Citrus Sinensis ID: 032209

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVSVKACGNS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MDVVSQLQKQFIDFSSSlyregyvddqfsqlhklqdesspDFVVEVASLFFDDAEKLINSMARALeqpcvdfkqvdshvhqlkgssssigalRVKNVCIAFRSFCdaqnregcmRCLQQVSHEYTMLKSKLQTLFRVSVKACGNS
Flexible Loop (DISEMBL)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQlkgssssigalrVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSklqtlfrvsvkacgns
Low Complexity Region (SEG)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVSVKACGNS
Disordered region (IsUnstruct)
*********QFIDFSSSLYREGYVDDQFSQLH*******PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVSVKA****
Disordered Region (DISOPRED)
*********QFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC*****EGCMRCLQQVSHEYTMLKSKLQTLFRVSVKAC***
Disordered Region (DISEMBL)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVSVKACGNS
Disordered Region (DISPRO)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVSVKACG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVSVKACGNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q8L9T7	157	Histidine-containing phos	yes	no	0.931	0.859	0.691	7e-50
Q9SAZ5	155	Histidine-containing phos	no	no	0.931	0.870	0.625	6e-44
Q9ZNV8	156	Histidine-containing phos	no	no	0.931	0.865	0.595	2e-42
Q9ZNV9	154	Histidine-containing phos	no	no	0.937	0.883	0.583	1e-37
Q6VAK4	149	Histidine-containing phos	no	no	0.903	0.879	0.477	9e-31
Q9LU15	127	Histidine-containing phos	no	no	0.813	0.929	0.483	2e-30
Q9SSC9	154	Histidine-containing phos	no	no	0.924	0.870	0.451	8e-21
O94321	295	Multistep phosphorelay re	yes	no	0.6	0.294	0.303	4e-06

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score =  195 bits (496), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 115/136 (84%), Gaps = 1/136 (0%)

Query: 3   VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
           VV+QLQ+QF D+  SLY++G++D+QFS+L KLQDE +PDFV EV SLFFDD  KLIN+M+
Sbjct: 5   VVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMS 64

Query: 63  RALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVS 121
            +LE+P  VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+  CD QNREGC+RCLQQV 
Sbjct: 65  ISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVD 124

Query: 122 HEYTMLKSKLQTLFRV 137
           +EY MLK+KLQ LF +
Sbjct: 125 YEYKMLKTKLQDLFNL 140

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score =  176 bits (445), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 109/136 (80%), Gaps = 1/136 (0%)

Query: 3   VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
           +++QLQ++F DF+ SLY +G++DDQF++L KLQDE SPDFV EV +LFF+D EKLI++MA
Sbjct: 4   LIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMA 63

Query: 63  RALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVS 121
           RAL+Q   VDFK V S VHQLKGSSSS+GA RVK +C+  +  CD+QN EGC+RCLQQV 
Sbjct: 64  RALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVD 123

Query: 122 HEYTMLKSKLQTLFRV 137
            EY  LK+KLQ LF +
Sbjct: 124 IEYKTLKAKLQDLFNL 139

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 110/136 (80%), Gaps = 1/136 (0%)

Query: 3   VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
           +++QLQ+QF D++ SLY++G++DDQF++L KLQD+ SPDFV EV SLFF+D  KLI++MA
Sbjct: 4   LIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMA 63

Query: 63  RALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVS 121
           RAL+    VDF QV + VHQLKGSSSS+GA RVK +C++F+  C+A+N EGC+RCLQQV 
Sbjct: 64  RALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVD 123

Query: 122 HEYTMLKSKLQTLFRV 137
            EY  LK+KLQ +F +
Sbjct: 124 IEYKALKTKLQDMFNL 139

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 108/137 (78%), Gaps = 1/137 (0%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+V Q QK   D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N 
Sbjct: 1   MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           ++ +L+Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E C RCLQQV
Sbjct: 60  LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQV 119

Query: 121 SHEYTMLKSKLQTLFRV 137
             EY ++K++L+TLF++
Sbjct: 120 KQEYYLVKNRLETLFKL 136

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score =  132 bits (331), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 94/132 (71%), Gaps = 1/132 (0%)

Query: 7   LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARAL 65
           L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A  L
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65

Query: 66  EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYT 125
           EQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+GC+  L  V +++ 
Sbjct: 66  EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125

Query: 126 MLKSKLQTLFRV 137
            L++K QT+ ++
Sbjct: 126 DLRNKFQTMLQL 137

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 89/118 (75%)

Query: 21  EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80
           +GY+D+QF +L +LQD+++P+FV EV++L+F D+ +LIN++ +ALE+   DF ++DS++H
Sbjct: 9   QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68

Query: 81  QLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS 138
           Q KGSS+SIGA +VK  C  FR +C A N EGC+R  QQ+  E++ L+ KL+  F+ S
Sbjct: 69  QFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQAS 126

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 96/135 (71%), Gaps = 1/135 (0%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
           V +LQ       +SL+ +G +D+QF QL +LQDE+SP+FV +V +++FD++EKL+ ++  
Sbjct: 6   VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65

Query: 64  A-LEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSH 122
             +++   D+K++  H++QL GSSSSIGA RV+NVC+AFRS  +  NR GC+R L+ V H
Sbjct: 66  LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEH 125

Query: 123 EYTMLKSKLQTLFRV 137
           EY  LK+ +  LF++
Sbjct: 126 EYHYLKNMMHELFQL 140

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 28  FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
           F QL ++ D+   +F   +   +F+ AE  I  + +ALE    D K++ S  H LKGSS+
Sbjct: 171 FDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALE--AKDLKKLSSLGHFLKGSSA 228

Query: 88  SIGALRVKNVCIAFRSFCDAQNREGCMRC 116
            +G  +++ VC   +++   ++R+G M+ 
Sbjct: 229 VLGLTKMRKVCERIQNYGSLRSRDGVMKL 257

Binds to the msc4 response regulator which is part of a multistep phosphorelay system that transmits oxidative stress signals to the spc1 MAPK cascade.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
224140391	152	histidine phosphotransfer protein [Popul	1.0	0.953	0.748	9e-59
52673260	152	putative histidine-containing phosphotra	1.0	0.953	0.741	2e-58
52673258	152	putative histidine-containing phosphotra	1.0	0.953	0.734	3e-58
255567590	152	Histidine-containing phosphotransfer pro	0.944	0.901	0.751	9e-57
224090945	152	histidine phosphotransfer protein [Popul	1.0	0.953	0.710	1e-56
52673254	152	putative histidine-containing phosphotra	1.0	0.953	0.703	2e-56
359479780	151	PREDICTED: histidine-containing phosphot	0.979	0.940	0.687	1e-53
298103704	152	putative histidine phosphotransfer prote	1.0	0.953	0.680	6e-53
388511671	152	unknown [Lotus japonicus]	1.0	0.953	0.625	1e-50
225451088	150	PREDICTED: histidine-containing phosphot	1.0	0.966	0.619	1e-50

>gi|224140391|ref|XP_002323566.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222868196|gb|EEF05327.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 128/147 (87%), Gaps = 2/147 (1%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MDVVSQLQ+Q  DF + LYREG+VDDQF+QL KLQDESSPDFV+EV SLFF+D EKL+N+
Sbjct: 1   MDVVSQLQRQLADFLAPLYREGFVDDQFTQLQKLQDESSPDFVMEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R+KNVCIAF++FC+AQNREGC+RCLQQV
Sbjct: 61  MAKALEQQVVDFKQVDSHVHQLKGSSSSIGAARIKNVCIAFKTFCEAQNREGCLRCLQQV 120

Query: 121 SHEYTMLKSKLQTLFRVS--VKACGNS 145
           +HEYT LK+ LQTLF +   + A G S
Sbjct: 121 NHEYTQLKANLQTLFTLERQIVAAGGS 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52673260|emb|CAH56502.1| putative histidine-containing phosphotransfer protein 3b [Populus x canadensis]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 128/147 (87%), Gaps = 2/147 (1%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MDV+SQLQ+Q  DF + LYREG+VDDQF+QL KLQDESSPDFV+EV SLFF+D EKL+N+
Sbjct: 1   MDVLSQLQRQLADFLAPLYREGFVDDQFTQLQKLQDESSPDFVMEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R+KNVCIAF++FC+AQNREGC+RCLQQV
Sbjct: 61  MAKALEQQVVDFKQVDSHVHQLKGSSSSIGAARIKNVCIAFKTFCEAQNREGCLRCLQQV 120

Query: 121 SHEYTMLKSKLQTLFRVS--VKACGNS 145
           +HEYT LK+ LQTLF +   + A G S
Sbjct: 121 NHEYTQLKANLQTLFTLERQIVAAGGS 147

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52673258|emb|CAH56501.1| putative histidine-containing phosphotransfer protein 3a [Populus x canadensis]

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 128/147 (87%), Gaps = 2/147 (1%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MDVVSQLQ+Q  DF + LYREG+VDDQF+QL KLQDESSPDFV+EV SLFF+D EKL+++
Sbjct: 1   MDVVSQLQRQLADFLAPLYREGFVDDQFTQLQKLQDESSPDFVIEVVSLFFEDCEKLVSN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R+KNVC+AF++FC+AQNREGC+RCLQQV
Sbjct: 61  MAKALEQQVVDFKQVDSHVHQLKGSSSSIGAARIKNVCVAFKTFCEAQNREGCLRCLQQV 120

Query: 121 SHEYTMLKSKLQTLFRVS--VKACGNS 145
           +HEYT LK+ LQTLF +   + A G S
Sbjct: 121 NHEYTQLKANLQTLFTLERQIVAAGGS 147

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567590|ref|XP_002524774.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223535958|gb|EEF37617.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  224 bits (571), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 103/137 (75%), Positives = 123/137 (89%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD++SQ Q+   DF++SLYREGYVDDQF+QL KLQDESSPDFV+EVASLFF+D EKL+N+
Sbjct: 1   MDLISQWQRSIADFTASLYREGYVDDQFTQLQKLQDESSPDFVMEVASLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           MARALE   VDFKQVDSHVHQLKGSSSS+GA R+KNVCIAFR++C++Q+REGC+RCLQQV
Sbjct: 61  MARALEPRAVDFKQVDSHVHQLKGSSSSMGAARIKNVCIAFRTYCESQDREGCLRCLQQV 120

Query: 121 SHEYTMLKSKLQTLFRV 137
           + EY  LK KLQTLFR+
Sbjct: 121 NQEYAQLKIKLQTLFRL 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090945|ref|XP_002309127.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222855103|gb|EEE92650.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 127/145 (87%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+++QLQ+Q+ DF++ LY EG+VDDQF+QL KLQDESSPDFVVEV SLFF+D EKL+N+
Sbjct: 1   MDLLNQLQRQYTDFTTLLYHEGFVDDQFTQLQKLQDESSPDFVVEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R+KNVCIAF++FC+AQNREGC+RCLQQV
Sbjct: 61  MAKALEQQDVDFKQVDSHVHQLKGSSSSIGAARIKNVCIAFKTFCEAQNREGCLRCLQQV 120

Query: 121 SHEYTMLKSKLQTLFRVSVKACGNS 145
           +HE+T LK+ LQ+LF +  +   N 
Sbjct: 121 NHEHTQLKTNLQSLFTLERQIVANG 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52673254|emb|CAH56499.1| putative histidine-containing phosphotransfer protein 1 [Populus x canadensis]

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 128/145 (88%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+++QLQ+Q+ DF++ LY+EG+VDDQF+QL KLQDESSPDFVVEV SLFF+D EKL+N+
Sbjct: 1   MDLLNQLQRQYTDFTTLLYQEGFVDDQFTQLQKLQDESSPDFVVEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           MA+ALEQ  VDFK+VDSHVHQLKGSSSSIGA R+KNVCIAF++FC+AQNREGC+RCLQQV
Sbjct: 61  MAKALEQQDVDFKRVDSHVHQLKGSSSSIGAARIKNVCIAFKTFCEAQNREGCLRCLQQV 120

