Citrus Sinensis ID: 032163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MFNRGGNYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mfnrggnyiRDAIQQVSQHFIILTSwfhglriskcffsfqaddelkkqrrpfllqffspiFLKAFSITffgewgdksqlatiglaadenpfgVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQsflspvks
Flexible Loop (DISEMBL)
MFNRGGNYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIqsflspvks
Low Complexity Region (SEG)
MFNRGGNYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Disordered region (IsUnstruct)
******NYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL*****
Disordered Region (DISOPRED)
*FNR*GNYIRDAIQQVSQHFIILTSWFHGLRISKCFF*****************QFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK*
Disordered Region (DISEMBL)
MFNRGGNYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Disordered Region (DISPRO)
***RGGNYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNRGGNYIRDAIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q9SX28	228	GDT1-like protein 5 OS=Ar	yes	no	0.719	0.460	0.828	4e-45
Q9C6M1	230	GDT1-like protein 4 OS=Ar	no	no	0.746	0.473	0.807	2e-44
B9G125	232	GDT1-like protein 5 OS=Or	yes	no	0.705	0.443	0.815	4e-44
Q2R4J1	279	GDT1-like protein 3 OS=Or	no	no	0.671	0.351	0.510	6e-22
A2ZE50	279	GDT1-like protein 3 OS=Or	N/A	no	0.671	0.351	0.510	6e-22
P52875	323	Transmembrane protein 165	yes	no	0.616	0.278	0.516	1e-21
Q4V899	323	Transmembrane protein 165	yes	no	0.616	0.278	0.516	1e-21
Q9HC07	324	Transmembrane protein 165	yes	no	0.616	0.277	0.516	1e-21
Q93Y38	293	GDT1-like protein 3 OS=Ar	no	no	0.671	0.334	0.479	4e-21
Q10320	287	GDT1-like protein C17G8.0	yes	no	0.630	0.320	0.474	5e-21

>sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=2 SV=1

 Score =  179 bits (455), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 96/105 (91%)

Query: 42  DDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQ 101
           +DE KKQ+RPFL  FFSPIFLKAFSI FFGEWGDKSQLATIGLAADENP GVVLGGI+ Q
Sbjct: 124 EDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIVAQ 183

Query: 102 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 146
            LCTTAAV+GGKSLASQISE+IVALSGG+LFI+FGIQS L+PV +
Sbjct: 184 TLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVDA 228

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 99/109 (90%)

Query: 38  SFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 97
           S + +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 122 SSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGG 181

Query: 98  IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 146
           ++ Q LCTTAAVIGGKSLASQISE+IVALSGG+LFI+FGIQS+L+ V++
Sbjct: 182 VVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVEA 230

Arabidopsis thaliana (taxid: 3702)

>sp|B9G125|GDT15_ORYSJ GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 98/103 (95%)

Query: 40  QADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 99
           +A+D+ KKQ+RPF+LQFFSPIF+KAFSITFFGEWGDKSQ+ATIGLAADENPFGVVLGG++
Sbjct: 124 KANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGVL 183

Query: 100 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 142
            QALCTTAAV+GGKSLASQISEK+V LS GVLF++FGI S+LS
Sbjct: 184 AQALCTTAAVMGGKSLASQISEKMVGLSSGVLFLLFGIMSYLS 226

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 67/98 (68%)

Query: 46  KKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCT 105
           K   R F  +F +PIFL+AF +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +CT
Sbjct: 180 KSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCT 239

Query: 106 TAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143
           + AVIGG  LAS+IS++ VA  GGVLF+ F + S+  P
Sbjct: 240 SLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 67/98 (68%)

Query: 46  KKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCT 105
           K   R F  +F +PIFL+AF +TF  EWGD+SQ+ATI LA  +N  GV +G  +G  +CT
Sbjct: 180 KSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCT 239

Query: 106 TAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143
           + AVIGG  LAS+IS++ VA  GGVLF+ F + S+  P
Sbjct: 240 SLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277

Oryza sativa subsp. indica (taxid: 39946)

>sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 54  LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
           L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct: 229 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 288

Query: 114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
            +A +IS + V + GG++F+ F   + F+SP
Sbjct: 289 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 319

Mus musculus (taxid: 10090)

>sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 54  LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
           L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct: 229 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 288

Query: 114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
            +A +IS + V + GG++F+ F   + F+SP
Sbjct: 289 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 319

Rattus norvegicus (taxid: 10116)

>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 54  LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
           L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct: 230 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 289

Query: 114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
            +A +IS + V + GG++F+ F   + F+SP
Sbjct: 290 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 320

Homo sapiens (taxid: 9606)

>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 66/98 (67%)

Query: 46  KKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCT 105
           K   R    +F +PIFL++F +TF  EWGD+SQ+ATI LA  +N  GV +G  IG  +CT
Sbjct: 194 KTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGASIGHTVCT 253

Query: 106 TAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 143
           + AV+GG  LAS+IS++ VA  GG+LF+ F + S+  P
Sbjct: 254 SLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYP 291

Arabidopsis thaliana (taxid: 3702)

>sp|Q10320|YD68_SCHPO GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 66/97 (68%)

