Citrus Sinensis ID: 032187

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MASIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPWQLPCPMQPLVASADMLQD
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHcHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHccc
Coil and Loop (DISEMBL)
masiqrqgssgsdsdpryanvdeRKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISginveipeipdplmkpwqlpcpmqplvasADMLQD
Flexible Loop (DISEMBL)
masiqrqgssgsdsdpryanvderkrkrmisnresarrsrmkkQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPWQLPCPMQPLVASADMLQD
Low Complexity Region (SEG)
MASIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPWQLPCPMQPLVASADMLQD
Disordered region (IsUnstruct)
************************************************************************QRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPWQLPCP*************
Disordered Region (DISOPRED)
*********************************E*A**SRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES***************LRSLNSVLQIWAEISG**********************************
Disordered Region (DISEMBL)
******************ANVDERKRKRMIS****************EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPWQLPCPMQPLVASADMLQD
Disordered Region (DISPRO)
*****************Y***********************KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPWQLPCPMQPLVAS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASIQRQGSSGSDSDPRYANVDERKRKRMISNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPWQLPCPMQPLVASADMLQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
P24068	151	Ocs element-binding facto	N/A	no	0.841	0.807	0.456	5e-24
Q9FGX2	145	Basic leucine zipper 1 OS	no	no	0.841	0.841	0.356	4e-11
P25032	354	DNA-binding protein EMBP-	N/A	no	0.648	0.265	0.339	1e-06
P23922	349	Transcription factor HBP-	N/A	no	0.462	0.191	0.428	2e-06
Q84JK2	285	Protein FD OS=Arabidopsis	no	no	0.386	0.196	0.474	3e-05
Q9SJN0	442	Protein ABSCISIC ACID-INS	no	no	0.331	0.108	0.5	8e-05
Q9FUD3	277	Basic leucine zipper 9 OS	no	no	0.448	0.234	0.338	0.0001
P12959	453	Regulatory protein opaque	N/A	no	0.455	0.145	0.373	0.0003
Q99091	296	Light-inducible protein C	N/A	no	0.434	0.212	0.333	0.0007
P42775	360	G-box-binding factor 2 OS	no	no	0.620	0.25	0.368	0.0008

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 84/127 (66%), Gaps = 5/127 (3%)

Query: 9   SSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNI 68
           +SGSD D   A    R+ KR +SNRESARRSR++KQ+ +++LV E+  L++ NA +    
Sbjct: 13  TSGSDGDS--AADTHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARA 70

Query: 69  DSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEI-PEIP--DPLMK 125
                +Y  +E  N +LR +A EL DRLRS+N VL++  E SG+ ++I  E+P  DPL++
Sbjct: 71  RDIASQYTRVEQENTVLRARAAELGDRLRSVNEVLRLVEEFSGVAMDIQEEMPADDPLLR 130

Query: 126 PWQLPCP 132
           PWQLP P
Sbjct: 131 PWQLPYP 137

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Zea mays (taxid: 4577)

>sp|Q9FGX2|BZIP1_ARATH Basic leucine zipper 1 OS=Arabidopsis thaliana GN=BZIP1 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 21/143 (14%)

Query: 9   SSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNI 68
           SSGSD       +DE+KRKR +SNRESARRSR+KKQK MED ++EI+ LE       +  
Sbjct: 8   SSGSD-------IDEKKRKRKLSNRESARRSRLKKQKLMEDTIHEISSLERRIKENSERC 60

Query: 69  DSSVQRYVEMESANNILRVQAMELTDRLRSL-----NSVLQIWAEISG-------INVEI 116
            +  QR   +E+ N  LR + + L+  +  L      + L +     G        N  I
Sbjct: 61  RAVKQRLDSVETENAGLRSEKIWLSSYVSDLENMIATTSLTLTQSGGGDCVDDQNANAGI 120

Query: 117 PEIPDPLMKPWQLPC-PMQPLVA 138
             + D    PW+L C  +QP+ +
Sbjct: 121 A-VGDCRRTPWKLSCGSLQPMAS 142

Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response.

Arabidopsis thaliana (taxid: 3702)

>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 9/103 (8%)

Query: 21  VDER---KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVE 77
           +DER   + +R  SNRESARRSR++KQ++ E+L  +++ L +AN  L+  +D   +    
Sbjct: 246 MDERELKRERRKQSNRESARRSRLRKQQECEELAQKVSELTAANGTLRSELDQLKKDCKT 305

Query: 78  MESANNILRVQAMELTDRLRSLN--SVLQIWAEISGINVEIPE 118
           ME+ N  L  + +   D+++     SV+   +    I VE PE
Sbjct: 306 METENKKLMGKILSHDDKMQQSEGPSVVTTLS----IQVEAPE 344

Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 22  DER---KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEM 78
           DER   K+KR +SNRESARRSR++KQ + E+L      L+S N+ L+  +D   + Y E+
Sbjct: 249 DERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEEL 308

Query: 79  ESANNILRVQ 88
            S N  L+ +
Sbjct: 309 LSKNTSLKAK 318

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q84JK2|FD_ARATH Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 11  GSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID 69
           G DS+    N   R+ KRMI NRESA RSR +KQ    +L  E+ HL++ NA LK+  D
Sbjct: 206 GQDSNEGSGN---RRHKRMIKNRESAARSRARKQAYTNELELEVAHLQAENARLKRQQD 261

Transcription factor required for the transition to flowering promoted by FT.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 21  VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNI 68
           V ER+++RMI NRESA RSR +KQ    +L  E+N L+  NA LK  +
Sbjct: 354 VVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKHAL 401

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUD3|BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 42/65 (64%)

Query: 22  DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESA 81
           D ++ +RM SNRESA+RSR +KQ+ + DL  +++ L+  N+ L + +  + Q++    + 
Sbjct: 120 DLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSAGTN 179

Query: 82  NNILR 86
           N +L+
Sbjct: 180 NRVLK 184

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 21  VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES 80
            +ER RK+  SNRESARRSR +K   +++L +++  L++ N+ L + I +  Q+Y +   
Sbjct: 225 TEERVRKKE-SNRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRRIAALNQKYNDANV 283

Query: 81  ANNILRV 87
            N +LR 
Sbjct: 284 DNRVLRA 290

Involved in the regulation of the endosperm-specific production of albumin b-32 and other zein proteins. It is a trans-acting transcriptional activator that binds to the consensus sequence 5'-GATGAYRTGR-3'.

Zea mays (taxid: 4577)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 42/63 (66%)

Query: 24  RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANN 83
           ++++R  SNRESARRSR++KQ + ++L   +++L   N +L++N+    +   E+ S N+
Sbjct: 198 KRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISEACAEVTSENH 257

Query: 84  ILR 86
            ++
Sbjct: 258 SIK 260

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P42775|GBF2_ARATH G-box-binding factor 2 OS=Arabidopsis thaliana GN=GBF2 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 5/95 (5%)

Query: 7   QGSSGSDSDPRYANVDERKR-KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLK 65
           Q S+G +  P+  N  E KR KR  SNRESARRSR++KQ + E L  +++ L + N  L+
Sbjct: 233 QNSAGMNGVPQPWNEKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMSLR 292

Query: 66  QNI----DSSVQRYVEMESANNILRVQAMELTDRL 96
             +    + S +  +E E+  + L+ QA   T+ L
Sbjct: 293 SKLGQLNNESEKLRLENEAILDQLKAQATGKTENL 327

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
255548457	144	Ocs element-binding factor, putative [Ri	0.972	0.979	0.720	5e-54
224064531	144	predicted protein [Populus trichocarpa]	0.979	0.986	0.704	6e-51
297821154	146	ATBZIP53 [Arabidopsis lyrata subsp. lyra	0.986	0.979	0.645	1e-47
15228754	146	basic region/leucine zipper motif 53 pro	0.986	0.979	0.638	3e-46
302398641	141	BZIP domain class transcription factor [	0.958	0.985	0.643	3e-46
77999786	144	bZIP transcription factor [Capsicum annu	0.986	0.993	0.583	5e-42
356505631	150	PREDICTED: ocs element-binding factor 1	0.917	0.886	0.617	1e-41
9650826	147	common plant regulatory factor 6 [Petros	0.993	0.979	0.568	1e-41
351721812	150	bZIP transcription factor bZIP41 [Glycin	0.979	0.946	0.582	2e-41
224969393	144	bZIP transcription factor [Tamarix hispi	0.937	0.944	0.579	9e-40

>gi|255548457|ref|XP_002515285.1| Ocs element-binding factor, putative [Ricinus communis] gi|223545765|gb|EEF47269.1| Ocs element-binding factor, putative [Ricinus communis]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 125/143 (87%), Gaps = 2/143 (1%)

Query: 4   IQRQG--SSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESAN 61
           +QRQ   SSGSD DPRYANVDERKRKRMISNRESARRSR +KQKQMEDLVNE++ +++ N
Sbjct: 1   MQRQATTSSGSDCDPRYANVDERKRKRMISNRESARRSRQRKQKQMEDLVNEVSQIQNEN 60

Query: 62  AMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPD 121
             L+Q+I+ + QRY EMESANN+LR QAMELT+RLRSLNSVLQ+  + SG+ VEIPEIPD
Sbjct: 61  GQLRQSINVNSQRYAEMESANNVLRAQAMELTERLRSLNSVLQLVEDYSGLAVEIPEIPD 120

Query: 122 PLMKPWQLPCPMQPLVASADMLQ 144
           PL++PWQLPCP+QP++ASADM +
Sbjct: 121 PLLRPWQLPCPVQPIMASADMFE 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064531|ref|XP_002301511.1| predicted protein [Populus trichocarpa] gi|222843237|gb|EEE80784.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 121/142 (85%)

Query: 3   SIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANA 62
           S ++  SSGSDSDPRYANVDERKRKRMISNRESARRSRM+KQKQM DLVNE++ L++ N 
Sbjct: 2   SARQAASSGSDSDPRYANVDERKRKRMISNRESARRSRMRKQKQMGDLVNEVSKLQNENN 61

Query: 63  MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDP 122
            L Q I+   QR + MESANN+LR QA+ELT+RLRSLNSVLQI  ++SG+++EIPEIPDP
Sbjct: 62  QLMQGINVGQQRRMAMESANNVLRAQAVELTERLRSLNSVLQIVEDVSGLSMEIPEIPDP 121

Query: 123 LMKPWQLPCPMQPLVASADMLQ 144
           L+KPWQLPC + P++ASADM Q
Sbjct: 122 LLKPWQLPCSVMPIMASADMFQ 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821154|ref|XP_002878460.1| ATBZIP53 [Arabidopsis lyrata subsp. lyrata] gi|297324298|gb|EFH54719.1| ATBZIP53 [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 118/144 (81%), Gaps = 1/144 (0%)

Query: 1   MASIQRQGSSGSDSDPRYANV-DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLES 59
           M S+QRQ S  SD+DPRYA V DERKRKRMISNRESARRSRM+KQKQ+ DL+NE+  L++
Sbjct: 1   MGSLQRQTSPESDNDPRYATVTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKN 60

Query: 60  ANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEI 119
            NA + + +D + ++Y+EMES NN+LR QA+ELTDRLRSLNSVL++  EISG  ++IPEI
Sbjct: 61  DNAKITEQVDEASKKYIEMESKNNVLRAQALELTDRLRSLNSVLEMVEEISGQALDIPEI 120

Query: 120 PDPLMKPWQLPCPMQPLVASADML 143
           P+ +  PWQ+PCPMQP+ ASADM 
Sbjct: 121 PESMQNPWQMPCPMQPIRASADMF 144

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228754|ref|NP_191801.1| basic region/leucine zipper motif 53 protein [Arabidopsis thaliana] gi|15278040|gb|AAK94024.1|AF400620_1 transcription factor-like protein bZIP53 [Arabidopsis thaliana] gi|7340713|emb|CAB82956.1| bZIP transcription factor-like protein [Arabidopsis thaliana] gi|15292979|gb|AAK93600.1| putative bZIP transcription factor [Arabidopsis thaliana] gi|20259249|gb|AAM14360.1| putative bZIP transcription factor [Arabidopsis thaliana] gi|332646829|gb|AEE80350.1| basic region/leucine zipper motif 53 protein [Arabidopsis thaliana]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 116/144 (80%), Gaps = 1/144 (0%)

Query: 1   MASIQRQGSSGSDSDPRYANV-DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLES 59
           M S+Q Q S  SD+DPRYA V DERKRKRMISNRESARRSRM+KQKQ+ DL+NE+  L++
Sbjct: 1   MGSLQMQTSPESDNDPRYATVTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKN 60

Query: 60  ANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEI 119
            NA + + +D + ++Y+EMES NN+LR QA ELTDRLRSLNSVL++  EISG  ++IPEI
Sbjct: 61  DNAKITEQVDEASKKYIEMESKNNVLRAQASELTDRLRSLNSVLEMVEEISGQALDIPEI 120

Query: 120 PDPLMKPWQLPCPMQPLVASADML 143
           P+ +  PWQ+PCPMQP+ ASADM 
Sbjct: 121 PESMQNPWQMPCPMQPIRASADMF 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398641|gb|ADL36615.1| BZIP domain class transcription factor [Malus x domestica]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/143 (64%), Positives = 117/143 (81%), Gaps = 4/143 (2%)

Query: 1   MASIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESA 60
           M+S+QRQ SSGSD    +A VDE+KRKRM+SNRESARRSRMKKQKQM+DL  EI  LE +
Sbjct: 1   MSSLQRQSSSGSDG---FATVDEKKRKRMLSNRESARRSRMKKQKQMDDLTTEITRLEMS 57

Query: 61  NAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIP 120
           N  ++Q +D+  + + E+ESANN+LR QAMELTDRL+SLNSVL I+ E+SG +V+IPE+ 
Sbjct: 58  NNQVRQTLDARERSHNEIESANNVLRAQAMELTDRLQSLNSVLHIFEEVSGFSVDIPEMH 117

Query: 121 DPLMKPWQLPCPMQPLVASADML 143
           DPL+KPWQ+PCP QP+ AS+DM 
Sbjct: 118 DPLLKPWQIPCP-QPIPASSDMF 139

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999786|gb|ABB17073.1| bZIP transcription factor [Capsicum annuum]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 112/144 (77%), Gaps = 1/144 (0%)

Query: 1   MASIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESA 60
           MAS Q+  SSGSD   RYAN DERKRKRM SNRESARRSRM+KQ+ +E+L++E+  L++ 
Sbjct: 1   MASTQQPASSGSDGQ-RYANYDERKRKRMESNRESARRSRMRKQQHLEELMSELTQLQNQ 59

Query: 61  NAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIP 120
           N +  + ID+  + Y  +E+ NN+LR Q  ELT+RL SLNS+ + WA+ +G+ V+IPEIP
Sbjct: 60  NTIWSKRIDAVGKNYHTVEAENNVLRAQIAELTERLDSLNSLTRFWADANGLAVDIPEIP 119

Query: 121 DPLMKPWQLPCPMQPLVASADMLQ 144
           D L++PWQLPCP+QP+ ASADMLQ
Sbjct: 120 DALLEPWQLPCPIQPITASADMLQ 143

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505631|ref|XP_003521593.1| PREDICTED: ocs element-binding factor 1 [Glycine max] gi|255642241|gb|ACU21385.1| unknown [Glycine max]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 111/136 (81%), Gaps = 3/136 (2%)

