Citrus Sinensis ID: 032165

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNRFTF
cccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEcccEEEEEccccHHHHHHHHHccccEEEEccccccccccccccccccccccccccccc
cccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccEcccEEccccEEEEEcccccHHHHHHHEccccEEEEcccccccccHHHHHHHHHcccccccEEEc
massgeewspdtLAFMDLAIQQAKLALdslevpvgcvilEDGKviaagrnrttetrnaTRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSkcclyvtcepcIMCAAALSILGIKEVYYgcanekfggcgsILSLHlsdskmlnrftf
massgeewspDTLAFMDLAIQQAKLALDSLEVPVGCVILEdgkviaagrnrttetrnatrhAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILslhlsdskmlnrftf
MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIaagrnrttetrnatrhaeMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNRFTF
***********TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRN***********AEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHL***********
************LAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKML*****
********SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNRFTF
*******WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNRFTF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNRFTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query146 2.2.26 [Sep-21-2011]
Q5E9J7191 tRNA-specific adenosine d yes no 0.849 0.649 0.527 1e-32
Q7Z6V5191 tRNA-specific adenosine d yes no 0.849 0.649 0.511 9e-32
Q6P6J0191 tRNA-specific adenosine d yes no 0.849 0.649 0.503 2e-31
Q0P4H0170 tRNA-specific adenosine d yes no 0.794 0.682 0.529 4e-30
Q4V7V8175 tRNA-specific adenosine d N/A no 0.821 0.685 0.495 3e-28
Q5RIV4214 tRNA-specific adenosine d yes no 0.794 0.542 0.512 1e-26
O94642389 tRNA-specific adenosine d yes no 0.664 0.249 0.443 9e-20
P47058 250 tRNA-specific adenosine d yes no 0.801 0.468 0.403 2e-19
P0DA21171 tRNA-specific adenosine d yes no 0.815 0.695 0.372 3e-19
Q5XE14171 tRNA-specific adenosine d N/A no 0.815 0.695 0.372 3e-19
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1 Back     alignment and function desciption
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/127 (52%), Positives = 89/127 (70%), Gaps = 3/127 (2%)

Query: 11  DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVL 70
           +T  +M+ A+Q AK ALD+ EVPVGC+++ + +V+  GRN   +T+NATRHAEM AID  
Sbjct: 21  ETEKWMEQAMQMAKDALDNTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQA 80

Query: 71  LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
           LD  ++ G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+
Sbjct: 81  LDWCRRRGRSPSEV---FEHTVLYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGSV 137

Query: 131 LSLHLSD 137
           L +  +D
Sbjct: 138 LDIASAD 144
Probably participates in deamination of adenosine-34 to inosine in many tRNAs.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: -
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1 Back     alignment and function description
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2 SV=2 Back     alignment and function description
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tad2 PE=3 SV=2 Back     alignment and function description
>sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1 SV=1 Back     alignment and function description
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1 Back     alignment and function description
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
356549373182 PREDICTED: tRNA-specific adenosine deami 0.917 0.736 0.850 1e-61
255628537182 unknown [Glycine max] 0.917 0.736 0.843 5e-61
224087290155 predicted protein [Populus trichocarpa] 0.931 0.877 0.838 6e-61
356564819182 PREDICTED: tRNA-specific adenosine deami 0.917 0.736 0.828 8e-61
296090277205 unnamed protein product [Vitis vinifera] 0.876 0.624 0.875 1e-59
449457197191 PREDICTED: tRNA-specific adenosine deami 0.924 0.706 0.814 4e-59
255580984223 tRNA-specific adenosine deaminase subuni 0.917 0.600 0.813 8e-59
124360458178 CMP/dCMP deaminase, zinc-binding [Medica 0.924 0.758 0.8 9e-59
357508883191 tRNA-specific adenosine deaminase [Medic 0.924 0.706 0.729 6e-56
297847068192 EMB2191 [Arabidopsis lyrata subsp. lyrat 0.952 0.723 0.741 2e-55
>gi|356549373|ref|XP_003543068.1| PREDICTED: tRNA-specific adenosine deaminase 2 [Glycine max] Back     alignment and taxonomy information
 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/134 (85%), Positives = 126/134 (94%)

Query: 9   SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAID 68
           S +TLAFM+LAIQQAKLALD LEVPVGCVI+EDGKVIA+GRNRTTETRNATRHAEMEAID
Sbjct: 3   SSETLAFMELAIQQAKLALDVLEVPVGCVIVEDGKVIASGRNRTTETRNATRHAEMEAID 62

