyL~~---W~~~~snL~~ll~~l~~~F~~  138 (146)
T 3obq_A           99 KTGKHVDANGKIYLPYLHE---WKHPQSDLLGLIQVMIVVFGD  138 (146)
T ss_dssp             CCBTTBCTTCBBCCHHHHT---CCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEecccccc---cCCCCCCHHHHHHHHHHHHhh
Confidence            5899999999999999954   988 67999999999999943

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.74  E-value=0.011  Score=39.13  Aligned_cols=68  Identities=19%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      ...+...|+..|..--+..+.+.  .    .....+.+.+....+..-+.-.+.+.|.+|++||..||.+...+
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~--~----~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL--S----ENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC--C----SSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc--c----CCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            35667889988876555555432  2    23456666666322222234478899999999999999997754

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=96.08  E-value=0.057  Score=35.63  Aligned_cols=70  Identities=16%  Similarity=0.119  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCC--CCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDW--EGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      .+...|+..|..--+..+.+....  .......+.+.+..+.+..-  ..-.+.+.|.+|++||..+|.+...+
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~~--~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKGN--GRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECCT--TSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceEEecCC--CCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            457788988876555555543211  00134455666653222111  12478899999999999999998765

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=95.91  E-value=0.049  Score=38.78  Aligned_cols=83  Identities=16%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccC
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   88 (146)
                      ++|.+|+.+|-=+.    .+. .+    .++....+++....     |..+.++|.++.+||.++|.+...-|.  |.  
T Consensus         4 ~~li~Ei~~iGW~~----l~~-id----~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~--   65 (186)
T 3zqs_A            4 SSLIEEIGTLGWDK----LVY-AD----TCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF--   65 (186)
T ss_dssp             CSHHHHHHHHCGGG----EEE-EC----TTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC--
T ss_pred             HHHHHHHHHhCCce----eee-ec----CCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc--
Confidence            36788888872221    111 12    57888888887433     679999999999999999988765443  11  


Q ss_pred             CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhh
Q 032159           89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLL  121 (146)
Q Consensus        89 ~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll  121 (146)
                                ..  .|.+..++.+++...+..+
T Consensus        66 ----------~~--~w~~~ssL~~v~~qF~~~L   86 (186)
T 3zqs_A           66 ----------CA--SWTPQSSLISIYSQFLAAI   86 (186)
T ss_dssp             ----------CC--CCCTTCCHHHHHHHHHHHH
T ss_pred             ----------cc--ccCCCccHHHHHHHHHHHH
Confidence                      01  6999999999988776665

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.089  Score=35.15  Aligned_cols=71  Identities=17%  Similarity=0.198  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCC--CCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDG--SVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~--~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      .+-..|+..|..--+..+...-....+  ......+.+.+.+..+ .-..-.+.+.|.+|++||..||.|.+.+
T Consensus        13 e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           13 EIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             HHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            345677777765444443321100000  0124566777774322 1123478899999999999999998764

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.41  E-value=0.045  Score=36.22  Aligned_cols=67  Identities=10%  Similarity=0.043  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHcCCC--CeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 032159            9 GRLTEERKAWRKNHPH--GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~--~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (146)
                      .+...|+..|..--+.  .+.+.-..   ..+...+.+.+.... ..=..-.+.+.|.+|++||..+|.+...
T Consensus        10 e~q~~EleaL~SIy~d~~e~~~~~~~---~~~~~~f~i~l~~~~-~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           10 EPVQEELSVLAAIFCRPHEWEVLSRS---ETDGTVFRIHTKAEG-FMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             HHHHHHHHHHHHHHCCTTTCCCSEEC---SSSCEEEEEEEECCT-TTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCceEEecCC---CCCCCeEEEEecCCC-CCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            4566788777653221  23221111   023457777776322 1111247899999999999999999765

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=94.75  E-value=0.2  Score=34.23  Aligned_cols=24  Identities=13%  Similarity=0.080  Sum_probs=21.4

Q ss_pred             EEEEEEEeCCCCCCCCCeeeeccC
Q 032159           58 YFPLTLYFSEDYPSKPPKCKFPQG   81 (146)
Q Consensus        58 ~f~~~i~fp~~YP~~pP~v~f~t~   81 (146)
                      .+.+.|.+|.+||..+|.|...+.
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~~   99 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRSS   99 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEECS
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEeC
Confidence            799999999999999999986653

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=93.82  E-value=0.5  Score=31.25  Aligned_cols=71  Identities=13%  Similarity=0.042  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCC-CCCCccEEEEEEcCCCC-C-CCCCCEEEEEEEeCCCCCCCCCeeeec
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKD-GSVNLMIWECIIPGKTG-T-DWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~   79 (146)
                      ..+...|+..|..--+..+........ .........+.+.. .+ . .-..-.+.+.|.||++||..+|.|...
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYP-QGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECC-TTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEec-CCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence            455678888887654455543211100 00013455666662 22 1 001246889999999999999999874

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=93.26  E-value=0.38  Score=32.65  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=21.4

Q ss_pred             CEEEEEEEeCCCCCCCCCeeeeccC
Q 032159           57 GYFPLTLYFSEDYPSKPPKCKFPQG   81 (146)
Q Consensus        57 g~f~~~i~fp~~YP~~pP~v~f~t~   81 (146)
                      -.+.+.|.+|.+||..||.+.....
T Consensus        73 ~~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           73 AMFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             ceEEEEEECCCCCCCCCCeEEEEcc
Confidence            3688999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	3e-39
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	4e-33
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-33
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-32
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	2e-30
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	2e-30
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	4e-30
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	1e-29
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-29
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	7e-29
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	1e-28
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	2e-28
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	6e-28
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	6e-28
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	1e-27
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-27
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	4e-27
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	9e-27
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	3e-26
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	2e-25
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	5e-25
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	5e-25
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-24
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	7e-24
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	2e-23
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	5e-23
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	1e-20
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	2e-19
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	3e-18
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	2e-16
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	5e-16

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score =  127 bits (321), Expect = 3e-39
 Identities = 90/137 (65%), Positives = 105/137 (76%), Gaps = 1/137 (0%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct: 1   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 60

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
            F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct: 61  LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNE 120

Query: 124 PNPADPAQTDGYQLFIQ 140
           PN  DPAQ + Y ++ Q
Sbjct: 121 PNIQDPAQAEAYTIYCQ 137

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  112 bits (281), Expect = 4e-33
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 14/140 (10%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            L ++    R+    GF A     +   ++  WE ++ G   T +EGG+F   L F  DY
Sbjct: 4   LLKKQLADMRRVPVDGFSAGLVDDN---DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQ 118
           P KPPK KF    +HPN+   G VC+SIL++              W P  TV+ IL+ + 
Sbjct: 61  PQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI 120

Query: 119 DLLDQPNPADPAQTDGYQLF 138
            +L  PN   PA  D  ++ 
Sbjct: 121 SMLTDPNFESPANVDAAKMQ 140

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score =  112 bits (280), Expect = 6e-33
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 14/144 (9%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
            A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F   L F
Sbjct: 3   TAQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEF 59