Query: 9   SSGSDS-DPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQN 67
           SSGS+  DP    +DERKRKRM+SNRESARRSRM+KQKQ+EDL +E++ L+SAN  L +N
Sbjct: 15  SSGSEGGDPHI--IDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRLQSANKKLAEN 72

Query: 68  IDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPW 127
           I++  +  VE E+AN+ILR Q MEL DRLR LNS+L+I  E+ G++VEIPEIPDPL+KPW
Sbjct: 73  IEAKEEACVETEAANSILRAQTMELADRLRFLNSILEIAEEVEGLSVEIPEIPDPLLKPW 132

Query: 128 QLPCPMQPLVASADML 143
           Q+P P+QP++A+A+M 
Sbjct: 133 QIPHPIQPIMATANMF 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9650826|emb|CAC00657.1| common plant regulatory factor 6 [Petroselinum crispum]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 109/146 (74%), Gaps = 2/146 (1%)

Query: 1   MASIQRQG--SSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLE 58
           MAS+Q Q   SSGSD D RYA  DE+KRKRMISNRESARRSRMKKQ+ ++ L+ E++ L+
Sbjct: 1   MASVQNQNQVSSGSDGDLRYATFDEKKRKRMISNRESARRSRMKKQQHVDKLIAEMSQLQ 60

Query: 59  SANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPE 118
           S N ++ Q I+ +   +  + S NN+LR Q  ELTDRL SLNSVL I  E+SG+ ++IP+
Sbjct: 61  SQNKVVTQKINEATDMFFGVVSENNVLRAQLSELTDRLYSLNSVLHIVEEVSGLAMDIPQ 120

Query: 119 IPDPLMKPWQLPCPMQPLVASADMLQ 144
           +PD LM+PWQLPCP QP+  SA+M +
Sbjct: 121 VPDTLMEPWQLPCPAQPITTSANMFK 146

Source: Petroselinum crispum

Species: Petroselinum crispum

Genus: Petroselinum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721812|ref|NP_001237222.1| bZIP transcription factor bZIP41 [Glycine max] gi|113367232|gb|ABI34673.1| bZIP transcription factor bZIP41 [Glycine max] gi|255627295|gb|ACU13992.1| unknown [Glycine max]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 113/146 (77%), Gaps = 4/146 (2%)

Query: 2   ASIQRQ----GSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHL 57
           +SIQ+Q     SSGS+       +DERKRKRM+SNRESARRSRM+KQKQ+EDL +E++ L
Sbjct: 3   SSIQQQRSTATSSGSEGGGDPQMIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRL 62

Query: 58  ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIP 117
           + AN  L +NI +  +  VE E+AN+ILR Q MEL DRLR LNS+L+I  E+ G++VEIP
Sbjct: 63  QGANKKLAENIKAKEEACVETEAANSILRAQTMELADRLRFLNSILEIAEEVEGLSVEIP 122

Query: 118 EIPDPLMKPWQLPCPMQPLVASADML 143
           EIPDPL+KPWQ+P P+QP++A+A+M 
Sbjct: 123 EIPDPLLKPWQIPHPIQPIMATANMF 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224969393|gb|ACN71235.1| bZIP transcription factor [Tamarix hispida]

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 110/138 (79%), Gaps = 2/138 (1%)

Query: 9   SSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNI 68
           SSGSD D RYAN+DERKRKRMISNRESARRSRM+KQ+ + DL+N+++ L++ N+     I
Sbjct: 6   SSGSDGDVRYANLDERKRKRMISNRESARRSRMRKQQHLGDLLNQVSKLQAENSQFVAKI 65

Query: 69  DSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPDPLMKPWQ 128
           +S+ Q YV++ES NN+LR Q MELTDRL SLNS+L++   +SG+N ++ E+PD L++PWQ
Sbjct: 66  NSASQMYVKVESENNVLRAQLMELTDRLNSLNSLLRVMENVSGLNADVEELPDALLEPWQ 125

Query: 129 LPCPMQ-PLVA-SADMLQ 144
            PCP+Q P++  +ADM Q
Sbjct: 126 SPCPVQLPVMTNTADMFQ 143

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2096024	146	BZIP53 "AT3G62420" [Arabidopsi	0.979	0.972	0.643	2.1e-45
UNIPROTKB|Q08418	148	lip19 "Basic/leucine zipper pr	0.958	0.939	0.450	1.1e-25
TAIR|locus:2018411	173	bZIP44 "AT1G75390" [Arabidopsi	0.993	0.832	0.422	1.8e-23
TAIR|locus:2139584	159	GBF6 "AT4G34590" [Arabidopsis	0.648	0.591	0.469	2.5e-19
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.8	0.678	0.398	1.1e-18
TAIR|locus:2157999	145	bZIP1 "AT5G49450" [Arabidopsis	0.889	0.889	0.350	3.9e-12
TAIR|locus:2202852	148	bZIP4 "AT1G59530" [Arabidopsis	0.668	0.655	0.386	1.3e-11
TAIR|locus:2097315	156	bZIP5 "AT3G49760" [Arabidopsis	0.634	0.589	0.397	1.3e-11
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.696	0.612	0.330	2.5e-10
TAIR|locus:2827461	166	bZIP48 "AT2G04038" [Arabidopsi	0.662	0.578	0.38	4.1e-10

TAIR|locus:2096024 BZIP53 "AT3G62420" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 92/143 (64%), Positives = 116/143 (81%)

Query:     1 MASIQRQGSSGSDSDPRYANV-DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLES 59
             M S+Q Q S  SD+DPRYA V DERKRKRMISNRESARRSRM+KQKQ+ DL+NE+  L++
Sbjct:     1 MGSLQMQTSPESDNDPRYATVTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKN 60

Query:    60 ANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEI 119
              NA + + +D + ++Y+EMES NN+LR QA ELTDRLRSLNSVL++  EISG  ++IPEI
Sbjct:    61 DNAKITEQVDEASKKYIEMESKNNVLRAQASELTDRLRSLNSVLEMVEEISGQALDIPEI 120

Query:   120 PDPLMKPWQLPCPMQPLVASADM 142
             P+ +  PWQ+PCPMQP+ ASADM
Sbjct:   121 PESMQNPWQMPCPMQPIRASADM 143

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:2000693 "positive regulation of seed maturation" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|Q08418 lip19 "Basic/leucine zipper protein" [Oryza sativa (taxid:4530)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 64/142 (45%), Positives = 96/142 (67%)

Query:     1 MASIQRQGSSG-SDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLES 59
             M+S  R+ SS  S++       DERKRKRM+SNRESARRSR +KQ+++E+L+ E   L++
Sbjct:     1 MSSPSRRSSSPESNTSGGGGGADERKRKRMLSNRESARRSRARKQQRLEELIAEAARLQA 60

Query:    60 ANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEI 119
              NA ++  I +      +++  N +LR +  EL  RL++L SVL+I  +++G  V+IPEI
Sbjct:    61 ENARVEAQIGAYAGELSKVDGENAVLRARHGELAGRLQALGSVLEI-LQVAGAPVDIPEI 119

Query:   120 PD-PLMKPWQLPCPMQPLVASA 140
             PD PL++PWQ P   QP+VA+A
Sbjct:   120 PDDPLLRPWQPPFAAQPIVATA 141

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2018411 bZIP44 "AT1G75390" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 65/154 (42%), Positives = 93/154 (60%)

Query:     2 ASIQRQG--SSGSDSDPRYAN-VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLE 58
             +S+   G  +SGS+SD R  + +DERKRKR  SNRESARRSRM+KQK ++DL  ++ HL 
Sbjct:    16 SSVSTTGLANSGSESDLRQRDLIDERKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLR 75

Query:    59 SANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ-IWAEISGINVEIP 117
               NA +   I  + Q YV +E+ N+ILR Q +EL  RL+SLN ++  + +  SG  +E  
Sbjct:    76 KENAQIVAGIAVTTQHYVTIEAENDILRAQVLELNHRLQSLNEIVDFVESSSSGFGMETG 135

Query:   118 E------IPDPLMKPWQLPCPMQPLVASADMLQD 145
             +      + D +M P  L    QP++ASA    D
Sbjct:   136 QGLFDGGLFDGVMNPMNLGFYNQPIMASASTAGD 169

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009845 "seed germination" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2139584 GBF6 "AT4G34590" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 46/98 (46%), Positives = 70/98 (71%)

Query:     7 QGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQ 66
             Q SSGS+     + +++RKRKRM+SNRESARRSRMKKQK ++DL  ++NHL+  N  +  
Sbjct:    14 QTSSGSEE----SLMEQRKRKRMLSNRESARRSRMKKQKLLDDLTAQVNHLKKENTEIVT 69

Query:    67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ 104
             ++  + Q Y+ +E+ N++LR Q  EL  RL+SLN +++
Sbjct:    70 SVSITTQHYLTVEAENSVLRAQLDELNHRLQSLNDIIE 107

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0080149 "sucrose induced translational repression" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=IEP

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 47/118 (39%), Positives = 76/118 (64%)

Query:     2 ASIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESAN 61
             +S    G + + SD     VDERKRKRM+SNRESARRSRM+KQK ++DL  +IN L + N
Sbjct:    10 SSSSSDGGNNNPSDS-VVTVDERKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDN 68

Query:    62 AMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEI 119
               +  ++  + Q Y+++++ N++L  Q  EL+ RL+SLN ++ +  + +G    + +I
Sbjct:    69 RQILNSLTVTSQLYMKIQAENSVLTAQMEELSTRLQSLNEIVDL-VQSNGAGFGVDQI 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2157999 bZIP1 "AT5G49450" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 53/151 (35%), Positives = 80/151 (52%)

Query:     1 MASIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESA 60
             MA+ ++  SSGSD       +DE+KRKR +SNRESARRSR+KKQK MED ++EI+ LE  
Sbjct:     1 MANAEKT-SSGSD-------IDEKKRKRKLSNRESARRSRLKKQKLMEDTIHEISSLERR 52

Query:    61 NAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL---QIWAEISG------ 111
                  +   +  QR   +E+ N  LR + + L+  +  L +++    +    SG      
Sbjct:    53 IKENSERCRAVKQRLDSVETENAGLRSEKIWLSSYVSDLENMIATTSLTLTQSGGGDCVD 112

Query:   112 ---INVEIPEIPDPLMKPWQLPC-PMQPLVA 138
                 N  I  + D    PW+L C  +QP+ +
Sbjct:   113 DQNANAGIA-VGDCRRTPWKLSCGSLQPMAS 142

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0009901 "anther dehiscence" evidence=IMP

GO:0009617 "response to bacterium" evidence=IEP

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2202852 bZIP4 "AT1G59530" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 39/101 (38%), Positives = 57/101 (56%)

Query:     1 MASIQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESA 60
             +A +Q   S           VD++KR+R ISNRESA+RSRMKK+K+ E+L  E+N L   
Sbjct:    27 LAFLQSDESDNPSGINEVVPVDDKKRRRTISNRESAKRSRMKKKKRFEELTEEVNRLNIR 86

Query:    61 NAMLKQNIDSSVQ--RYVEMESANNILRVQAMELTDRLRSL 99
             N  LK  + + V    ++  E  NN L+ +++ L  RL  L
Sbjct:    87 NQELKNRLANVVSCGNFISRE--NNRLKTESVCLEIRLLEL 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2097315 bZIP5 "AT3G49760" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 37/93 (39%), Positives = 55/93 (59%)

Query:    11 GSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70
             GSD  P   N DERK+KR +SNRESA+RSR KKQK +E++  ++N L+  N  LK  +  
Sbjct:    60 GSDMSPT-DNTDERKKKRKLSNRESAKRSREKKQKHLEEMSIQLNQLKIQNQELKNQLRY 118

Query:    71 SVQRYVEMESANNILRVQAMELTDRLRSLNSVL 103
              +      +  N+ L ++   L D+L ++  VL
Sbjct:   119 VLYHCQRTKMENDRLLMEHRILHDKLLNIRQVL 151

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/106 (33%), Positives = 63/106 (59%)

Query:     1 MASIQRQGSSGSDSDPRYANV-DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLES 59
             M+ I    S+  +++  +  + +ERK+KR ISNRESARRSRM+KQ+Q+++L +++  L  
Sbjct:    48 MSLISSNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRD 107

Query:    60 ANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 105
              N  L + ++  ++   ++   N    VQ  E T  L+ + S +Q+
Sbjct:   108 ENHQLLRKLNCVLESQEKVIEEN----VQLKEETTELKQMISDMQL 149

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2827461 bZIP48 "AT2G04038" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 38/100 (38%), Positives = 57/100 (57%)

Query:     4 IQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAM 63
             I    +S  D       +DERK++RM+SNRESARRSRM+KQ+ +++L +++  L + N  
Sbjct:    54 ISNNSTSDEDHHQSIMVLDERKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNC 113

Query:    64 L--KQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS 101
             L  K N  S  Q  V  E  N+ L+ +A +L   +  L S
Sbjct:   114 LIDKLNRVSETQNCVLKE--NSKLKEEASDLRQLVCELKS 151

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II1803 hypothetical protein (144 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
smart00338	65	smart00338, BRLZ, basic region leucin zipper	4e-12
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	9e-07
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	5e-06

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 57.2 bits (139), Expect = 4e-12
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 22 DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESA 81
          DE++R+R   NRE+ARRSR +K+ ++E+L  ++  LE+ N  LK+ I+   +   +++S 
Sbjct: 3  DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 82 NN 83
            
Sbjct: 63 LE 64

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 43.5 bits (103), Expect = 9e-07
 Identities = 18/59 (30%), Positives = 37/59 (62%)

Query: 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESAN 82
          ++ +R   NRE+ARRSR++K+  +E+L  ++  LE+ N  L+  ++   +   +++S N
Sbjct: 5  KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLKSEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 22 DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70
          D+  R R   N E+ARRSR KK+++ E+L   +  LE  NA L+Q ++ 
Sbjct: 2  DDEYRDRRRRNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQ 50