Query: 69  VLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCG 128
           VLL QWQK+GLS SE+AEKFS C LYVTCEPCIMCA+ALSILGIKEV+YGC+N+KFGGCG
Sbjct: 63  VLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCG 122

Query: 129 SILSLHLSDSKMLN 142
           SILSLHLS++  LN
Sbjct: 123 SILSLHLSNTAPLN 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255628537|gb|ACU14613.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224087290|ref|XP_002308113.1| predicted protein [Populus trichocarpa] gi|222854089|gb|EEE91636.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356564819|ref|XP_003550645.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|296090277|emb|CBI40096.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449457197|ref|XP_004146335.1| PREDICTED: tRNA-specific adenosine deaminase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255580984|ref|XP_002531310.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus communis] gi|223529101|gb|EEF31082.1| tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|124360458|gb|ABN08468.1| CMP/dCMP deaminase, zinc-binding [Medicago truncatula] Back     alignment and taxonomy information
>gi|357508883|ref|XP_003624730.1| tRNA-specific adenosine deaminase [Medicago truncatula] gi|355499745|gb|AES80948.1| tRNA-specific adenosine deaminase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297847068|ref|XP_002891415.1| EMB2191 [Arabidopsis lyrata subsp. lyrata] gi|297337257|gb|EFH67674.1| EMB2191 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
TAIR|locus:505006173182 emb2191 "embryo defective 2191 0.917 0.736 0.634 5.2e-42
UNIPROTKB|E2R9C9228 ADAT2 "Uncharacterized protein 0.849 0.543 0.440 4.8e-23
UNIPROTKB|F1S713191 ADAT2 "Uncharacterized protein 0.849 0.649 0.433 1e-22
UNIPROTKB|Q5E9J7191 DEADC1 "tRNA-specific adenosin 0.849 0.649 0.440 1.3e-22
UNIPROTKB|Q7Z6V5191 ADAT2 "tRNA-specific adenosine 0.849 0.649 0.425 5.5e-22
RGD|1309642155 Adat2 "adenosine deaminase, tR 0.849 0.8 0.417 9e-22
MGI|MGI:1914007191 Adat2 "adenosine deaminase, tR 0.849 0.649 0.417 1.1e-21
UNIPROTKB|F1P565183 ADAT2 "Uncharacterized protein 0.863 0.688 0.426 2.1e-20
ZFIN|ZDB-GENE-041014-360239 adat2 "adenosine deaminase, tR 0.794 0.485 0.411 2.8e-18
DICTYBASE|DDB_G0288099254 DDB_G0288099 "adenosine deamin 0.815 0.468 0.377 1.6e-17
TAIR|locus:505006173 emb2191 "embryo defective 2191" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 85/134 (63%), Positives = 98/134 (73%)

Query:     6 EEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXME 65
             E+   D+  +M  A+ QAKLAL++LEVPVGCV LEDGKVI                  ME
Sbjct:     3 EDHCEDSHNYMGFALHQAKLALEALEVPVGCVFLEDGKVIASGRNRTNETRNATRHAEME 62

Query:    66 AIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFG 125
             AID L+ QWQK+GLS S++AEKFSKC LYVTCEPCIMCA+ALS LGIKEVYYGC N+KFG
Sbjct:    63 AIDQLVGQWQKDGLSPSQVAEKFSKCVLYVTCEPCIMCASALSFLGIKEVYYGCPNDKFG 122