Query: 44  ELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQAL 103
           +LK + R  +   FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A 
Sbjct: 186 QLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHAC 245

Query: 104 CTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 140
           CT  AVI GK ++++I    V   GG+LFI FG+  F
Sbjct: 246 CTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYF 282

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
255576513	228	Transmembrane protein TPARL, putative [R	0.726	0.464	0.915	3e-48
225423915	230	PREDICTED: GDT1-like protein 4 [Vitis vi	0.732	0.465	0.906	3e-47
351725019	229	uncharacterized protein LOC100527455 [Gl	0.746	0.475	0.862	7e-46
356575520	229	PREDICTED: uncharacterized protein LOC10	0.746	0.475	0.862	7e-46
388491688	229	unknown [Lotus japonicus]	0.746	0.475	0.862	7e-46
224108528	228	predicted membrane protein [Populus tric	0.726	0.464	0.877	2e-45
224127069	228	predicted membrane protein [Populus tric	0.705	0.451	0.912	2e-45
388501694	227	unknown [Medicago truncatula]	0.732	0.471	0.859	2e-45
224101691	224	predicted membrane protein [Populus tric	0.705	0.459	0.912	2e-45
388493328	195	unknown [Medicago truncatula]	0.732	0.548	0.859	4e-45

>gi|255576513|ref|XP_002529148.1| Transmembrane protein TPARL, putative [Ricinus communis] gi|223531427|gb|EEF33261.1| Transmembrane protein TPARL, putative [Ricinus communis]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/106 (91%), Positives = 103/106 (97%)

Query: 40  QADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 99
           +ADDELKKQRRPFL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVVLGGI+
Sbjct: 123 KADDELKKQRRPFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGIV 182

Query: 100 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 145
           GQALCTTAAV+GGKSLASQISEKIVALSGGVLFI+FGIQSFLS V+
Sbjct: 183 GQALCTTAAVVGGKSLASQISEKIVALSGGVLFIIFGIQSFLSTVE 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423915|ref|XP_002281939.1| PREDICTED: GDT1-like protein 4 [Vitis vinifera] gi|297737851|emb|CBI27052.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/107 (90%), Positives = 101/107 (94%)

Query: 40  QADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 99
           + DDELKKQRRP L+QFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP GVVLGGII
Sbjct: 124 KDDDELKKQRRPILMQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPIGVVLGGII 183

Query: 100 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 146
           GQALCTTAAV+GGKSLASQISEK VALSGGVLFIVFGIQS LS V+S
Sbjct: 184 GQALCTTAAVLGGKSLASQISEKFVALSGGVLFIVFGIQSLLSTVES 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725019|ref|NP_001236310.1| uncharacterized protein LOC100527455 [Glycine max] gi|255632394|gb|ACU16547.1| unknown [Glycine max]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/109 (86%), Positives = 102/109 (93%)

Query: 38  SFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 97
           S + DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 98  IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 146
           I+GQALCT+AAV+GGKSLASQISEKIVALSGG+LFIVFGIQSFLSPV+S
Sbjct: 181 ILGQALCTSAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575520|ref|XP_003555888.1| PREDICTED: uncharacterized protein LOC100527757 [Glycine max]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/109 (86%), Positives = 101/109 (92%)

Query: 38  SFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 97
           S + DD  KK +R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 98  IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 146
           I+GQALCT AAV+GGKSLASQISEKIVALSGG+LFIVFGIQSFLSPV+S
Sbjct: 181 ILGQALCTAAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491688|gb|AFK33910.1| unknown [Lotus japonicus]

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/109 (86%), Positives = 101/109 (92%)

Query: 38  SFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 97
           S +ADD+ KK  R FL QFFSPIFL+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SNKADDDKKKNNRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 98  IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 146
           I+ Q LCTTAAV+GGKSLASQISEK+VALSGGVLFIVFGIQSFLSPV+S
Sbjct: 181 ILAQTLCTTAAVMGGKSLASQISEKVVALSGGVLFIVFGIQSFLSPVES 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108528|ref|XP_002314881.1| predicted membrane protein [Populus trichocarpa] gi|222863921|gb|EEF01052.1| predicted membrane protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/106 (87%), Positives = 99/106 (93%)

Query: 40  QADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGII 99
           + DDELKK+RRPFL Q FSPI LKAFSITFFGEWGDKSQ+ATIGLAADENP GVVLGGI+
Sbjct: 123 KDDDELKKRRRPFLSQLFSPILLKAFSITFFGEWGDKSQIATIGLAADENPLGVVLGGIV 182

Query: 100 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 145
           GQALCTTAAV GGKSLASQISEKIVALSGGVLFI+FGIQSFLS V+
Sbjct: 183 GQALCTTAAVFGGKSLASQISEKIVALSGGVLFIIFGIQSFLSTVE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127069|ref|XP_002329381.1| predicted membrane protein [Populus trichocarpa] gi|222870431|gb|EEF07562.1| predicted membrane protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 98/103 (95%)

Query: 43  DELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQA 102
           DELKKQRR FL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVV+GGI+GQA
Sbjct: 126 DELKKQRRTFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGIVGQA 185