Query: 121 SHEYTMLKSKLQTLFRVSVKACGNS 145
           +HE+T LK+ LQ+LF +  +   N 
Sbjct: 121 NHEHTQLKTNLQSLFTLERQIVANG 145

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479780|ref|XP_002272153.2| PREDICTED: histidine-containing phosphotransfer protein 5-like [Vitis vinifera] gi|296086667|emb|CBI32302.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/144 (68%), Positives = 124/144 (86%), Gaps = 2/144 (1%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
           V QLQ+QF D+++SL+REG++DDQF+QL KLQDE++PDFV EV SLFFDD+EKL+N+MA+
Sbjct: 3   VGQLQRQFTDYTASLFREGFLDDQFTQLQKLQDENNPDFVFEVVSLFFDDSEKLVNNMAK 62

Query: 64  ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHE 123
           ALEQ  V+FKQVD+HVHQ KGSSSSIGA RVKNVC+ FR+FC+ QN EGC RCLQQ+ HE
Sbjct: 63  ALEQQTVEFKQVDAHVHQFKGSSSSIGAHRVKNVCVTFRNFCEQQNIEGCKRCLQQLRHE 122

Query: 124 YTMLKSKLQTLFRVS--VKACGNS 145
           Y++LKSKL+TLFR+   + A G S
Sbjct: 123 YSLLKSKLETLFRLEQQIIAAGGS 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298103704|emb|CBM42553.1| putative histidine phosphotransfer protein 5 [Populus x canadensis]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 100/147 (68%), Positives = 125/147 (85%), Gaps = 2/147 (1%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+++QL++Q  DFS+ LYREG+VDDQF+QL KLQDESSP FVVEV SLFF+D EKL+N+
Sbjct: 1   MDLLNQLRRQIADFSAFLYREGFVDDQFTQLQKLQDESSPGFVVEVVSLFFEDCEKLVNN 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           MA+ALEQ  VDFKQVDSHVHQLKGSSSSIGA R++NVCIAF+++C+ QNR+GC+RCLQQV
Sbjct: 61  MAKALEQQIVDFKQVDSHVHQLKGSSSSIGAARIQNVCIAFKTYCEGQNRDGCVRCLQQV 120

Query: 121 SHEYTMLKSKLQTLFRVS--VKACGNS 145
           +HE   LK+ LQ LF++   + A G S
Sbjct: 121 NHECIQLKNNLQALFKLEQQIVAAGGS 147

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511671|gb|AFK43897.1| unknown [Lotus japonicus]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/147 (62%), Positives = 122/147 (82%), Gaps = 2/147 (1%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD V QLQ++  +  ++++REG++DDQFSQL KLQDE+SPDFV+EV ++FFDD+E L+NS
Sbjct: 1   MDHVIQLQRKLREHETAMFREGFLDDQFSQLQKLQDETSPDFVIEVVTMFFDDSENLLNS 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           MARALEQ  VDFKQ+D+HVHQ KGSS+S+GA RVKN+C+ FR+FC+ QN EGC+RCLQQ+
Sbjct: 61  MARALEQVPVDFKQIDAHVHQYKGSSASVGAARVKNLCVPFRNFCETQNLEGCVRCLQQL 120

Query: 121 SHEYTMLKSKLQTLFRV--SVKACGNS 145
            HEY++LK+  Q LFR+   +KA G S
Sbjct: 121 QHEYSLLKNNFQYLFRLQQEIKAAGGS 147

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451088|ref|XP_002265307.1| PREDICTED: histidine-containing phosphotransfer protein 1 [Vitis vinifera] gi|298205016|emb|CBI34323.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 126/147 (85%), Gaps = 2/147 (1%)

Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD V QLQ+Q +D+++ L++EG+++DQF+QL +LQDE++PDFVVEV SLFF+D+E+L+N 
Sbjct: 1   MDGVVQLQRQLLDYTTQLFQEGFLNDQFTQLQQLQDETNPDFVVEVVSLFFEDSERLLNE 60

Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           +A  L+Q  +DF++VDSHVHQLKGSSSSIGA RV+NVCIAFR+FCDAQN EGC++CLQQV
Sbjct: 61  LANTLDQQSIDFRKVDSHVHQLKGSSSSIGAQRVQNVCIAFRNFCDAQNTEGCLKCLQQV 120

Query: 121 SHEYTMLKSKLQTLFRVS--VKACGNS 145
            +EY ++K+KL+TLF++   + A G S
Sbjct: 121 KNEYALVKNKLETLFQLEQQILAAGGS 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.931	0.859	0.691	6.9e-47
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	0.944	0.883	0.625	3.2e-42
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	0.944	0.878	0.597	9.6e-41
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.937	0.883	0.583	1.2e-40
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.924	0.870	0.459	7.1e-29
TAIR|locus:504955364	167	AT4G04402 "AT4G04402" [Arabido	0.8	0.694	0.433	8.6e-17
POMBASE|SPBC725.02	295	mpr1 "histidine-containing res	0.703	0.345	0.283	7.3e-08
UNIPROTKB|G4MTL0	135	MGG_07173 "Uncharacterized pro	0.682	0.733	0.300	2.9e-07
ASPGD|ASPL0000046660	172	ypdA [Emericella nidulans (tax	0.572	0.482	0.317	3.8e-07
UNIPROTKB|Q884X1	118	PSPTO_1965 "Hpt domain protein	0.682	0.838	0.254	5e-05

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 94/136 (69%), Positives = 115/136 (84%)

Query:     3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMA 62
             VV+QLQ+QF D+  SLY++G++D+QFS+L KLQDE +PDFV EV SLFFDD  KLIN+M+
Sbjct:     5 VVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMS 64

Query:    63 RALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVS 121
              +LE+P  VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+  CD QNREGC+RCLQQV 
Sbjct:    65 ISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVD 124

Query:   122 HEYTMLKSKLQTLFRV 137
             +EY MLK+KLQ LF +
Sbjct:   125 YEYKMLKTKLQDLFNL 140

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 87/139 (62%), Positives = 111/139 (79%)

Query:     1 MD-VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLIN 59
             MD +++QLQ++F DF+ SLY +G++DDQF++L KLQDE SPDFV EV +LFF+D EKLI+
Sbjct:     1 MDTLIAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLIS 60

Query:    60 SMARALEQPC-VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQ 118
             +MARAL+Q   VDFK V S VHQLKGSSSS+GA RVK +C+  +  CD+QN EGC+RCLQ
Sbjct:    61 NMARALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQ 120

Query:   119 QVSHEYTMLKSKLQTLFRV 137
             QV  EY  LK+KLQ LF +
Sbjct:   121 QVDIEYKTLKAKLQDLFNL 139

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 83/139 (59%), Positives = 112/139 (80%)

Query:     1 MD-VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLIN 59
             MD +++QLQ+QF D++ SLY++G++DDQF++L KLQD+ SPDFV EV SLFF+D  KLI+
Sbjct:     1 MDALIAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLIS 60

Query:    60 SMARALEQP-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQ 118
             +MARAL+    VDF QV + VHQLKGSSSS+GA RVK +C++F+  C+A+N EGC+RCLQ
Sbjct:    61 NMARALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQ 120

Query:   119 QVSHEYTMLKSKLQTLFRV 137
             QV  EY  LK+KLQ +F +
Sbjct:   121 QVDIEYKALKTKLQDMFNL 139

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 80/137 (58%), Positives = 108/137 (78%)

Query:     1 MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
             MD+V Q QK   D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N 
Sbjct:     1 MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59

Query:    61 MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
             ++ +L+Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E C RCLQQV
Sbjct:    60 LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQV 119

Query:   121 SHEYTMLKSKLQTLFRV 137
               EY ++K++L+TLF++
Sbjct:   120 KQEYYLVKNRLETLFKL 136

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 62/135 (45%), Positives = 96/135 (71%)

Query:     4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
             V +LQ       +SL+ +G +D+QF QL +LQDE+SP+FV +V +++FD++EKL+ ++  
Sbjct:     6 VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65

Query:    64 AL-EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSH 122
              L ++   D+K++  H++QL GSSSSIGA RV+NVC+AFRS  +  NR GC+R L+ V H
Sbjct:    66 LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEH 125

Query:   123 EYTMLKSKLQTLFRV 137
             EY  LK+ +  LF++
Sbjct:   126 EYHYLKNMMHELFQL 140

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 55/127 (43%), Positives = 74/127 (58%)

Query:    22 GYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPC--VDFKQ----- 74
             G++DDQF++L KLQD+ SPDFV EV SLFF+D  KLI++MARAL++    VDF Q     
Sbjct:    24 GFLDDQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQMKLFS 83

Query:    75 ---VDSHVHQLKGSSSSIGALR-VKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSK 130
                V   V   +GS   + A R +  + I        + R   +RCLQQV  EY  L +K
Sbjct:    84 CTLVFDTVLVRRGSKLCVLASRNIAKLRITKGKLVQHRLRTHRLRCLQQVDIEYKTLTTK 143

Query:   131 LQTLFRV 137
             LQ +F +
Sbjct:   144 LQDMFNL 150

GO:0005575 "cellular_component" evidence=ND

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS

POMBASE|SPBC725.02 mpr1 "histidine-containing response regulator phosphotransferase Mpr1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 128 (50.1 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 30/106 (28%), Positives = 57/106 (53%)

Query:    12 IDFSSSLYREGYVDDQ--FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPC 69
             + F   L ++  + D   F QL ++ D+   +F   +   +F+ AE  I  + +ALE   
Sbjct:   153 MSFEDELIQDKQLIDHSVFDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALEAK- 211

Query:    70 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMR 115
              D K++ S  H LKGSS+ +G  +++ VC   +++   ++R+G M+
Sbjct:   212 -DLKKLSSLGHFLKGSSAVLGLTKMRKVCERIQNYGSLRSRDGVMK 256

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0034599 "cellular response to oxidative stress" evidence=IMP

UNIPROTKB|G4MTL0 MGG_07173 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/103 (30%), Positives = 55/103 (53%)

Query:    23 YVDDQ-FSQLHKL-QDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80
             +VD   F Q+ ++ +DE+  DF   +   FF+ AE+    M +AL+    D K++ S  H
Sbjct:     7 HVDSTTFEQILEMDEDEAERDFSKPLVMGFFEQAEETFEKMDKALKDR--DLKELSSLGH 64

Query:    81 QLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHE 123
              LKGSS+++G  +VK+ C   + + +    +G     + V +E
Sbjct:    65 FLKGSSATLGFTKVKDSCQVIQQYGNKLKLDGTEEPSEDVCYE 107

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000046660 ypdA [Emericella nidulans (taxid:162425)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 27/85 (31%), Positives = 44/85 (51%)

Query:    28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
             F Q+ ++ DE   +F   +   FFD AE   + M +ALE       ++ S  H LKGSS+
Sbjct:    35 FEQILEMDDEDEHEFSQGIVYGFFDQAESTFDKMEKALEDK--KLSELSSLGHFLKGSSA 92

Query:    88 SIGALRVKNVCIAFRSFCDAQNREG 112
             +IG  +VK+ C   + +   ++  G
Sbjct:    93 TIGLTKVKDACEKIQHYGAGKDESG 117

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q884X1 PSPTO_1965 "Hpt domain protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 26/102 (25%), Positives = 51/102 (50%)

Query:    28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
             +S L  LQ+    ++   +  +F  D+E+ +  +  A+E   +D +++    H  KGSSS
Sbjct:     7 YSVLSALQEVMEDEYPT-LLDVFLKDSEQRLAQLRLAVETGNLDLQELSLTAHSFKGSSS 65

Query:    88 SIGALRVKNVCIAFRSFCDAQNREGCMRCL-QQVSHEYTMLK 128
             ++GAL++  +C         QN    +R L  ++  EY  ++
Sbjct:    66 NMGALQLSQLCHQLEERA-RQNDSSDLRDLIGRIGSEYLTVR 106