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
smart00338	65	BRLZ basic region leucin zipper.	99.49
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.43
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.38
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.3
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.22
KOG3584	348	consensus cAMP response element binding protein an	99.21
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.77
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.01
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.85
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.79
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.67
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.18
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.98
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	96.74
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	96.67
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.55
PRK15422	79	septal ring assembly protein ZapB; Provisional	96.54
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.38
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.38
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.23
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.15
PRK13169	110	DNA replication intiation control protein YabA; Re	96.14
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.7
COG4467	114	Regulator of replication initiation timing [Replic	95.67
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	95.61
PRK10884	206	SH3 domain-containing protein; Provisional	95.53
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.53
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.48
PRK13169	110	DNA replication intiation control protein YabA; Re	95.45
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.13
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.38
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	94.29
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.9
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	93.74
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.7
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	93.43
PRK10884	206	SH3 domain-containing protein; Provisional	93.24
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	93.21
PRK11637	428	AmiB activator; Provisional	92.91
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	92.85
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.75
KOG3119	269	consensus Basic region leucine zipper transcriptio	92.68
PRK04406	75	hypothetical protein; Provisional	92.62
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	92.07
PRK02119	73	hypothetical protein; Provisional	91.5
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	91.5
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.4
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.39
smart00338	65	BRLZ basic region leucin zipper.	91.26
PRK04325	74	hypothetical protein; Provisional	91.19
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.93
COG4467	114	Regulator of replication initiation timing [Replic	90.87
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	90.74
PRK00846	77	hypothetical protein; Provisional	90.68
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	90.67
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.37
PRK02793	72	phi X174 lysis protein; Provisional	90.28
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	90.26
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	90.19
PRK09039	343	hypothetical protein; Validated	90.11
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.1
PRK11637	428	AmiB activator; Provisional	89.89
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	89.78
PRK00295	68	hypothetical protein; Provisional	89.75
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	89.53
PF07334	76	IFP_35_N: Interferon-induced 35 kDa protein (IFP 3	89.5
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	89.25
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.07
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.06
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	88.93
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	88.87
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	88.76
PRK02119	73	hypothetical protein; Provisional	88.32
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.24
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.06
COG4942	420	Membrane-bound metallopeptidase [Cell division and	87.98
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	87.96
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.68
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	87.57
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	87.53
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	87.53
PF15294	278	Leu_zip: Leucine zipper	87.37
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	87.31
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	87.09
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	87.07
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.96
KOG4571	294	consensus Activating transcription factor 4 [Trans	86.96
PRK00888	105	ftsB cell division protein FtsB; Reviewed	86.56
PRK13922	276	rod shape-determining protein MreC; Provisional	86.55
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	86.15
PRK09039	343	hypothetical protein; Validated	86.12
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	85.85
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	85.68
PRK00888	105	ftsB cell division protein FtsB; Reviewed	85.55
PRK00736	68	hypothetical protein; Provisional	85.46
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	85.42
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	85.32
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.13
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	85.12
PF07412	200	Geminin: Geminin; InterPro: IPR022786 This family	85.04
PRK02793	72	phi X174 lysis protein; Provisional	84.99
smart00340	44	HALZ homeobox associated leucin zipper.	84.95
PF14662	193	CCDC155: Coiled-coil region of CCDC155	84.93
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	84.69
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	84.41
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	84.31
PF10482	120	CtIP_N: Tumour-suppressor protein CtIP N-terminal	84.04
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	83.99
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	83.67
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	83.35
KOG4797	123	consensus Transcriptional regulator [Transcription	83.19
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	83.07
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	82.9
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	82.86
PRK00295	68	hypothetical protein; Provisional	82.82
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	82.73
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	82.59
KOG1962	216	consensus B-cell receptor-associated protein and r	82.51
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.04
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	81.79
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	81.52
PRK04406	75	hypothetical protein; Provisional	81.49
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	81.48
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	81.2
COG4026	290	Uncharacterized protein containing TOPRIM domain,	81.02
PRK04325	74	hypothetical protein; Provisional	80.89
KOG1103	561	consensus Predicted coiled-coil protein [Function	80.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	80.41
KOG1962	216	consensus B-cell receptor-associated protein and r	80.29
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.13
COG4942	420	Membrane-bound metallopeptidase [Cell division and	80.09
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	80.08

>smart00338 BRLZ basic region leucin zipper

Probab=99.49  E-value=3.5e-13  Score=89.52  Aligned_cols=62  Identities=35%  Similarity=0.553  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           21 VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESAN   82 (145)
Q Consensus        21 ~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN   82 (145)
                      .|+|+.+|+++||+||++||.||+.|+++|+.+|..|+.+|..|..++..+...+..+..+|
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47799999999999999999999999999999999999999999998887665555554443

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.43  E-value=1.3e-12  Score=86.60  Aligned_cols=61  Identities=33%  Similarity=0.561  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           22 DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESAN   82 (145)
Q Consensus        22 deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN   82 (145)
                      +.++.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|...+..|..+|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4568899999999999999999999999999999999999999999999888888888877

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.38  E-value=1.5e-11  Score=101.09  Aligned_cols=85  Identities=25%  Similarity=0.316  Sum_probs=79.9

Q ss_pred             CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           19 ANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS   98 (145)
Q Consensus        19 ~~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~   98 (145)
                      .++|||-.||+++||.+|+-+|.|||+++.++|.+|.+|..||+.|..++..|+...+.|.++|..|+.+++.++..|-.
T Consensus        64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~  143 (292)
T KOG4005|consen   64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE  143 (292)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            46788889999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHHHH
Q 032187           99 LNSVL  103 (145)
Q Consensus        99 l~~i~  103 (145)
                      +++.-
T Consensus       144 ~~~~~  148 (292)
T KOG4005|consen  144 LKQQQ  148 (292)
T ss_pred             hHHHH
Confidence            77543

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.30  E-value=9.7e-12  Score=111.27  Aligned_cols=66  Identities=36%  Similarity=0.441  Sum_probs=62.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA   89 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~   89 (145)
                      |+..|||+|||||..||+|||+|+..||..+..|..||+.|+.++..|++++..++.||.+|+.--
T Consensus       281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvps  346 (655)
T KOG4343|consen  281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPS  346 (655)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCC
Confidence            577799999999999999999999999999999999999999999999999999999999997543

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.22  E-value=1e-10  Score=75.41  Aligned_cols=51  Identities=39%  Similarity=0.598  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           21 VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        21 ~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~   72 (145)
                      .|+++.||. +||+||++||.||+.++.+|+.+|..|+.+|..|..++..|.
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~   52 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLE   52 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367788888 999999999999999999999999999999999998888765

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.21  E-value=4.1e-11  Score=100.80  Aligned_cols=54  Identities=30%  Similarity=0.472  Sum_probs=50.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVE   77 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~   77 (145)
                      ||.-|+++|||+||.||+|||+|+..||.+|+.|+.+|..|.+++..|++.|..
T Consensus       291 KRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~  344 (348)
T KOG3584|consen  291 KREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH  344 (348)
T ss_pred             HHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence            456689999999999999999999999999999999999999999999988864

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.77  E-value=1.1e-08  Score=90.35  Aligned_cols=65  Identities=26%  Similarity=0.418  Sum_probs=56.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           25 KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL   96 (145)
Q Consensus        25 r~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl   96 (145)
                      |-||+|+|.+||+.||+|||.|++.||.+|.....||+.|..++..       ++.+|..|-+++..|...+
T Consensus       252 rvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v  316 (472)
T KOG0709|consen  252 RVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLV  316 (472)
T ss_pred             HHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999887764       6778888888877776544

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.01  E-value=5.3e-08  Score=68.99  Aligned_cols=49  Identities=31%  Similarity=0.472  Sum_probs=40.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~   72 (145)
                      |..||..+||.+|+.||.||..++.+|+.++..|..+...|..++..+.
T Consensus        30 K~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~   78 (92)
T PF03131_consen   30 KQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELR   78 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999887776666655555443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.85  E-value=6.1e-05  Score=62.92  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=37.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS   70 (145)
Q Consensus        28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~   70 (145)
                      ..+.||++|.+||.||.+|+..||.+|..|..+|..|...+..
T Consensus       210 krlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~  252 (279)
T KOG0837|consen  210 KRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK  252 (279)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence            3679999999999999999999999999999888887665553

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.79  E-value=0.00067  Score=51.46  Aligned_cols=82  Identities=22%  Similarity=0.321  Sum_probs=58.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      |.+||-++||--|.-||-|.-..-.+||.+-..|.++...              |..||+.++.++..+..++..|....
T Consensus        53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~--------------L~~e~s~~~~E~da~k~k~e~l~~~~  118 (135)
T KOG4196|consen   53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEK--------------LKEENSRLRRELDAYKSKYEALQNSA  118 (135)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4557899999999999999999988888877766555444              45678888888888888888765432


Q ss_pred             HHHHhhcCCCcCCCCCCCcC
Q 032187          104 QIWAEISGINVEIPEIPDPL  123 (145)
Q Consensus       104 ~~~~~~~g~~~~~~~~~d~~  123 (145)
                      -.    .|..-+.|..|.++
T Consensus       119 ~~----~~~~~~~pS~p~~~  134 (135)
T KOG4196|consen  119 VS----VGASPVSPSSPEFA  134 (135)
T ss_pred             hh----ccCCCCCCcccccc
Confidence            11    23344556555544

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.67  E-value=0.00051  Score=58.17  Aligned_cols=49  Identities=35%  Similarity=0.460  Sum_probs=37.7

Q ss_pred             hHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           21 VDERKRKR-MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID   69 (145)
Q Consensus        21 ~deRr~rR-~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~   69 (145)
                      .++++.+| .+.|..+|-|.|.||++..+.|+.++..|+..|.+|+.++.
T Consensus       223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~  272 (294)
T KOG4571|consen  223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQAS  272 (294)
T ss_pred             CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34554444 55777779999999999999999998887777777666555

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.18  E-value=0.0028  Score=52.88  Aligned_cols=60  Identities=27%  Similarity=0.454  Sum_probs=42.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      ..|..+|=++||+||.+.+...++...+|..|+.||..|                     |.++..|+..|..|.+++..
T Consensus       196 ~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~l---------------------r~~v~~l~~el~~~~~~~~~  254 (269)
T KOG3119|consen  196 KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEAL---------------------RTQVEQLKKELATLRRLFLQ  254 (269)
T ss_pred             HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHh
Confidence            345568889999999999998877777777666555555                     44555666666666666644


Q ss_pred             H
Q 032187          106 W  106 (145)
Q Consensus       106 ~  106 (145)
                      .
T Consensus       255 ~  255 (269)
T KOG3119|consen  255 L  255 (269)
T ss_pred             h
Confidence            3

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.98  E-value=0.014  Score=39.90  Aligned_cols=54  Identities=28%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEI-------NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        47 l~eLe~~v-------~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      ++.||.+|       ..|+.+|..|+.++..+.+....|..||..|+.+-.....||.+|-
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL   66 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555554       5566666666666666666677777777777777777777777653

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.74  E-value=0.018  Score=39.71  Aligned_cols=54  Identities=26%  Similarity=0.345  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      +.=|.-+|..|...|..|..+...+......++.||..|+.+-....+||++|-
T Consensus        20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL   73 (79)
T COG3074          20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556788889999999999988889999999999999999999999999863

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=96.67  E-value=0.0092  Score=37.37  Aligned_cols=42  Identities=31%  Similarity=0.449  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           56 HLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR   97 (145)
Q Consensus        56 ~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~   97 (145)
                      +|+.+-..|+.....|...+..|..||..|++++..|+..++
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            577778888888888888888999999999999988888764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.55  E-value=0.024  Score=41.47  Aligned_cols=53  Identities=23%  Similarity=0.410  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      +|-.++..|+.....|..++..|+..+..+..||..|+-+...|+.+|..+..
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45567777777777788888888888888889999999999999988887755

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=96.54  E-value=0.027  Score=39.31  Aligned_cols=52  Identities=31%  Similarity=0.369  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      =|.-+|..|+.+|..|..++..+......+..||..|+.+.....+||++|-
T Consensus        22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL   73 (79)
T PRK15422         22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777777777777777777777899999999999999999998864

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.38  E-value=0.075  Score=35.83  Aligned_cols=55  Identities=11%  Similarity=0.096  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      +..|+.+|..|=..-.+|+.++..|.+....+..|+..|......-+.|+..+-+
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~   56 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT   56 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566655555555555555555556666666777776666666666665533

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.38  E-value=0.055  Score=36.49  Aligned_cols=56  Identities=21%  Similarity=0.339  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      ..++.|-.....|+.||..|+.++..+...-..+..-|..=+.+++.+-.||.+|.
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le   62 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            46788888888888899999888888888888888888888888888888888764

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.23  E-value=0.16  Score=34.72  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           54 INHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        54 v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      ...|+...+.+...|..|...+..+..+|..|..+..+|......|
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L   51 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL   51 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666666555555555555444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.15  E-value=0.016  Score=53.46  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=38.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           27 KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID   69 (145)
Q Consensus        27 rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~   69 (145)
                      ||.=+||.||+++|+||-.-|..||..|..|+.+-.+|..+-.
T Consensus       493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~  535 (604)
T KOG3863|consen  493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD  535 (604)
T ss_pred             ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999998888776544

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.14  E-value=0.054  Score=39.94  Aligned_cols=51  Identities=22%  Similarity=0.423  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      +|=.++..|+.....+..++..|+..+..+..||..|+.+...|+.+|..+
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455667777777777777777777788888888888888888888888866

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.70  E-value=0.088  Score=38.52  Aligned_cols=50  Identities=18%  Similarity=0.304  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD   94 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~   94 (145)
                      ..+..|+.++..|-.+...|+..+..+.+.-..|..||..||..+.++..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999999999999999999999998865

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=95.67  E-value=0.088  Score=38.95  Aligned_cols=49  Identities=20%  Similarity=0.358  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS   98 (145)
Q Consensus        50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~   98 (145)
                      +=.+|..|+.....+..+++.+++.+..+..||..|+-+...|++||-.
T Consensus         6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            3456777777778888888899999999999999999999999999976

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=95.61  E-value=0.27  Score=33.78  Aligned_cols=61  Identities=23%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQRYV--------EMESANNILRVQAMELTDRLRSLNSVLQIWA  107 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~--------~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~  107 (145)
                      +.+.+..++.|+.||=.|+-+|-.+.+.+.        .+..+|-.|+.++..|+..++.+...+..+.
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~   70 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE   70 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999887776        4577999999999999999998887776553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.53  E-value=0.23  Score=40.16  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      ++....+.+..|..||..|+.++..+..++..|.
T Consensus       126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~  159 (206)
T PRK10884        126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN  159 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444455555555555555555554443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.53  E-value=0.24  Score=33.57  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      +.+++.++.+++..+.+|..|..+.......+...-.+|..|++++..|...|...
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778888888888888888888887777777777778888888888887776543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.48  E-value=0.17  Score=40.79  Aligned_cols=62  Identities=23%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE  108 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~  108 (145)
                      ..+|-..|..|+.-|..|..++..+...+..++..|+.|..++..|+..++++...++..+.
T Consensus         3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~   64 (193)
T PF14662_consen    3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKA   64 (193)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999887777543

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=95.45  E-value=0.12  Score=38.10  Aligned_cols=49  Identities=20%  Similarity=0.298  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT   93 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~   93 (145)
                      ..+..|+.++..+-.+...|+..+..+.+.-..|..||..||..+.++.
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~   56 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE   56 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4678899999999999999999999999999999999999999999873

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.13  E-value=0.25  Score=38.74  Aligned_cols=63  Identities=19%  Similarity=0.236  Sum_probs=53.4

Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187           46 QMEDLVN---EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAE  108 (145)
Q Consensus        46 ~l~eLe~---~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~  108 (145)
                      +|..|..   ....+..||..|..++..|..++..|+.||..|..+...+..-...|-.|++.+-.
T Consensus        88 fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk  153 (161)
T TIGR02894        88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK  153 (161)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444443   57788899999999999999999999999999999999999999999888877543

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.38  E-value=1.7  Score=40.03  Aligned_cols=81  Identities=19%  Similarity=0.274  Sum_probs=65.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      +..+.+-..........-+.+++.|+..+...+.++..|..+...+......+..|+..|..+..+++.++..|.+-+..
T Consensus       152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~  231 (546)
T PF07888_consen  152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT  231 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466666777777777788888888888888888888888888888888888889999999888888888888766554