Query: 103 LCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 145
           LCTTAAVIGGKSLASQISEKI ALSGGVLFIVFGIQSFLS V+
Sbjct: 186 LCTTAAVIGGKSLASQISEKIAALSGGVLFIVFGIQSFLSTVE 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501694|gb|AFK38913.1| unknown [Medicago truncatula]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/107 (85%), Positives = 99/107 (92%)

Query: 38  SFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 97
           S + DD  KK +RPFL QFFSPI L+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 121 SKKVDDATKKHKRPFLSQFFSPILLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 180

Query: 98  IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144
           I+GQALCTTAAVIGGKSLASQISEK++ LSGG+LFIVFGIQSFLSPV
Sbjct: 181 ILGQALCTTAAVIGGKSLASQISEKVIGLSGGILFIVFGIQSFLSPV 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101691|ref|XP_002312384.1| predicted membrane protein [Populus trichocarpa] gi|222852204|gb|EEE89751.1| predicted membrane protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 98/103 (95%)

Query: 43  DELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQA 102
           DE KKQRR FL QFFSPI LKAFSITFFGEWGDKSQ+ATIGLAADENPFGVV+GGI+GQA
Sbjct: 122 DEFKKQRRTFLSQFFSPILLKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGIVGQA 181

Query: 103 LCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 145
           LCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS V+
Sbjct: 182 LCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSTVE 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493328|gb|AFK34730.1| unknown [Medicago truncatula]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/107 (85%), Positives = 99/107 (92%)

Query: 38  SFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 97
           S + DD  KK +RPFL QFFSPI L+AFSITFFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct: 89  SKKVDDATKKHKRPFLSQFFSPILLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 148

Query: 98  IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144
           I+GQALCTTAAVIGGKSLASQISEK++ LSGG+LFIVFGIQSFLSPV
Sbjct: 149 ILGQALCTTAAVIGGKSLASQISEKVIGLSGGILFIVFGIQSFLSPV 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2026879	228	AT1G68650 "AT1G68650" [Arabido	0.705	0.451	0.844	1.5e-42
TAIR|locus:2031195	230	AT1G25520 [Arabidopsis thalian	0.746	0.473	0.807	1.9e-42
UNIPROTKB|F1P1B3	254	TMEM165 "Uncharacterized prote	0.616	0.354	0.527	1.3e-22
UNIPROTKB|E1B731	324	TMEM165 "Uncharacterized prote	0.616	0.277	0.516	5.5e-22
UNIPROTKB|F1PU63	325	TMEM165 "Uncharacterized prote	0.616	0.276	0.516	5.5e-22
UNIPROTKB|B4DHW1	261	TMEM165 "cDNA FLJ60544, highly	0.616	0.344	0.516	5.5e-22
UNIPROTKB|Q9HC07	324	TMEM165 "Transmembrane protein	0.616	0.277	0.516	5.5e-22
MGI|MGI:894407	323	Tmem165 "transmembrane protein	0.616	0.278	0.516	5.5e-22
RGD|1306983	323	Tmem165 "transmembrane protein	0.616	0.278	0.516	5.5e-22
UNIPROTKB|I3LA04	151	TMEM165 "Uncharacterized prote	0.616	0.596	0.516	7e-22

TAIR|locus:2026879 AT1G68650 "AT1G68650" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 87/103 (84%), Positives = 95/103 (92%)

Query:    42 DDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQ 101
             +DE KKQ+RPFL  FFSPIFLKAFSI FFGEWGDKSQLATIGLAADENP GVVLGGI+ Q
Sbjct:   124 EDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIVAQ 183

Query:   102 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 144
              LCTTAAV+GGKSLASQISE+IVALSGG+LFI+FGIQS L+PV
Sbjct:   184 TLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPV 226

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2031195 AT1G25520 [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/109 (80%), Positives = 99/109 (90%)

Query:    38 SFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGG 97
             S + +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAADENPFGVVLGG
Sbjct:   122 SSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGG 181

Query:    98 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 146
             ++ Q LCTTAAVIGGKSLASQISE+IVALSGG+LFI+FGIQS+L+ V++
Sbjct:   182 VVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVEA 230

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

UNIPROTKB|F1P1B3 TMEM165 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 48/91 (52%), Positives = 67/91 (73%)

Query:    54 LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
             L F SPIF++AF++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct:   160 LHFISPIFVQAFTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 219

Query:   114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
              +A +IS + V + GG++F+ F   + F+SP
Sbjct:   220 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 250

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E1B731 TMEM165 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query:    54 LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
             L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct:   230 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 289

Query:   114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
              +A +IS + V + GG++F+ F   + F+SP
Sbjct:   290 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 320

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1PU63 TMEM165 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query:    54 LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
             L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct:   231 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 290

Query:   114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
              +A +IS + V + GG++F+ F   + F+SP
Sbjct:   291 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 321

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|B4DHW1 TMEM165 "cDNA FLJ60544, highly similar to Transmembrane protein TPARL" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query:    54 LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
             L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct:   167 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 226

Query:   114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
              +A +IS + V + GG++F+ F   + F+SP
Sbjct:   227 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 257

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9HC07 TMEM165 "Transmembrane protein 165" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query:    54 LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
             L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct:   230 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 289