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.132   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      145       145   0.00071  103 3  11 22  0.40    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  129 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.67u 0.10s 14.77t   Elapsed:  00:00:01
  Total cpu time:  14.67u 0.10s 14.77t   Elapsed:  00:00:01
  Start:  Fri May 10 21:09:26 2013   End:  Fri May 10 21:09:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L9T7	AHP5_ARATH	No assigned EC number	0.6911	0.9310	0.8598	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
pfam01627	87	pfam01627, Hpt, Hpt domain	1e-13
cd00088	94	cd00088, HPT, Histidine Phosphotransfer domain, in	3e-12
COG2198	122	COG2198, ArcB, FOG: HPt domain [Signal transductio	1e-04

>gnl|CDD|216615 pfam01627, Hpt, Hpt domain

 Score = 61.6 bits (150), Expect = 1e-13
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 45  EVASLFFDDAEKLINSMARALEQPCV-DFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRS 103
           E+  LF ++A +L+  + +AL      D + +    H LKGS+ S+G   +  +      
Sbjct: 1   ELLELFLEEAPELLEQLEQALLALEAEDLEALFRAAHTLKGSAGSLGLPALAELAHELED 60

Query: 104 FCDAQNREGCM-RCLQQVSHEYTMLKS 129
              A      + + L ++  E   L++
Sbjct: 61  LLRAGRDGELLLQALDELKDELEALRA 87

The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072). Length = 87

>gnl|CDD|238041 cd00088, HPT, Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 45  EVASLFFDDAEKLINSMARALEQ--PCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFR 102
           E+  LF ++AE+L+  + RAL +     D  ++    H LKGS++S+G  R+  +     
Sbjct: 3   ELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQLE 62

Query: 103 SFCDAQNRE 111
              DA    
Sbjct: 63  DLLDALRDG 71

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are involved in important processes such as osmoregulation, cell growth, and differentiation; to date two-component proteins have not been identified in animals; in most prokaryotic systems, the output response is effected directly by the RR, which functions as a transcription factor while in eukaryotic systems, two-component proteins are found at the beginning of signaling pathways where they interface with more conventional eukaryotic signaling strategies such as MAP kinase and cyclic nucleotide cascades. Length = 94

>gnl|CDD|225108 COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 40  PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI 99
           PD + E+ ++F ++A   +  +  AL     D   +    H+LKGS++S+G   +  +C 
Sbjct: 22  PDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLCQ 79

Query: 100 AFRSFCDAQN-REGCMRCLQQVSHEYTMLK 128
                  +    E     + ++  E  +  
Sbjct: 80  QLEDALRSGASLEELEELIAELKDELQLDV 109

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG4747	150	consensus Two-component phosphorelay intermediate	99.84
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.66
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.64
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.5
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.43
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.33
PRK10618	894	phosphotransfer intermediate protein in two-compon	99.15
PRK11091	779	aerobic respiration control sensor protein ArcB; P	99.04
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.71
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.71
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	98.11
PRK10547	670	chemotaxis protein CheA; Provisional	97.95
PRK09959	1197	hybrid sensory histidine kinase in two-component r	97.64
PRK15347	921	two component system sensor kinase SsrA; Provision	96.99
TIGR03042	142	PS_II_psbQ_bact photosystem II protein PsbQ. This	94.77
PLN02956	185	PSII-Q subunit	92.64
PF07743	78	HSCB_C: HSCB C-terminal oligomerisation domain; In	92.04
PF13779	820	DUF4175: Domain of unknown function (DUF4175)	90.83
TIGR02302	851	aProt_lowcomp conserved hypothetical protein TIGR0	89.31
cd08323	86	CARD_APAF1 Caspase activation and recruitment doma	89.13
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	87.79
PRK01356	166	hscB co-chaperone HscB; Provisional	86.93
PF05757	202	PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); I	80.19

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.84  E-value=1.3e-19  Score=130.82  Aligned_cols=134  Identities=57%  Similarity=0.985  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209            4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (145)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (145)
                      |-+++..+.+.+.+++++|++|++|.+|.+|.++..|+|+.+++..|.+++.+.+..++.++..+- |+..+....|.+|
T Consensus         5 i~~~q~~~~d~~~sl~~qgild~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~-d~k~~~~~~hqlk   83 (150)
T KOG4747|consen    5 IISMQRDVSDYTKSLFDQGILDSQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCER-DFKKLGSHVHQLK   83 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHcc
Confidence            778999999999999999999999999999999999999999999999999999999999998863 9999999999999


Q ss_pred             hhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209           84 GSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS  138 (145)
Q Consensus        84 Gss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~  138 (145)
                      |+|..+||.++...|..+-..|+.++.+.....+++++-++..+...|+.|++++
T Consensus        84 gssssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~  138 (150)
T KOG4747|consen   84 GSSSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLE  138 (150)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.66  E-value=1.6e-15  Score=100.17  Aligned_cols=83  Identities=22%  Similarity=0.423  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHH---HHHHHH
Q 032209           45 EVASLFFDDAEKLINSMARAL---EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREG---CMRCLQ  118 (145)
Q Consensus        45 ~ll~~F~~~~~~~l~~L~~a~---~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~---~~~~l~  118 (145)
                      +++..|+++.++.+..|++++   ..+  |++.+...+|+|||+++++|+..+...|..||..++.++.+.   +...+.
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~~~--d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~   78 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALEQE--DWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLD   78 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSHHC--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            589999999999999999999   888  999999999999999999999999999999999999987776   445555


Q ss_pred             HHHHHHHHHHH
Q 032209          119 QVSHEYTMLKS  129 (145)
Q Consensus       119 ~L~~~~~~l~~  129 (145)
                      .+...+.++.+
T Consensus        79 ~l~~~l~~l~~   89 (90)
T PF01627_consen   79 ELEAMLEQLRQ   89 (90)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            55555555443

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.64  E-value=5.7e-15  Score=104.36  Aligned_cols=96  Identities=22%  Similarity=0.390  Sum_probs=86.6

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhh-cCHHHHHH
Q 032209           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDA-QNREGCMR  115 (145)
Q Consensus        37 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~-~~~~~~~~  115 (145)
                      +++++++.+++..|+++.++++..+..++..+  |+..+.+.+|+|||+|+++|+..|...|.+||..++. +..+....
T Consensus        19 g~~~~~~~~ll~~f~~~~~~~l~~l~~~l~~~--d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~lE~~~~~~~~~~~~~~   96 (122)
T COG2198          19 GGDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLGLPALAQLCQQLEDALRSGASLEELEE   96 (122)
T ss_pred             CCChHHHHHHHHHHHHHhHHHHHHHHHHHhcC--CcHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            46799999999999999999999999999999  9999999999999999999999999999999999998 67888888


Q ss_pred             HHHHHHHH--HHHHHHHHHHH
Q 032209          116 CLQQVSHE--YTMLKSKLQTL  134 (145)
Q Consensus       116 ~l~~L~~~--~~~l~~~L~~~  134 (145)
                      .+.++.+.  +......+..+
T Consensus        97 ~i~~l~~~~~~~~~~~~~~~~  117 (122)
T COG2198          97 LIAELKDELQLDVLALELLTY  117 (122)
T ss_pred             HHHHHHHHhcchHHHHHHHHH
Confidence            99999988  55555555444

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.50  E-value=6.4e-14  Score=92.67  Aligned_cols=85  Identities=21%  Similarity=0.331  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 032209           45 EVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEY  124 (145)
Q Consensus        45 ~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~~  124 (145)
                      +++..|+++.+..+..|..+...+  |+..+...+|+|||+|+++|+..|..+|..+|..++...... ......+...+
T Consensus         2 e~~~~f~~~~~~~l~~l~~~~~~~--~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~~~~-~~~~~~l~~~~   78 (87)
T smart00073        2 EELAEFLQSLEEGLLELEKALDAQ--DVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAARSGE-VELTPDLLDLL   78 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcCHh--HHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHHcCC-CCCCHHHHHHH
Confidence            578999999999999999999888  999999999999999999999999999999999888643222 24566677777


Q ss_pred             HHHHHHHH
Q 032209          125 TMLKSKLQ  132 (145)
Q Consensus       125 ~~l~~~L~  132 (145)
                      .++.+.|.
T Consensus        79 ~~~~~~l~   86 (87)
T smart00073       79 LELVDVLK   86 (87)
T ss_pred             HHHHHHHc
Confidence            76666553

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.43  E-value=6.4e-13  Score=89.43  Aligned_cols=64  Identities=31%  Similarity=0.533  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcC
Q 032209           44 VEVASLFFDDAEKLINSMARALE----QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN  109 (145)
Q Consensus        44 ~~ll~~F~~~~~~~l~~L~~a~~----~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~  109 (145)
                      .+++..|+++.++.+..|.+++.    .+  |++.+...+|+|||+++++|+..+...|..+|.+++.+.
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~--d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~   69 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAE--DLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALR   69 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999    78  999999999999999999999999999999999998754

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.33  E-value=1.3e-11  Score=111.46  Aligned_cols=94  Identities=17%  Similarity=0.284  Sum_probs=87.6

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHH
Q 032209           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRC  116 (145)
Q Consensus        37 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~  116 (145)
                      ..+++.+.+++..|.++.+..+..|..++..+  ||..++..+|+|||+++++|+..+..+|+.||..++.++.  ....
T Consensus       875 ~~~~~~~~~~~~~f~~~~~~~~~~l~~~~~~~--d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~le~~~~~~~~--~~~~  950 (968)
T TIGR02956       875 VLGVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIKKLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGAL--ELSD  950 (968)
T ss_pred             hcCcHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcccCCc--chhH
Confidence            45788899999999999999999999999999  9999999999999999999999999999999999998876  3567


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 032209          117 LQQVSHEYTMLKSKLQTL  134 (145)
Q Consensus       117 l~~L~~~~~~l~~~L~~~  134 (145)
                      +..|+..|.++..+|+.|
T Consensus       951 ~~~l~~~~~~~~~~l~~~  968 (968)
T TIGR02956       951 IDEIKQAWQASKTALDQW  968 (968)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            899999999999999875

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=99.15  E-value=2.7e-10  Score=103.61  Aligned_cols=83  Identities=16%  Similarity=0.292  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 032209           44 VEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHE  123 (145)
Q Consensus        44 ~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~  123 (145)
                      ..++..|+++++.++..|..+..++  |+..++..||+|||+++++|+..+.++|..||..++.++..++...+.+|...
T Consensus       810 s~~~~lF~~t~~~di~~L~~~~~~~--D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~~~i~~~i~~id~~  887 (894)
T PRK10618        810 SDYYALFVDTVPDDVKRLYTEAATS--DFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDEPGIENYISDIDSF  887 (894)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence            3466899999999999999999999  99999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHH
Q 032209          124 YTMLK  128 (145)
Q Consensus       124 ~~~l~  128 (145)
                      +.++.
T Consensus       888 v~~ll  892 (894)
T PRK10618        888 VKSLL  892 (894)
T ss_pred             HHHHh
Confidence            77765

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=99.04  E-value=4.1e-09  Score=93.81  Aligned_cols=100  Identities=13%  Similarity=0.213  Sum_probs=93.3

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHH
Q 032209           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRC  116 (145)
Q Consensus        37 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~  116 (145)
                      ..++..+...+..|.+..+..+..+..++..+  |+..+...+|+|||+++++|+..+.++|+.+|.....+..+.....
T Consensus       677 ~~g~~~~~~~l~~~~~~~~~~~~~l~~~l~~~--d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~  754 (779)
T PRK11091        677 LVGPKLITDSLAVFEKMMPGYLSVLDSNLTAR--DQKGIVEEAHKIKGAAGSVGLRHLQQLAQQIQSPDLPAWWDNVQDW  754 (779)
T ss_pred             hcCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCccccHHHHHHH
Confidence            34567788999999999999999999999999  9999999999999999999999999999999998888888888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 032209          117 LQQVSHEYTMLKSKLQTLFRVS  138 (145)
Q Consensus       117 l~~L~~~~~~l~~~L~~~l~~~  138 (145)
                      +.++..+|+...+.|+.|++..
T Consensus       755 ~~~l~~~~~~~~~~~~~~~~~~  776 (779)
T PRK11091        755 VEELKNEWRHDVEVLKAWLAQA  776 (779)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998764

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.71  E-value=4.9e-07  Score=81.33  Aligned_cols=97  Identities=20%  Similarity=0.280  Sum_probs=85.6

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhc-CHHHHHH
Q 032209           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQ-NREGCMR  115 (145)
Q Consensus        37 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~-~~~~~~~  115 (145)
                      .+.++...+++..|.+..+.....+..++...  |+..+...+|++||+++++|+..+...|+.+|..++.+ ..+.+..
T Consensus       820 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~  897 (919)
T PRK11107        820 AGKPDLARDMLQMLLDFLPEVRNKVEEALAGE--DPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGTSVEDLEP  897 (919)
T ss_pred             CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCChhhHHH
Confidence            46678889999999999999999999999999  99999999999999999999999999999999999876 4566677


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032209          116 CLQQVSHEYTMLKSKLQTLF  135 (145)
Q Consensus       116 ~l~~L~~~~~~l~~~L~~~l  135 (145)
                      .+..+..++.++..+++.++
T Consensus       898 ~~~~~~~~~~~~~~~~~~~~  917 (919)
T PRK11107        898 ELLELLDEMENVARAAKKVL  917 (919)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            77777777777777777665

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.71  E-value=3.1e-07  Score=82.95  Aligned_cols=89  Identities=21%  Similarity=0.237  Sum_probs=73.0

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHH
Q 032209           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRC  116 (145)
Q Consensus        37 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~  116 (145)
                      ..+++.+.+++..|.++.+..+..+..+...+  |+..++..+|+|||+++++|+..+...|..+|.++...        
T Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~ah~lkg~~~~lg~~~l~~~~~~le~~~~~~--------  888 (914)
T PRK11466        819 LMGTEKIHEWLALFKQHALPLLDEIDIARASQ--DSEKIKRAAHQLKSSCSSLGMRQASQACAQLEQQPLSA--------  888 (914)
T ss_pred             hcCHHHHHHHHHHHHHhhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCCc--------
Confidence            34567788999999999999999999999999  99999999999999999999999999999999875422        


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032209          117 LQQVSHEYTMLKSKLQTLFR  136 (145)
Q Consensus       117 l~~L~~~~~~l~~~L~~~l~  136 (145)
                       ..+...+.+...+|+.|++
T Consensus       889 -~~~~~~~~~~~~~~~~~~~  907 (914)
T PRK11466        889 -PLPHEEITRSVAALEAWLA  907 (914)
T ss_pred             -hhHHHHHHHHHHHHHHHHH
Confidence             2233455555555555554

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.11  E-value=2.4e-05  Score=70.13  Aligned_cols=94  Identities=19%  Similarity=0.261  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HhhcCH
Q 032209           40 PDFVVEVASLFFDDAEKLINSMARALEQP---CVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNR  110 (145)
Q Consensus        40 ~~~~~~ll~~F~~~~~~~l~~L~~a~~~~---~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a---~~~~~~  110 (145)
                      .+.+.+++..|+.++++.+..|.+.+-.-   +.|   ...+.+.||+|||+||++|+..+..+|..+|..   .+.+..
T Consensus         3 ~~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~ld~~r~g~~   82 (716)
T COG0643           3 SMDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLLDALRNGEL   82 (716)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHHhcCCc
Confidence            44578899999999999999998754432   113   467789999999999999999999999999975   455554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 032209          111 EGCMRCLQQVSHEYTMLKSKLQT  133 (145)
Q Consensus       111 ~~~~~~l~~L~~~~~~l~~~L~~  133 (145)
                      +--...+..+-.+...+...++.
T Consensus        83 ~~~~~l~d~~l~~~D~l~~~~~~  105 (716)
T COG0643          83 ELTSELLDLLLEALDALEEMLDA  105 (716)
T ss_pred             cCcHHHHHHHhhhhHHHHHHHHh
Confidence            43344555554444444444444

>PRK10547 chemotaxis protein CheA; Provisional

Probab=97.95  E-value=7.4e-05  Score=66.62  Aligned_cols=64  Identities=20%  Similarity=0.401  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHh
Q 032209           43 VVEVASLFFDDAEKLINSMARALEQ---PCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCD  106 (145)
Q Consensus        43 ~~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~  106 (145)
                      +.+++..|++++.+.++.|.+.+-.   .+.|   ...+-+.+|+|||+|+++|+..+..+|..+|....
T Consensus         3 ~~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld   72 (670)
T PRK10547          3 ISDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLD   72 (670)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHH
Confidence            3478899999999999887776543   2114   46778999999999999999999999999997653

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=97.64  E-value=0.0011  Score=61.79  Aligned_cols=97  Identities=13%  Similarity=0.245  Sum_probs=78.4

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcC-HHHHHH
Q 032209           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN-REGCMR  115 (145)
Q Consensus        37 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~-~~~~~~  115 (145)
                      ..+...+.+++..+......++..+..+...+  |...++.++|++||++..+|+..+...|+++|......+ .+.+..
T Consensus      1096 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~~~~~~l~~ 1173 (1197)
T PRK09959       1096 ANDLQLMQEILMTFQHETHKDLPAAFHALEAG--DNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQ 1173 (1197)
T ss_pred             CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcCCchHHHHH
Confidence            35667789999999999999999998999999  999999999999999999999999999999998876554 445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032209          116 CLQQVSHEYTMLKSKLQTLF  135 (145)
Q Consensus       116 ~l~~L~~~~~~l~~~L~~~l  135 (145)
                      .+..+..........+..|+
T Consensus      1174 ~~~~~~~~~~~~~~~~~~~~ 1193 (1197)
T PRK09959       1174 LLNSVKEHIAELDQEIAVFC 1193 (1197)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            56666655555555555543

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=96.99  E-value=0.0044  Score=56.08  Aligned_cols=62  Identities=16%  Similarity=0.296  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHH
Q 032209           46 VASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNRE  111 (145)
Q Consensus        46 ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~  111 (145)
                      +...+.+.....+..+..++..+  |  .+...+|++||+++.+|+..+...|.++|..++.+...
T Consensus       838 l~~~~~~~l~~~~~~~~~~~~~~--~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~~  899 (921)
T PRK15347        838 LNSKLYQSLLLLLAQIEQAVENQ--E--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEIL  899 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCH--H--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCCC
Confidence            44455566677888888888888  6  99999999999999999999999999999998876433

>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ

Probab=94.77  E-value=0.46  Score=34.66  Aligned_cols=74  Identities=9%  Similarity=0.164  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhCh---------------------HHHHHHHHHHHHHHhhcCH
Q 032209           52 DDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGA---------------------LRVKNVCIAFRSFCDAQNR  110 (145)
Q Consensus        52 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa---------------------~~L~~~c~~LE~a~~~~~~  110 (145)
                      +.+.+.+.+++..+..+  ||..++...|.-   +|.++-                     ..|.+....|..+++.+|.
T Consensus        46 ~~~~~r~~eLk~lI~kk--~W~~vrn~irgp---~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA~~kd~  120 (142)
T TIGR03042        46 EAAKDRLPELASLVAKE--DWVFTRNLIHGP---MGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAARLQDG  120 (142)
T ss_pred             HHHHHhhHHHHHHHhhc--chHHHHHHHhcc---HHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            45678888999999999  999999998853   333332                     3344445555566666665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          111 EGCMRCLQQVSHEYTMLKSKLQTLFRV  137 (145)
Q Consensus       111 ~~~~~~l~~L~~~~~~l~~~L~~~l~~  137 (145)
                      ..+       ...|..+...+++|+++
T Consensus       121 ~~a-------~k~Y~~av~~~dafl~~  140 (142)
T TIGR03042       121 PQA-------QKAYQKAAADFDAYLDL  140 (142)
T ss_pred             HHH-------HHHHHHHHHHHHHHHhh
Confidence            444       44666666666666653

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.

>PLN02956 PSII-Q subunit

Probab=92.64  E-value=1.7  Score=32.96  Aligned_cols=81  Identities=11%  Similarity=0.092  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhC---------------------hHHHHHHHHHHH
Q 032209           44 VEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIG---------------------ALRVKNVCIAFR  102 (145)
Q Consensus        44 ~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lG---------------------a~~L~~~c~~LE  102 (145)
                      .+--..=+.+..+.|-.|+..+..+  +|..+....|.   .++.++                     +..|.+....|+
T Consensus        82 peeA~ar~k~~A~~l~~LK~LI~k~--~W~yvrn~LRg---p~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~~LD  156 (185)
T PLN02956         82 VEEAESGVRGHAENLLRVKALIESE--SWKEAQKALRR---SASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTKLD  156 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHc---cHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHHHHH
Confidence            3344445567778889999999999  99999998774   444444                     345666777777


Q ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHH
Q 032209          103 SFCDAQNREGCMRCLQQVSHEYTMLKS  129 (145)
Q Consensus       103 ~a~~~~~~~~~~~~l~~L~~~~~~l~~  129 (145)
                      .+++.++..++...+......|..+..
T Consensus       157 ~AAR~kd~~~a~k~Y~~tva~lD~Vl~  183 (185)
T PLN02956        157 YAARDKDETRVWEYYENIVASLDDIFS  183 (185)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence            888888877777777666666665543

>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein)

Probab=92.04  E-value=0.94  Score=29.04  Aligned_cols=45  Identities=18%  Similarity=0.289  Sum_probs=38.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q 032209           38 SSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKG   84 (145)
Q Consensus        38 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG   84 (145)
                      ++.+-+..+....-......+..|..++..+  ||+.+...+++||=
T Consensus        24 ~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~--d~~~A~~~~~kLky   68 (78)
T PF07743_consen   24 DDEAELEELKKEIEERIKELIKELAEAFDAK--DWEEAKEALRKLKY   68 (78)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHccC--cHHHHHHHHHHHHH
Confidence            5567788888888888889999999999999  99999999999863

HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.

>PF13779 DUF4175: Domain of unknown function (DUF4175)

Probab=90.83  E-value=1.9  Score=39.79  Aligned_cols=88  Identities=8%  Similarity=0.137  Sum_probs=67.7

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHH
Q 032209           36 DESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMR  115 (145)
Q Consensus        36 ~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~  115 (145)
                      .+.+.+-|.++...+.+-..+++.+|.+-...+  .-..   .-+..-+.+.+++...|.+...+||+..++|+.+++..
T Consensus       487 ~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~--~~~~---~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q  561 (820)
T PF13779_consen  487 RGASDEEIARLMQELREAMQDYMQALAEQAQRN--PQQQ---DQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQ  561 (820)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhC--cccc---cCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            355667788888888888888888887765554  1111   11222567788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 032209          116 CLQQVSHEYTMLK  128 (145)
Q Consensus       116 ~l~~L~~~~~~l~  128 (145)
                      +++++.+-++.++
T Consensus       562 ~L~qlq~mmenmq  574 (820)
T PF13779_consen  562 LLEQLQQMMENMQ  574 (820)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999888877554

>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302

Probab=89.31  E-value=3.1  Score=38.59  Aligned_cols=88  Identities=10%  Similarity=0.169  Sum_probs=67.5

Q ss_pred             hccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHH
Q 032209           35 QDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCM  114 (145)
Q Consensus        35 ~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~  114 (145)
                      +.+.+.+-|.++...+.+-..+++.+|.+-..+++ +-..     -..-+.+.+++-..|-+...+||+..++|+.+++.
T Consensus       517 ~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~-~~~~-----~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~~A~  590 (851)
T TIGR02302       517 ERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNP-QQLA-----RPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAK  590 (851)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cccc-----ccCCccccccCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34556777899999998888888888877655431 1111     11123467899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 032209          115 RCLQQVSHEYTMLK  128 (145)
Q Consensus       115 ~~l~~L~~~~~~l~  128 (145)
                      .++++|..-++.++
T Consensus       591 qlL~qlq~mmenlq  604 (851)
T TIGR02302       591 QLLSQLQQMMNNLQ  604 (851)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999888887766

Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.