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQIL 114
            +DYP  PPK  F     HPN+YP+G VC+SIL+               W P  +V++IL
Sbjct: 60  PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 119

Query: 115 VGIQDLLDQPNPADPAQTDGYQLF 138
           + +  +L +PN    A  D   L+
Sbjct: 120 LSVMSMLSEPNIESGANIDACILW 143

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score =  110 bits (277), Expect = 1e-32
 Identities = 56/132 (42%), Positives = 70/132 (53%), Gaps = 6/132 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F 
Sbjct: 4   ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFD 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY +G +CL IL     W P   V  IL  IQ L + PNP
Sbjct: 60  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNR--WTPTYDVASILTSIQSLFNDPNP 117

Query: 127 ADPAQTDGYQLF 138
           A PA  +   LF
Sbjct: 118 ASPANVEAATLF 129

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score =  105 bits (263), Expect = 2e-30
 Identities = 46/129 (35%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +    +   G  A P+      NL  W   + G   T +E   + LTL F  DY
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDGD----NLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +Q LL +PN A P
Sbjct: 69  PYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASP 126

Query: 130 AQTDGYQLF 138
                  ++
Sbjct: 127 LNAQAADMW 135

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-30
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +     Y
Sbjct: 9   RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 68

Query: 70  PSKPPKCKFPQGFFHPNVYPS-GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP-NPA 127
           P  PP  +F        V  S G V    ++    W+ + ++K +L  ++ L+    N  
Sbjct: 69  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMK 128

Query: 128 DPAQTDG 134
            P   +G
Sbjct: 129 LPQPPEG 135

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  104 bits (259), Expect = 4e-30
 Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 6/133 (4%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E +   ++ P    A P       +L  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRIQKELQDLGRDPPAQCSAGPVGD----DLFHWQATIMGPPESPYQGGVFFLTIHF 56

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL       PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWS--PALTISKVLLSICSLLCDPN 114

Query: 126 PADPAQTDGYQLF 138
           P DP   +  +++
Sbjct: 115 PDDPLVPEIARIY 127

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-29
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
            + RL +E  A + + P G     ++     ++  W   + G  GT +EG  F L   FS
Sbjct: 4   MQKRLQKELLALQNDPPPGMTLNEKSVQN--SITQWIVDMEGAPGTLYEGEKFQLLFKFS 61

Query: 67  EDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
             YP   P+  F       HP+VY +G +CLSIL ED  W PA++V+ + + I  +L
Sbjct: 62  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPALSVQSVCLSIISML 116

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-29
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +  R+ +E      + P    A P+      N+  W   I G  G+ +EGG F L + FS
Sbjct: 3   SAKRIQKELAEITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDITFS 58

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NP
Sbjct: 59  PDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNP 116

Query: 127 ADPAQTDGYQLF 138
           ADP        +
Sbjct: 117 ADPLVGSIATQY 128

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score =  100 bits (251), Expect = 7e-29
 Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +R RL  + K  +++ P G    P       N++ WE II G   T +E G F L+L F+
Sbjct: 4   SRRRLMRDFKKLQEDPPAGVSGAPTED----NILTWEAIIFGPQETPFEDGTFKLSLEFT 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY  G++CL IL       P   V  IL  IQ LLD+PNP
Sbjct: 60  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWS--PTYDVAAILTSIQSLLDEPNP 117

Query: 127 ADPAQTDGYQLF 138
             PA +   QL+
Sbjct: 118 NSPANSLAAQLY 129

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-28
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A   L  +    ++N+  G  AKP ++    ++M WE  I G   + W+G  F LT++
Sbjct: 3   GRAYLLLHRDFCDLKENNYKGITAKPVSE----DMMEWEVEIEGLQNSVWQGLVFQLTIH 58

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGT-VCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           F+ +Y   PP  KF    FHPNV P     C+  L+    W    T+  IL+ +Q +L  
Sbjct: 59  FTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSN 118

Query: 124 PNPADPAQTDGYQLFIQ 140
           P   +P   +  ++ ++
Sbjct: 119 PVLENPVNLEAARILVK 135

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 99.7 bits (248), Expect = 2e-28
 Identities = 25/122 (20%), Positives = 46/122 (37%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +   K       +        + +  W   I G   ++ E   + L++    +Y
Sbjct: 8   RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 67

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P  PPK  F      P V P+     +  +    W+ A T++ +L+ ++  +  P     
Sbjct: 68  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 127

Query: 130 AQ 131
            Q
Sbjct: 128 RQ 129

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 6e-28
 Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G+ R R+ +E +        G  A+P+      N   +  +I G   + +EGG F L L+
Sbjct: 2   GLPR-RIIKETQRLLAEPVPGIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELF 56

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  P
Sbjct: 57  LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAP 114

Query: 125 NPADPAQTDGYQLF 138
           NP DP   D  + +
Sbjct: 115 NPDDPLANDVAEQW 128

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 6e-28
 Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 14/126 (11%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            L  +     KN   GF A     +   +L  WE +I G   T +EGG F   L F +DY
Sbjct: 3   LLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 59

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQ 118
           P +PPK KF    +HPNV  +G VC+SIL+E              W P  TV+ I++ + 
Sbjct: 60  PLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVI 119

Query: 119 DLLDQP 124
            +L  P
Sbjct: 120 SMLADP 125

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 97.9 bits (243), Expect = 1e-27
 Identities = 45/129 (34%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E      +   G  A PE+     NL  W   I G  GT +E   + L+L F   Y
Sbjct: 5   RLQQELMTLMMSGDKGISAFPESD----NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P   P  KF    +HPNV   G + L IL E   W     V+ IL+ IQ LL +PN   P
Sbjct: 61  PYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVRTILLSIQSLLGEPNIDSP 118

Query: 130 AQTDGYQLF 138
             T   +L+
Sbjct: 119 LNTHAAELW 127

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 97.9 bits (243), Expect = 1e-27
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HPN+   G +CL +L  +  W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 63  PMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN--WSPALQIRTVLLSIQALLASPNPNDP 120

Query: 130 AQTDGYQLFIQ 140
              D  + +I+
Sbjct: 121 LANDVAEDWIK 131

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 96.4 bits (239), Expect = 4e-27
 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +  RK     F      +    NL+ W+ +I       ++ G F + + F  +Y
Sbjct: 3   RLMKELEEIRKCGMKNFRNIQVDEA---NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 58

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK  F    +HPN+   G VCL +++    W+PA    Q++  +  L++ P P  P
Sbjct: 59  PFKPPKITFKTKIYHPNIDEKGQVCLPVISA-ENWKPATKTDQVIQSLIALVNDPQPEHP 117

Query: 130 AQTDGYQLF 138
            + D  + +
Sbjct: 118 LRADLAEEY 126

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 96.0 bits (238), Expect = 9e-27
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +    +Y
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK +F    +HPN+          + ++  W P IT+K  L+ +Q LL  P P DP
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNA-WSPVITLKSALISLQALLQSPEPNDP 120

Query: 130 AQTDGYQLF 138
              +  Q +
Sbjct: 121 QDAEVAQHY 129

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 3e-26
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E +  +K  P              N+++W  ++       +    F L + F 
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDA---NVLVWHALL-LPDQPPYHLKAFNLRISFP 56