Query:   126 GCGSILSLHLSDSK 139
             GCGSILSLHL   +
Sbjct:   123 GCGSILSLHLGSEE 136
GO:0003824 "catalytic activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016787 "hydrolase activity" evidence=IEA
UNIPROTKB|E2R9C9 ADAT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S713 ADAT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9J7 DEADC1 "tRNA-specific adenosine deaminase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z6V5 ADAT2 "tRNA-specific adenosine deaminase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309642 Adat2 "adenosine deaminase, tRNA-specific 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914007 Adat2 "adenosine deaminase, tRNA-specific 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P565 ADAT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-360 adat2 "adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288099 DDB_G0288099 "adenosine deaminase, tRNA-specific" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5E9J7ADAT2_BOVIN3, ., 5, ., 4, ., -0.52750.84930.6492yesno
Q6P6J0ADAT2_MOUSE3, ., 5, ., 4, ., -0.50390.84930.6492yesno
Q0P4H0ADAT2_XENTR3, ., 5, ., 4, ., -0.52940.79450.6823yesno
Q7Z6V5ADAT2_HUMAN3, ., 5, ., 4, ., -0.51180.84930.6492yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.4.1LOW CONFIDENCE prediction!
3rd Layer3.5.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00060623
hypothetical protein (155 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_XVI0748
adenylosuccinate synthase (EC-6.3.4.4); Plays an important role in the de novo pathway of purin [...] (491 aa)
•     • 0.489
gw1.III.614.1
GMP synthetase (EC-6.3.5.2) (434 aa)
•  •    0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 1e-40
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 1e-38
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 8e-21
PRK10860172 PRK10860, PRK10860, tRNA-specific adenosine deamin 1e-17
cd01284115 cd01284, Riboflavin_deaminase-reductase, Riboflavi 3e-10
COG0117146 COG0117, RibD, Pyrimidine deaminase [Coenzyme meta 6e-10
COG2131164 COG2131, ComEB, Deoxycytidylate deaminase [Nucleot 4e-09
cd01286131 cd01286, deoxycytidylate_deaminase, Deoxycytidylat 2e-07
cd0078696 cd00786, cytidine_deaminase-like, Cytidine and deo 2e-06
TIGR00326 344 TIGR00326, eubact_ribD, riboflavin biosynthesis pr 6e-06
PHA02588168 PHA02588, cd, deoxycytidylate deaminase; Provision 6e-06
TIGR02571151 TIGR02571, ComEB, ComE operon protein 2 1e-04
pfam14439113 pfam14439, Bd3614-deam, Bd3614-like deaminase 1e-04
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information 
 Score =  131 bits (331), Expect = 1e-40
 Identities = 50/118 (42%), Positives = 62/118 (52%), Gaps = 10/118 (8%)

Query: 16  MDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
           M LAI+ A+ AL   EVP G VI++ DGKVIA G NR  +  + T HAE+ AI     + 
Sbjct: 1   MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRL 60

Query: 75  QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILS 132
                         S C LY T EPC MCA AL    IK V YG ++ K GG G ++ 
Sbjct: 61  GS---------YLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFLIE 109

These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source. Length = 109
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase Back     alignment and domain information
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain Back     alignment and domain information
>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD Back     alignment and domain information
>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional Back     alignment and domain information
>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2 Back     alignment and domain information
>gnl|CDD|206605 pfam14439, Bd3614-deam, Bd3614-like deaminase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 146
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 100.0
PRK10860172 tRNA-specific adenosine deaminase; Provisional 100.0
cd01285109 nucleoside_deaminase Nucleoside deaminases include 100.0
TIGR02571151 ComEB ComE operon protein 2. This protein is found 100.0
PHA02588168 cd deoxycytidylate deaminase; Provisional 99.98
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.98
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.97
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.97
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 99.97
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.97
PRK10786 367 ribD bifunctional diaminohydroxyphosphoribosylamin 99.96
PLN02807 380 diaminohydroxyphosphoribosylaminopyrimidine deamin 99.95
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 99.95
TIGR00326 344 eubact_ribD riboflavin biosynthesis protein RibD. 99.95
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.94
KOG2771344 consensus Subunit of tRNA-specific adenosine-34 de 99.88
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 99.85
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.84
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 99.53
PRK06848139 hypothetical protein; Validated 99.32
PF14439136 Bd3614-deam: Bd3614-like deaminase 99.29
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 99.27
PRK12411132 cytidine deaminase; Provisional 99.24
PRK08298136 cytidine deaminase; Validated 99.23
PRK05578131 cytidine deaminase; Validated 99.2
TIGR01355 283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 99.06
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 98.86
PLN02402 303 cytidine deaminase 98.86
PRK09027295 cytidine deaminase; Provisional 98.76
PLN02182 339 cytidine deaminase 98.72
PRK09027 295 cytidine deaminase; Provisional 98.68
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 98.46
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 97.94
PLN02402303 cytidine deaminase 97.81
PF14437146 MafB19-deam: MafB19-like deaminase 97.48
PF08211124 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam 97.11
PF14431125 YwqJ-deaminase: YwqJ-like deaminase 95.82
PF14440118 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase 94.44
PF14424133 Toxin-deaminase: The BURPS668_1122 family of deami 94.08
PF08210188 APOBEC_N: APOBEC-like N-terminal domain; InterPro: 92.45
PF14441142 OTT_1508_deam: OTT_1508-like deaminase 88.08
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-38  Score=229.36  Aligned_cols=125  Identities=42%  Similarity=0.632  Sum_probs=114.8