Query:   114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
              +A +IS + V + GG++F+ F   + F+SP
Sbjct:   290 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 320

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

MGI|MGI:894407 Tmem165 "transmembrane protein 165" [Mus musculus (taxid:10090)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query:    54 LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
             L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct:   229 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 288

Query:   114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
              +A +IS + V + GG++F+ F   + F+SP
Sbjct:   289 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 319

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1306983 Tmem165 "transmembrane protein 165" [Rattus norvegicus (taxid:10116)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query:    54 LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
             L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct:   229 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGR 288

Query:   114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
              +A +IS + V + GG++F+ F   + F+SP
Sbjct:   289 MIAQKISVRTVTIIGGIVFLAFAFSALFISP 319

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LA04 TMEM165 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 47/91 (51%), Positives = 66/91 (72%)

Query:    54 LQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGK 113
             L F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+
Sbjct:    57 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGAVGHCLCTGLAVIGGR 116

Query:   114 SLASQISEKIVALSGGVLFIVFGIQS-FLSP 143
              +A +IS + V + GG++F+ F   + F+SP
Sbjct:   117 MVAQKISVRTVTIIGGIVFLAFAFSALFISP 147

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX28	GDT15_ARATH	No assigned EC number	0.8285	0.7191	0.4605	yes	no
B9G125	GDT15_ORYSJ	No assigned EC number	0.8155	0.7054	0.4439	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030303001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (216 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	2e-21
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	7e-21
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	5e-06

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 84.7 bits (210), Expect = 2e-21
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 60  IFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQ 118
           +F+  F   F  E GDK+Q+ATI LAAD + P+ V  G  +G  L +  AV+ GK +A +
Sbjct: 101 VFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGK 160

Query: 119 ISEKIVALSGGVLFIVFGIQSFL 141
           + E+++     +LF++F +    
Sbjct: 161 LPERLLRFIAALLFLIFALVLLW 183

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 80.2 bits (199), Expect = 7e-21
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 61  FLKAFSITFFGEWGDKSQLATIGLAA--DENPFGVVLGGIIGQALCTTAAVIGGKSLASQ 118
           FL +F + F  E GDK+QLATI LAA    +P+ V LG  +  AL T  AV+ G+ LA+ 
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 119 ISEKIVALSGGVLFIVFG 136
           +  +++    GVLF+ FG
Sbjct: 61  LPPRVLHFVAGVLFLAFG 78

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 61  FLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS 120
            L +  +    E GDK+QL  + LA     + V  G  I        AV+ G + AS + 
Sbjct: 4   LLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLP 63

Query: 121 EKIVALSGGVLFIVFGI 137
           E+ +A + GVLF+ F +
Sbjct: 64  ERPLAWASGVLFLAFAV 80

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
KOG2881	294	consensus Predicted membrane protein [Function unk	99.97
COG2119	190	Predicted membrane protein [Function unknown]	99.95
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.94
COG2119	190	Predicted membrane protein [Function unknown]	99.85
KOG2881	294	consensus Predicted membrane protein [Function unk	99.78
PRK11469	188	hypothetical protein; Provisional	97.68
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	97.06
COG1971	190	Predicted membrane protein [Function unknown]	96.87
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	96.71
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	94.72
COG4280	236	Predicted membrane protein [Function unknown]	94.14
PRK09304	207	arginine exporter protein; Provisional	91.8
PRK11469	188	hypothetical protein; Provisional	90.81
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	89.92
COG4280	236	Predicted membrane protein [Function unknown]	88.51
COG0730	258	Predicted permeases [General function prediction o	88.36
PF02659	67	DUF204: Domain of unknown function DUF; InterPro:	88.0
TIGR00779	193	cad cadmium resistance transporter (or sequestrati	87.93
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	87.78
PRK10958	212	leucine export protein LeuE; Provisional	87.57
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	87.06
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	85.65
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	85.64
PF03741	183	TerC: Integral membrane protein TerC family; Inter	82.21
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	80.93
PF01925	240	TauE: Sulfite exporter TauE/SafE; InterPro: IPR002	80.89

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.97  E-value=1.9e-31  Score=223.04  Aligned_cols=136  Identities=49%  Similarity=0.785  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHH-HHHHHhhHHhhhhccCcCchH---------------------------------Hhhcccchhhhh
Q 032163           11 DAIQQVSQHFIIL-TSWFHGLRISKCFFSFQADDE---------------------------------LKKQRRPFLLQF   56 (146)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~~   56 (146)
                      ..|++-.+|.+.- +|.+||+|+|+++++..|++.                                 .+++.|+.++.+
T Consensus       125 ~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~f  204 (294)
T KOG2881|consen  125 NLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLF  204 (294)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHh
Confidence            4577778887666 899999999999977654311                                 012245666788


Q ss_pred             hhHHHHHHHHHHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 032163           57 FSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  136 (146)
Q Consensus        57 ~~~~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG  136 (146)
                      |+|.|+++|.++|++|||||||++|++||++.||+.|++|+.+||.+||++||+.|++++++|++|.+..++|++|++||
T Consensus       205 fspifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fg  284 (294)
T KOG2881|consen  205 FSPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFG  284 (294)
T ss_pred             ccHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCC
Q 032163          137 IQSFLSPVKS  146 (146)
Q Consensus       137 ~~~L~~~~~~  146 (146)
                      +..++++++.
T Consensus       285 l~~i~~~~~~  294 (294)
T KOG2881|consen  285 LVYIFQGFDA  294 (294)
T ss_pred             HHHHhcCCCC
Confidence            9999998763