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            +YP KPP  KF    +HPNV  +G +CL I++    W+P     Q+L  +  L+++PN 
Sbjct: 57  PEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS-SENWKPCTKTCQVLEALNVLVNRPNI 115

Query: 127 ADPAQTDGYQLFIQ 140
            +P + D   L  Q
Sbjct: 116 REPLRMDLADLLTQ 129

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.6 bits (229), Expect = 2e-25
 Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           M+   IA  R+  E K   K+                N       I G   T +EGG + 
Sbjct: 1   MAN--IAVQRIKREFKEVLKSEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQ 57

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q 
Sbjct: 58  LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQA 115

Query: 120 LLDQPNPADPAQTDGYQLF 138
           LL    P DP        +
Sbjct: 116 LLAAAEPDDPQDAVVANQY 134

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 5e-25
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A+ R+ ++                       +L+ ++ +I       ++ G F  +    
Sbjct: 4   AQLRIQKDINELNLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKVG 57

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           + YP  PPK K     +HPN+   G VCL+IL ED  W+P +T+  I+ G+Q L  +PNP
Sbjct: 58  QGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED--WKPVLTINSIIYGLQYLFLEPNP 115

Query: 127 ADPAQTDGYQLFIQ 140
            DP   +  ++   
Sbjct: 116 EDPLNKEAAEVLQN 129

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 91.8 bits (227), Expect = 5e-25
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 7/132 (5%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R  +   A   +  HG  A+        ++  W   I G  GT +EGG+F L +    DY
Sbjct: 18  RAHDSEPAATHSTSHGVSAQIVGG----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 73

Query: 70  PSKPPKCKFPQGFFHPN-VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           P  PPK KF    +HPN    +G +CL IL  +    PA+T++  L+ IQ +L  P P D
Sbjct: 74  PYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWS--PALTIRTALLSIQAMLADPVPTD 131

Query: 129 PAQTDGYQLFIQ 140
           P   +  ++ I+
Sbjct: 132 PQDAEVAKMMIE 143

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 89.0 bits (220), Expect = 2e-24
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E   +  N P              N+ IW     G   T +    + L + F +DY
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPN----NIRIWIVKYVGLENTIYANEVYKLKIIFPDDY 57

Query: 70  PSKPPKCKFPQ-GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
           P KPP   F Q    H +VY +G +CLS+L +D  + P++++  +++ I  +L
Sbjct: 58  PLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD--YNPSLSISGLVLSIISML 108

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 7e-24
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL ++    +K+      A+P       N++ W  ++ G   T +EGGY+   L F 
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPS----NILEWHYVVRGPEMTPYEGGYYHGKLIFP 57

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN-GWRPAITVKQILVGIQDLLDQPN 125
            ++P KPP               +  +CLSI +     W PA +V  IL G+   + +  
Sbjct: 58  REFPFKPPSIYMITPNGRFKC--NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKG 115

Query: 126 PADPA 130
           P   +
Sbjct: 116 PTLGS 120

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 87.5 bits (216), Expect = 2e-23
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            + +E      + P G    P  +    +L   +  I G  GT + GG F + L   +D+
Sbjct: 10  LVYKEVTTLTADPPDGIKVFPNEE----DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 65

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P+ PPK  F    FHPNV  +G +C+++L  D  W   + ++ +L+ I+ LL  PNP   
Sbjct: 66  PASPPKGYFLTKIFHPNVGANGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESA 123

Query: 130 AQTDGYQLFIQ 140
              +  +L ++
Sbjct: 124 LNEEAGRLLLE 134

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 5e-23
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL  E        P G     +       +      I G   T +E G F L +   E Y
Sbjct: 6   RLKRELHMLATEPPPGITCWQDKD----QMDDLRAQILGGANTPYEKGVFKLEVIIPERY 61

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG--WRPAITVKQILVGIQDLLDQPNPA 127
           P +PP+ +F    +HPN+  +G +CL +L       WRP++ +  +L  IQ L+ +PNP 
Sbjct: 62  PFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPD 121

Query: 128 DPAQTDGYQLF 138
           DP   D    F
Sbjct: 122 DPLMADISSEF 132

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 77.1 bits (189), Expect = 2e-19
 Identities = 25/103 (24%), Positives = 33/103 (32%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
            +  +     G  GT +E G + L +    DYP K P   F     HPNV          
Sbjct: 24  TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD 83

Query: 98  LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ 140
           +                V +  LL  PNP+DP       L   
Sbjct: 84  VINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHA 126

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 3e-18
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 9/96 (9%)

Query: 38  NLMIWECIIPGKTGTDWEGGYF--PLTLYFSEDYPSKPPKCKF-----PQGFFHPNVYPS 90
                   + G     + G  +  P+ L+  + YP  PP C              +V  +
Sbjct: 45  GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDAN 104

Query: 91  GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           G + L  L+E     P   +  ++  +  +     P
Sbjct: 105 GKIYLPYLHEW--KHPQSDLLGLIQVMIVVFGDEPP 138

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (169), Expect = 2e-16
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 19/107 (17%)

Query: 34  DGSVNLMIWECIIPGKTGTDWEGG---YFPLTLYFSEDYPSKPPKCKFPQGF-------- 82
           DG+  L++    I G   T  +G      P+ ++    YP KPP                
Sbjct: 49  DGTPQLLL---SIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISS 105

Query: 83  ---FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
                  +  +G + L IL+       A+ +  ++  +  LL +P  
Sbjct: 106 SLPIQEYIDSNGWIALPILHCW--DPAAMNLIMVVQELMSLLHEPPQ 150

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 5e-16
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 17/147 (11%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG------------KTGTDW 54
           A  RL +E +   ++  +             +L  W   +                    
Sbjct: 5   ASDRLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQILKEKE 63

Query: 55  EGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
              Y  L   F +++P  PP  +          V   G +C+ +L +   W  A +++ +
Sbjct: 64  GIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQG-WSSAYSIESV 122

Query: 114 LVGIQDLLDQPNP--ADPAQTDGYQLF 138
           ++ I   L +        A  + Y L 
Sbjct: 123 IMQINATLVKGKARVQFGANKNQYNLA 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.87
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.82
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.54
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	96.71
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	95.16
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	94.51
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	93.35

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=2.6e-49  Score=276.19  Aligned_cols=139  Identities=29%  Similarity=0.547  Sum_probs=133.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      |+  +.|.+||+||+++++++++.|+++.+..    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         1 m~--~~a~~~L~kE~~~l~~~~~~gi~v~p~~----~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t   74 (148)
T d1yrva1           1 MH--GRAYLLLHRDFCDLKENNYKGITAKPVS----EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT   74 (148)
T ss_dssp             GG--CHHHHHHHHHHHHHHHHCCTTEEEEECS----TTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS
T ss_pred             CC--HHHHHHHHHHHHHHHHCCCCCEEEEECC----CcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeecc
Confidence            66  8899999999999999999999999988    89999999999999999999999999999999999999999999