Q ss_pred             CChhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhc
Q 032165            8 WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE   86 (146)
Q Consensus         8 ~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~-~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~   86 (146)
                      ...++..||++|+++|+++.+.++.|||||||+ +|+||+.|+|...+..+|+.|||+.||+++.+.+.         .+
T Consensus         4 ~~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~---------~~   74 (152)
T COG0590           4 LSEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLG---------NY   74 (152)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhC---------CC
Confidence            456788999999999999988889999999999 99999999999999999999999999999998853         36


Q ss_pred             cCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCCC
Q 032165           87 KFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNR  143 (146)
Q Consensus        87 ~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln~  143 (146)
                      .+.+||||+|+|||+||++||+|+||+||||+.++++.|+.++.++++..  ..+||
T Consensus        75 ~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~--~~~~~  129 (152)
T COG0590          75 RLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKD--PRLNH  129 (152)
T ss_pred             CcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccC--CCCCc
Confidence            78999999999999999999999999999999999999999999999885  55553

>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification] Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase Back     alignment and domain information
>PF14431 YwqJ-deaminase: YwqJ-like deaminase Back     alignment and domain information
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase Back     alignment and domain information
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases Back     alignment and domain information
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme Back     alignment and domain information
>PF14441 OTT_1508_deam: OTT_1508-like deaminase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
3dh1_A189 Crystal Structure Of Human Trna-Specific Adenosine- 2e-23
2nx8_A179 The Crystal Structure Of The Trna-Specific Adenosin 1e-14
2b3j_A159 Crystal Structure Of Staphylococcus Aureus Trna Ade 2e-11
2a8n_A144 Biochemical And Structural Studies Of A-To-I Editin 4e-11
1wwr_A171 Crystal Structure Of Trna Adenosine Deaminase Tada 2e-10
1z3a_A168 Crystal Structure Of Trna Adenosine Deaminase Tada 1e-08
3ocq_A183 Crystal Structure Of Trna-Specific Adenosine Deamin 3e-08
>pdb|3DH1|A Chain A, Crystal Structure Of Human Trna-Specific Adenosine-34 Deaminase Subunit Adat2 Length = 189 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 11  DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIXXXXXXXXXXXXXXXXXXMEAIDVL 70
           +T  +M+ A+  AK AL++ EVPVGC+++ + +V+                  M AID +
Sbjct: 25  ETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 84
Query: 71  LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
           LD  +++G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+
Sbjct: 85  LDWCRQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 141
Query: 131 LSLHLSD 137
           L++  +D
Sbjct: 142 LNIASAD 148
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 Back     alignment and structure
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 Back     alignment and structure
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By Trna:a34 Deaminases At The Wobble Position Of Transfer Rna Length = 144 Back     alignment and structure
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171 Back     alignment and structure
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 Back     alignment and structure
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 1e-56
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 7e-40
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 9e-40
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 2e-38
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 6e-38
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 2e-37
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 3e-35
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 7e-35
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 2e-33
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 4e-11
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 6e-11
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 4e-09
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 1e-08
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 3e-08
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 6e-08
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189 Back     alignment and structure
 Score =  174 bits (443), Expect = 1e-56
 Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 3/120 (2%)

Query: 15  FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
           +M+ A+  AK AL++ EVPVGC+++ + +V+  GRN   +T+NATRHAEM AID +LD  
Sbjct: 29  WMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWC 88

Query: 75  QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
           +++G S SE+   F    LYVT EPCIMCAAAL ++ I  V YGC NE+FGGCGS+L++ 
Sbjct: 89  RQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIA 145
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168 Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 100.0
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 100.0
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 100.0
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 100.0
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 100.0
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 100.0
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 100.0
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 100.0
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 100.0
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 100.0
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 100.0
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.97
2b3z_A 373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 99.96
2hxv_A 360 Diaminohydroxyphosphoribosylaminopyrimidine deami 99.96
2g6v_A 402 Riboflavin biosynthesis protein RIBD; RIBD APO str 99.95
3g8q_A 278 Predicted RNA-binding protein, contains thump doma 99.91
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.81
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.78
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.77
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.75
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 99.59
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 99.53
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 99.52
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 99.5
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 99.4
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 99.28
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 99.24
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 99.2
1ctt_A 294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 99.14
4eg2_A 298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.75
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 98.65
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 95.85
3vow_A190 Probable DNA DC->DU-editing enzyme apobec-3C; anti 95.48
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.8e-39  Score=241.33  Aligned_cols=133  Identities=48%  Similarity=0.810  Sum_probs=114.1