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.95  E-value=4.3e-28  Score=194.01  Aligned_cols=122  Identities=25%  Similarity=0.386  Sum_probs=100.4

Q ss_pred             HHHHHHHHHH-HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHhcccC-Cc
Q 032163           14 QQVSQHFIIL-TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PF   91 (146)
Q Consensus        14 ~~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~LAa~~~-p~   91 (146)
                      ++...+.... +|..||.|.++++-++++|   .+..++      ..+|.++|+++|++|||||||++|++||++|+ ||
T Consensus        63 ~~~~~~~~~~~~Flafav~~l~edk~~~~e---~~~~~~------~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~  133 (190)
T COG2119          63 PERPLAWASGVLFLAFAVWMLIEDKEDDEE---AQAASP------RGVFVTTFITFFLAELGDKTQIATIALAADYHSPW  133 (190)
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccccccc---cccccc------ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCce
Confidence            3333344333 7889999988855444333   221111      25899999999999999999999999999985 69


Q ss_pred             EEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163           92 GVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  144 (146)
Q Consensus        92 ~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~  144 (146)
                      .|++|+++||++||.++|++|+++++|+|+|.++.++|++|++||+..+++..
T Consensus       134 ~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~  186 (190)
T COG2119         134 AVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF  186 (190)
T ss_pred             eeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888753

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.94  E-value=1.9e-27  Score=166.61  Aligned_cols=76  Identities=47%  Similarity=0.727  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhcccchHHHHHHHHhccc--CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 032163           61 FLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  136 (146)
Q Consensus        61 f~~aF~liFlAElGDKTQlati~LAa~~--~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG  136 (146)
                      |+++|.++|++|||||||++|++||+||  +|+.|++|+.+|++++|+++|++|+++++++|++++++++|++|++||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999999  899999999999999999999999999999999999999999999987

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.85  E-value=3e-21  Score=154.72  Aligned_cols=86  Identities=28%  Similarity=0.375  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Q 032163           60 IFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS  139 (146)
Q Consensus        60 ~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~  139 (146)
                      .+..+..++++||+|||||+.++.||+||+|++|+.|+..|++.+|.+++++|++.++.+|+++.++.++++|++||+|+
T Consensus         3 ~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~   82 (190)
T COG2119           3 ALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWM   82 (190)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCC
Q 032163          140 FLSPVK  145 (146)
Q Consensus       140 L~~~~~  145 (146)
                      ++++.+
T Consensus        83 l~edk~   88 (190)
T COG2119          83 LIEDKE   88 (190)
T ss_pred             hccccc
Confidence            998643

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.78  E-value=2.6e-19  Score=150.34  Aligned_cols=88  Identities=25%  Similarity=0.316  Sum_probs=84.9

Q ss_pred             hhhHHHHHHHHHHHhhcccchHHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 032163           56 FFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVF  135 (146)
Q Consensus        56 ~~~~~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~f  135 (146)
                      .+-+.|..++.++|++|+||||+++++.||+||+...|+.|+..|++++|.+++++|+.-++.+|.++.+++++++|++|
T Consensus        64 s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iF  143 (294)
T KOG2881|consen   64 SFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIF  143 (294)
T ss_pred             HHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Confidence            35578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 032163          136 GIQSFLSP  143 (146)
Q Consensus       136 G~~~L~~~  143 (146)
                      |+++|+++
T Consensus       144 GlkmL~eg  151 (294)
T KOG2881|consen  144 GLKMLKEG  151 (294)
T ss_pred             HHHHHHHh
Confidence            99999986

>PRK11469 hypothetical protein; Provisional

Probab=97.68  E-value=0.00067  Score=54.34  Aligned_cols=128  Identities=22%  Similarity=0.248  Sum_probs=75.9

Q ss_pred             chhhhHHHHHHHHHHHHHH-HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHH
Q 032163            5 GGNYIRDAIQQVSQHFIIL-TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIG   83 (146)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~   83 (146)
                      .|+++.+.+++.+ |.+.. .+.+-|.|.+++++..+++++++. .++.   ...+.+..+..+-.     | .--+-++
T Consensus        57 ~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~-~~~~---~~~~~l~LaiAtSi-----D-AlavGi~  125 (188)
T PRK11469         57 MGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGFRGADDEDEEP-RRRH---GFWLLVTTAIATSL-----D-AMAVGVG  125 (188)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccccccc-ccCC---CHHHHHHHHHHHHH-----H-HHHHHHH
Confidence            5889999999976 77666 778889999999987654432211 1110   11122222211100     0 0001122


Q ss_pred             Hhcc-cCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163           84 LAAD-ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  144 (146)
Q Consensus        84 LAa~-~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~  144 (146)
                      ++.- .+++...+-.-.-..+++..++.+|+.+.+++ .++...++|++.++.|+..+.+..
T Consensus       126 ~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~a~~lgG~iLI~iGi~il~~h~  186 (188)
T PRK11469        126 LAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKKAEILGGLVLIGIGVQILWTHF  186 (188)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2221 24444444444555667777777888777654 567899999999999999997654