Q ss_pred             CccccccC-CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           81 GFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        81 ~i~HpnV~-~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ++|||||+ .+|++|+++|...++|+|++||.+||.+|+++|.+|+.++|+|.|||++|++|+++|
T Consensus        75 ~i~HpnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f  140 (148)
T d1yrva1          75 IPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLY  140 (148)
T ss_dssp             CCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHH
T ss_pred             ccccCceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHH
Confidence            99999999 589999999964338999999999999999999999999999999999999999988

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=9.8e-49  Score=273.79  Aligned_cols=135  Identities=41%  Similarity=0.770  Sum_probs=131.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.|.|||++|+++|+++++.|+++.+.+    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~p~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   77 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGAPTE----DNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFH   77 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECC----CchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccc
Confidence            6789999999999999999999999988    899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|.||+++|.+  .|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        78 PnI~~~G~iCl~~l~~--~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f  136 (149)
T d1z3da1          78 PNVYADGSICLDILQN--RWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREY  136 (149)
T ss_dssp             TTBCTTCBBCCGGGTT--SCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHH
T ss_pred             eeEcCCCCEEeccccc--cCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHH
Confidence            9999999999999987  8999999999999999999999999999999999999999988

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=2.4e-48  Score=273.56  Aligned_cols=140  Identities=64%  Similarity=1.185  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      .|.+||++|+++++++++.|+++.|..+ ++.+|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++||
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            6899999999999999999999999875 455699999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|.+|+++|...++|+|++||.+||.+|+++|.+|++++|+|.|||++|++|+++|
T Consensus        82 PnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f  142 (156)
T d2uyza1          82 PNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEY  142 (156)
T ss_dssp             TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             ccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHH
Confidence            9999999999999986558999999999999999999999999999999999999999988

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=3.5e-48  Score=272.02  Aligned_cols=136  Identities=41%  Similarity=0.775  Sum_probs=132.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 032159            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (146)
Q Consensus         4 ~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (146)
                      |+.|.|||++||++|+++++.|+.+.+..    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~p~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~   76 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSASPLP----DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMF   76 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEEECC----CcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCC
Confidence            37899999999999999999999999988    89999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        84 HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||||+.+|.||++++.+  .|+|++++.+||.+|+++|.+|+.++|+|.|||++|++|+++|
T Consensus        77 HPnI~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f  136 (153)
T d1ayza_          77 HPNVYANGEICLDILQN--RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY  136 (153)
T ss_dssp             CTTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHH
T ss_pred             ccCCCCCCccccccccc--cCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999988  8999999999999999999999999999999999999999998

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=4.9e-48  Score=269.97  Aligned_cols=134  Identities=34%  Similarity=0.605  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (146)
                      .|.|||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||
T Consensus         2 ~~~kRi~~E~~~l~~~~~~gi~~~~~~----~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP   77 (148)
T d1y6la_           2 TSAKRIQKELAEITLDPPPNCSAGPKG----DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHC   77 (148)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEEECC----cccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCc
Confidence            589999999999999999999999988    8999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        86 nV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||+++|.||++++.+  .|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        78 nv~~~G~iCl~~l~~--~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f  135 (148)
T d1y6la_          78 NINSQGVICLDILKD--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH  135 (148)
T ss_dssp             TBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHH
T ss_pred             eECCCCeEEEEecCC--cCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHH
Confidence            999999999999987  8999999999999999999999999999999999999999987

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=5.4e-48  Score=273.86  Aligned_cols=138  Identities=37%  Similarity=0.740  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      ..|.|||++|+++|++++++|+++.+..+   +|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++||
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~p~~e---~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAGPKSE---NNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH   78 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSS---SCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEECCc---cchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCcee
Confidence            68999999999999999999999998653   699999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|++|+++|..           .+.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 Pnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f  150 (164)
T d2ucza_          79 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEF  150 (164)
T ss_dssp             TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHH
T ss_pred             ceEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHH
Confidence            9999999999999964           236999999999999999999999999999999999999999988

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=3.9e-48  Score=271.16  Aligned_cols=135  Identities=27%  Similarity=0.553  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      ..+.|||++||++|++++++|+.+.+.+    +|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++||
T Consensus         5 ~~~~kRl~kEl~~l~~~~~~gi~v~p~~----~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (151)
T d1zdna1           5 PHIIRLVYKEVTTLTADPPDGIKVFPNE----EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   80 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEEcC----cchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCC
Confidence            7889999999999999999999999987    899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|.+|++++.+  +|+|+++|.+||.+|+++|.+|+.++|+|.+||++|++|+++|
T Consensus        81 PnI~~~G~ic~~~l~~--~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f  139 (151)
T d1zdna1          81 PNVGANGEICVNVLKR--DWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEY  139 (151)
T ss_dssp             TTBCTTSBBCHHHHTT--TCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHH
T ss_pred             ceecCCCCcccccccc--cCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHH
Confidence            9999999999999987  8999999999999999999999999999999999999999988

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1e-47  Score=268.00  Aligned_cols=134  Identities=34%  Similarity=0.674  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (146)
                      +|.|||++|+++|+++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~~~----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   76 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGPVG----DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   76 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEECC----CchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCcee
Confidence            369999999999999999999999988    8999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        86 nV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||+++|+||++++.+  .|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        77 nV~~~G~iCl~~l~~--~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f  134 (147)
T d1z2ua1          77 NINSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERY  134 (147)
T ss_dssp             TBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             eECCCCCEeeehhcc--cCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHH
Confidence            999999999999988  8999999999999999999999999999999999999999987

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=267.23  Aligned_cols=132  Identities=35%  Similarity=0.551  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      +.|||++|+++|+++++.|+++.+..    +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~----~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   77 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPES----DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN   77 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEET----TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcC----CcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCccc
Confidence            68999999999999999999999877    89999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |+.+|.||++++.+  +|+|++|+.+||.+|+++|.+|++++|+|.+||++|+ |+++|
T Consensus        78 V~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f  133 (146)
T d1i7ka_          78 VDTQGNISLDILKE--KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAF  133 (146)
T ss_dssp             BCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHH
T ss_pred             CCCCCccccccccc--cCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHH
Confidence            99999999999988  8999999999999999999999999999999999995 88877

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=6.4e-48  Score=270.38  Aligned_cols=135  Identities=32%  Similarity=0.620  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.+.|||++|+++|+++++.|+.+.+.+    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         2 ~~~~rRl~~E~~~l~~~~~~g~~~~p~~----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~H   77 (152)
T d1jata_           2 ASLPKRIIKETEKLVSDPVPGITAEPHD----DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH   77 (152)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEEcC----CccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCC
Confidence            4468999999999999999999999988    899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|.+|++++..  .|+|+++|.+||.+|+++|.+|++++|+|.|||++|++|+++|
T Consensus        78 PnI~~~G~icl~~~~~--~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f  136 (152)
T d1jata_          78 PNIDRLGRICLDVLKT--NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGA  136 (152)
T ss_dssp             TTBCTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHH
T ss_pred             CcCCCCCCeeeccccc--cCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHH
Confidence            9999999999999988  8999999999999999999999999999999999999999988