>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1

Probab=89.13  E-value=2.4  Score=28.17  Aligned_cols=73  Identities=11%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 032209            3 VVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQD-ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQ   81 (145)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   81 (145)
                      +++.|+  +.+-...+...|++++.  ..+.++. ....+-...+++....-.+.-...+..++...  .+..++.+.|.
T Consensus        10 L~~dL~--v~~ild~L~~~gvlt~~--~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~--~~~~La~lL~~   83 (86)
T cd08323          10 LEKDIK--TSYIMDHMISDGVLTLD--EEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHE--GYKDLALLLHD   83 (86)
T ss_pred             HHHHcc--HHHHHHHHHhcCCCCHH--HHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CChHHHHHHhc
Confidence            345555  56677888999999965  5555554 45577789999999999999999999998876  68888888764

Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=87.79  E-value=3.5  Score=30.35  Aligned_cols=21  Identities=10%  Similarity=-0.034  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHhhcCHHHHHH
Q 032209           95 KNVCIAFRSFCDAQNREGCMR  115 (145)
Q Consensus        95 ~~~c~~LE~a~~~~~~~~~~~  115 (145)
                      ..+...|+.+...++.+.+..
T Consensus       114 ~~~~~~l~~~~~~~d~~~A~~  134 (157)
T TIGR00714       114 QTRHQLLVEQLDNQTWAAAAD  134 (157)
T ss_pred             HHHHHHHHHHHhcCCHHHHHH
Confidence            334444444444444444433

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=86.93  E-value=3.6  Score=30.61  Aligned_cols=25  Identities=16%  Similarity=0.076  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHH
Q 032209           95 KNVCIAFRSFCDAQNREGCMRCLQQ  119 (145)
Q Consensus        95 ~~~c~~LE~a~~~~~~~~~~~~l~~  119 (145)
                      ..+...|+.+...++.+.+...+.+
T Consensus       123 ~~~~~~l~~~f~~~d~~~A~~~~~~  147 (166)
T PRK01356        123 KNEIDSLKQAFEEQNLSDATIKTSK  147 (166)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3444455555555555555444433

>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=80.19  E-value=8.5  Score=29.69  Aligned_cols=76  Identities=9%  Similarity=0.072  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------hhhhhhhhC----------hHHHHHHHHHHHHHHhhcCHHH
Q 032209           51 FDDAEKLINSMARALEQPCVDFKQVDSHVHQ--------LKGSSSSIG----------ALRVKNVCIAFRSFCDAQNREG  112 (145)
Q Consensus        51 ~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~--------LKGss~~lG----------a~~L~~~c~~LE~a~~~~~~~~  112 (145)
                      +.+..+.|..++..+...  .|..+....|.        |+......+          +..|++-...|..+++..+...
T Consensus       105 ik~sa~~L~~lk~lIdk~--sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~~lf~~ie~LD~Aar~K~~~~  182 (202)
T PF05757_consen  105 IKESAKRLLSLKELIDKK--SWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLANKLFDNIEELDYAARSKDVPE  182 (202)
T ss_dssp             HHHHHHHHCCCHHHHHTT---HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence            467778889999999999  99999999886        333333332          2567778888888899888887


Q ss_pred             HHHHHHHHHHHHHHHH
Q 032209          113 CMRCLQQVSHEYTMLK  128 (145)
Q Consensus       113 ~~~~l~~L~~~~~~l~  128 (145)
                      ...++......++.+.
T Consensus       183 a~~~Y~~t~~~Ldevl  198 (202)
T PF05757_consen  183 AEKYYADTVKALDEVL  198 (202)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7776666555555544

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		1e-39
4euk_B	159	Crystal Structure Length = 159		9e-39
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		9e-32
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		1e-30

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score =  157 bits (398), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/144 (53%), Positives = 113/144 (78%), Gaps = 2/144 (1%)
Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
           V Q+++Q++D+  S++ EG++D QF QL +LQDE++P+FV EV SLFFDD+E+++  ++ 
Sbjct: 3   VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSF 62
Query: 64  ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHE 123
           A++Q  +DFK+VD+HVHQ KGSS+SIGA RVKN C+AFR+FC+ QN + C RCLQQV  E
Sbjct: 63  AVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQE 122
Query: 124 YTMLKSKLQTLFRVS--VKACGNS 145
           Y ++K+KL+TL R+   + A G S
Sbjct: 123 YLLVKNKLETLLRLEQQIVAAGGS 146

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score =  155 bits (391), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 108/137 (78%), Gaps = 1/137 (0%)
Query: 1   MDVVSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINS 60
           MD+V Q QK   D++ SL+ EG +D QF QL +LQDES+PDFV +V +LFF D+++++N 
Sbjct: 6   MDLV-QKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 64
Query: 61  MARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQV 120
           ++ +L+Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E C RCLQQV
Sbjct: 65  LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQV 124
Query: 121 SHEYTMLKSKLQTLFRV 137
             EY ++K++L+TLF++
Sbjct: 125 KQEYYLVKNRLETLFKL 141

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score =  132 bits (331), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Query: 7   LQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMARAL 65
           L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A  L
Sbjct: 6   LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 66  EQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYT 125
           EQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+GC+  L  V +++ 
Sbjct: 66  EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125
Query: 126 MLKSKLQTLFRV 137
            L++K QT+ ++
Sbjct: 126 DLRNKFQTMLQL 137

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
Query: 5   SQLQKQFIDFSSSLYREGYVDDQFSQLHKLQ-DESSPDFVVEVASLFFDDAEKLINSMAR 63
           + L++Q     SS++  G VD+QF QL  LQ D  +P FV EV +LF DDA+++I+ +A 
Sbjct: 4   AALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAA 63
Query: 64  ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHE 123
            L+QP VDF +VD++VHQLKGSS+S+GA +VK  C+ FR  C  +NR+GC+  L  V +E
Sbjct: 64  LLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVVRNE 123
Query: 124 YTMLKSKLQTLF 135
           +  L++K QT+ 
Sbjct: 124 FYDLRNKFQTML 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	8e-51
3us6_A	153	Histidine-containing phosphotransfer protein type	1e-47
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	6e-24
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	6e-15
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	2e-10
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	6e-08
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	6e-08
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	5e-07

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  158 bits (400), Expect = 8e-51
 Identities = 63/135 (46%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDES-SPDFVVEVASLFFDDAEKLINSMA 62
            + L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A
Sbjct: 3   AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 62

Query: 63  RALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSH 122
             LEQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+GC+  L  V +
Sbjct: 63  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122

Query: 123 EYTMLKSKLQTLFRV 137
           ++  L++K QT+ ++
Sbjct: 123 DFYDLRNKFQTMLQL 137

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  149 bits (378), Expect = 1e-47
 Identities = 74/134 (55%), Positives = 109/134 (81%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMAR 63
           V Q+++Q++D+  S++ EG++D QF QL +LQDE++P+FV EV SLFFDD+E+++  ++ 
Sbjct: 3   VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSF 62

Query: 64  ALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHE 123
           A++Q  +DFK+VD+HVHQ KGSS+SIGA RVKN C+AFR+FC+ QN + C RCLQQV  E
Sbjct: 63  AVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQE 122

Query: 124 YTMLKSKLQTLFRV 137
           Y ++K+KL+TL R+
Sbjct: 123 YLLVKNKLETLLRL 136

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 90.2 bits (223), Expect = 6e-24
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 16  SSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQV 75
           S++  E       +++  + D+   DF   +   F D A+     M R L+    +  ++
Sbjct: 2   STIPSEIINWTILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGE-KNLTEL 59

Query: 76  DSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN 109
           D+  H LKGSS+++G  R+  VC   ++      
Sbjct: 60  DNLGHFLKGSSAALGLQRIAWVCERIQNLGRKME 93

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 65.6 bits (160), Expect = 6e-15
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 2/107 (1%)

Query: 29  SQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSS 88
            ++ +L  E   D V  +  +F  + +  I ++             +    H LK S++S
Sbjct: 15  QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAAS 72

Query: 89  IGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLF 135
            GA R+    IA      A   +       ++     + +   ++  
Sbjct: 73  FGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWT 119

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 14/104 (13%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 29  SQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSS 88
             L +  +   P  + +  ++F       ++ +   L     D K +    H++KG++ S
Sbjct: 15  PMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGS 72

Query: 89  IGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQ 132
           +G   ++ +    +S       +     ++++  E+      L+
Sbjct: 73  VGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLK 116

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli} Length = 123

 Score = 47.5 bits (113), Expect = 6e-08
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98
           D   ++  +  D   ++ N +   L     + + +   +H+L GS    G  R+KN+C
Sbjct: 28 TDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLC 84

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Length = 119

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 40  PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI 99
            +  +E+  +  D   + +  +  AL Q   D   + S +H+L G+S   G    + +C 
Sbjct: 19  SNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLCQ 76

Query: 100 AFRSFC-DAQNREGCMRCLQQVSHEYTMLKSKLQTL 134
              S        E     + ++  E T ++S ++ +
Sbjct: 77  EIESALKRQTPVEDLEPEILELLDELTKVESAVKQV 112

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6 Length = 113

 Score = 45.0 bits (106), Expect = 5e-07
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVH 80
           G VD  F+ L           V EV +LF + A      +                 VH
Sbjct: 8  SGAVD--FAYLEGFA-AGDFAVVDEVLALFREQAALWAPMLDP-------THPGWKDAVH 57

Query: 81 QLKGSSSSIGALRVKNVC 98
           +KG++  +GA  +  VC
Sbjct: 58 TVKGAARGVGAFNLGEVC 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
3us6_A	153	Histidine-containing phosphotransfer protein type	100.0
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	99.97
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.91
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.86
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.83
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.8
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.73
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.7
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.66
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.54
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.39
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.34
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.33
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	98.99
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.7
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	94.88
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	94.52
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	92.02
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	86.62
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	84.83
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	81.75

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=100.00  E-value=1.4e-32  Score=201.39  Aligned_cols=142  Identities=54%  Similarity=0.993  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209            4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (145)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (145)
                      +.+|+.++.+|+++++++|+||++|++|.+|.++++++|+.+++..|++++++.+..|+.++.++++|++.+..++|+||
T Consensus         3 ~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK   82 (153)
T 3us6_A            3 VGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFK   82 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999987669999999999999


Q ss_pred             hhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCC
Q 032209           84 GSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS--VKACGNS  145 (145)
Q Consensus        84 Gss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~--~~~~~~~  145 (145)
                      |+|+|+||.+|+.+|..||.+++.++.+.+...+++|+.+|.+++.+|++|++..  +.++|.+
T Consensus        83 Gss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~~~~  146 (153)
T 3us6_A           83 GSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGS  146 (153)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999999999999  8888764

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=99.97  E-value=2.7e-29  Score=182.96  Aligned_cols=141  Identities=45%  Similarity=0.821  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHhhhhhcCCchHHHHHHHhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 032209            4 VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDESS-PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQL   82 (145)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~-~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L   82 (145)
                      +.+|+.++.+++++++++|++|..|++|..|.++++ ++|+.+++..|++++++.+..|+.++..+++||..+..++|+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L   82 (149)
T 1yvi_A            3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL   82 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence            678999999999999999999977999999987888 9999999999999999999999999998645799999999999


Q ss_pred             hhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccC
Q 032209           83 KGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS--VKACGN  144 (145)
Q Consensus        83 KGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~--~~~~~~  144 (145)
                      ||+|+|+||.+|+..|..||.+++.++.+.+...+.+++.+|.+++.+|+.|++.+  +..+|.
T Consensus        83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~~~  146 (149)
T 1yvi_A           83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAYDP  146 (149)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999998  777764

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.91  E-value=7.7e-24  Score=156.39  Aligned_cols=117  Identities=21%  Similarity=0.390  Sum_probs=108.6

Q ss_pred             hhhhcCCch-HHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHH
Q 032209           17 SLYREGYVD-DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRV   94 (145)
Q Consensus        17 ~~~~~~ild-~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGss~~lGa~~L   94 (145)
                      ++.++|++| ++|++|+.|.+++ |+|+.+++..|++++++.+..|+.|+. .+  ||..+..++|+|||+|+++||.+|
T Consensus         2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV   78 (167)
T 2r25_A            2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI   78 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence            356788999 5999999998766 999999999999999999999999999 88  999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC------------HH--------------------------------HHHHHHHHHHHHHHHHHHH
Q 032209           95 KNVCIAFRSFCDAQN------------RE--------------------------------GCMRCLQQVSHEYTMLKSK  130 (145)
Q Consensus        95 ~~~c~~LE~a~~~~~------------~~--------------------------------~~~~~l~~L~~~~~~l~~~  130 (145)
                      ..+|..||.+++.++            .+                                .+...+++++.+|..++.+
T Consensus        79 ~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~  158 (167)
T 2r25_A           79 AWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIE  158 (167)
T ss_dssp             HHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988            43                                5678999999999999999


Q ss_pred             HHHHHH
Q 032209          131 LQTLFR  136 (145)
Q Consensus       131 L~~~l~  136 (145)
                      |+.|++
T Consensus       159 L~~~~~  164 (167)
T 2r25_A          159 LSKYYN  164 (167)
T ss_dssp             HHHHTT
T ss_pred             HHHHHc
Confidence            999986

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.86  E-value=2.8e-21  Score=136.13  Aligned_cols=118  Identities=14%  Similarity=0.177  Sum_probs=104.5

Q ss_pred             hhhhhcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHH
Q 032209           16 SSLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVK   95 (145)
Q Consensus        16 ~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~   95 (145)
                      +++.+.+++|..  .|..|....|++++.+++..|++++++.+..|..++..+  |+..+.+.+|+|||+|+++|+..|+
T Consensus         4 ~~~~~~~~lD~~--~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~   79 (125)
T 2a0b_A            4 ENSKSEALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQ   79 (125)
T ss_dssp             --CHHHHHSCHH--HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccccccCCHH--HHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            345566778854  444455556899999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209           96 NVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRV  137 (145)
Q Consensus        96 ~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~  137 (145)
                      .+|..+|..++.++.+.....+..|...|.++...|+.|+..
T Consensus        80 ~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~  121 (125)
T 2a0b_A           80 QLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK  121 (125)
T ss_dssp             HHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988888899999999999999999998864

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.83  E-value=1.6e-19  Score=126.88  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=100.4

Q ss_pred             hhcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHH
Q 032209           19 YREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC   98 (145)
Q Consensus        19 ~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c   98 (145)
                      +|..++|-.  ....+ ..|+++++.+++..|+++.|+++..|+.++..+  ||+.+...+|+|||+|+++|+.+|..+|
T Consensus         1 ~~~~~~D~~--~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~   75 (119)
T 3myf_A            1 FDLHTLNWD--LCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC   75 (119)
T ss_dssp             -CTTTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             CCccccCHH--HHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            355666633  22222 478999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209           99 IAFRSFCDAQN-REGCMRCLQQVSHEYTMLKSKLQTLFRV  137 (145)
Q Consensus        99 ~~LE~a~~~~~-~~~~~~~l~~L~~~~~~l~~~L~~~l~~  137 (145)
                      ..||.+++.+. .+.+...+..+.+++..+..+++.|+..
T Consensus        76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~  115 (119)
T 3myf_A           76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ  115 (119)
T ss_dssp             HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999985 4678889999999999999999999874

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.80  E-value=7.5e-19  Score=124.13  Aligned_cols=110  Identities=16%  Similarity=0.225  Sum_probs=97.4

Q ss_pred             cCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 032209           21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA  100 (145)
Q Consensus        21 ~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~  100 (145)
                      .+++|-.  .+..+ ..|+++++.+++..|+++.++++..|+.++..+  ||+.+...+|+|||+|+++|+.+|..+|..
T Consensus        12 ~~~~D~~--~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~   86 (123)
T 3iqt_A           12 NATLDWQ--LALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL   86 (123)
T ss_dssp             GGTCCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred             CCccCHH--HHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            3456633  33222 478999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             HHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          101 FRSFCDAQNR-EGCMRCLQQVSHEYTMLKSKLQTLF  135 (145)
Q Consensus       101 LE~a~~~~~~-~~~~~~l~~L~~~~~~l~~~L~~~l  135 (145)
                      ||.+++.++. +.+...+..|.+++..+..+.+.|+
T Consensus        87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~  122 (123)
T 3iqt_A           87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL  122 (123)
T ss_dssp             HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999854 4788899999999999999999886

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.73  E-value=4.8e-19  Score=124.53  Aligned_cols=105  Identities=16%  Similarity=0.198  Sum_probs=88.6

Q ss_pred             HHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhh
Q 032209           28 FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDA  107 (145)
Q Consensus        28 ~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~  107 (145)
                      |.++..|....+++++.+++..|++++++.+..|..+....  |+..+.+.+|+|||+|+++|+..|+.+|..+|..+|.
T Consensus        14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~   91 (120)
T 1y6d_A           14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA   91 (120)
T ss_dssp             TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence            34777778778899999999999999999999999987777  8899999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          108 QNREGCMRCLQQVSHEYTMLKSKLQTL  134 (145)
Q Consensus       108 ~~~~~~~~~l~~L~~~~~~l~~~L~~~  134 (145)
                      |+...+......+.+.+.+....++.+
T Consensus        92 g~~~~~~~~~~~l~~~l~~~~d~l~~~  118 (120)
T 1y6d_A           92 NQLQEQGMETSEMLALLHITRDAYRSW  118 (120)
T ss_dssp             HHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred             CChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence            877754444555666666666666554

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.70  E-value=7e-17  Score=112.36  Aligned_cols=102  Identities=20%  Similarity=0.236  Sum_probs=85.8

Q ss_pred             CCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHH
Q 032209           22 GYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAF  101 (145)
Q Consensus        22 ~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~L  101 (145)
                      +.+|-.  .|..+ ..++++|+.+++..|++++++.+..|..+  ..  ||   ...+|+|||+|+++||.++..+|..|
T Consensus         9 ~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~l   78 (113)
T 2ooc_A            9 GAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCERC   78 (113)
T ss_dssp             CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            456633  44443 47899999999999999999999999988  45  77   89999999999999999999999999


Q ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          102 RSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS  138 (145)
Q Consensus       102 E~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~  138 (145)
                      |..++.     ....+..|..++..+..+|..++..+
T Consensus        79 E~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~~  110 (113)
T 2ooc_A           79 EAGQES-----LEGVRTALDAALLDIAAYAHEQALRS  110 (113)
T ss_dssp             HTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            998876     45567888999999998888877654

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.66  E-value=3.4e-16  Score=109.45  Aligned_cols=86  Identities=15%  Similarity=0.263  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 032209           40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQ  119 (145)
Q Consensus        40 ~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~  119 (145)
                      +..-.+++..|+++.++++..|..++..+  ||..++..+|+|||+++++|++.++.+|.+||.+++.++...+...+..
T Consensus        30 ~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i~~  107 (116)
T 1sr2_A           30 QLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISD  107 (116)
T ss_dssp             HHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45567799999999999999999999999  9999999999999999999999999999999999999998888777777


Q ss_pred             HHHHHHHH
Q 032209          120 VSHEYTML  127 (145)
Q Consensus       120 L~~~~~~l  127 (145)
                      |...+.++
T Consensus       108 L~~~l~~L  115 (116)
T 1sr2_A          108 IDSYVKSL  115 (116)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77766654

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.54  E-value=3.5e-14  Score=96.81  Aligned_cols=90  Identities=13%  Similarity=0.269  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHH
Q 032209           43 VVEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNRE  111 (145)
Q Consensus        43 ~~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~  111 (145)
                      +.+++..|++++++.+..|..++.        ..  ++..+.+.+|+|||+|+++|+..+..+|..+|..+   +.++.+
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~   80 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK   80 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999985        34  67899999999999999999999999999999876   566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 032209          112 GCMRCLQQVSHEYTMLKSKLQTL  134 (145)
Q Consensus       112 ~~~~~l~~L~~~~~~l~~~L~~~  134 (145)
                      .....+..+...+..+...++.+
T Consensus        81 ~~~~~~~~l~~~~d~l~~~l~~~  103 (105)
T 1tqg_A           81 ITSDLLDKIFAGVDMITRMVDKI  103 (105)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHh
Confidence            66667788888888877776543

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.39  E-value=6.9e-13  Score=95.04  Aligned_cols=89  Identities=13%  Similarity=0.266  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHHH
Q 032209           44 VEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREG  112 (145)
Q Consensus        44 ~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~  112 (145)
                      .+++..|++++++.+..|..++.        ..  ++..+.+.+|+|||+|+++|+..+.++|..+|...   +.+....
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~   80 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKI   80 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            47899999999999999999983        45  78999999999999999999999999999999865   5665444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 032209          113 CMRCLQQVSHEYTMLKSKLQTL  134 (145)
Q Consensus       113 ~~~~l~~L~~~~~~l~~~L~~~  134 (145)
                      ....+..+...+..+...++..
T Consensus        81 ~~~l~~~l~~~~D~l~~~l~~~  102 (139)
T 2ld6_A           81 TSDLLDKIFAGVDMITRMVDKI  102 (139)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666777666666554

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.34  E-value=2.4e-12  Score=92.89  Aligned_cols=90  Identities=13%  Similarity=0.281  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HhhcCHH
Q 032209           43 VVEVASLFFDDAEKLINSMARALE--------QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNRE  111 (145)
Q Consensus        43 ~~~ll~~F~~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a---~~~~~~~  111 (145)
                      +.+++..|++++++.+..|..++.        ..  ++..+.+.+|+|||+|+++|+..+.++|..+|..   .+.+...
T Consensus         5 ~~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~   82 (146)
T 1i5n_A            5 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQ   82 (146)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            357899999999999999999982        23  4689999999999999999999999999999987   5666544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 032209          112 GCMRCLQQVSHEYTMLKSKLQTL  134 (145)
Q Consensus       112 ~~~~~l~~L~~~~~~l~~~L~~~  134 (145)
                      .....+..+...+..+...++.+
T Consensus        83 ~~~~l~~~l~~~~D~l~~~l~~~  105 (146)
T 1i5n_A           83 LNTDIINLFLETKDIMQEQLDAY  105 (146)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555665555555443

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.33  E-value=4.2e-12  Score=87.62  Aligned_cols=91  Identities=14%  Similarity=0.195  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-----C-CCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHH---HhhcCHHHH
Q 032209           43 VVEVASLFFDDAEKLINSMARALEQ-----P-CVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSF---CDAQNREGC  113 (145)
Q Consensus        43 ~~~ll~~F~~~~~~~l~~L~~a~~~-----~-~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a---~~~~~~~~~  113 (145)
                      +.+++..|++++++.+..|.+++..     . .-++..+.+.+|+|||+|+++|+..+.++|..+|..   .+.+.....
T Consensus         4 ~~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~   83 (113)
T 2lch_A            4 HQEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKIT   83 (113)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4578999999999999999988732     1 003567999999999999999999999999999964   456655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032209          114 MRCLQQVSHEYTMLKSKLQT  133 (145)
Q Consensus       114 ~~~l~~L~~~~~~l~~~L~~  133 (145)
                      ...+..+...+..+...++.
T Consensus        84 ~~l~~~l~~~~d~l~~~l~~  103 (113)
T 2lch_A           84 SDLIDKVKKKLDMVTRELDK  103 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            56677777777777666653

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=98.99  E-value=1.9e-09  Score=77.60  Aligned_cols=91  Identities=16%  Similarity=0.166  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHHHH
Q 032209           43 VVEVASLFFDDAEKLINSMARALEQ---PCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREGC  113 (145)
Q Consensus        43 ~~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~~  113 (145)
                      +.+++..|++++++.+..|...+..   ++.|   ...+.+.+|+|||+|+++|+..+.++|..+|...   +.+...-.
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~   88 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD   88 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            5689999999999999999887642   2113   4679999999999999999999999999999765   45533322


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032209          114 MRCLQQVSHEYTMLKSKLQT  133 (145)
Q Consensus       114 ~~~l~~L~~~~~~l~~~L~~  133 (145)
                      ...+..+...+..+...++.
T Consensus        89 ~~l~dlll~~~D~l~~lv~~  108 (144)
T 3kyj_A           89 GEIVEILLFASDTLRAMLEE  108 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444454444444443

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.70  E-value=5.8e-08  Score=74.28  Aligned_cols=91  Identities=14%  Similarity=0.282  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHHHH
Q 032209           43 VVEVASLFFDDAEKLINSMARALEQ---PCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREGC  113 (145)
Q Consensus        43 ~~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~~  113 (145)
                      +.+++..|++++.+.+..|.+.+..   ++.|   ...+.+.+|+|||+|+++|+..+.++|..+|...   +.+...--
T Consensus         5 ~~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~   84 (225)
T 2lp4_A            5 ISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLN   84 (225)
T ss_dssp             GGGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            3468899999999999999887633   2223   4678899999999999999999999999999765   44433322


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032209          114 MRCLQQVSHEYTMLKSKLQT  133 (145)
Q Consensus       114 ~~~l~~L~~~~~~l~~~L~~  133 (145)
                      ...+.-+...+..+...++.
T Consensus        85 ~~~~~ll~~~~D~l~~~l~~  104 (225)
T 2lp4_A           85 TDIINLFLETKDIMQEQLDA  104 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555544443

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A

Probab=94.88  E-value=0.51  Score=33.05  Aligned_cols=78  Identities=12%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             HHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhhhhh--------hhh----------ChHHHHHHHHHHHHHHhhcCHH
Q 032209           51 FDDAEKLINS-MARALEQPCVDFKQVDSHVHQLKGSS--------SSI----------GALRVKNVCIAFRSFCDAQNRE  111 (145)
Q Consensus        51 ~~~~~~~l~~-L~~a~~~~~~D~~~l~~~aH~LKGss--------~~l----------Ga~~L~~~c~~LE~a~~~~~~~  111 (145)
                      +.++.+.+.. |...+..+  ||..++.+.|.-=|..        .++          =+..|.+....|..+++.+|..
T Consensus        32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~  109 (133)
T 3ls0_A           32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNGS  109 (133)
T ss_dssp             HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            3456778899 99999999  9999999999654432        222          1234555556666777777765


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          112 GCMRCLQQVSHEYTMLKSKLQTLFRV  137 (145)
Q Consensus       112 ~~~~~l~~L~~~~~~l~~~L~~~l~~  137 (145)
                      .+..       .|......+++|+++
T Consensus       110 ~a~k-------~Y~~a~adfdafl~l  128 (133)
T 3ls0_A          110 QAKI-------QYQEALADFDSFLNL  128 (133)
T ss_dssp             HHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHH-------HHHHHHHHHHHHHHh
Confidence            5544       555555566666543

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}

Probab=94.52  E-value=0.43  Score=33.29  Aligned_cols=77  Identities=4%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhh--------h----------ChHHHHHHHHHHHHHHhhcCHHH
Q 032209           51 FDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSS--------I----------GALRVKNVCIAFRSFCDAQNREG  112 (145)
Q Consensus        51 ~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~--------l----------Ga~~L~~~c~~LE~a~~~~~~~~  112 (145)
                      +.++.+.+..|...+..+  ||..++.+.|.-=|..+.        +          =+..|.+....|..+++.+|...
T Consensus        30 i~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~  107 (130)
T 3zsu_A           30 IEKNAERFADLEVSVAKG--DWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVTV  107 (130)
T ss_dssp             HHHHHTTHHHHHHHHHTT--CHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhhc--chHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            345678889999999999  999999999975554321        1          13455666667777787777665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          113 CMRCLQQVSHEYTMLKSKLQTLFR  136 (145)
Q Consensus       113 ~~~~l~~L~~~~~~l~~~L~~~l~  136 (145)
                      +..       .|..+...+++|++
T Consensus       108 a~k-------~Y~~a~adfdafl~  124 (130)
T 3zsu_A          108 AQE-------GFREAEADFKAYLN  124 (130)
T ss_dssp             HHH-------HHHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHHHHHHHH
Confidence            554       45555555555554

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A

Probab=92.02  E-value=2.4  Score=30.15  Aligned_cols=76  Identities=4%  Similarity=-0.003  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh--------hhhhhC----------hHHHHHHHHHHHHHHhhcCHHH
Q 032209           51 FDDAEKLINSMARALEQPCVDFKQVDSHVHQLKG--------SSSSIG----------ALRVKNVCIAFRSFCDAQNREG  112 (145)
Q Consensus        51 ~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG--------ss~~lG----------a~~L~~~c~~LE~a~~~~~~~~  112 (145)
                      +.++.+.+..++..+..+  +|..++...|.=-|        ...++.          +..|++....|..+++..+...
T Consensus        52 Ik~~a~~i~~vk~lI~k~--~W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~  129 (149)
T 1vyk_A           52 AKVSASEILNVKQFIDRK--AWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTE  129 (149)
T ss_dssp             HHHHHHHHHTTHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhhc--cHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            344566678889999999  99999999886332        222222          2557777778888888888777


Q ss_pred             HHHHHHHHHHHHHHHH
Q 032209          113 CMRCLQQVSHEYTMLK  128 (145)
Q Consensus       113 ~~~~l~~L~~~~~~l~  128 (145)
                      +...+......|..+.
T Consensus       130 a~~~Y~~t~~~ld~vl  145 (149)
T 1vyk_A          130 AEKYYGQTVSNINEVL  145 (149)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6665555444444443

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=86.62  E-value=2.5  Score=30.76  Aligned_cols=44  Identities=9%  Similarity=0.075  Sum_probs=26.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209           38 SSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (145)
Q Consensus        38 ~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (145)
                      .+.+-+.++..............|.+++..+  ||+.+...+.+||
T Consensus       118 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~  161 (181)
T 3uo3_A          118 DDEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK  161 (181)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            3444455555555555566666666666666  7776666666654

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=84.83  E-value=2.7  Score=31.26  Aligned_cols=42  Identities=17%  Similarity=0.370  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209           40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (145)
Q Consensus        40 ~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (145)
                      .+-+.++-..+.....+.+..|.+++..+  ||..+...+.+||
T Consensus       150 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~  191 (207)
T 3bvo_A          150 EAAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR  191 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence            33355555555555555566677777777  7877777777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	1e-39
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	6e-20
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	4e-17
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	6e-15
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	8e-12
d2ooca1	104	a.24.10.6 (A:8-111) Histidine phosphotransferase S	6e-05

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  128 bits (322), Expect = 1e-39
 Identities = 63/135 (46%), Positives = 95/135 (70%), Gaps = 1/135 (0%)

Query: 4   VSQLQKQFIDFSSSLYREGYVDDQFSQLHKLQDE-SSPDFVVEVASLFFDDAEKLINSMA 62
            + L+ Q     SS++ +G VD+QF QL  LQDE  +P FV EV +LF DDA+++IN +A
Sbjct: 2   AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 61

Query: 63  RALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSH 122
             LEQP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+GC+  L  V +
Sbjct: 62  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 121

Query: 123 EYTMLKSKLQTLFRV 137
           ++  L++K QT+ ++
Sbjct: 122 DFYDLRNKFQTMLQL 136

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 77.4 bits (190), Expect = 6e-20
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 17  SLYREGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVD 76
            L       ++ ++     DE++        +LF D     +  +         DF  + 
Sbjct: 7   QLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALA 64

Query: 77  SHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTML 127
              H+LKG  + +  +  K +C         ++  G  + +  +      L
Sbjct: 65  QTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSL 115

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 70.0 bits (171), Expect = 4e-17
 Identities = 14/105 (13%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 28  FSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSS 87
              L +  +   P  + +  ++F       ++ +   L     D K +    H++KG++ 
Sbjct: 9   IPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAG 66

Query: 88  SIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQ 132
           S+G   ++ +    +S       +     ++++  E+      L+
Sbjct: 67  SVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLK 111

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.5 bits (159), Expect = 6e-15
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 26  DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGS 85
              +++  + D+   DF   +   F D A+     M R L+    +  ++D+  H LKGS
Sbjct: 11  TILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQLDG-EKNLTELDNLGHFLKGS 68

Query: 86  SSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTL 134
           S+++G  R+  VC   ++           +     +     + + +   
Sbjct: 69  SAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINID 117

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 56.3 bits (135), Expect = 8e-12
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 29  SQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSS 88
            ++ +L  E   D V  +  +F  + +  I ++             +    H LK S++S
Sbjct: 9   QKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAAS 66

Query: 89  IGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQT 133
            GA R+    IA      A   +       ++     + +   ++
Sbjct: 67  FGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRS 111

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 37.7 bits (87), Expect = 6e-05
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVC 98
             V EV +LF + A      +                 VH +KG++  +GA  +  VC
Sbjct: 16 FAVVDEVLALFREQAALWAPMLDP-------THPGWKDAVHTVKGAARGVGAFNLGEVC 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	99.96
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.87
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.84
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.84
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.76
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.69
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.03
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	98.97
d1nzea_	112	Oxygen-evolving enhancer protein 3, {Spinach (Spin	94.55
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	93.51
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	86.34

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.96  E-value=4.6e-28  Score=173.44  Aligned_cols=134  Identities=46%  Similarity=0.841  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHhhhhhcCCchHHHHHHHhhhc-cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209            5 SQLQKQFIDFSSSLYREGYVDDQFSQLHKLQD-ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (145)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~-~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (145)
                      ..|+.++...+++++++|++|.+|.++..|.+ +++|+|+.+++..|++++++.+..|+.++..++.||..++..+|+||
T Consensus         3 ~~l~~~~~~~~~~~~~~g~lD~~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~LK   82 (142)
T d1yvia1           3 AALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLK   82 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHhcccccHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            36899999999999999999999999998885 68899999999999999999999999999853339999999999999


Q ss_pred             hhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209           84 GSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRVS  138 (145)
Q Consensus        84 Gss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~~  138 (145)
                      |+|+++|+..+++.|..||.+++.++.+.+...+.+|+.+|..++.+|+.|++.+
T Consensus        83 Gss~~lGa~~l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~~~  137 (142)
T d1yvia1          83 GSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLE  137 (142)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.1e-22  Score=137.88  Aligned_cols=113  Identities=14%  Similarity=0.195  Sum_probs=103.7

Q ss_pred             cCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHH
Q 032209           21 EGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIA  100 (145)
Q Consensus        21 ~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~  100 (145)
                      ++++|..  .|..+.+..|++++.+++..|+++.++.+..|+.++.++  ||+.++..+|+|||+|+++|+..++.+|+.
T Consensus         4 e~~lD~~--~L~~l~~~~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~--d~~~~~~~aH~LKgsa~~~G~~~l~~~~~~   79 (118)
T d2a0ba_           4 EALLDIP--MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQLGQQ   79 (118)
T ss_dssp             HHHSCHH--HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccCCHH--HHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            4556643  455555567799999999999999999999999999999  999999999999999999999999999999


Q ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          101 FRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRV  137 (145)
Q Consensus       101 LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l~~  137 (145)
                      ||.+++.++.+.+...+++|...++...++|+.|++.
T Consensus        80 lE~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l~~  116 (118)
T d2a0ba_          80 IQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK  116 (118)
T ss_dssp             HTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999875

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.84  E-value=1e-22  Score=139.45  Aligned_cols=112  Identities=16%  Similarity=0.206  Sum_probs=102.5

Q ss_pred             hcCCchHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHH
Q 032209           20 REGYVDDQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCI   99 (145)
Q Consensus        20 ~~~ild~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~   99 (145)
                      +.+++|..  +|.+|....|++++.+++..|+++.++.+..|.+++..+  ||+.++..+|+|||+|+++|+.+|...|+
T Consensus         2 ~~~lld~~--~l~~L~~~~G~e~~~~ll~~F~~~~~~~~~~L~~a~~~~--d~~~l~~~aH~LKGsa~~~Ga~~L~~~~~   77 (114)
T d1y6da_           2 NTDVLNQQ--KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAI   77 (114)
T ss_dssp             CCTTTTTT--HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             CHHHCCHH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            46788855  555666556689999999999999999999999999999  99999999999999999999999999999


Q ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          100 AFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLF  135 (145)
Q Consensus       100 ~LE~a~~~~~~~~~~~~l~~L~~~~~~l~~~L~~~l  135 (145)
                      .||.+++.++.+.+...+..+...+.++..+++.|.
T Consensus        78 ~lE~~~~~~~~~~~~~~~~~l~~~~~~t~~a~r~w~  113 (114)
T d1y6da_          78 AIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWT  113 (114)
T ss_dssp             HHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999988888899999999999999999885

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4.2e-20  Score=134.81  Aligned_cols=114  Identities=20%  Similarity=0.379  Sum_probs=100.4

Q ss_pred             hcCCch-HHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhChHHHHHH
Q 032209           20 REGYVD-DQFSQLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALE-QPCVDFKQVDSHVHQLKGSSSSIGALRVKNV   97 (145)
Q Consensus        20 ~~~ild-~~~~~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~   97 (145)
                      +..++| .+|++|..|. +++++|+.+++..|++++++.+..|++++. .+  ||+.+..++|+|||+|+++|+..+...
T Consensus         4 p~~~id~~~l~~l~~m~-~~d~~f~~~li~~F~~~~~~~~~~l~~al~~~~--d~~~l~~~aH~lKgss~~~G~~~~~~~   80 (166)
T d2r25a1           4 PSEIINWTILNEIISMD-DDDSDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRIAWV   80 (166)
T ss_dssp             CSCSSCHHHHHHHHHTT-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccCHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            445777 7899999985 789999999999999999999999999995 47  999999999999999999999999999


Q ss_pred             HHHHHHHHhhcC--------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 032209           98 CIAFRSFCDAQN--------------------------------------------REGCMRCLQQVSHEYTMLKSKLQT  133 (145)
Q Consensus        98 c~~LE~a~~~~~--------------------------------------------~~~~~~~l~~L~~~~~~l~~~L~~  133 (145)
                      |..||..++.++                                            ...+...+.+.+..|..++.+|+.
T Consensus        81 ~~~ie~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~l~~I~~~L~~a~d~~~~a~~~L~~  160 (166)
T d2r25a1          81 CERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIELSK  160 (166)
T ss_dssp             HHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccccchhHHHHHHHHHHHHHHHHHhhhhcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987532                                            223557778888999999999999


Q ss_pred             HHH
Q 032209          134 LFR  136 (145)
Q Consensus       134 ~l~  136 (145)
                      |+.
T Consensus       161 ~~~  163 (166)
T d2r25a1         161 YYN  163 (166)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            975

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.6e-18  Score=119.22  Aligned_cols=86  Identities=15%  Similarity=0.263  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 032209           40 PDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQ  119 (145)
Q Consensus        40 ~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~~l~~  119 (145)
                      +.|..+++..|+++.|.++..|+.+++++  ||..++..||+|||+++++|+..+..+|+.||.+++.++.+.+...+.+
T Consensus        30 ~~~~~~~~~lF~~~~p~~l~~L~~a~~~~--D~~~l~~~aH~LKGs~~~~Ga~~l~~~~~~lE~~~~~~~~~~~~~ll~~  107 (116)
T d1sr2a_          30 QLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISD  107 (116)
T ss_dssp             HHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            45778899999999999999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 032209          120 VSHEYTML  127 (145)
Q Consensus       120 L~~~~~~l  127 (145)
                      |+..+.++
T Consensus       108 le~~~~~l  115 (116)
T d1sr2a_         108 IDSYVKSL  115 (116)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98888765

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.69  E-value=6.2e-17  Score=109.47  Aligned_cols=94  Identities=18%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             HHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcC
Q 032209           30 QLHKLQDESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQN  109 (145)
Q Consensus        30 ~L~~L~~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~  109 (145)
                      .|..+. +||++++.+++..|+++.+..+..+     ++  |++.++..+|+|||+|+|+|+.+|.++|..||.+++.++
T Consensus         7 ~L~~~~-ggd~~l~~~ll~~F~e~~~~~~~~l-----~~--d~~~~~~~aH~LKGsa~~iGa~~L~~~a~~lE~~~~~~~   78 (104)
T d2ooca1           7 YLEGFA-AGDFAVVDEVLALFREQAALWAPML-----DP--THPGWKDAVHTVKGAARGVGAFNLGEVCERCEAGQESLE   78 (104)
T ss_dssp             HHHHHT-TTCHHHHHHHHHHHHHHHHHHGGGC-----ST--TSTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSSCHH
T ss_pred             HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHH-----cc--CHHHHHHHHHHHHhHHHHcCHHHHHHHHHHHHHHHHccC
Confidence            566654 7899999999999999999987655     45  899999999999999999999999999999999887532


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032209          110 REGCMRCLQQVSHEYTMLKSKLQTLFRVSVK  140 (145)
Q Consensus       110 ~~~~~~~l~~L~~~~~~l~~~L~~~l~~~~~  140 (145)
                               .+..++......+..|+...+.
T Consensus        79 ---------~~~~~l~~~~~~i~~~~~e~~~  100 (104)
T d2ooca1          79 ---------GVRTALDAALLDIAAYAHEQAL  100 (104)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------chHHHHHHHHHHHHHHHHHHHH
Confidence                     3444566666666666665543

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=7.1e-10  Score=73.68  Aligned_cols=89  Identities=15%  Similarity=0.291  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHH---hhcCHHHHH
Q 032209           44 VEVASLFFDDAEKLINSMARALEQ---PCVD---FKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFC---DAQNREGCM  114 (145)
Q Consensus        44 ~~ll~~F~~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~---~~~~~~~~~  114 (145)
                      .+++..|++++++.+..+...+..   ++.|   ...+.+.+|+|||+|+++|...+.++|..+|...   +.+..+.-.
T Consensus         4 ~E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~~~~~~~~~~~   83 (105)
T d1tqga_           4 MEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   83 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            468999999999999998887732   1113   4678899999999999999999999999999764   344333223


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 032209          115 RCLQQVSHEYTMLKSKLQ  132 (145)
Q Consensus       115 ~~l~~L~~~~~~l~~~L~  132 (145)
                      ..+..+...+..+...++
T Consensus        84 ~~~~~l~~~~d~l~~~l~  101 (105)
T d1tqga_          84 DLLDKIFAGVDMITRMVD  101 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.97  E-value=2.2e-09  Score=73.49  Aligned_cols=90  Identities=16%  Similarity=0.276  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---cCCCCCH---HHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHh---hcCHHHHH
Q 032209           44 VEVASLFFDDAEKLINSMARAL---EQPCVDF---KQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCD---AQNREGCM  114 (145)
Q Consensus        44 ~~ll~~F~~~~~~~l~~L~~a~---~~~~~D~---~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~---~~~~~~~~  114 (145)
                      .+++..|++++.+.+..+...+   ..++.|.   ..+.+.+|+|||+|+++|...+.++|..+|....   .+...--.
T Consensus         3 ~e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~   82 (128)
T d1i5na_           3 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   82 (128)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            3578999999999999999886   2222243   5888999999999999999999999999997654   44333223


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 032209          115 RCLQQVSHEYTMLKSKLQT  133 (145)
Q Consensus       115 ~~l~~L~~~~~~l~~~L~~  133 (145)
                      ..+..+...+..+...+..
T Consensus        83 ~~~~~l~~~~d~l~~~l~~  101 (128)
T d1i5na_          83 DIINLFLETKDIMQEQLDA  101 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445555555555544443

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=94.55  E-value=0.21  Score=32.28  Aligned_cols=75  Identities=7%  Similarity=0.044  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------hhhhhhhhC----------hHHHHHHHHHHHHHHhhcCHHHH
Q 032209           52 DDAEKLINSMARALEQPCVDFKQVDSHVHQ--------LKGSSSSIG----------ALRVKNVCIAFRSFCDAQNREGC  113 (145)
Q Consensus        52 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~--------LKGss~~lG----------a~~L~~~c~~LE~a~~~~~~~~~  113 (145)
                      .++.+.|..++..+..+  +|..++...|.        |.....+.+          +..+.+....|..+++.++...+
T Consensus        16 ~~sa~~L~~l~~lI~k~--~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~LD~Aar~kd~~~a   93 (112)
T d1nzea_          16 KVSASEILNVKQFIDRK--AWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEA   93 (112)
T ss_dssp             HHHHHHHHTTHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            56778889999999999  99999999887        333333443          34577888888888998888877


Q ss_pred             HHHHHHHHHHHHHHH
Q 032209          114 MRCLQQVSHEYTMLK  128 (145)
Q Consensus       114 ~~~l~~L~~~~~~l~  128 (145)
                      ...+......+..+.
T Consensus        94 ~~~Y~~t~~~ld~~l  108 (112)
T d1nzea_          94 EKYYGQTVSNINEVL  108 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666555555554443

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.1  Score=32.58  Aligned_cols=45  Identities=7%  Similarity=0.055  Sum_probs=32.9

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 032209           37 ESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLK   83 (145)
Q Consensus        37 ~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   83 (145)
                      .++++-+..+...........+..+..++..+  ||..+...+.+||
T Consensus        32 ~~d~~~l~~l~~ei~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kLk   76 (95)
T d1fpoa2          32 AKDEARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR   76 (95)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHhH
Confidence            45666677777777777777777777777777  8887777777764

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=86.34  E-value=2.6  Score=26.42  Aligned_cols=85  Identities=9%  Similarity=0.026  Sum_probs=60.6

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhChHHHHHHHHHHHHHHhhcCHHHHHH
Q 032209           36 DESSPDFVVEVASLFFDDAEKLINSMARALEQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMR  115 (145)
Q Consensus        36 ~~~~~~~~~~ll~~F~~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~c~~LE~a~~~~~~~~~~~  115 (145)
                      ...+.+-+.+++..|..-+......+..-+...++|-+.....-|         |...|......++..+..|+.+++..
T Consensus        19 ~A~s~~Ei~~~m~~lr~a~~d~~~~l~~~~~~~~~~~~~~~~~~~---------g~d~L~~~ld~i~~la~~G~l~eAk~   89 (106)
T d256ba_          19 KADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRH---------GFDILVGQIDDALKLANEGKVKEAQA   89 (106)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHHTTSCCGGGTTSCTTSHHHHHHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHhhHHhhccccccchHhHHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            356777788888888877777666555555554345555544444         55889999999999999999999988


Q ss_pred             HHHHHHHHHHHHHH
Q 032209          116 CLQQVSHEYTMLKS  129 (145)
Q Consensus       116 ~l~~L~~~~~~l~~  129 (145)
                      .+.+|..-...-+.
T Consensus        90 ~l~~l~~~r~~YHk  103 (106)
T d256ba_          90 AAEQLKTTRNAYHQ  103 (106)
T ss_dssp             HHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            77776665555444