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=97.06  E-value=0.02  Score=44.16  Aligned_cols=121  Identities=18%  Similarity=0.237  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhhccCcCchHHhhc---ccchhhhh-----hhH---HHHHHHHHHHhhcccchHHHH
Q 032163           12 AIQQVSQHFIILTSWFHGLRISKCFFSFQADDELKKQ---RRPFLLQF-----FSP---IFLKAFSITFFGEWGDKSQLA   80 (146)
Q Consensus        12 ~~~~~~~~~~~~~~~~FG~~~l~~~~~~~~~~~~~~~---~~~~~~~~-----~~~---~f~~aF~liFlAElGDKTQla   80 (146)
                      .+++.++=+-..-++++|.+.++...+.+.+++++.+   .++.+...     .+|   .++.++...|+.+-.+.+|..
T Consensus        57 ~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~  136 (191)
T PF01810_consen   57 WLFMILKLLGALYLLYLGYKLLRSKFSSKSSTQSEAKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFL  136 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHH
Confidence            3444444444457889999999977666543322221   11111111     122   355555555555533344444


Q ss_pred             HHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccH---HHHHHHHHHHHHHHHHHHhcCC
Q 032163           81 TIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISE---KIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus        81 ti~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~---~~v~~~agilFl~fG~~~L~~~  143 (146)
                      ...+.       +++|+..-+.....    .++.+.+++..   +++++++|++++.+|++.++++
T Consensus       137 ~~~~~-------~~~~~~~w~~~~~~----~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g  191 (191)
T PF01810_consen  137 VFILG-------IFLGSLLWFLLLAL----LGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG  191 (191)
T ss_pred             HHHHH-------HHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            43332       23344444444444    44444444433   3899999999999999998864

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>COG1971 Predicted membrane protein [Function unknown]

Probab=96.87  E-value=0.03  Score=45.58  Aligned_cols=117  Identities=20%  Similarity=0.255  Sum_probs=63.1

Q ss_pred             HHHHHHHHH-HHHHHhhHHhhhhccCcCchHHhhcccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHhcccCCcEE
Q 032163           15 QVSQHFIIL-TSWFHGLRISKCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGV   93 (146)
Q Consensus        15 ~~~~~~~~~-~~~~FG~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~aF~liFlAElGDKTQlati~LAa~~~p~~V   93 (146)
                      ++..|.+.. ++.+-|++.++++.+.|++|..++..+..+  .+.+....+..+-.-+      --+-+.++-- .  ..
T Consensus        66 ~~~~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~--~~~~~~~laiatSida------l~vG~~~a~l-g--v~  134 (190)
T COG1971          66 AEWAHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDL--NFKELILLAIATSIDA------LAVGVGLAFL-G--VN  134 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchh--hHHHHHHHHHHHHHHH------HHHhhhHHHh-c--ch
Confidence            444554444 888999999999999877765544322211  1222333333322211      0011111111 0  11


Q ss_pred             eehHHHH----HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163           94 VLGGIIG----QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus        94 ~~Ga~~a----l~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~  143 (146)
                      ...++..    ....+.++...|+.+.+.+ .++...++|++.+++|.+.+++.
T Consensus       135 i~~~av~iG~~T~il~~~G~~IG~~~g~~~-g~~ae~lgGiiLI~~G~~iL~~~  187 (190)
T COG1971         135 ILLAAVAIGLITLILSALGAIIGRKLGKFL-GKYAEILGGIILIGIGVKILLEH  187 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHh
Confidence            1122222    2344455555565555544 56789999999999999999864

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=96.71  E-value=0.016  Score=46.88  Aligned_cols=38  Identities=11%  Similarity=0.075  Sum_probs=29.5

Q ss_pred             chhhhHHHHHHHHHHHHHH-HHHHHhhHHhhhhccCcCc
Q 032163            5 GGNYIRDAIQQVSQHFIIL-TSWFHGLRISKCFFSFQAD   42 (146)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~~~FG~~~l~~~~~~~~~   42 (146)
                      .|+++.+.+++...|.+.. .+.+.|.+.+++.+.++++
T Consensus        50 ~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~~~   88 (206)
T TIGR02840        50 LGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPKKE   88 (206)
T ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            4788888898865566555 8888999999999876544

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=94.72  E-value=0.069  Score=43.20  Aligned_cols=53  Identities=23%  Similarity=0.251  Sum_probs=44.7

Q ss_pred             cEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163           91 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus        91 ~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~  143 (146)
                      +...+-...-..+++.++..+|+.+.+++|+++-+++++++++.+|+++++++
T Consensus        30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~   82 (206)
T TIGR02840        30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNA   82 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence            44444444556689999999999999999999999999999999999999864

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG4280 Predicted membrane protein [Function unknown]

Probab=94.14  E-value=0.11  Score=43.22  Aligned_cols=65  Identities=23%  Similarity=0.333  Sum_probs=54.8

Q ss_pred             HHHHHHHHhcc--cCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163           77 SQLATIGLAAD--ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS  142 (146)
Q Consensus        77 TQlati~LAa~--~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~  142 (146)
                      +-..+++.+-.  ++...-++|+.+|+++.-.++..+|+.+ ..+|.+++++++|++.+.||-.-.++
T Consensus        18 vEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rs   84 (236)
T COG4280          18 VEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRS   84 (236)
T ss_pred             HHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHH
Confidence            44556666664  4667789999999999999999999998 58999999999999999999765543

>PRK09304 arginine exporter protein; Provisional

Probab=91.80  E-value=4.4  Score=32.07  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC
Q 032163          121 EKIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus       121 ~~~v~~~agilFl~fG~~~L~~~  143 (146)
                      .+++++++|++++.+|++.+.++
T Consensus       180 ~~~in~~~g~~l~~~~~~l~~~~  202 (207)
T PRK09304        180 QRIINLFVGCVMWFIALQLARQG  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            36889999999999999998765

>PRK11469 hypothetical protein; Provisional

Probab=90.81  E-value=0.47  Score=37.97  Aligned_cols=42  Identities=17%  Similarity=0.055  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163          101 QALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus       101 l~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~  143 (146)
                      ..+++.++-.+|+.+.+++|+ +-|++++.+.+..|.|+++++
T Consensus        47 q~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~   88 (188)
T PRK11469         47 ETLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEG   88 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            377888899999999999777 669999999999999999975

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=89.92  E-value=7.3  Score=29.78  Aligned_cols=19  Identities=37%  Similarity=0.621  Sum_probs=15.8

Q ss_pred             cHHHHHHHHHHHHHHHHHH
Q 032163          120 SEKIVALSGGVLFIVFGIQ  138 (146)
Q Consensus       120 p~~~v~~~agilFl~fG~~  138 (146)
                      ..+++++++|++++.+|++
T Consensus       166 ~~~~in~~~g~~l~~~~v~  184 (185)
T TIGR00949       166 QQKWIDGITGALFVGFGIR  184 (185)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            3467889999999999975

>COG4280 Predicted membrane protein [Function unknown]

Probab=88.51  E-value=1.5  Score=36.59  Aligned_cols=126  Identities=21%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHhhHHhhhhccCcC-----chHHh--hc-ccchhhhhhh-HHHHHHHHHHHhhcccchHHHHHHHHh
Q 032163           15 QVSQHFIILTSWFHGLRISKCFFSFQA-----DDELK--KQ-RRPFLLQFFS-PIFLKAFSITFFGEWGDKSQLATIGLA   85 (146)
Q Consensus        15 ~~~~~~~~~~~~~FG~~~l~~~~~~~~-----~~~~~--~~-~~~~~~~~~~-~~f~~aF~liFlAElGDKTQlati~LA   85 (146)
                      +++|-++..++++||-|-.|.+..+-.     .+|++  ++ ..+.-+..++ -.+.++|-.+.+ | |=.-.++.++|.
T Consensus        64 n~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~leE~~~ldq~e~g~~~la~l~~fk~v~L-e-glEv~~iVialg  141 (236)
T COG4280          64 NYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKLEEGIVLDQEEEGFSKLALLVVFKVVAL-E-GLEVSLIVIALG  141 (236)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhhHhhhhhcccccccchhhhHHHHhHHHHH-h-hheeeeeeeeec
Confidence            345666666899999998887654411     11111  00 0000001111 134444432222 1 223345556666


Q ss_pred             ccc-CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163           86 ADE-NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus        86 a~~-~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~  143 (146)
                      +.+ .+..-..|+..|..+.-.++..+-+.++ ++|++.++..+|.+...||..=+-++
T Consensus       142 aa~sqwleAi~gagfA~vlvlvl~~~lh~pla-rvpe~~lKfvag~lL~sfGtfWlgeg  199 (236)
T COG4280         142 AASSQWLEAIMGAGFASVLVLVLTAILHSPLA-RVPEPHLKFVAGALLFSFGTFWLGEG  199 (236)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh-hCCchhHHHHHHHHHHHhhHHHhccc
Confidence            654 4556677888888888888888777774 78999999999999999998766543

>COG0730 Predicted permeases [General function prediction only]

Probab=88.36  E-value=5.4  Score=32.29  Aligned_cols=44  Identities=18%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163          100 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus       100 al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~  143 (146)
                      .+.+.+.++...|..+.+++|++.++++-+.+.+..++.++++.
T Consensus       211 ~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~  254 (258)
T COG0730         211 LLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRG  254 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999999999999999999999999887654

>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function

Probab=88.00  E-value=1.3  Score=29.22  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 032163           99 IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG  136 (146)
Q Consensus        99 ~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG  136 (146)
                      .-..+++.++..+|+.+.+++ .++.+++++++++.+|
T Consensus        31 ~~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG   67 (67)
T PF02659_consen   31 IFQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG   67 (67)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence            445778888999999999855 4779999999998875

>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein

Probab=87.93  E-value=2.9  Score=34.10  Aligned_cols=57  Identities=18%  Similarity=0.205  Sum_probs=47.3