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=3.7e-47  Score=267.01  Aligned_cols=136  Identities=29%  Similarity=0.551  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      +.+||++|+++|.++++.|+++.+.+    +|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         3 ~~~Rl~kE~~~l~~~~~~gi~~~p~~----~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   78 (154)
T d1yh2a1           3 RASRLKRELHMLATEPPPGITCWQDK----DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN   78 (154)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHCcCCCEEEEECC----cchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCC
Confidence            78999999999999999999999987    89999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCCC--CCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159           87 VYPSGTVCLSILNE--DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        87 V~~~G~icl~~l~~--~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~  146 (146)
                      |+++|.+|++++..  .+.|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.
T Consensus        79 V~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~  140 (154)
T d1yh2a1          79 IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFL  140 (154)
T ss_dssp             BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHH
T ss_pred             cCCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHH
Confidence            99999999999974  2379999999999999999999999999999999999999999883

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-47  Score=265.91  Aligned_cols=137  Identities=31%  Similarity=0.540  Sum_probs=131.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 032159            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (146)
                      ||  +.|.+||++|+++++++   ...++.+.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+
T Consensus         1 Ms--~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   74 (154)
T d2bepa1           1 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   74 (154)
T ss_dssp             CC--HHHHHHHHHHHHHHHHCHHHHTTSEEEEECS----SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             Cc--hHHHHHHHHHHHHHHHCCCCCCCcEEEEcCC----CChhheEeeEecCccccccCCeeEEEEeccccccCCCCcce
Confidence            77  89999999999999875   45789999887    89999999999999999999999999999999999999999


Q ss_pred             eccCccccccCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           78 FPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        78 f~t~i~HpnV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |.|++|||||+. +|.+|++++.+  .|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        75 f~t~i~Hpni~~~~g~ic~~~~~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f  141 (154)
T d2bepa1          75 FITKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMF  141 (154)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             ecccCCCCCeeCCCCccccccccc--cCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHH
Confidence            999999999996 89999999988  8999999999999999999999999999999999999999988

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=6e-47  Score=266.34  Aligned_cols=133  Identities=35%  Similarity=0.611  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 032159            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (146)
Q Consensus         6 ~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (146)
                      .+.|||++|+++|+++++.|+++.+..    +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         9 ~~~kRl~kEl~~l~~~~~~gi~~~p~~----~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   84 (156)
T d2e2ca_           9 SVSKRLQQELRTLLMSGDPGITAFPDG----DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHP   84 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHhHCCCCCEEEEECC----CcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCC
Confidence            478999999999999999999999977    8999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        86 nV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      ||+.+|.||+++|.+  .|+|+++|.+||.+|+++|.+|++++|+|.+||++|+++ .+|
T Consensus        85 nv~~~G~icl~~l~~--~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~n~-~~y  141 (156)
T d2e2ca_          85 NVDQSGNICLDILKE--NWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQ-TEY  141 (156)
T ss_dssp             TBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTTCH-HHH
T ss_pred             CCCCCCCccccccCC--CCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHCH-HHH
Confidence            999999999999987  899999999999999999999999999999999999744 455

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=6e-47  Score=264.64  Aligned_cols=132  Identities=33%  Similarity=0.635  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   87 (146)
                      .|||++|+++|+++++.|+.+.+.+    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni   79 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPDE----SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV   79 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEECC----CcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceE
Confidence            4899999999999999999999987    899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           88 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        88 ~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      +++|.+|++++.+  .|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        80 ~~~G~icl~~l~~--~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f  135 (149)
T d1j7db_          80 DKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQA  135 (149)
T ss_dssp             CTTCBBCCGGGTT--SCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHH
T ss_pred             CCCCcEehHHhcC--CCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHH
Confidence            9999999999988  8999999999999999999999999999999999999999988

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=3.2e-46  Score=260.94  Aligned_cols=134  Identities=30%  Similarity=0.589  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      +.|||++|+++|++++++|+++.+..+   +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~---~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   78 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSE---SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCS---SCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCC---CchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCc
Confidence            689999999999999999999987543   79999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |+. +|.+|++++.+  +|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 I~~~~~~~~~~~~~~--~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f  136 (149)
T d1fzya_          79 ISSVTGAICLDILKN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESF  136 (149)
T ss_dssp             BCTTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHH
T ss_pred             ccCCcceeechhhcc--cCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHH
Confidence            996 88999998887  8999999999999999999999999999999999999999988

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=3.6e-46  Score=263.73  Aligned_cols=135  Identities=34%  Similarity=0.614  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   87 (146)
                      ..||+||+++|++++++|+++.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~---~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI   78 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDD---NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI   78 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTB
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCC---CCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCccc
Confidence            57999999999999999999998653   689999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEecCCCCC-----------CCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           88 YPSGTVCLSILNED-----------NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        88 ~~~G~icl~~l~~~-----------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      +.+|.+|+++|...           +.|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        79 ~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f  147 (161)
T d1pzva_          79 DKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEF  147 (161)
T ss_dssp             CTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHH
T ss_pred             CCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHH
Confidence            99999999999651           25999999999999999999999999999999999999999988

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=4.9e-46  Score=260.28  Aligned_cols=134  Identities=28%  Similarity=0.548  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      |.+||++|+++|++++++|+.+.+.++   +|++.|++.+ ||++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~---~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   76 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDD---ANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN   76 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECS---SCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCC---CceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcce
Confidence            478999999999999999999988763   6899999866 899999999999999999999999999999999999999


Q ss_pred             cCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |+++|.||+++|..+ +|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        77 I~~~G~icl~~l~~~-~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f  134 (150)
T d1wzva1          77 VDENGQICLPIISSE-NWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELF  134 (150)
T ss_dssp             BCTTCBCCCGGGCTT-TCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHH
T ss_pred             ECCCCCccccccccc-CCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHH
Confidence            999999999999753 8999999999999999999999999999999999999999988

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=4.1e-46  Score=259.08  Aligned_cols=134  Identities=28%  Similarity=0.584  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   87 (146)
                      .|||++||++|.++++.|+.+.+.++   +|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         1 ~rRl~kEl~~l~~~~~~~~~~~~~~~---~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   76 (144)
T d1c4zd_           1 SRRLMKELEEIRKCGMKNFRNIQVDE---ANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI   76 (144)
T ss_dssp             CTTHHHHHTTCSSSCCSSCEEECSSC---SSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEECCC---CcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCC
Confidence            38999999999999999998777653   7999999998 9999999999999999999999999999999999999999


Q ss_pred             CCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhhC
Q 032159           88 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWFI  146 (146)
Q Consensus        88 ~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~  146 (146)
                      +.+|.||+++|... .|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.
T Consensus        77 ~~~G~icl~~l~~~-~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~  134 (144)
T d1c4zd_          77 DEKGQVCLPVISAE-NWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFC  134 (144)
T ss_dssp             CTTCBBCCTTTSSS-SCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTH
T ss_pred             ccCCccccccccCC-CCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence            99999999999863 79999999999999999999999999999999999999999883

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=5.2e-45  Score=257.52  Aligned_cols=133  Identities=35%  Similarity=0.695  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHH-------------cCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCC
Q 032159            7 ARGRLTEERKAWRK-------------NHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKP   73 (146)
Q Consensus         7 ~~~Rl~~El~~l~~-------------~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~p   73 (146)
                      ..+||+||+++|++             +...|+++.+.+    +|+++|+++|.||+||||+||.|+|+|.||++||++|
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~p   77 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVG----GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP   77 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecC----CccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCC
Confidence            57899999999976             455689999887    8999999999999999999999999999999999999


Q ss_pred             CeeeeccCccccccC-CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           74 PKCKFPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        74 P~v~f~t~i~HpnV~-~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |+|+|.|++|||||+ .+|.||++++..  .|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        78 P~V~F~t~i~HPni~~~~G~icl~~l~~--~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y  148 (161)
T d2f4za1          78 PKMKFVTKIWHPNISSQTGAICLDILKH--EWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLF  148 (161)
T ss_dssp             CEEEESSCCCBTTBCTTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHH
T ss_pred             cEEEecCCCCCCceECCCCCeecCcccc--cCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHH
Confidence            999999999999996 589999999988  8999999999999999999999999999999999999999988

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=9.6e-45  Score=255.26  Aligned_cols=133  Identities=27%  Similarity=0.532  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      +.|.+||++|+++|++  ++++.+.....   +|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~~a~~Rl~kEl~~l~~--~~~~~i~~~~~---~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~H   75 (157)
T d1y8xa1           2 SAAQLRIQKDINELNL--PKTCDISFSDP---DDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   75 (157)
T ss_dssp             CHHHHHHHHHHHTCCC--CTTEEEECSST---TCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CHHHHHHHHHHHHhCC--CCCCcEEEcCC---CcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCC
Confidence            7899999999999864  44666654433   7999999999 8999999999999999999999999999999999999


Q ss_pred             cccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        85 pnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      |||+.+|.||++++.+  +|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|
T Consensus        76 Pnv~~~G~ic~~~~~~--~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f  134 (157)
T d1y8xa1          76 PNIDLEGNVCLNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF  134 (157)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHH
T ss_pred             ccccccceeeeeeccc--CCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHH
Confidence            9999999999999987  8999999999999999999999999999999999999999988

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-42  Score=231.80  Aligned_cols=115  Identities=33%  Similarity=0.646  Sum_probs=105.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus         1 ms~~~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      ||  + +.|||++|++++++++++|+++.+...+  +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|
T Consensus         1 m~--~-~~kRL~kEl~~l~~~~~~~~~~~~~~~~--~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t   75 (117)
T d2a7la1           1 MA--S-MQKRLQKELLALQNDPPPGMTLNEKSVQ--NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTG   75 (117)
T ss_dssp             GT--T-SCHHHHHHHHHHHHSCCTTCCCCTTCCC--CSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEES
T ss_pred             CC--c-HHHHHHHHHHHHhhCCCCCeEEEEecCC--CCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeC
Confidence            66  4 5699999999999999999987654322  68999999999999999999999999999999999999999999


Q ss_pred             Cc--cccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhc
Q 032159           81 GF--FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (146)
Q Consensus        81 ~i--~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~  122 (146)
                      ++  |||||+.+|+||+++|.+  +|+|++|+++||.+|+++|.
T Consensus        76 ~~~~~Hpnv~~~G~iCl~~l~~--~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          76 ENIPVHPHVYSNGHICLSILTE--DWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             SCCCCBTTBCTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHTC
T ss_pred             CCccccccCcCCCeEEeecCcC--CCCCcCcHHHHHHHHHHHhC
Confidence            76  999999999999999987  89999999999999999874

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=2.6e-42  Score=242.85  Aligned_cols=128  Identities=28%  Similarity=0.490  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   87 (146)
                      .|||++|+++|.+++..   +.+ .    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~-~----d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI   73 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYP-S----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV   73 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEE-C----SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHhcCCCc---CCC-C----CCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCC
Confidence            58999999999877643   444 2    699999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCcEEecCCCCCCCCCccCcHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHHHhHhhh
Q 032159           88 YP-SGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQVLYWF  145 (146)
Q Consensus        88 ~~-~G~icl~~l~~~~~W~p~~~l~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f  145 (146)
                      +. +|.||+++|.+  +|+|.+++.++|.. |+.+|.+|++++|+|.+||++|++|+++|
T Consensus        74 ~~~~G~vcl~il~~--~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f  131 (158)
T d1yf9a1          74 DERSGSVCLDVINQ--TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGF  131 (158)
T ss_dssp             CTTTCBBCHHHHHH--HCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHH
T ss_pred             ccCccccccccccc--ccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHH
Confidence            86 89999999987  89999999999975 77889999999999999999999999988

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=226.11  Aligned_cols=113  Identities=39%  Similarity=0.691  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccC
Q 032159            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (146)
Q Consensus         9 ~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   88 (146)
                      -||+||++++++++++|+.+.+.++   +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~---~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~   78 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDD---NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD   78 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCC---CCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccC
Confidence            5899999999999999999987653   6899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEecCCCC-----------CCCCCccCcHHHHHHHHHHhhcCC
Q 032159           89 PSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQP  124 (146)
Q Consensus        89 ~~G~icl~~l~~-----------~~~W~p~~~l~~vl~~i~~ll~~p  124 (146)
                      .+|.||+++|..           .++|+|++|+.+||.+|+++|.+|
T Consensus        79 ~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          79 KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            999999999964           237999999999999999999887

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=1.6e-40  Score=220.57  Aligned_cols=107  Identities=28%  Similarity=0.573  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-cccccC
Q 032159           10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVY   88 (146)
Q Consensus        10 Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~   88 (146)
                      ||+||+++++++++.|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~   77 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHP----NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY   77 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcC----CcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceEC
Confidence            89999999999999999999877    8999999999999999999999999999999999999999999986 899999


Q ss_pred             CCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhc
Q 032159           89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (146)
Q Consensus        89 ~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~  122 (146)
                      ++|+||+++|.+  +|+|++|+.+||.+|+++|.
T Consensus        78 ~~G~iCl~il~~--~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          78 SNGDICLSLLGD--DYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             TTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHC
T ss_pred             CCCeEEeecccC--CCCccCCHHHHHHHHHHHhC
Confidence            999999999987  89999999999999999874

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=229.85  Aligned_cols=130  Identities=23%  Similarity=0.322  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 032159            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (146)
Q Consensus         5 ~~~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (146)
                      ..+.+||+|||+++++++++++.+.+...++.+|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            46899999999999999999988888776666799999999999999999999999999999999999999999999999


Q ss_pred             cccCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCC-CCCCCCCHHH
Q 032159           85 PNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP-NPADPAQTDG  134 (146)
Q Consensus        85 pnV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p-~~~~p~n~~a  134 (146)
                      |||+. +|.+|...+...++|+|++||.+||.+|+++|.+| |.++|.|+|.
T Consensus        84 pnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred             ccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            99985 68887776642126999999999999999999886 8889999884

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=2e-41  Score=232.69  Aligned_cols=132  Identities=20%  Similarity=0.321  Sum_probs=113.7