Q ss_pred             H
Q 032187          106 W  106 (145)
Q Consensus       106 ~  106 (145)
                      +
T Consensus       232 l  232 (546)
T PF07888_consen  232 L  232 (546)
T ss_pred             H
Confidence            3

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=94.29  E-value=0.18  Score=45.48  Aligned_cols=49  Identities=14%  Similarity=0.188  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL   92 (145)
Q Consensus        44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L   92 (145)
                      +....+||.+++.|+.|.+.+......+.+++..++.||..|+.++..+
T Consensus        75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~  123 (475)
T PRK13729         75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL  123 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4578999999999999999999999999999999999999999998433

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.90  E-value=0.45  Score=41.59  Aligned_cols=63  Identities=25%  Similarity=0.277  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           39 SRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        39 SR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      -=+|-+.+.+.||.-+.+++.||+.|.-+++.+.+.+...+.|+..|..++.|-.+..+.|++
T Consensus       121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~  183 (401)
T PF06785_consen  121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND  183 (401)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677888889999999999999999999999999999999998887777665555555543

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=93.74  E-value=1.5  Score=36.89  Aligned_cols=53  Identities=17%  Similarity=0.149  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      +.+.++.+...|..++..|.-..+.|...|..|-++-.+|..+|.-++.-+..
T Consensus        91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~  143 (292)
T KOG4005|consen   91 RMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE  143 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            33444444444444444444444444444444444444555555554444433

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.70  E-value=2.2  Score=31.98  Aligned_cols=79  Identities=18%  Similarity=0.276  Sum_probs=53.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           27 KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        27 rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      .|=...||..-....++..-++.|+..+..|+..+..+..++..+......+..++..+...+..+.+.++.+...+..
T Consensus        48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~  126 (151)
T PF11559_consen   48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ  126 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666777777777777777777777777777777777777777777777666666666666666666655544443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=93.43  E-value=0.43  Score=29.78  Aligned_cols=41  Identities=17%  Similarity=0.313  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      +|......|+..|..|.++|..|..+...|+..+..|...+
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45677888999999999999999999999999999887655

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.24  E-value=3.1  Score=33.61  Aligned_cols=52  Identities=8%  Similarity=0.120  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL   96 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl   96 (145)
                      ++..+|..++..+......|..++..|++++..+..||..|++++..+.+..
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444555555555555556666666666666665544

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=93.21  E-value=0.76  Score=32.13  Aligned_cols=45  Identities=24%  Similarity=0.348  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMEL   92 (145)
Q Consensus        48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L   92 (145)
                      ++|..++..|+.....|..++...+..+..|..||..|..-+..|
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555566666655555555555555554444433

The exact function is unknown.

>PRK11637 AmiB activator; Provisional

Probab=92.91  E-value=4.1  Score=35.60  Aligned_cols=80  Identities=13%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      .+...+............+..+.+++.++..+..+...+..++..+...+..+..+=..|..++..+..++......+..
T Consensus        49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~  128 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA  128 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444556666677777777777777777777777777777777777777777777777665555444

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=92.85  E-value=1  Score=34.55  Aligned_cols=53  Identities=21%  Similarity=0.298  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQR--YVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~--~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      +.+|..++..|+.++..|..++..|...  ...+..+-..|..++..|..+|..|
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l  135 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL  135 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555554444444332  1233344444444444444444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.75  E-value=2.2  Score=31.83  Aligned_cols=15  Identities=27%  Similarity=0.319  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHH
Q 032187           83 NILRVQAMELTDRLR   97 (145)
Q Consensus        83 ~~Lra~~~~L~~rl~   97 (145)
                      ..|+.++.+|..|+.
T Consensus        71 ~~L~~el~~l~~ry~   85 (120)
T PF12325_consen   71 EELEQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=92.68  E-value=1.3  Score=36.91  Aligned_cols=44  Identities=14%  Similarity=0.234  Sum_probs=24.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           31 SNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQR   74 (145)
Q Consensus        31 sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~   74 (145)
                      +-|..++.-=..-+.++.+|+.+-..|+.++.+|..++..++..
T Consensus       208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~  251 (269)
T KOG3119|consen  208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL  251 (269)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444334445556666666666666666666666655433

>PRK04406 hypothetical protein; Provisional

Probab=92.62  E-value=2  Score=29.50  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      .++.++..|+......-..|..|+.-+..-..+-..|+.++..|.++|..+
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~   58 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM   58 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444444444444444444444444445555566777777777766654

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=92.07  E-value=2.5  Score=32.42  Aligned_cols=64  Identities=25%  Similarity=0.342  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES--ANNILRVQAMELTDRLRSLNSVLQIWAE  108 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~--EN~~Lra~~~~L~~rl~~l~~i~~~~~~  108 (145)
                      ..+.+|..++..|+.+...|...+..+...+..+.+  -|..|...+.+|...+..|.+-+..+.+
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346677777888888888888887777777777766  5677888888888888877777766644

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK02119 hypothetical protein; Provisional

Probab=91.50  E-value=2.9  Score=28.43  Aligned_cols=48  Identities=19%  Similarity=0.259  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      +++.+||.+++..+.-...|...+.       .-..+-..|+.++..|..+|..+
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~-------~Qq~~id~L~~ql~~L~~rl~~~   56 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALI-------EQQFVIDKMQVQLRYMANKLKDM   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence            4556666666665555555544433       33444456666666666666554

>TIGR00219 mreC rod shape-determining protein MreC

Probab=91.50  E-value=0.61  Score=39.17  Aligned_cols=36  Identities=28%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 032187           52 NEINHLESANAMLKQNIDSSVQRYV----EMESANNILRV   87 (145)
Q Consensus        52 ~~v~~L~~eN~~L~~~~~~l~~~~~----~l~~EN~~Lra   87 (145)
                      ..+.+|..||.+|+.++..+...+.    .+..||..||+
T Consensus        66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~  105 (283)
T TIGR00219        66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE  105 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677888888888776643333    25566666555

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.40  E-value=1.8  Score=36.76  Aligned_cols=51  Identities=16%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQ-----------RYVEMESANNILRVQAMELTDRLR   97 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~-----------~~~~l~~EN~~Lra~~~~L~~rl~   97 (145)
                      |++|+.+...|+.+|+.|..++..+++           ....|+.+|+.+++....|+.+++
T Consensus        54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiR  115 (333)
T KOG1853|consen   54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIR  115 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444445555444444442           223556677777777776665544

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.39  E-value=1.7  Score=29.09  Aligned_cols=49  Identities=22%  Similarity=0.298  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      .++.+||.+++.++.-...|...+..-       ..+-..|..++..|..+|..+.
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Q-------q~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQ-------QRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence            567778888877777666666555543       3344445555555666655553

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>smart00338 BRLZ basic region leucin zipper

Probab=91.26  E-value=1.3  Score=28.90  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      .+..|...+..+..+|..|+.++..|...+..|.+.+
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338       27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455666677777888888888888887777776654

>PRK04325 hypothetical protein; Provisional

Probab=91.19  E-value=2.7  Score=28.63  Aligned_cols=47  Identities=15%  Similarity=0.217  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      ++.+||.+++.++.-...|...+.       .-..+-..|..++..|..||..+
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~-------~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVA-------RQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            366666666666665555544443       33334455666666666666554

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.93  E-value=2.9  Score=35.00  Aligned_cols=53  Identities=19%  Similarity=0.257  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL   96 (145)
Q Consensus        44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl   96 (145)
                      +..++++..+-..|..+|..|..++..++.++..++.||+.|......|-..+
T Consensus       141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev  193 (290)
T COG4026         141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV  193 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence            34466666666677777777777777777888888889998877665444333

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=90.87  E-value=1.1  Score=33.18  Aligned_cols=47  Identities=26%  Similarity=0.292  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAME   91 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~   91 (145)
                      ..++.|+.++..|-++...|++.+..+-+.-..|.-||..||..+.+
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            45789999999999999999999999999999999999999999987

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=90.74  E-value=3.8  Score=27.87  Aligned_cols=52  Identities=13%  Similarity=0.180  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           55 NHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        55 ~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      ......-......+..+...+.....+|+.|++++..|..++..|++-+..+
T Consensus        17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL   68 (70)
T PF04899_consen   17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL   68 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444555666666777777778899999999999999999998876544

>PRK00846 hypothetical protein; Provisional

Probab=90.68  E-value=3.3  Score=28.76  Aligned_cols=49  Identities=8%  Similarity=0.097  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      +++.+||.+++..+.       .+..|+.-+.....+-..|+.++..|.++|+.+.
T Consensus        13 ~Ri~~LE~rlAfQe~-------tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846         13 ARLVELETRLSFQEQ-------ALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345555555555444       4444444444455566666777777777766653

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=90.67  E-value=4.9  Score=28.99  Aligned_cols=64  Identities=17%  Similarity=0.283  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           43 KQKQMEDLVNEINHLESANAMLKQNIDSS--VQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l--~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      |+..++.|...+.........+..++..+  ...++.+..+=..++-++..+..+++.++..+..+
T Consensus        33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL   98 (106)
T PF10805_consen   33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL   98 (106)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            45566666555555555555555555555  56667777777777777778888888777766654

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.37  E-value=4.6  Score=28.23  Aligned_cols=56  Identities=14%  Similarity=0.160  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      -++.||.+|.+.-..+.-|.-++..++++-..+..|+..++..-.+|......|..
T Consensus         5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~   60 (79)
T PRK15422          5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE   60 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46778888877766666677777776666666666666655555555555554443

>PRK02793 phi X174 lysis protein; Provisional

Probab=90.28  E-value=3.4  Score=27.99  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      +++.+||.+++..+.-...|...+.       .-..+-..|..++..|..+|..+
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~-------~Qq~~I~~L~~~l~~L~~rl~~~   55 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVT-------AHEMEMAKLRDHLRLLTEKLKAS   55 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566677776666665555544443       33344455666666666666554

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=90.26  E-value=8.2  Score=36.56  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILR   86 (145)
Q Consensus        50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr   86 (145)
                      +..+..+|+.|...|+.++....+.+..++.|...||
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr  579 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELR  579 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555544444444444444443

; GO: 0016021 integral to membrane

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=90.19  E-value=5.4  Score=34.38  Aligned_cols=50  Identities=22%  Similarity=0.421  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR   97 (145)
Q Consensus        48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~   97 (145)
                      ++|...+..|+++|..|+.++...+.++..|..||..||.....+..+..
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE   72 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE   72 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778888888888888888888888888888888888887766655433

>PRK09039 hypothetical protein; Validated

Probab=90.11  E-value=8.4  Score=33.20  Aligned_cols=48  Identities=15%  Similarity=0.177  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      .+|..|+.+...|+.++..+...+..++......+.++..|..+|+.+
T Consensus       137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666666666666666666677777777777777777777776643

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.10  E-value=3.4  Score=37.50  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVE-MESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~-l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      .+..|..+-+.|..||++|+.+...+.+++.. +.++...|..+...|...++.+...+..+
T Consensus        74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752        74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666777777777777766666666543 44677777777777776666665555443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK11637 AmiB activator; Provisional

Probab=89.89  E-value=11  Score=32.92  Aligned_cols=72  Identities=10%  Similarity=0.041  Sum_probs=52.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      ..+.....+.....-...+..|+.++..+..+...+..++..+...+..+..+=..+..++..+.+.|..+-
T Consensus        59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl  130 (428)
T PRK11637         59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL  130 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555556677888888888888888888888888888888888888888888877777776543

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=89.78  E-value=5.4  Score=28.13  Aligned_cols=77  Identities=17%  Similarity=0.257  Sum_probs=41.6

Q ss_pred             HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 032187           29 MISNRESARRSRMKKQ------KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMES---ANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        29 ~~sNReSArrSR~RKq------~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~---EN~~Lra~~~~L~~rl~~l   99 (145)
                      +..|.+..+.+-.++.      ..+-+|..+...+..+...|+.+-+.++..+..+..   +-..|.+++.+|...+..+
T Consensus         7 ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l   86 (108)
T PF02403_consen    7 IRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL   86 (108)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence            3446666666655553      344445556666666666666666666555544443   3445555555555555555


Q ss_pred             HHHHHH
Q 032187          100 NSVLQI  105 (145)
Q Consensus       100 ~~i~~~  105 (145)
                      ..-+..
T Consensus        87 e~~~~~   92 (108)
T PF02403_consen   87 EEQLKE   92 (108)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK00295 hypothetical protein; Provisional

Probab=89.75  E-value=4.5  Score=27.11  Aligned_cols=48  Identities=13%  Similarity=0.178  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      +++.+||.+++.++.-...|...+..       -..+-..|+.++..|..+|..+
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~-------Qq~~I~~L~~ql~~L~~rl~~~   52 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVE-------QQRVIERLQLQMAALIKRQEEM   52 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            35788888888877766666555443       3344466667777777777665

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=89.53  E-value=2.7  Score=27.25  Aligned_cols=36  Identities=31%  Similarity=0.404  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      ..+..|...+..+..+|..|+.++..|...+..|..
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~   61 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS   61 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556666667777777777777777777766654

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []

Probab=89.50  E-value=1.6  Score=30.37  Aligned_cols=46  Identities=24%  Similarity=0.385  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCcCCCCCC
Q 032187           75 YVEMESANNILRVQAMELTDRLRSLNSVLQIWAEIS--GINVEIPEIP  120 (145)
Q Consensus        75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~--g~~~~~~~~~  120 (145)
                      ++.+..||..|+.++..|.+.|+.+..-++.-.++.  -+.|..+++|
T Consensus         2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diPe~kvkFts~E~p   49 (76)
T PF07334_consen    2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKEDIPEKKVKFTSPEVP   49 (76)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccCcCCCCCCC
Confidence            356778899999999888888888776555544432  2345555555

This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=89.25  E-value=3.9  Score=27.28  Aligned_cols=51  Identities=24%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA  107 (145)
Q Consensus        50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~  107 (145)
                      ++.++..|+.....+-..+..       |...=...-.++..|..+++.|..-+..+.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~-------Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEE-------LNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455666665555544444332       222223334456677778887777666654

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.07  E-value=7.4  Score=28.69  Aligned_cols=58  Identities=12%  Similarity=0.192  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR   97 (145)
Q Consensus        40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~   97 (145)
                      +.=.+..+..|+..+......+..|..+-..|+.....|..+|..+-..+.+|.+++.
T Consensus        11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~   68 (107)
T PF09304_consen   11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID   68 (107)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444444444444444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=89.06  E-value=7.9  Score=29.00  Aligned_cols=68  Identities=22%  Similarity=0.324  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           38 RSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        38 rSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      .+|.|-..+.+.|..++..+..++..|...+..++..+..++.+...+......+...+..+...+..
T Consensus        45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~  112 (151)
T PF11559_consen   45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ  112 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777777777777777777777777777777777777777777766666666665544433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=88.93  E-value=6.1  Score=27.57  Aligned_cols=56  Identities=20%  Similarity=0.241  Sum_probs=45.5

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVN-EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        45 ~~l~eLe~-~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      .-++.++. .-..|..+...|...+..|..++..+..||..|+.+-.-|...+..|-
T Consensus         8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm   64 (80)
T PF10224_consen    8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM   64 (80)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34454553 467788888889999999999999999999999999999988888773

The exact function is unknown.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=88.87  E-value=6.5  Score=33.52  Aligned_cols=63  Identities=22%  Similarity=0.355  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA  107 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~  107 (145)
                      ..++.+..++..|+.||..+..........+..+..|+..+..++..+..++..|..+...++
T Consensus       244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ  306 (309)
T PF09728_consen  244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ  306 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567778889999999999999999999999999999999999999999999998888877664

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=88.76  E-value=5.7  Score=26.99  Aligned_cols=61  Identities=26%  Similarity=0.318  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      |...+..|..+-..|......+...|..|+.....++.+...|+..+..+...+..|.+.+
T Consensus        10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l   70 (74)
T PF12329_consen   10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL   70 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666777777777777777777777777777777777777777777777777777666554

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PRK02119 hypothetical protein; Provisional

Probab=88.32  E-value=5.4  Score=27.11  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL---RVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L---ra~~~~L~~rl~~l~~i~~~~  106 (145)
                      +..++.++..|+.........+..|          |.++   ..++..|+.+|..|..=+..+
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~L----------N~~v~~Qq~~id~L~~ql~~L~~rl~~~   56 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEEL----------NQALIEQQFVIDKMQVQLRYMANKLKDM   56 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4557777777766655555444432          4444   334577788888776655444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.24  E-value=14  Score=30.76  Aligned_cols=51  Identities=20%  Similarity=0.306  Sum_probs=39.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           25 KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRY   75 (145)
Q Consensus        25 r~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~   75 (145)
                      -.+.+..-.+.++..=.-++..+++++.+|..++.+.+.++.++..+....
T Consensus        32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666777777777888899999999999999988888888766433

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.06  E-value=13  Score=30.24  Aligned_cols=50  Identities=12%  Similarity=0.134  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR   95 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r   95 (145)
                      .++++..+...|..+...|..++..++.....++..-..+..++.+|..+
T Consensus        43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q   92 (251)
T PF11932_consen   43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ   92 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444433333333333333333333333333333333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=87.98  E-value=9  Score=34.36  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=53.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRL----RSL   99 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl----~~l   99 (145)
                      ++++-+.++=+.-.++....++....|+.++..++.++..+..++..+......+...+..+...+..|..+-    ..|
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555566666667777777777777777777777777666666666666666666665554433    345


Q ss_pred             HHHHHHH
Q 032187          100 NSVLQIW  106 (145)
Q Consensus       100 ~~i~~~~  106 (145)
                      ..+|..+
T Consensus       118 a~~L~A~  124 (420)
T COG4942         118 AEQLAAL  124 (420)
T ss_pred             HHHHHHH
Confidence            5666555

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.96  E-value=13  Score=30.20  Aligned_cols=52  Identities=17%  Similarity=0.158  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      +|..++..|..+...|...+..+...+.....+-..|..++..+..-...|.
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~  104 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV  104 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444555555555555555555554444333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.68  E-value=7.7  Score=32.95  Aligned_cols=56  Identities=18%  Similarity=0.209  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      ..|..|..++..+..+....+..+..++.+...+..+-..+.++..++...+..+.
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555544444444444444444444444444444444444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=87.57  E-value=8.9  Score=35.46  Aligned_cols=36  Identities=28%  Similarity=0.503  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 032187           37 RRSRMKKQKQMEDLVN-------EINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        37 rrSR~RKq~~l~eLe~-------~v~~L~~eN~~L~~~~~~l~   72 (145)
                      |.+|.|-|+.|.+|-.       +|..|+.+|..|...++.++
T Consensus        34 r~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr   76 (546)
T KOG0977|consen   34 RDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLR   76 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577778888877765       78899999999999999877

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=87.53  E-value=0.89  Score=30.11  Aligned_cols=28  Identities=29%  Similarity=0.448  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           61 NAMLKQNIDSSVQRYVEMESANNILRVQ   88 (145)
Q Consensus        61 N~~L~~~~~~l~~~~~~l~~EN~~Lra~   88 (145)
                      ...|+.+|..|..+...++.||..||..
T Consensus        16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   16 VEVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445555555555555666777776654

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=87.53  E-value=7.1  Score=27.01  Aligned_cols=64  Identities=17%  Similarity=0.363  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCCCC
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEISGINVEIPEIPD  121 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~g~~~~~~~~~d  121 (145)
                      -+..+..||..|+.....+...+...           ..|...+..+..+|..++.-+..+.+.=.... +|++||
T Consensus        12 dIk~vd~KVdaLq~~V~~l~~~~~~v-----------~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~~-~p~~p~   75 (75)
T PF05531_consen   12 DIKAVDDKVDALQTQVDDLESNLPDV-----------TELNKKLDAQSAQLTTLNTKVNEIQDILNPDI-VPDVPD   75 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-CCCCCC
Confidence            34555566666555554444433321           22344445555566666655555544412122 677664

; GO: 0019028 viral capsid

>PF15294 Leu_zip: Leucine zipper

Probab=87.37  E-value=3  Score=35.39  Aligned_cols=45  Identities=29%  Similarity=0.346  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD   94 (145)
Q Consensus        50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~   94 (145)
                      |..++..|+.||..|+.++..+..++.....|+..|..++.+|+.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677899999999999999999999999999999999988888887

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=87.31  E-value=2.5  Score=27.26  Aligned_cols=50  Identities=18%  Similarity=0.260  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD   94 (145)
Q Consensus        42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~   94 (145)
                      |+..+|.+|+.++..=+   +.=...-......+..++.||..|++++.-++.
T Consensus         1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46677888887765432   122222345667788899999999999886654

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.09  E-value=11  Score=28.53  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~   72 (145)
                      ++.++.++..|+.++..+-.+|..|.
T Consensus        16 ~e~~e~~~K~le~~~~~~E~EI~sL~   41 (143)
T PF12718_consen   16 AEELEAKVKQLEQENEQKEQEITSLQ   41 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.07  E-value=12  Score=31.61  Aligned_cols=63  Identities=13%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 032187           43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM-------ELTDRLRSLNSVLQI  105 (145)
Q Consensus        43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~-------~L~~rl~~l~~i~~~  105 (145)
                      +...+.+++..+..++.+...|..++..+..+...+..++..+.+++.       ++..++...+.+|..
T Consensus        36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~  105 (265)
T COG3883          36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK  105 (265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666666666666665555555554       444445444444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.96  E-value=5.5  Score=36.81  Aligned_cols=62  Identities=19%  Similarity=0.341  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           34 ESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDR   95 (145)
Q Consensus        34 eSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~r   95 (145)
                      +.|-+.+..=...+.++...+..++.+...++..+..+......|..||..|+.++..++..
T Consensus       130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~  191 (546)
T KOG0977|consen  130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ  191 (546)
T ss_pred             HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            33444444445566667777788888888888888888888888888888888888776653

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=86.96  E-value=7.9  Score=33.15  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           64 LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      =+.+-+.+...+..|+..|..||.++.+|...++.|..+|-.+
T Consensus       246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~  288 (294)
T KOG4571|consen  246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV  288 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556667788999999999999999999999999887654

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=86.56  E-value=3.9  Score=29.58  Aligned_cols=39  Identities=10%  Similarity=0.212  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           63 MLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        63 ~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      .+..++..++++...+..+|..|+.++..|.+-...+.+
T Consensus        31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe   69 (105)
T PRK00888         31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEE   69 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHH
Confidence            344444444444445556666666666666654334433

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=86.55  E-value=2.9  Score=34.34  Aligned_cols=10  Identities=40%  Similarity=0.634  Sum_probs=4.1

Q ss_pred             HHHHHHHHHH
Q 032187           77 EMESANNILR   86 (145)
Q Consensus        77 ~l~~EN~~Lr   86 (145)
                      .+..||..|+
T Consensus        97 ~l~~en~~L~  106 (276)
T PRK13922         97 QLEAENARLR  106 (276)
T ss_pred             HHHHHHHHHH
Confidence            3344444433

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=86.15  E-value=4.3  Score=35.68  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILR   86 (145)
Q Consensus        52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr   86 (145)
                      .+...|+.||..|+.+++.|+.+...|  ||..|+
T Consensus        32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~   64 (420)
T PF07407_consen   32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLR   64 (420)
T ss_pred             hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence            367789999999999999999888888  777776

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PRK09039 hypothetical protein; Validated

Probab=86.12  E-value=6.4  Score=33.92  Aligned_cols=7  Identities=14%  Similarity=0.434  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q 032187           93 TDRLRSL   99 (145)
Q Consensus        93 ~~rl~~l   99 (145)
                      ..++..|
T Consensus       171 ~~~i~~L  177 (343)
T PRK09039        171 QAKIADL  177 (343)
T ss_pred             HHHHHHH
Confidence            3344433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=85.85  E-value=6  Score=39.19  Aligned_cols=73  Identities=27%  Similarity=0.312  Sum_probs=54.0

Q ss_pred             HHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 032187           30 ISNRESARRSRMK------------KQKQMEDLVNEINHLESANAMLKQNIDSSVQ---RYVEMESANNILRVQAMELTD   94 (145)
Q Consensus        30 ~sNReSArrSR~R------------Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~---~~~~l~~EN~~Lra~~~~L~~   94 (145)
                      .-+|..|...-.+            +.+++++|+..+..|+.||..|..+|..|..   ....++..|..+-..-.++..
T Consensus       503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk  582 (1195)
T KOG4643|consen  503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKK  582 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHH
Confidence            3455566655443            4478999999999999999999999998875   455667777777777667776


Q ss_pred             HHHHHHHH
Q 032187           95 RLRSLNSV  102 (145)
Q Consensus        95 rl~~l~~i  102 (145)
                      -+..|+.+
T Consensus       583 ~idaL~al  590 (1195)
T KOG4643|consen  583 YIDALNAL  590 (1195)
T ss_pred             HHHHHHHH
Confidence            66666643

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=85.68  E-value=7.8  Score=25.31  Aligned_cols=33  Identities=9%  Similarity=0.215  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           75 YVEMESANNILRVQAMELTDRLRSLNSVLQIWA  107 (145)
Q Consensus        75 ~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~  107 (145)
                      +..+..||..|+..+..+.+-++.|-++...+.
T Consensus        16 i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs   48 (55)
T PF05377_consen   16 INTVKKENEEISESVEKIEENVKDLLSLYEVVS   48 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678899999999999999988888887763

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=85.55  E-value=3.8  Score=29.62  Aligned_cols=34  Identities=12%  Similarity=0.118  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           68 IDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        68 ~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      ...+.+++..+..||..|+++...|..++..|++
T Consensus        29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3344445555555555555555555555555543

>PRK00736 hypothetical protein; Provisional

Probab=85.46  E-value=8.7  Score=25.68  Aligned_cols=48  Identities=19%  Similarity=0.228  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      .++.+||.+++.++.-...|...+..       -..+-..|..++..|..||..+
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~-------Qq~~i~~L~~ql~~L~~rl~~~   52 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAE-------QWKTVEQMRKKLDALTERFLSL   52 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            45888888888887766666555443       2233355556666666666543

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.42  E-value=12  Score=31.63  Aligned_cols=45  Identities=22%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM   90 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~   90 (145)
                      .++.|-.+|..+......+..++..+...+..+..+=..|+..+.
T Consensus        53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~   97 (265)
T COG3883          53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV   97 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=85.32  E-value=9.1  Score=25.79  Aligned_cols=41  Identities=15%  Similarity=0.039  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAM   90 (145)
Q Consensus        50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~   90 (145)
                      |+..+..|+..+..+..++.........|..|+...-.++.
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~   43 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLG   43 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444443333444444433333333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.13  E-value=15  Score=31.10  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT   93 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~   93 (145)
                      +.|.++..++...+.+...+..++..+...+..+..+-..|.+++.++.
T Consensus       216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555555555555555555555554444

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=85.12  E-value=8.9  Score=27.15  Aligned_cols=40  Identities=25%  Similarity=0.251  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 032187           55 NHLESANAMLKQNIDSSVQR------YVEMESANNILRVQAMELTD   94 (145)
Q Consensus        55 ~~L~~eN~~L~~~~~~l~~~------~~~l~~EN~~Lra~~~~L~~   94 (145)
                      ..+..+|..|..+|..|..+      ......||-.|+.++..|+.
T Consensus        20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~   65 (86)
T PF12711_consen   20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS   65 (86)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666644      44667899988888876654

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long)

Probab=85.04  E-value=2.4  Score=34.38  Aligned_cols=45  Identities=20%  Similarity=0.358  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      -.||..|...|..+...+..+..||..|+    +|..++++|.+||..+
T Consensus       124 L~ENe~Lh~~ie~~~eEi~~lk~en~~L~----elae~~~~la~~ie~l  168 (200)
T PF07412_consen  124 LEENEKLHKEIEQKDEEIAKLKEENEELK----ELAEHVQYLAEVIERL  168 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            35777788887777777777777776665    4777888888888665

Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.

>PRK02793 phi X174 lysis protein; Provisional

Probab=84.99  E-value=8.9  Score=25.93  Aligned_cols=51  Identities=24%  Similarity=0.253  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      +++.++..|+.........+..|       ...=.....++..|..+++.|.+=+..+
T Consensus         5 ~~e~Ri~~LE~~lafQe~tIe~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~~   55 (72)
T PRK02793          5 SLEARLAELESRLAFQEITIEEL-------NVTVTAHEMEMAKLRDHLRLLTEKLKAS   55 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46667777666555554444432       2222222344577888888777655554

>smart00340 HALZ homeobox associated leucin zipper

Probab=84.95  E-value=2.5  Score=26.36  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           69 DSSVQRYVEMESANNILRVQAMELTD   94 (145)
Q Consensus        69 ~~l~~~~~~l~~EN~~Lra~~~~L~~   94 (145)
                      +.|+.-+..|..||..|..++.+|+.
T Consensus         8 e~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        8 ELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677788899999999999988874

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=84.93  E-value=9.9  Score=30.73  Aligned_cols=41  Identities=29%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA   89 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~   89 (145)
                      .|..++..|+.+|..|..+...+..++..|..+|..|.-++
T Consensus        99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            34455555555555555555555555555555555555555

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=84.69  E-value=0.23  Score=43.55  Aligned_cols=47  Identities=34%  Similarity=0.423  Sum_probs=41.0

Q ss_pred             CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           19 ANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLK   65 (145)
Q Consensus        19 ~~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~   65 (145)
                      ...|+++++=.++||.+|-++|.||+.....|+.+...+..+|..|.
T Consensus       280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            45577775558899999999999999999999999999888888876

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=84.41  E-value=9.7  Score=36.59  Aligned_cols=65  Identities=23%  Similarity=0.325  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      .||...+..|..++..+..++..++..|..+...+...+.++..|.+.+..|+.+|..-+..+..
T Consensus       297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~k  361 (775)
T PF10174_consen  297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEK  361 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            35666777788888888888888888888888888888888888888888888888776665554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=84.31  E-value=0.041  Score=48.18  Aligned_cols=67  Identities=21%  Similarity=0.238  Sum_probs=52.1

Q ss_pred             CChHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           19 ANVDERKRKRMISNRESARR---SRMKKQKQMEDLVNEINHLE-SANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD   94 (145)
Q Consensus        19 ~~~deRr~rR~~sNReSArr---SR~RKq~~l~eLe~~v~~L~-~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~   94 (145)
                      ...++++..|+..|+.+|.+   +|.+++.+...|..+|..|+ .++..                     |..++..|..
T Consensus       149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~---------------------l~~~is~Lqn  207 (395)
T KOG1414|consen  149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSP---------------------LSPQISPLQN  207 (395)
T ss_pred             CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcc---------------------cCcccccccc
Confidence            45688999999999999999   99999999999999999888 54444                     4555556666


Q ss_pred             HHHHHHHHHHHH
Q 032187           95 RLRSLNSVLQIW  106 (145)
Q Consensus        95 rl~~l~~i~~~~  106 (145)
                      ..+.+..++...
T Consensus       208 e~~~l~~~l~~h  219 (395)
T KOG1414|consen  208 EADHLEKELNTH  219 (395)
T ss_pred             HHHHHHHHHhcc
Confidence            666666666554

>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1)

Probab=84.04  E-value=12  Score=28.01  Aligned_cols=60  Identities=17%  Similarity=0.298  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           38 RSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR   97 (145)
Q Consensus        38 rSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~   97 (145)
                      +-+.=-...+.+|+.+|..|..|--.=..++..+-.+.+.+..+|..|...+.-|.+||+
T Consensus         7 kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLR   66 (120)
T PF10482_consen    7 KLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLR   66 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            333334455666777777776665555555555555555666666666666665555554

At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=83.99  E-value=2.2  Score=33.56  Aligned_cols=51  Identities=20%  Similarity=0.330  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV  102 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i  102 (145)
                      |+|+|.+..+-=..|.-|..++.    .-..|..+++.||.++.+|...| .+.+.
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl-~V~ek   52 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL-IVQEK   52 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            68888888888888888888773    45667788888888888877777 44433

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=83.67  E-value=18  Score=27.74  Aligned_cols=76  Identities=18%  Similarity=0.186  Sum_probs=38.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      -...|.+.+-.-=.-+++.+..|+.++..+..+...|...+..++..-..+..+=...+.++.+|.....++...|
T Consensus        35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l  110 (140)
T PF10473_consen   35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL  110 (140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3445555555555556666666666666666665555555555444443333333333444444444433333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=83.35  E-value=9  Score=31.79  Aligned_cols=45  Identities=18%  Similarity=0.384  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      =+++..+||.++..+..++..|+.++.       .|.++|-       .|=+++++|.+
T Consensus        91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~-------kLYEKiRylqS  135 (248)
T PF08172_consen   91 FRQRNAELEEELRKQQQTISSLRREVE-------SLRADNV-------KLYEKIRYLQS  135 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-------HHHHHHHHHhh
Confidence            344556677666666665555554444       3444554       66666666644

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=83.19  E-value=3.1  Score=31.00  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           57 LESANAMLKQNIDSSVQRYVEMESANNILRVQA   89 (145)
Q Consensus        57 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~   89 (145)
                      .+.|...|+.+|..|.++...|+.||..||.-+
T Consensus        65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~   97 (123)
T KOG4797|consen   65 VREEVEVLKEQIRELEERNSALERENSLLKTLA   97 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            345566677777777777778888888887654

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=83.07  E-value=16  Score=26.89  Aligned_cols=51  Identities=24%  Similarity=0.240  Sum_probs=24.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEM   78 (145)
Q Consensus        28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l   78 (145)
                      -+..-.|...-|+..=.+.-++|+..+..|+.++.....++..|...+..+
T Consensus        20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea   70 (107)
T PF09304_consen   20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA   70 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555544444444455555555555555444444444444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=82.90  E-value=6.6  Score=30.57  Aligned_cols=51  Identities=22%  Similarity=0.337  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS   98 (145)
Q Consensus        48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~   98 (145)
                      .+|..+|..|+.+|..|...+..+..+...+......|+.+...++++-..
T Consensus        92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e  142 (158)
T PF09744_consen   92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERE  142 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHH
Confidence            345567777777777777666666666666666666677666666666543

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=82.86  E-value=14  Score=26.05  Aligned_cols=73  Identities=16%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           27 KRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        27 rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      -++...++.....=..|...+..||.++..|..|...-..++-.+......+..||..|+.++..=..-+..|
T Consensus         6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L   78 (96)
T PF08647_consen    6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQL   78 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            4566777777888888999999999999999999999999999999999999999999999886444333333

>PRK00295 hypothetical protein; Provisional

Probab=82.82  E-value=12  Score=25.06  Aligned_cols=51  Identities=16%  Similarity=0.124  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA  107 (145)
Q Consensus        50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~  107 (145)
                      ++.++..|+.........+..       |...=.....++..|..++..|..=+..+.
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~-------Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQA-------LNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455566655555444443332       222222233445777778777766555543

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=82.73  E-value=24  Score=30.43  Aligned_cols=31  Identities=19%  Similarity=0.142  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           60 ANAMLKQNIDSSVQRYVEMESANNILRVQAM   90 (145)
Q Consensus        60 eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~   90 (145)
                      |...|..++..+..++..+..||..|...+.
T Consensus       235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~  265 (306)
T PF04849_consen  235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQ  265 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3444555555555555556666665555543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=82.59  E-value=23  Score=30.80  Aligned_cols=43  Identities=16%  Similarity=0.193  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ   88 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~   88 (145)
                      .+..|..++..|..+|..|..++..+..++..+..+-..+..+
T Consensus       138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~  180 (342)
T PF06632_consen  138 ANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEED  180 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677777777777777777777776666555544443

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=82.51  E-value=6.6  Score=32.21  Aligned_cols=50  Identities=18%  Similarity=0.272  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           50 LVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        50 Le~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      |+.+.+.+..+-..|..++......+.....++..|+.|.+++......|
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL  198 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL  198 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            55666666666666777777777777777777777777777766655544

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=82.04  E-value=21  Score=27.42  Aligned_cols=17  Identities=18%  Similarity=0.233  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 032187           77 EMESANNILRVQAMELT   93 (145)
Q Consensus        77 ~l~~EN~~Lra~~~~L~   93 (145)
                      .+......+..++.++.
T Consensus       134 ~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  134 SLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.79  E-value=20  Score=27.13  Aligned_cols=25  Identities=16%  Similarity=0.300  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDS   70 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~   70 (145)
                      .+..|..++..|+.+...+...+..
T Consensus        36 EI~sL~~K~~~lE~eld~~~~~l~~   60 (143)
T PF12718_consen   36 EITSLQKKNQQLEEELDKLEEQLKE   60 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=81.52  E-value=15  Score=31.44  Aligned_cols=53  Identities=13%  Similarity=0.224  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      +.++...+.+...+..++..+...|.....|...|..++.....+|.....++
T Consensus       234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li  286 (344)
T PF12777_consen  234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI  286 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence            33333333444444444444444444444555555555554444444444443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK04406 hypothetical protein; Provisional

Probab=81.49  E-value=14  Score=25.19  Aligned_cols=47  Identities=15%  Similarity=0.153  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           57 LESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        57 L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      ++.....|..++.....-+..|...=..-..++..|..+|+.|.+=+
T Consensus         9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl   55 (75)
T PRK04406          9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV   55 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444333333332222222333455555555554444

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=81.48  E-value=17  Score=33.14  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           50 LVNEINHLESANAMLKQNIDSSVQR-YVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        50 Le~~v~~L~~eN~~L~~~~~~l~~~-~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      |..+-+.|++....+..+|...-+. ...+..|-..|+.+...+...|..|..
T Consensus        85 l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~  137 (472)
T TIGR03752        85 LKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR  137 (472)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555544443322 234444555555555555555555544

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=81.20  E-value=7.6  Score=26.04  Aligned_cols=36  Identities=11%  Similarity=0.152  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           59 SANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD   94 (145)
Q Consensus        59 ~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~   94 (145)
                      .....+..++..+.++...+..||..|+.++..|.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~   59 (85)
T TIGR02209        24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            344455566666666677777888888888777664

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=81.02  E-value=15  Score=30.78  Aligned_cols=52  Identities=19%  Similarity=0.347  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR   97 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~   97 (145)
                      ...++..++..+..||..|..++..+...|..+...=..|+.+...|...+.
T Consensus       136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~  187 (290)
T COG4026         136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLK  187 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555554444444444444444444444433333

>PRK04325 hypothetical protein; Provisional

Probab=80.89  E-value=15  Score=24.96  Aligned_cols=51  Identities=22%  Similarity=0.201  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRV---QAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra---~~~~L~~rl~~l~~i~~~~  106 (145)
                      ++..++.++..|+.........|..|          |.++-.   ++..|..+|+.|.+=+..+
T Consensus         3 ~~~~~e~Ri~~LE~klAfQE~tIe~L----------N~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          3 AVQEMEDRITELEIQLAFQEDLIDGL----------NATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567777777776665555544433          444433   4578888888877655554

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=80.78  E-value=27  Score=31.26  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV  102 (145)
Q Consensus        43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i  102 (145)
                      +.++..+-..-+..|+.|-.+|.+++..-.+.....+.+...|..++.+-..|-.++...
T Consensus       130 haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~m  189 (561)
T KOG1103|consen  130 HAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLM  189 (561)
T ss_pred             HhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444457889999999999999988899999999999999999888887776543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=80.41  E-value=43  Score=30.30  Aligned_cols=62  Identities=19%  Similarity=0.272  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCChHHH-HHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187            9 SSGSDSDPRYANVDER-KRKRMISNRESARRSRMK-----KQKQMEDLVNEINHLESANAMLKQNIDS   70 (145)
Q Consensus         9 ssgs~~~~~~~~~deR-r~rR~~sNReSArrSR~R-----Kq~~l~eLe~~v~~L~~eN~~L~~~~~~   70 (145)
                      |.+|+.|.+.....++ .+--+..-|.+|++--.|     =++++.+.|..+..|+.||.+|..+...
T Consensus         6 s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~   73 (459)
T KOG0288|consen    6 SQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR   73 (459)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566665543322222 122233444555544333     3578889999999999999998876654

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=80.29  E-value=30  Score=28.43  Aligned_cols=29  Identities=17%  Similarity=0.163  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           60 ANAMLKQNIDSSVQRYVEMESANNILRVQ   88 (145)
Q Consensus        60 eN~~L~~~~~~l~~~~~~l~~EN~~Lra~   88 (145)
                      ++..|..+.+.+...|+.+..||+.|+.+
T Consensus       180 ~~~al~Kq~e~~~~EydrLlee~~~Lq~~  208 (216)
T KOG1962|consen  180 KVDALKKQSEGLQDEYDRLLEEYSKLQEQ  208 (216)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444443

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.13  E-value=36  Score=28.97  Aligned_cols=63  Identities=17%  Similarity=0.227  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           41 MKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        41 ~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      .+..+.+.+|+.+...|..|...|..+...+.+.-.....+.+.+.-++.++.+.+.+++.-+
T Consensus        60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~  122 (314)
T PF04111_consen   60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY  122 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666666666666666655555544555555555555555555555444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=80.09  E-value=45  Score=30.01  Aligned_cols=71  Identities=20%  Similarity=0.245  Sum_probs=61.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           31 SNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        31 sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      .++...++-=.++...+.+-..+.+.|+.+...+..++..++..+.....++..++.++..+..+|..|..
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~  108 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV  108 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            55666777777778888888888899999999999999999999999999999999999999999998763

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=80.08  E-value=11  Score=31.29  Aligned_cols=49  Identities=10%  Similarity=0.051  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032187           62 AMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWAEIS  110 (145)
Q Consensus        62 ~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~~~~  110 (145)
                      ...+.++..|.++......+...|+.++..|+.---.|=+=+.++++..
T Consensus        89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~  137 (248)
T PF08172_consen   89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN  137 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            3333334444444444555555566666666655555555555555543

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	2e-08
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	9e-08
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	3e-07
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	4e-07
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	3e-05
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	2e-04
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	2e-04
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	2e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 47.0 bits (112), Expect = 2e-08
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRY 75
          ++  R++ NRE+AR SR KK++ ++ L N +  LE+ N  L + + +    Y
Sbjct: 1  KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 45.4 bits (108), Expect = 9e-08
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70
          +K K+M  N+ +A R R KK+ + E L  E   LE  N  LK+  DS
Sbjct: 2  KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS 48

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 44.0 bits (104), Expect = 3e-07
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 23 ERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70
          E++R R   N+ +A + R ++++  + L  E + LE   + L+  I +
Sbjct: 1  EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN 48

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 43.9 bits (104), Expect = 4e-07
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70
          ++RK +  NR +A RSR K++  ++ L  +   L S N  L+  +  
Sbjct: 1  KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTL 47

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 10/47 (21%), Positives = 26/47 (55%)

Query: 24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDS 70
          +  ++ + NR +A +SR +K +++  L  ++  L++ N+ L    + 
Sbjct: 1  KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANM 47

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 4  IQRQGSSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAM 63
          ++ +     D         +  + R   N  + R+SR K + +  +  +++  L + N  
Sbjct: 1  VKSKAKKTVDKH------SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENER 54

Query: 64 LKQNID 69
          L++ ++
Sbjct: 55 LQKKVE 60

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%)

Query: 22  DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESA 81
             ++R+R + NR  A   R+K+  Q E+L  +   L+     L     S       + S 
Sbjct: 35  QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94

Query: 82  NNILRVQAMELT 93
              L+  A  + 
Sbjct: 95  YEALQNFARTVA 106

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 22 DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID 69
          D    KR   N E+ARRSR +K ++M+ L +++  L S N  L+  + 
Sbjct: 8  DPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.62
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.45
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.38
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.33
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.26
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.19
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.1
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.75
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.7
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.42
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.21
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.51
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	97.01
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.42
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	96.04
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.59
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	95.55
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.43
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	94.88
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	94.77
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	94.66
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	94.23
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	93.93
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	93.55
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	93.5
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	93.39
3m48_A	33	General control protein GCN4; leucine zipper, synt	92.58
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	92.47
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	92.15
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.94
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	91.75
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	91.7
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	91.67
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	91.52
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	91.41
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	91.37
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	91.14
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	90.95
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	90.94
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	90.59
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	90.58
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	89.82
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	89.62
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	89.5
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	89.47
2wvr_A	209	Geminin; DNA replication license, DNA replication	89.24
2hy6_A	34	General control protein GCN4; protein design, para	88.43
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	88.25
2bni_A	34	General control protein GCN4; four helix bundle, a	88.14
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	88.1
1uo4_A	34	General control protein GCN4; four helix bundle, c	87.75
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	87.58
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	87.56
3bas_A	89	Myosin heavy chain, striated muscle/general contro	87.19
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	87.14
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	86.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	86.78
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	86.76
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	86.61
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	86.29
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	86.24
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	86.22
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	86.0
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	84.98
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	84.9
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	84.07
3a7o_A	75	Autophagy protein 16; coiled-coil, coiled coil, cy	84.03
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	83.21
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	82.95
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	82.32
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	82.3
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	82.13
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	81.93
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	81.9
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	81.68
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	81.5
1fmh_A	33	General control protein GCN4; coiled coil, leucine	81.43
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	81.3
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	81.04
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	80.95
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	80.84
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	80.44
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	80.41
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	80.14

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.62  E-value=5.3e-16  Score=100.23  Aligned_cols=52  Identities=33%  Similarity=0.517  Sum_probs=48.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRY   75 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~   75 (145)
                      |+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|.+.|
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999999999998877554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.45  E-value=4.9e-13  Score=88.16  Aligned_cols=51  Identities=24%  Similarity=0.414  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           23 ERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQ   73 (145)
Q Consensus        23 eRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~   73 (145)
                      ||+++|+++||+||++||.||++++++|+.+|..|+.+|..|..++..|..
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~   51 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK   51 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999888887765443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.38  E-value=8.4e-13  Score=87.30  Aligned_cols=47  Identities=30%  Similarity=0.386  Sum_probs=41.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           29 MISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRY   75 (145)
Q Consensus        29 ~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~   75 (145)
                      ...||+||++||.||++|+++|+.+|..|+.+|..|..++..|++.+
T Consensus        14 R~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           14 RARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34599999999999999999999999999999999998888776654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.33  E-value=7.2e-12  Score=81.83  Aligned_cols=49  Identities=29%  Similarity=0.381  Sum_probs=44.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~   72 (145)
                      |+.+|+++||+||++||.||++++++|+.+|..|+.+|..|..++..|.
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~   49 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR   49 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999988877543

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.26  E-value=1.7e-11  Score=80.32  Aligned_cols=48  Identities=21%  Similarity=0.345  Sum_probs=43.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           25 KRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        25 r~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~   72 (145)
                      +.+|..+||+||++||.||++++++|+.+|..|+.+|..|..++..|.
T Consensus         2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~   49 (62)
T 1jnm_A            2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR   49 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999999999988887544

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.19  E-value=7.1e-11  Score=79.65  Aligned_cols=60  Identities=23%  Similarity=0.305  Sum_probs=48.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           26 RKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNIL   85 (145)
Q Consensus        26 ~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~L   85 (145)
                      .||+..||.|+|..|.||.+|+.+||.+|..|+..+..|..++..|...+..|..||..|
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l   69 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            688999999999999999999999999999999988876655555555555555555443

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.10  E-value=3.2e-10  Score=74.72  Aligned_cols=59  Identities=34%  Similarity=0.421  Sum_probs=45.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA   89 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~   89 (145)
                      |+.+++..||.||.|||.||+++.++|+.++..|+.+|..|..++..       +..|+..|+.-+
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~ll   60 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKDLI   60 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            56788899999999999999999999999999999999998887774       445666555544

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.75  E-value=7.5e-08  Score=67.26  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           20 NVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID   69 (145)
Q Consensus        20 ~~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~   69 (145)
                      ..|++-..|..+|.++|++||.+++..-.+++.++..|+.||..|..+|.
T Consensus        11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~   60 (87)
T 1hjb_A           11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE   60 (87)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677788999999999999999999999999887777776666555

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.70  E-value=1.2e-07  Score=65.03  Aligned_cols=51  Identities=18%  Similarity=0.231  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           21 VDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSS   71 (145)
Q Consensus        21 ~deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l   71 (145)
                      .|+.-..|..+|.++|++||.+++....+++.++..|+.||..|..+|..|
T Consensus        12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L   62 (78)
T 1gu4_A           12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL   62 (78)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355556667899999999999999999999999999888888887777643

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.42  E-value=6.3e-09  Score=75.25  Aligned_cols=64  Identities=25%  Similarity=0.398  Sum_probs=45.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      |.+||.++||.+|+.||.||.+..++||.++..|..+...|              ..||..|+.++..+..++..|..
T Consensus        37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L--------------~~En~~l~~E~~~lk~k~e~L~~  100 (107)
T 3a5t_A           37 KQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL--------------ASENASMKLELDALRSKYEALQN  100 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT--------------TSTTSHHHHTTTSSSSCC-----
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999998887666554444              45566666666666555555543

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.21  E-value=1.1e-05  Score=56.60  Aligned_cols=48  Identities=29%  Similarity=0.398  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           22 DERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNID   69 (145)
Q Consensus        22 deRr~rR~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~   69 (145)
                      .-|.+||-++||.+|+-||.||.....+||.++..|..+...|..++.
T Consensus        25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~   72 (90)
T 2wt7_B           25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVS   72 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            336778999999999999999999999999988887776666654433

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.51  E-value=0.00033  Score=42.43  Aligned_cols=39  Identities=23%  Similarity=0.457  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA   89 (145)
Q Consensus        44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~   89 (145)
                      |+|+.+||.++..|+.-|.+|..++..       +..||..||+-+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHh
Confidence            589999999999999999988877764       679999999754

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=97.01  E-value=0.0065  Score=41.66  Aligned_cols=52  Identities=31%  Similarity=0.369  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      -|.-++..|+.+|..|..++..+......+..||..|+.+......||+.|-
T Consensus        24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444666677777777777777777777788999999999999999988764

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.42  E-value=0.0013  Score=46.01  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032187           22 DERKRKRMISNRESARRSRMKKQKQMEDLVN   52 (145)
Q Consensus        22 deRr~rR~~sNReSArrSR~RKq~~l~eLe~   52 (145)
                      ..|..||..+||.+|++||.||....+.|+.
T Consensus        60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            3467789999999999999999999887763

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=96.04  E-value=0.033  Score=35.02  Aligned_cols=47  Identities=15%  Similarity=0.363  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELT   93 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~   93 (145)
                      .+.|-.+|+.|+.||..|+.++..-..++..++.|-.-+++-+..|.
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq   51 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence            57899999999999999999999999999999999887776555443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.59  E-value=0.21  Score=36.93  Aligned_cols=61  Identities=13%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           42 KKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV  102 (145)
Q Consensus        42 RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i  102 (145)
                      +.+...+.|+.++..+..|+..|+.++..+..++..+..++..|+.++.+|..++..|..=
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788888999999999999999999999999999999999999998888888877543

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=95.55  E-value=0.079  Score=34.32  Aligned_cols=42  Identities=14%  Similarity=0.218  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRV   87 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra   87 (145)
                      -+..-|++|.+|-+-|..|..++..+...++.+.+||..||.
T Consensus        21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            355568899999999999999999999999999999999984

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.43  E-value=0.31  Score=33.22  Aligned_cols=59  Identities=14%  Similarity=0.141  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      .-++.||.+|.++=....-|.-++..|+++...+..+|..++.....|......|..=.
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~   64 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            35788889888888888888888888888888888888886666665665555554433

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=94.88  E-value=0.093  Score=36.17  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      ....+......|+.||..|++++..|...+..|..+|..+
T Consensus        37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~   76 (87)
T 1hjb_A           37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3345567788899999999999999999999999888543

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=94.77  E-value=0.12  Score=33.26  Aligned_cols=40  Identities=18%  Similarity=0.330  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           65 KQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ  104 (145)
Q Consensus        65 ~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~  104 (145)
                      ......+......|..+|..|+.++..|...+..|..+|.
T Consensus        22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677788889999999999999999999999988874

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=94.66  E-value=0.19  Score=30.41  Aligned_cols=44  Identities=25%  Similarity=0.224  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQA   89 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~   89 (145)
                      .+..||.+|+.|+.||..|...+---+..+.-++.|-+-||..+
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki   47 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI   47 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999998877665556666666666666554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=94.23  E-value=0.19  Score=32.18  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      ..+..|...+..+..+|..|+.++..|...+..|..++..
T Consensus        23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A           23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3456677788899999999999999999999999888753

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=93.93  E-value=0.24  Score=31.33  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      ..+..|...+..++.+|..|+.++..|+..+..|..++
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566777788888999999999999999988887765

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=93.55  E-value=0.46  Score=33.53  Aligned_cols=30  Identities=13%  Similarity=0.194  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRY   75 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~   75 (145)
                      .+..|..++..|+.||..|+.++..|.-++
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L   42 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQL   42 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577788888888888888888888776444

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=93.50  E-value=0.14  Score=34.60  Aligned_cols=38  Identities=16%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           67 NIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQ  104 (145)
Q Consensus        67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~  104 (145)
                      ....+...+..|+.||..|+.++..|...+..|..+|.
T Consensus        37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~   74 (78)
T 1gu4_A           37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455667788889999999999999998888877663

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=93.39  E-value=0.66  Score=32.82  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           48 EDLVNEINHLESANAMLKQ-------NIDSSVQRYVEMESANNILRVQAM   90 (145)
Q Consensus        48 ~eLe~~v~~L~~eN~~L~~-------~~~~l~~~~~~l~~EN~~Lra~~~   90 (145)
                      -+||..++.++.||..|+.       ++..|...+..|..||..|+.+-.
T Consensus        40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~   89 (104)
T 3s9g_A           40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE   89 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578888888888877776       455555555555566666555543

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=92.58  E-value=0.17  Score=29.00  Aligned_cols=27  Identities=22%  Similarity=0.257  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQ   73 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~   73 (145)
                      +..||.+|..|-.+|..|..++..|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            567888888888888877777776553

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.47  E-value=1.3  Score=31.02  Aligned_cols=62  Identities=16%  Similarity=0.220  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 032187           44 QKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR-SLNSVLQI  105 (145)
Q Consensus        44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~-~l~~i~~~  105 (145)
                      +..+..|+.+++....+...|...+..-......++.++..+..++.+|+.-|= ..|.++..
T Consensus        11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~   73 (97)
T 2eqb_B           11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVAD   73 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677777777788888888888877777778888888888888888887654 35555543

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=92.15  E-value=0.3  Score=28.10  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQ   73 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~   73 (145)
                      ++..||.+|..|-.+|..|..++..|+.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4677888888877777777776665543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.94  E-value=2.7  Score=30.82  Aligned_cols=48  Identities=8%  Similarity=0.034  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           53 EINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        53 ~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      ++..|+.+...+..++..++..+..+..++..+..++.+|..++..|.
T Consensus        76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~  123 (138)
T 3hnw_A           76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ  123 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444445555555555555555555555555555444

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=91.75  E-value=0.4  Score=27.86  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQR   74 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~   74 (145)
                      ++..||.+|..|-.+|..|..++..|+..
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l   30 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKK   30 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            56788888888888888888877766543

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=91.70  E-value=0.8  Score=28.28  Aligned_cols=38  Identities=21%  Similarity=0.106  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ   88 (145)
Q Consensus        51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~   88 (145)
                      +.++..|..-|..|..++..+...+..++.|+..|++=
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~L   40 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKL   40 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            56788889999999999999888888888888777653

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=91.67  E-value=0.3  Score=31.06  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           66 QNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVL  103 (145)
Q Consensus        66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~  103 (145)
                      ..+..|...+..+..+|..|+.++..|...+..|..+|
T Consensus        22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l   59 (62)
T 1jnm_A           22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV   59 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777788889999999999999999888876655

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=91.52  E-value=0.73  Score=31.52  Aligned_cols=45  Identities=16%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      -.||..|...+..+...+..+..||..|+    +|..+.++|-++|..+
T Consensus        37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L   81 (83)
T 1wlq_A           37 LKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERL   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence            35788888888888888888888888766    5677778888777543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=91.41  E-value=0.44  Score=31.47  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           64 LKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS   98 (145)
Q Consensus        64 L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~   98 (145)
                      |..++..+......+..||..|+.++..|...+..
T Consensus        34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~   68 (70)
T 1gd2_E           34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445556778888888888888777654

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=91.37  E-value=0.27  Score=28.62  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQR   74 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~   74 (145)
                      ++..||.+|..|-.+|..|..++..|+..
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l   30 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKE   30 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            46788888888888888888877766543

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=91.14  E-value=0.35  Score=26.69  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           73 QRYVEMESANNILRVQAMELTDRL   96 (145)
Q Consensus        73 ~~~~~l~~EN~~Lra~~~~L~~rl   96 (145)
                      ..+..+++||..|++.+++|-.++
T Consensus         6 allasleaenkqlkakveellakv   29 (31)
T 1p9i_A            6 ALLASLEAENKQLKAKVEELLAKV   29 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345667888888888888776543

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=90.95  E-value=0.72  Score=31.27  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      -.||..|..++..+...+..+..||..|+    ++.++.+.|-+|+..
T Consensus        33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~----el~~~~~~laevl~~   76 (79)
T 2zxx_A           33 LKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIER   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            35888999999988888888888988774    666777777777754

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=90.94  E-value=1.1  Score=30.30  Aligned_cols=60  Identities=17%  Similarity=0.198  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD----RLRSLNSVLQIW  106 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~----rl~~l~~i~~~~  106 (145)
                      .+++..++..++.+|..|..++..+...+..-..+-..++.++..+..    +|..|+++-+-+
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL   71 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL   71 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            356677889999999999999999999988888877777777765444    444555555443

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=90.59  E-value=0.53  Score=26.99  Aligned_cols=28  Identities=7%  Similarity=0.093  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQ   73 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~   73 (145)
                      ++..||.+|..|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4677888888877777777777665543

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=90.58  E-value=2.1  Score=27.23  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=18.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHH
Q 032187           29 MISNRESARRSRMKKQKQMEDLVN   52 (145)
Q Consensus        29 ~~sNReSArrSR~RKq~~l~eLe~   52 (145)
                      .-+||.++|+||.|=+..++....
T Consensus         6 ryknr~asrk~rakfkn~lqh~r~   29 (63)
T 2c9l_Y            6 RYKNRVAARKSRAKFKQLLQHYRE   29 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358999999999998877665443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=89.82  E-value=5.4  Score=38.01  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           73 QRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        73 ~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      ++...++.||..|+.++.+|...+...
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456667777777777766544433

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=89.62  E-value=1.3  Score=28.13  Aligned_cols=38  Identities=18%  Similarity=0.102  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           51 VNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ   88 (145)
Q Consensus        51 e~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~   88 (145)
                      |.++..|+..|-.|..++..|...+...+.|+..|.+-
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L   47 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL   47 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777888888888888888877777777777766543

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=89.50  E-value=0.022  Score=39.66  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=19.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQK   45 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~   45 (145)
                      |..||.-+||.+|++||.||..
T Consensus        66 rdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           66 RDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH
Confidence            5668999999999999999853

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=89.47  E-value=0.75  Score=26.22  Aligned_cols=27  Identities=7%  Similarity=0.150  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQ   73 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~   73 (145)
                      +..||.+|..|-.+|..|..++..++.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            567777887777777777766665543

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=89.24  E-value=1.5  Score=34.65  Aligned_cols=45  Identities=13%  Similarity=0.281  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           58 ESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIW  106 (145)
Q Consensus        58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~  106 (145)
                      -.||..|..+|..+...+..+..||..|+    +|..++++|-++|..+
T Consensus       114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLk----eLae~~q~la~vi~~l  158 (209)
T 2wvr_A          114 LKENEKLHKEIEQKDNEIARLKKENKELA----EVAEHVQYMAELIERL  158 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            35788888888877777777777777665    5666677777777665

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=88.43  E-value=0.88  Score=26.10  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQ   73 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~   73 (145)
                      ++..||.+|..|-.+|..|..++..|..
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4667888888888888877777766543

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=88.25  E-value=1  Score=27.01  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           44 QKQMEDLVNEINHLESANAMLKQNI   68 (145)
Q Consensus        44 q~~l~eLe~~v~~L~~eN~~L~~~~   68 (145)
                      .....+||.+|+.|+.||..|++-+
T Consensus        16 e~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           16 ENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            4567899999999999999988654

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=88.14  E-value=0.78  Score=26.34  Aligned_cols=27  Identities=7%  Similarity=0.209  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~   72 (145)
                      ++..||.+|..|-.+|..|..++..++
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk   28 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIK   28 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence            466788888887777777777766554

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=88.10  E-value=2  Score=28.70  Aligned_cols=49  Identities=12%  Similarity=0.133  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLN  100 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~  100 (145)
                      .++.+||.+++-++.-...|...+.       .-..+-..|..++..|..|+..+.
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~-------~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALA-------DARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3566666666666665555554444       344455555666666666666553

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=87.75  E-value=0.85  Score=26.18  Aligned_cols=28  Identities=7%  Similarity=0.124  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQ   73 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~   73 (145)
                      ++..||.+|..|-.+|..|..++..++.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4567888888888888877777776553

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=87.58  E-value=1.2  Score=25.38  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSVQ   73 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~~   73 (145)
                      +..||.+|..|-.+|..|..++..++.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            567888888888888777777766543

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=87.56  E-value=4.9  Score=27.12  Aligned_cols=31  Identities=13%  Similarity=0.192  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           48 EDLVNEINHLESANAMLKQNIDSSVQRYVEM   78 (145)
Q Consensus        48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l   78 (145)
                      -+|..++..|+.|...|+..++.+...+..+
T Consensus        23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql   53 (83)
T 2xdj_A           23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQV   53 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4444555555555555555444443333333

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=87.19  E-value=5.2  Score=26.99  Aligned_cols=55  Identities=15%  Similarity=0.100  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           43 KQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR   97 (145)
Q Consensus        43 Kq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~   97 (145)
                      -.....+|+.+...|..+...|..++..+...+..+......|-.++.+|.+||.
T Consensus        33 ~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           33 TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344556777777777777777766666667777777777777777777766653

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=87.14  E-value=6.8  Score=29.45  Aligned_cols=37  Identities=11%  Similarity=0.095  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           52 NEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQ   88 (145)
Q Consensus        52 ~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~   88 (145)
                      .-+..|..|...|..+++.+..+...+..||..|-..
T Consensus        96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R  132 (152)
T 3a7p_A           96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR  132 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555666666555444

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=86.93  E-value=5.1  Score=28.99  Aligned_cols=49  Identities=16%  Similarity=0.135  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR   97 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~   97 (145)
                      .|+.+.++-+...++|..+|..|.+++....+|=..||.+...|..|+.
T Consensus        61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~  109 (121)
T 3mq7_A           61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA  109 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence            3444333334445555555555555555555555555555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.78  E-value=8.1  Score=33.04  Aligned_cols=54  Identities=13%  Similarity=0.078  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRS   98 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~   98 (145)
                      +.+..++.+.+.++.+++.+..+++...+.+..++.|...|+.++.+-.+++..
T Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~  562 (597)
T 3oja_B          509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAE  562 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHH
Confidence            344455556666666666666666666666666666666666655544444443

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=86.76  E-value=5.8  Score=27.11  Aligned_cols=26  Identities=19%  Similarity=0.443  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQR   74 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~   74 (145)
                      ..-.+|..|+.+|..|..++..+.+.
T Consensus        20 syIdKVR~LEqqN~~Le~~i~~l~~~   45 (93)
T 3s4r_A           20 NLIDKVRFLEQQNKILLAELEQLKGQ   45 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33457888888888888777766543

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=86.61  E-value=2.5  Score=28.20  Aligned_cols=52  Identities=19%  Similarity=0.163  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQIWA  107 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i~~~~~  107 (145)
                      +|+.++..|+......-..       +..|...=..-..++..|+.++..|..=+..+.
T Consensus        11 ~le~Ri~~LE~klAfqE~t-------IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           11 ELEARLVELETRLSFQEQA-------LTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555555555444443333       333333333444556777888877766555543

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=86.29  E-value=1.2  Score=28.53  Aligned_cols=31  Identities=19%  Similarity=0.177  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           66 QNIDSSVQRYVEMESANNILRVQAMELTDRL   96 (145)
Q Consensus        66 ~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl   96 (145)
                      ..+..|..++..|..+|..|+.++..|+..+
T Consensus        30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666777778889999998888887655

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=86.24  E-value=1.5  Score=25.45  Aligned_cols=29  Identities=17%  Similarity=0.244  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           58 ESANAMLKQNIDSSVQRYVEMESANNILR   86 (145)
Q Consensus        58 ~~eN~~L~~~~~~l~~~~~~l~~EN~~Lr   86 (145)
                      -.||.+|...+..-.+.+..+..||..|.
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~   34 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKELA   34 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            36889999999988888888888888775

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=86.22  E-value=5.5  Score=26.36  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 032187           48 EDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD----RLRSLNSVLQIW  106 (145)
Q Consensus        48 ~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~----rl~~l~~i~~~~  106 (145)
                      .++..++..++.+|..|..++..+.+.+..-..+-..++.++..+..    +|..|+++-+-+
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L   65 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL   65 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35778899999999999999999999988888877777777765444    444565555443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=86.00  E-value=6  Score=26.57  Aligned_cols=52  Identities=15%  Similarity=0.162  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           48 EDLVNEINHLESANAMLKQNIDSSV-------QRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        48 ~eLe~~v~~L~~eN~~L~~~~~~l~-------~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      .++-.+|..|-.||.+|...-+.+.       .+...+.+|+.+|+.++..+..-...+
T Consensus         5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~   63 (77)
T 2w83_C            5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL   63 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4566788889999998887665544       566677777777777776655444433

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=84.98  E-value=0.6  Score=31.40  Aligned_cols=26  Identities=27%  Similarity=0.526  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           62 AMLKQNIDSSVQRYVEMESANNILRV   87 (145)
Q Consensus        62 ~~L~~~~~~l~~~~~~l~~EN~~Lra   87 (145)
                      ..|+.+|..|..+...|+.||..||.
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555566667766654

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=84.90  E-value=8  Score=27.23  Aligned_cols=29  Identities=17%  Similarity=0.237  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           44 QKQMEDLVNEINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        44 q~~l~eLe~~v~~L~~eN~~L~~~~~~l~   72 (145)
                      -..+.+|+.+|..|..||+.|+.+.....
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46788999999999999999988877654

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=84.07  E-value=1.8  Score=28.66  Aligned_cols=23  Identities=17%  Similarity=0.108  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 032187           77 EMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        77 ~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      .|..++..|..++.+|..+...|
T Consensus        51 ~L~~~~~~l~~e~~~L~~~~~~L   73 (83)
T 1nkp_B           51 YMRRKNHTHQQDIDDLKRQNALL   73 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444333333

>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}

Probab=84.03  E-value=6.4  Score=26.15  Aligned_cols=50  Identities=20%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTD   94 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~   94 (145)
                      .++.+=+.++..|+....-=......|...+-.+..||..|...+..|.+
T Consensus        25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~   74 (75)
T 3a7o_A           25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK   74 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence            34444555555555555554555556666677788899998888776653

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=83.21  E-value=3.1  Score=25.78  Aligned_cols=16  Identities=31%  Similarity=0.295  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 032187           53 EINHLESANAMLKQNI   68 (145)
Q Consensus        53 ~v~~L~~eN~~L~~~~   68 (145)
                      .+..|+.||..|+.++
T Consensus        20 d~eaLk~E~~eLk~k~   35 (53)
T 2yy0_A           20 EIELLRLELAEMKEKY   35 (53)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            4444444444444433

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=82.95  E-value=3.2  Score=25.75  Aligned_cols=28  Identities=4%  Similarity=0.033  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           74 RYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        74 ~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      .+..|..||..|++++.+|..++..|..
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~~~~el~~   47 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKLKA   47 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666666665555544

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=82.32  E-value=11  Score=27.25  Aligned_cols=28  Identities=14%  Similarity=0.216  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           74 RYVEMESANNILRVQAMELTDRLRSLNS  101 (145)
Q Consensus        74 ~~~~l~~EN~~Lra~~~~L~~rl~~l~~  101 (145)
                      ++..+..|+..|..++.+....+..|..
T Consensus        72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~   99 (121)
T 3mq7_A           72 KVEELEGEITTLNHKLQDASAEVERLRR   99 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3556666666666666665555555543

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=82.30  E-value=6.7  Score=24.22  Aligned_cols=19  Identities=26%  Similarity=0.385  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 032187           49 DLVNEINHLESANAMLKQN   67 (145)
Q Consensus        49 eLe~~v~~L~~eN~~L~~~   67 (145)
                      +|..++..|...|..|...
T Consensus        13 ~l~~~l~~L~~rN~rL~~~   31 (51)
T 3m91_A           13 QLEARIDSLAARNSKLMET   31 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=82.13  E-value=2.4  Score=34.30  Aligned_cols=29  Identities=17%  Similarity=0.166  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           77 EMESANNILRVQAMELTDRLRSLNSVLQI  105 (145)
Q Consensus        77 ~l~~EN~~Lra~~~~L~~rl~~l~~i~~~  105 (145)
                      .+...|..|.+.+.+++.+|..|.+-+..
T Consensus        65 ~L~arNe~L~~~Lk~ar~El~~LkeEler   93 (251)
T 3m9b_A           65 SLAARNSKLMETLKEARQQLLALREEVDR   93 (251)
T ss_dssp             HHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444433

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=81.90  E-value=10  Score=29.43  Aligned_cols=68  Identities=13%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCC
Q 032187           45 KQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLR----SLNSVLQIWAEISGI  112 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~----~l~~i~~~~~~~~g~  112 (145)
                      ++++.-..-|..|..||..|..++......+..|..+=+.|+.+...+...+.    .+.-+....+..+|+
T Consensus        13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl   84 (190)
T 4emc_A           13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNV   84 (190)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCc
Confidence            33444444566666666666666665554454444444444444433333333    333333334555675

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=81.68  E-value=9.6  Score=25.57  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           40 RMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSV  102 (145)
Q Consensus        40 R~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l~~i  102 (145)
                      |+|=++.+..-..++..|..-...|..--..+..-+..+..|-..|...+.-|.++..-|..+
T Consensus        13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~   75 (78)
T 3iv1_A           13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567778888888888888888888888888888888999999999998888888777554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=81.50  E-value=16  Score=27.86  Aligned_cols=65  Identities=20%  Similarity=0.216  Sum_probs=41.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           28 RMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSL   99 (145)
Q Consensus        28 R~~sNReSArrSR~RKq~~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl~~l   99 (145)
                      .+..-=+.=|+.|.+-.+.+.+|+.++..|..|...++..       +..+..||..|-..+..|...-.++
T Consensus        73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~-------~~k~~~e~r~L~Ekl~~lEKe~a~~  137 (168)
T 3o0z_A           73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN-------LEKVEGERKEAQDMLNHSEKEKNNL  137 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444445556777777777777777777766666665544       4456677777777776666554443

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=81.43  E-value=3.6  Score=22.87  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSS   71 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l   71 (145)
                      +..|+.+|++.+.||-+|..++..+
T Consensus         3 vaqlekevaqaeaenyqleqevaql   27 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQL   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3456666666666666665555544

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=81.30  E-value=1.9  Score=26.88  Aligned_cols=30  Identities=23%  Similarity=0.217  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           67 NIDSSVQRYVEMESANNILRVQAMELTDRL   96 (145)
Q Consensus        67 ~~~~l~~~~~~l~~EN~~Lra~~~~L~~rl   96 (145)
                      .+..|...+..|+.||..|+.++..|...+
T Consensus        23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A           23 YVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355666667778889998888888877543

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=81.04  E-value=2.8  Score=23.03  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           47 MEDLVNEINHLESANAMLKQNIDSSV   72 (145)
Q Consensus        47 l~eLe~~v~~L~~eN~~L~~~~~~l~   72 (145)
                      ++.|..-++.|+.||.+|+.++..+-
T Consensus         1 mdqlnallasleaenkqlkakveell   26 (31)
T 1p9i_A            1 MDQLNALLASLEAENKQLKAKVEELL   26 (31)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788899999999998887653

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=80.95  E-value=2  Score=28.84  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 032187           45 KQMEDLVNEINHLESANAMLKQ   66 (145)
Q Consensus        45 ~~l~eLe~~v~~L~~eN~~L~~   66 (145)
                      .++.+|+.++.+|+.||.-|+.
T Consensus        22 e~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           22 EQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666654

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=80.84  E-value=5.4  Score=27.15  Aligned_cols=29  Identities=17%  Similarity=0.255  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           59 SANAMLKQNIDSSVQRYVEMESANNILRV   87 (145)
Q Consensus        59 ~eN~~L~~~~~~l~~~~~~l~~EN~~Lra   87 (145)
                      .||..|...+..+...+..+..+|..|+.
T Consensus        46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e   74 (83)
T 1uii_A           46 KENEKLHKEIEQKDNEIARLKKENKELAE   74 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777777666656566666665554

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=80.44  E-value=10  Score=26.75  Aligned_cols=13  Identities=46%  Similarity=0.767  Sum_probs=7.8

Q ss_pred             ChHHHHHHHHHHh
Q 032187           20 NVDERKRKRMISN   32 (145)
Q Consensus        20 ~~deRr~rR~~sN   32 (145)
                      ..+||=+|-|++|
T Consensus         6 EvEEKyrKAMVsn   18 (103)
T 4h22_A            6 EVEEKYKKAMVSN   18 (103)
T ss_dssp             --CCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3466667777776

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=80.41  E-value=3.6  Score=23.49  Aligned_cols=29  Identities=14%  Similarity=0.173  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032187           68 IDSSVQRYVEMESANNILRVQAMELTDRL   96 (145)
Q Consensus        68 ~~~l~~~~~~l~~EN~~Lra~~~~L~~rl   96 (145)
                      .+.|..+...+..+|..|..++..|+.-|
T Consensus         3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll   31 (34)
T 2oxj_A            3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV   31 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34556667777888888888877776544

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=80.14  E-value=4.9  Score=26.66  Aligned_cols=14  Identities=21%  Similarity=0.318  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHHH
Q 032187           83 NILRVQAMELTDRL   96 (145)
Q Consensus        83 ~~Lra~~~~L~~rl   96 (145)
                      ..|+.+...|..+|
T Consensus        64 ~~L~~e~~~L~~~L   77 (80)
T 1nlw_A           64 DQLQREQRHLKRQL   77 (80)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	93.82
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	89.17

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.82  E-value=0.013  Score=37.72  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=22.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032187           24 RKRKRMISNRESARRSRMKKQKQMED   49 (145)
Q Consensus        24 Rr~rR~~sNReSArrSR~RKq~~l~e   49 (145)
                      +-.||.=+|+.+|+.||.||-...++
T Consensus        48 rDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          48 RKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            35688999999999999999877654

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=89.17  E-value=1.5  Score=28.56  Aligned_cols=75  Identities=13%  Similarity=0.224  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCcCCCCCC
Q 032187           46 QMEDLVNEINHLESANAMLKQNIDSSVQRYVEME-SANNILRVQAMELTDRLRSLNSVLQIWA-EISGINVEIPEIP  120 (145)
Q Consensus        46 ~l~eLe~~v~~L~~eN~~L~~~~~~l~~~~~~l~-~EN~~Lra~~~~L~~rl~~l~~i~~~~~-~~~g~~~~~~~~~  120 (145)
                      .+-+|..+...+..+...|+.+.+.+...+.... .+...|.+++..|..++..+..-+..+. ....+...+|.+|
T Consensus        29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~  105 (110)
T d1seta1          29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP  105 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3444444555555555555555544444432221 2334455555555555555554444432 1222345566655