Q ss_pred             ccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163           87 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  144 (146)
Q Consensus        87 ~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~  144 (146)
                      +++++.+.+|-.+|...--..++.++.-+ ..+|++|+--.-|++=+.+|++.+++.+
T Consensus        21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~~~~   77 (193)
T TIGR00779        21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAIKGE   77 (193)
T ss_pred             CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHhccc
Confidence            56899999999999988877777755544 6899999977888888999999887754

These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=87.78  E-value=13  Score=29.78  Aligned_cols=23  Identities=39%  Similarity=0.522  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC
Q 032163          121 EKIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus       121 ~~~v~~~agilFl~fG~~~L~~~  143 (146)
                      .+++++..|++|+.+|+++++..
T Consensus       185 ~~~~~~~~G~~li~~g~~l~~~~  207 (208)
T COG1280         185 SRIINRLFGVLLIGFGVKLALSR  207 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            78999999999999999988754

>PRK10958 leucine export protein LeuE; Provisional

Probab=87.57  E-value=13  Score=29.65  Aligned_cols=21  Identities=19%  Similarity=0.110  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcC
Q 032163          122 KIVALSGGVLFIVFGIQSFLS  142 (146)
Q Consensus       122 ~~v~~~agilFl~fG~~~L~~  142 (146)
                      ++++++.|++|+.+|++++.+
T Consensus       190 ~~i~~~~g~~l~~~~i~l~~~  210 (212)
T PRK10958        190 AGGNSLVGLLFVGFAAKLATA  210 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            678999999999999998754

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=87.06  E-value=4.8  Score=32.62  Aligned_cols=55  Identities=22%  Similarity=0.315  Sum_probs=47.6

Q ss_pred             CCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcCCC
Q 032163           89 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV  144 (146)
Q Consensus        89 ~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~~~  144 (146)
                      +++.|.+|-.+|..+.-..+..++..+. .+|++|+--.-|++=+.+|++.++.++
T Consensus        24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~~~~   78 (191)
T PF03596_consen   24 RRRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALFSGE   78 (191)
T ss_pred             ChhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5889999999999988888888777764 999999988889999999999887654

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=85.65  E-value=7.7  Score=31.96  Aligned_cols=59  Identities=31%  Similarity=0.314  Sum_probs=46.9

Q ss_pred             HHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhcC
Q 032163           79 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS  142 (146)
Q Consensus        79 lati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~~  142 (146)
                      ++++++  ..+|+.++.|...+...+-..+-.+.+++.++   .++++.++.+-...|+.++.+
T Consensus       115 ~A~~gi--t~~~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~  173 (215)
T TIGR03716       115 LAAVAL--SGQFWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLE  173 (215)
T ss_pred             HHHHHh--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            455555  37899999999999999998888888888653   567788888888888888775

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=85.64  E-value=15  Score=28.69  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Q 032163          121 EKIVALSGGVLFIVFGIQSFLS  142 (146)
Q Consensus       121 ~~~v~~~agilFl~fG~~~L~~  142 (146)
                      .+++++++|.+|+.+|++.+.+
T Consensus       182 ~~~i~~~~g~~li~~~~~l~~~  203 (205)
T PRK10520        182 MKALNKIFGSLFMLVGALLASA  203 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            4678899999999999998765

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=82.21  E-value=23  Score=28.11  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=48.2

Q ss_pred             HHHHHHHHhcccCCcEEeehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHhc
Q 032163           77 SQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL  141 (146)
Q Consensus        77 TQlati~LAa~~~p~~V~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~~L~  141 (146)
                      |=+++++++  .+++.++.|.+.+...+-..+-.+.+.+.++   .++++.++.+-...|+.++.
T Consensus       123 SV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~  182 (183)
T PF03741_consen  123 SVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLIL  182 (183)
T ss_pred             HHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence            345566666  7899999999999999999999999998764   56788888877788877764

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=80.93  E-value=2.9  Score=33.91  Aligned_cols=47  Identities=15%  Similarity=0.069  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhh-----ccHHHHHHHHHHHHHHHHHHHhcCC
Q 032163           97 GIIGQALCTTAAVIGGKSLASQ-----ISEKIVALSGGVLFIVFGIQSFLSP  143 (146)
Q Consensus        97 a~~al~l~t~laV~~G~~l~~~-----ip~~~v~~~agilFl~fG~~~L~~~  143 (146)
                      ...-..++.++-+.+++.+++.     +=+|+=+++.-++|+..|++.++++
T Consensus       131 ~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~l~p~v~I~LGi~Il~es  182 (191)
T PF03596_consen  131 ILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRWLVPIVYIGLGIYILIES  182 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhcccHHHHHHHHhCceeeEeC
Confidence            4445667778888888888753     2378889999999999999988875

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised

Probab=80.89  E-value=5.5  Score=31.32  Aligned_cols=45  Identities=18%  Similarity=0.111  Sum_probs=38.2

Q ss_pred             eehHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 032163           94 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ  138 (146)
Q Consensus        94 ~~Ga~~al~l~t~laV~~G~~l~~~ip~~~v~~~agilFl~fG~~  138 (146)
                      .+...+.+...+.++..+|+.+.+++|+++.+++..++.+..|+.
T Consensus       195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~  239 (240)
T PF01925_consen  195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK  239 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            344455578889999999999999999999999999998888865

; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00