Q ss_pred             chHHHHHHHHHHHHHHHcCC-CCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 032159            4 GGIARGRLTEERKAWRKNHP-HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (146)
Q Consensus         4 ~~~~~~Rl~~El~~l~~~~~-~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (146)
                      +..+.+||+|||++++++.+ .++++.... ++..|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++
T Consensus         2 ~~p~~~RL~kEl~~~~k~~~~~~~~~~~~~-~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i   80 (136)
T d1jatb_           2 KVPRNFRLLEELEKGEKGFGPESCSYGLAD-SDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKI   80 (136)
T ss_dssp             CCCHHHHHHHHHHHHHC----CCEEEEESS-TTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             CCchHHHHHHHHHHHhccCCCCcEEEeecC-CCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccc
Confidence            46789999999999999754 456555544 3335799999999999999999999999999999999999999999999


Q ss_pred             cccccCC-CCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHHH
Q 032159           83 FHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQL  137 (146)
Q Consensus        83 ~HpnV~~-~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~  137 (146)
                      +||||+. +|.+|++++... +|+|++||.+||.+|+++|.+|+...++++++++.
T Consensus        81 ~HpnV~~~~G~icl~~l~~~-~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g~~  135 (136)
T d1jatb_          81 NLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGET  135 (136)
T ss_dssp             CCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCB
T ss_pred             cccccccCCCeEECCCCccc-CcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCCCc
Confidence            9999995 799999988632 79999999999999999999999888888777654

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=9.7e-39  Score=224.50  Aligned_cols=133  Identities=23%  Similarity=0.380  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 032159            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (146)
Q Consensus         7 ~~~Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (146)
                      |.|||++||++|++++++|+++.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|+|
T Consensus         2 A~kRl~kE~~~l~~~p~~g~~~~p~~----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~   77 (157)
T d2f4wa1           2 ATQRLKQDYLRIKKDPVPYICAEPLP----SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFK   77 (157)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcC----cccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccC
Confidence            79999999999999999999999988    89999999999999999999999999999999999999999999988888


Q ss_pred             cCCCCcEEe-cCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCC--CCCHH-HHHHHHHhHhhh
Q 032159           87 VYPSGTVCL-SILNEDNGWRPAITVKQILVGIQDLLDQPNPAD--PAQTD-GYQLFIQVLYWF  145 (146)
Q Consensus        87 V~~~G~icl-~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~--p~n~~-aa~~~~~~~~~f  145 (146)
                      ++..|.+|+ ++..+  +|+|++||.+||.+|+++|.+|+++.  +.+.+ +.++|..+...|
T Consensus        78 ~~g~~~~~~l~~~~~--~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f  138 (157)
T d2f4wa1          78 CNTRLCLSITDFHPD--TWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAF  138 (157)
T ss_dssp             TTSCBC------------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCeeeeeccccCC--CCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHH
Confidence            764433332 33334  89999999999999999999988763  34444 445677776655

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=228.26  Aligned_cols=137  Identities=18%  Similarity=0.379  Sum_probs=116.4

Q ss_pred             cchHHHHHHHHHHHHHHHcCC--CC-eEEeecCCCCCCCccEEEEEEcC-CCCCCCCCCE-----------EEEEEEeCC
Q 032159            3 GGGIARGRLTEERKAWRKNHP--HG-FVAKPETKDGSVNLMIWECIIPG-KTGTDWEGGY-----------FPLTLYFSE   67 (146)
Q Consensus         3 ~~~~~~~Rl~~El~~l~~~~~--~~-~~~~~~~~~~~~~~~~w~~~i~g-p~~tpy~gg~-----------f~~~i~fp~   67 (146)
                      ||..|.+||+|||++|++++.  .+ +.+.+.+    +|+++|++.|.| |++|||+||.           |+++|.||+
T Consensus         1 gs~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~----dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~   76 (162)
T d1zuoa1           1 GSVQASDRLMKELRDIYRSQSYKTGIYSVELIN----DSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD   76 (162)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEET----TEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCeEEeecCC----CcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCC
Confidence            678999999999999987654  23 4566655    799999999999 8999999876           999999999


Q ss_pred             CCCCCCCeeeeccCcccccc-CCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHhHhh
Q 032159           68 DYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP--ADPAQTDGYQLFIQVLYW  144 (146)
Q Consensus        68 ~YP~~pP~v~f~t~i~HpnV-~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~--~~p~n~~aa~~~~~~~~~  144 (146)
                      +||++||+|+|+|+++|||+ +.+|.||+++|..+ +|+|++||.+||.+|+++|.+|++  +.+.|.+++++. ++++.
T Consensus        77 ~YP~~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~-~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~~-~~~~~  154 (162)
T d1zuoa1          77 NFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-GWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA-RAQQS  154 (162)
T ss_dssp             TTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTT-TCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCHH-HHHHH
T ss_pred             chhhhcceEEEEEEeeccccccCCceeecccccCC-CCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHHH-HhHHH
Confidence            99999999999999999985 67999999999763 799999999999999999977664  567777766654 44444


Q ss_pred             h
Q 032159          145 F  145 (146)
Q Consensus       145 f  145 (146)
                      |
T Consensus       155 y  155 (162)
T d1zuoa1         155 Y  155 (162)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.1e-23  Score=140.05  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHcCC---CCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCEEEE--EEEeCCCCCCCCCeeeeccC---
Q 032159           10 RLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL--TLYFSEDYPSKPPKCKFPQG---   81 (146)
Q Consensus        10 Rl~~El~~l~~~~~---~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~---   81 (146)
                      +..+|+.++.+.-+   ++..+....    ++..+|.+.+.|+.+++|+||+|.+  .|.||.+||++||.|.|.+.   
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~----dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~   93 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFN----DGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSM   93 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECT----TSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeC----CCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCc
Confidence            45667777766543   455555555    7889999999999999999999998  66689999999999988753   


Q ss_pred             --ccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 032159           82 --FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ  123 (146)
Q Consensus        82 --i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~  123 (146)
                        ++||||+.+|+||+++|..  .|.+..++.+++..|+++|.+
T Consensus        94 ~~~~h~~V~~~G~V~lp~L~~--W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          94 TIKTGKHVDANGKIYLPYLHE--WKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             EECCSSSBCTTCBBCCHHHHT--CCTTTCCHHHHHHHHHHHHHH
T ss_pred             cccCCCeECCCCCCcchhhcC--CCcccccHHHHHHHHHHHhCC
Confidence              6899999999999999976  556677999999999999965

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=3e-20  Score=128.79  Aligned_cols=114  Identities=18%  Similarity=0.178  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHcCC---CCeEEeecCCCCCCCccEEEEEEcCCCCCCCCCCE---EEEEEEeCCCCCCCCCeeeeccC
Q 032159            8 RGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY---FPLTLYFSEDYPSKPPKCKFPQG   81 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~---~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~   81 (146)
                      .+|+.+|...+.++-+   +...+...+    +....+.+.+.|.-..+|+|+.   +.+.|.||++||++||.|.|.++
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~----dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~   96 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHS----DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLE   96 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECT----TSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCT
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecC----CCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecC
Confidence            4688889988877643   233333333    5566778888998889999996   78889999999999999999764


Q ss_pred             -----------ccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCC
Q 032159           82 -----------FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPA  127 (146)
Q Consensus        82 -----------i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~  127 (146)
                                 ++||||+.+|+||++.|..  .|.+..+|.+++..|+.+|.+|..+
T Consensus        97 ~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~--W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_          97 NFDMNTISSSLPIQEYIDSNGWIALPILHC--WDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             TCCSCC----CGGGGGBCTTSCBCCHHHHS--CCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cccccCCCcccccCCCCCCCCcEehHHhcC--CCCccCcHHHHHHHHHHHhcCCCCC
Confidence                       5799999999999999987  6778899999999999999887543

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.6e-05  Score=52.22  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHH-------cCCCCeEEeecCCCCCCCccEEEEEEcC-CCCCCCCCCEEEEEEEeCCCCCCCCCeeee
Q 032159            7 ARGRLTEERKAWRK-------NHPHGFVAKPETKDGSVNLMIWECIIPG-KTGTDWEGGYFPLTLYFSEDYPSKPPKCKF   78 (146)
Q Consensus         7 ~~~Rl~~El~~l~~-------~~~~~~~~~~~~~~~~~~~~~w~~~i~g-p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   78 (146)
                      -..||..||..|.+       +..+.+.+.. +    .+-..|.+.--- -..-   .-.|.+++.+|..||..||.|..
T Consensus        26 W~~RLKEEy~aLI~Yv~nNK~~dndWF~les-n----~~GT~W~GkCWyihnl~---kYeFd~eFdIP~tYP~t~pEi~l   97 (162)
T d2in1a1          26 WVQRLKEEYQSLIRYVENNKNADNDWFRLES-N----KEGTRWFGKCWYIHDLL---KYEFDIEFDIPITYPTTAPEIAV   97 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-C----TTSSEEEEEEEEEETTE---EEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCeEEecc-C----CCCCeeeceeeEEEeee---EEEEEEEeccCCCCCCCCcceec
Confidence            57899999998854       1223333332 1    233344332110 0000   12466777789999999999976


Q ss_pred             ccC-ccccccCCCCcEEecCCCCCCCC---CccCcHHHHH
Q 032159           79 PQG-FFHPNVYPSGTVCLSILNEDNGW---RPAITVKQIL  114 (146)
Q Consensus        79 ~t~-i~HpnV~~~G~icl~~l~~~~~W---~p~~~l~~vl  114 (146)
                      ..- --..-.|..|+||++.-... =|   .|.++|...|
T Consensus        98 PeLdGKTaKMYRGGkIClt~HFkP-LWarN~PkfGIaHal  136 (162)
T d2in1a1          98 PELDGKTAKMYRGGKICLTDHFKP-LWARNVPKFGLAHLM  136 (162)
T ss_dssp             GGGSSSCSSSCGGGBCCCCTTSHH-HHHTTTTSCCHHHHH
T ss_pred             cccCCchhhhhcCceeeccccchh-hhhhcCCchhHHHHH
Confidence            531 12234466799999876541 24   4556666554

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0066  Score=37.94  Aligned_cols=66  Identities=15%  Similarity=0.104  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHcCCCCeEEeecCCCCCCCccE--EEEEEcCCC--CCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 032159           11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMI--WECIIPGKT--GTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (146)
Q Consensus        11 l~~El~~l~~~~~~~~~~~~~~~~~~~~~~~--w~~~i~gp~--~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (146)
                      +..|+..|..--+..+.+....    ++...  ..+.+....  +..-......+.+.+|++||..+|.+.+.+
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~   75 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGN----GRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   75 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCT----TSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccC----CCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeec
Confidence            5788888877655666544322    33333  344444211  111223568899999999999999998754

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.042  Score=34.96  Aligned_cols=70  Identities=11%  Similarity=0.133  Sum_probs=45.7

Q ss_pred             CCCEEEEEEEeCCCCCCCCCeeeeccCccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHH
Q 032159           55 EGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDG  134 (146)
Q Consensus        55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~a  134 (146)
                      ......+.+.+|.+||..+|.|...+                      .|........++..+...+.+-....+.=-++
T Consensus        64 ~~~~l~L~~~lP~~YP~~~P~i~l~~----------------------~~l~~~~~~~l~~~l~~~~~~~~~Ge~~if~l  121 (140)
T d2daxa1          64 KMAMFSLACILPFKYPAVLPEITVRS----------------------VLLSRSQQTQLNTDLTAFLQKHCHGDVCILNA  121 (140)
T ss_dssp             CEEEEEEEEEECSSTTSSCCCCEEEC----------------------TTSCHHHHHHHHHHHHHHHHHSSCSSCCSHHH
T ss_pred             cCceEEEEEEecCcCCCcCCceeccC----------------------CCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence            34568899999999999999987632                      23333445556666666664433455666677


Q ss_pred             HHHHHHhHhhhC
Q 032159          135 YQLFIQVLYWFI  146 (146)
Q Consensus       135 a~~~~~~~~~f~  146 (146)
                      +...+++-..|+
T Consensus       122 ve~lqe~~~~~~  133 (140)
T d2daxa1         122 TEWVREHASGYV  133 (140)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            777776665553

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.066  Score=34.15  Aligned_cols=67  Identities=9%  Similarity=0.008  Sum_probs=43.9

Q ss_pred             CEEEEEEEeCCCCCCCCCeeeeccCccccccCCCCcEEecCCCCCCCCCccCcHHHHHHHHHHhhcCCCCCCCCCHHHHH
Q 032159           57 GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQ  136 (146)
Q Consensus        57 g~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~icl~~l~~~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~  136 (146)
                      -.+.+.+.+|++||..+|.|...+                      .|-+......+...|......-....|.=-++..
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~----------------------~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~  125 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS----------------------SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQ  125 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC----------------------SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHH
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec----------------------cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            457888999999999999986632                      2444445666667777776543344555556666


Q ss_pred             HHHHhHhhh
Q 032159          137 LFIQVLYWF  145 (146)
Q Consensus       137 ~~~~~~~~f  145 (146)
                      ..+++-..|
T Consensus       126 ~lqe~~~~~  134 (141)
T d2dawa1         126 WLQDNSASY  134 (141)
T ss_dssp             HHHHTTHHH
T ss_pred             HHHHHHHHH
Confidence            666554443

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.37  Score=30.32  Aligned_cols=74  Identities=11%  Similarity=0.012  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCC-CCCCccEEEEEEcCCC-CCCCCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 032159            8 RGRLTEERKAWRKNHPHGFVAKPETKD-GSVNLMIWECIIPGKT-GTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG   81 (146)
Q Consensus         8 ~~Rl~~El~~l~~~~~~~~~~~~~~~~-~~~~~~~w~~~i~gp~-~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   81 (146)
                      ..+-..|+..|..--+..+........ .........+.+.... +.......+.+.|.||.+||..+|.+.+...
T Consensus        12 ~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~   87 (137)
T d1ukxa_          12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecC
Confidence            445577888886544444443221110 0011122344554222 2223446788999999999999999987643