Q ss_pred             CCChhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhc
Q 032165            7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE   86 (146)
Q Consensus         7 ~~~~~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~   86 (146)
                      ..+.++++||++|+++|+++...+++|||||||++|+||++|+|.++...+++.|||++||+++.+.....+.+.   .+
T Consensus        21 ~~~~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~---~~   97 (189)
T 3dh1_A           21 QSMEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSP---SE   97 (189)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCH---HH
T ss_pred             CChHHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCccc---cc
Confidence            345668899999999999998888999999999999999999998877789999999999999987644333221   23


Q ss_pred             cCCCcEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCC
Q 032165           87 KFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLN  142 (146)
Q Consensus        87 ~~~~~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln  142 (146)
                      .+.++|||||+|||+||+++|+|+||+||||+..+|+.|++++.+.++.......|
T Consensus        98 ~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~g  153 (189)
T 3dh1_A           98 VFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTG  153 (189)
T ss_dssp             HHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSS
T ss_pred             ccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcC
Confidence            57899999999999999999999999999999999999999998888764444444
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 146
d2g84a1189 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr 6e-28
d2a8na1130 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de 1e-21
d1wwra1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 2e-21
d1wkqa_158 c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub 1e-19
d1p6oa_156 c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S 8e-18
d1z3aa1156 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA 6e-16
d2b3ja1151 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA { 4e-12
d2b3za2145 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein 3e-11
d1vq2a_193 c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop 4e-10
d2hxva2147 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein 9e-08
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]

 Score = 99.8 bits (248), Expect = 6e-28
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 10  PDTLAFMDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAI 67
               A M   ++  +  + +   P    +   + G +IAAG NR    R +  HAE+ A+
Sbjct: 24  AAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILAL 83

Query: 68  DVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGC 127
                  Q    +    A+    C L  + EPC+MC  A+   G++ +     ++     
Sbjct: 84  S----LAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAI 139

Query: 128 GSILSLHLSD 137
           G        +
Sbjct: 140 GFDEGPRPEN 149
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130 Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151 Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158 Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156 Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Length = 151 Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 100.0
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 100.0
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 100.0
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 100.0
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 100.0
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 100.0
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 100.0
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 99.98
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.97
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 99.97
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 99.36
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 99.33
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 99.33
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 99.26
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 99.18
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 99.14
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 98.96
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytidine and deoxycytidylate deaminase CodA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.5e-40  Score=233.40  Aligned_cols=122  Identities=38%  Similarity=0.594  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEeecCCcCCCCCCccHHHHHHHHHHHHHhhCCCChhhhhccCCC
Q 032165           11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK   90 (146)
Q Consensus        11 ~~~~~m~~a~~~A~~a~~~~~~pvGavIv~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~   90 (146)
                      ++++||++|+++|+++...++.|||||||++|+||+.|+|.+.+..+++.|||+.||+++.+++.         ...+.+
T Consensus         2 ~~~~fM~~Al~~A~~a~~~~~~PVGavIV~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~---------~~~l~~   72 (130)
T d2a8na1           2 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALG---------QERLPG   72 (130)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHT---------CSCCTT
T ss_pred             cHHHHHHHHHHHHHHhhccCCCCEEEEEEECCeEEEeecccccccccccchhHHHHHHHHHHHhC---------CcCCCC
Confidence            57899999999999998889999999999999999999999888889999999999999988754         346789


Q ss_pred             cEEEEcCCChHHHHHHHHHhCCCEEEEeeeCCCCccccceeeecccccccCCC
Q 032165           91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNR  143 (146)
Q Consensus        91 ~~ly~t~ePC~mC~~al~~sgi~~Vvy~~~~~~~g~~~~~~~~~~~~~~~ln~  143 (146)
                      ++||+|+|||+||+++|+|+||+||||+..+|+.|+.++.+.++.  ...|||
T Consensus        73 ~tly~T~EPC~mC~~ai~~~gI~rVvyg~~d~~~g~~gs~~~l~~--~~~lnh  123 (130)
T d2a8na1          73 ADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFS--QPTCHH  123 (130)
T ss_dssp             CEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGG--STTCCC
T ss_pred             CEEecccccCHHHHHHHHHhccCEEEEEEcCCCCCCccchhhhhc--CCCCCC
Confidence            999999999999999999999999999999999999999999988  556666
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure