Citrus Sinensis ID: 032225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MRVTLRILPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNAASED
Secondary Structure (PSIPRED)
ccEEEccHHHHcccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccEEcccccccccccEEEHcccEHHHHHHHHHHccccccccccccccccccccccccHHHHHHcccccEEccccHHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mrvtlrilpqvkkgvcgngsgitgtnrdlrirEDIPKYLLnldensayydpkirsmredlnpddnpnekfyagynryrmggqalewKQVNIHAWkasgrgqdihpeAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNAASED
Flexible Loop (DISEMBL)
mrvtlrilpqvkkgvcgngsgitgtnrdlrirEDIPKYLLNLDENSAYYDPKIRsmredlnpddnpNEKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKImekygnaased
Low Complexity Region (SEG)
MRVTLRILPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNAASED
Disordered region (IsUnstruct)
****LRILPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYD******************KFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDI***********************
Disordered Region (DISOPRED)
***TLRIL**********************IREDIPKYLLNLDENSAYYDPKIR***********PNEKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAEL************************GN*****
Disordered Region (DISEMBL)
MRVTLRILPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNAASED
Disordered Region (DISPRO)
*RVTLRILPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVTLRILPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNAASED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q6ZK48	536	Pre-mRNA-splicing factor	yes	no	0.951	0.257	0.623	1e-36
A2YQU8	536	Pre-mRNA-splicing factor	N/A	no	0.951	0.257	0.623	1e-36
Q9SHY8	535	Pre-mRNA-splicing factor	yes	no	0.951	0.257	0.594	2e-35
O23174	536	Pre-mRNA-splicing factor	no	no	0.813	0.220	0.627	3e-34
Q4R4P2	586	Pre-mRNA-splicing factor	N/A	no	0.793	0.196	0.495	2e-21
Q5ZIG2	564	Pre-mRNA-splicing factor	yes	no	0.793	0.203	0.487	3e-21
Q8BHJ9	585	Pre-mRNA-splicing factor	yes	no	0.793	0.196	0.487	4e-21
O95391	586	Pre-mRNA-splicing factor	yes	no	0.793	0.196	0.487	4e-21
Q80ZG5	586	Pre-mRNA-splicing factor	yes	no	0.793	0.196	0.487	4e-21
Q3ZBE5	586	Pre-mRNA-splicing factor	yes	no	0.793	0.196	0.487	5e-21

>sp|Q6ZK48|SLU7_ORYSJ Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 105/138 (76%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSAYYDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           +KFY G N+ R+ GQALE+KQ+NIHAW+A  +GQDIH +AA +QAEL ++  K  +EK +
Sbjct: 277 DKFYVGDNQNRLSGQALEFKQLNIHAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+KIMEKYGNAASE+
Sbjct: 337 SENKDKIMEKYGNAASEE 354

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YQU8|SLU7_ORYSI Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 105/138 (76%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSAYYDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           +KFY G N+ R+ GQALE+KQ+NIHAW+A  +GQDIH +AA +QAEL ++  K  +EK +
Sbjct: 277 DKFYVGDNQNRLSGQALEFKQLNIHAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+KIMEKYGNAASE+
Sbjct: 337 SENKDKIMEKYGNAASEE 354

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SHY8|SLU7A_ARATH Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 104/138 (75%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSA+YDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           +KFY G N+YR  GQALE+KQ+NIH+W+A  +GQD+H +AA +QAEL Y+  +  +EK +
Sbjct: 277 DKFYLGDNQYRNSGQALEFKQLNIHSWEAFDKGQDMHMQAAPSQAELLYKSFQVAKEKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+ IM+KYGNAA+ED
Sbjct: 337 SQTKDTIMDKYGNAATED 354

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.

Arabidopsis thaliana (taxid: 3702)

>sp|O23174|SLU7B_ARATH Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 91/118 (77%)

Query: 27  RDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGGQALEW 86
           R+LRIRED  KYLLNLD NSA+YDPK RSMRED  PD +PNEKFY G N+YR  GQALE+
Sbjct: 236 RNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQALEF 295

Query: 87  KQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNAASE 144
           KQ+NIH+ +A  +G D+H +AA +QAEL Y+  K  +EK +   K+ IMEKYGNAA+E
Sbjct: 296 KQINIHSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQTKDTIMEKYGNAATE 353

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4R4P2|SLU7_MACFA Pre-mRNA-splicing factor SLU7 OS=Macaca fascicularis GN=SLU7 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 25  TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
           T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct: 261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query: 83  ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
            +   Q  + AW+A  RG ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct: 321 TISMAQTQLFAWEAYDRGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.

Macaca fascicularis (taxid: 9541)

>sp|Q5ZIG2|SLU7_CHICK Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=SLU7 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 25  TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
           T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct: 242 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANTGKNPDEVGYAGDNFVRYTGD 301

Query: 83  ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
            +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct: 302 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKAQQKESILEKYG 358

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region.

Gallus gallus (taxid: 9031)

>sp|Q8BHJ9|SLU7_MOUSE Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=Slu7 PE=1 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 25  TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
           T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct: 261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query: 83  ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
            +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct: 321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.

Mus musculus (taxid: 10090)

>sp|O95391|SLU7_HUMAN Pre-mRNA-splicing factor SLU7 OS=Homo sapiens GN=SLU7 PE=1 SV=2

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 25  TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
           T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct: 261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query: 83  ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
            +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct: 321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.

Homo sapiens (taxid: 9606)

>sp|Q80ZG5|SLU7_RAT Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus GN=Slu7 PE=2 SV=2

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 25  TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
           T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct: 261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query: 83  ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
            +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct: 321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.

Rattus norvegicus (taxid: 10116)

>sp|Q3ZBE5|SLU7_BOVIN Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU7 PE=2 SV=2

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 74/117 (63%), Gaps = 2/117 (1%)

Query: 25  TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
           T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct: 261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query: 83  ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
            +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct: 321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
297819122	368	hypothetical protein ARALYDRAFT_905771 [	0.951	0.375	0.601	2e-35
449482878	536	PREDICTED: pre-mRNA-splicing factor SLU7	0.951	0.257	0.623	2e-35
449442853	536	PREDICTED: pre-mRNA-splicing factor SLU7	0.951	0.257	0.623	2e-35
255567264	536	step II splicing factor slu7, putative [	0.951	0.257	0.630	2e-35
224135337	536	predicted protein [Populus trichocarpa]	0.951	0.257	0.630	2e-35
413941790	310	hypothetical protein ZEAMMB73_762328 [Ze	0.855	0.4	0.637	2e-35
224121426	536	predicted protein [Populus trichocarpa]	0.951	0.257	0.623	3e-35
242078067	535	hypothetical protein SORBIDRAFT_07g00230	0.951	0.257	0.630	5e-35
115474617	536	Os08g0127700 [Oryza sativa Japonica Grou	0.951	0.257	0.623	7e-35
356567955	540	PREDICTED: pre-mRNA-splicing factor SLU7	0.951	0.255	0.615	1e-34

>gi|297819122|ref|XP_002877444.1| hypothetical protein ARALYDRAFT_905771 [Arabidopsis lyrata subsp. lyrata] gi|297323282|gb|EFH53703.1| hypothetical protein ARALYDRAFT_905771 [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 100/138 (72%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +VKK V     G TGT R+LRIRED  KYLLNLD NSAYYDPK RSMRED  PD NPN
Sbjct: 203 FAKVKKRVRTTDGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKSRSMREDPLPDANPN 262

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           EKF  G N+YR  GQALE+KQ+N+++ +A G+GQDIH +AA +QAEL Y+  K  +EK  
Sbjct: 263 EKFCLGDNQYRNSGQALEFKQLNMYSCEAFGKGQDIHMQAAPSQAELCYKRVKVTKEKLN 322

Query: 128 LCKKEKIMEKYGNAASED 145
              K+ IM KYGNAA++D
Sbjct: 323 NQIKDTIMAKYGNAAAKD 340

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449482878|ref|XP_004156430.1| PREDICTED: pre-mRNA-splicing factor SLU7-like [Cucumis sativus]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 105/138 (76%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSAYYDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDVDPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           EKFY G N+YR+ GQAL++KQ+N+HAW+A  +GQDIH +AA +QAEL Y+  K I+EK +
Sbjct: 277 EKFYEGDNQYRISGQALDFKQLNVHAWEAFDKGQDIHMQAAPSQAELLYKNYKVIKEKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+ IMEKYGNAA E+
Sbjct: 337 SHTKDAIMEKYGNAADEE 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442853|ref|XP_004139195.1| PREDICTED: pre-mRNA-splicing factor SLU7-like [Cucumis sativus]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 105/138 (76%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSAYYDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDVDPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           EKFY G N+YR+ GQAL++KQ+N+HAW+A  +GQDIH +AA +QAEL Y+  K I+EK +
Sbjct: 277 EKFYEGDNQYRISGQALDFKQLNVHAWEAFDKGQDIHMQAAPSQAELLYKNYKVIKEKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+ IMEKYGNAA E+
Sbjct: 337 SHTKDAIMEKYGNAADEE 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567264|ref|XP_002524613.1| step II splicing factor slu7, putative [Ricinus communis] gi|223536166|gb|EEF37821.1| step II splicing factor slu7, putative [Ricinus communis]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 105/138 (76%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSA+YDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           EKFY G N+YR  GQALE+KQ+NIH+W+A  +GQDIH +AA +QAEL Y+  K I+EK +
Sbjct: 277 EKFYGGDNQYRNSGQALEFKQLNIHSWEAFDKGQDIHMQAAPSQAELLYKNYKVIKEKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+ IMEKYGNAASE+
Sbjct: 337 TRTKDTIMEKYGNAASEE 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135337|ref|XP_002322045.1| predicted protein [Populus trichocarpa] gi|222869041|gb|EEF06172.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 104/138 (75%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSA+YDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           EKFY G N+YR  GQALE+K +NIHAW+A  +GQDIH +AA +QAEL Y+  K I+EK +
Sbjct: 277 EKFYEGDNQYRNSGQALEFKHLNIHAWEAFDKGQDIHMQAAPSQAELLYKNHKVIKEKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+ IMEKYGNAASE+
Sbjct: 337 TRTKDTIMEKYGNAASEE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413941790|gb|AFW74439.1| hypothetical protein ZEAMMB73_762328 [Zea mays]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 96/124 (77%)

Query: 22  ITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGG 81
           +   +R+LRIRED  KYLLNLD NSAYYDPK RSMRED  PD +PN+KFY G N+ R+ G
Sbjct: 5   LFCCHRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSG 64

Query: 82  QALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNA 141
           QALE+KQ+NIHAW+A  +GQDIH +AA +QAEL Y+  K  +E  +   K+KIMEKYGNA
Sbjct: 65  QALEFKQLNIHAWEAFEKGQDIHMQAAPSQAELLYKSFKVKKEMLKSEHKDKIMEKYGNA 124

Query: 142 ASED 145
           ASED
Sbjct: 125 ASED 128

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121426|ref|XP_002318579.1| predicted protein [Populus trichocarpa] gi|222859252|gb|EEE96799.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 104/138 (75%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD +SA+YDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVDSAHYDPKTRSMREDPLPDADPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           EKFY G NRYR  GQALE+K +NIHAW+A  +GQDIH +AA +QAEL Y+  K I++K +
Sbjct: 277 EKFYGGDNRYRNSGQALEFKHLNIHAWEAFDKGQDIHMQAAPSQAELLYKNHKVIKDKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+ IMEKYGNAASE+
Sbjct: 337 TRTKDTIMEKYGNAASEE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242078067|ref|XP_002443802.1| hypothetical protein SORBIDRAFT_07g002300 [Sorghum bicolor] gi|241940152|gb|EES13297.1| hypothetical protein SORBIDRAFT_07g002300 [Sorghum bicolor]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 104/138 (75%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSAYYDPK RSMRED  PD +PN
Sbjct: 216 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPN 275

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           +KFY G N+ R+ GQALE+KQ+NIHAW+A  +GQDIH +AA +QAEL Y+  K  +E  +
Sbjct: 276 DKFYVGDNQNRLSGQALEFKQLNIHAWEAFEKGQDIHMQAAPSQAELLYKSFKVKKEMLK 335

Query: 128 LCKKEKIMEKYGNAASED 145
              K+KIMEKYGNAASED
Sbjct: 336 SEHKDKIMEKYGNAASED 353

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115474617|ref|NP_001060905.1| Os08g0127700 [Oryza sativa Japonica Group] gi|75136283|sp|Q6ZK48.1|SLU7_ORYSJ RecName: Full=Pre-mRNA-splicing factor SLU7 gi|150417959|sp|A2YQU8.2|SLU7_ORYSI RecName: Full=Pre-mRNA-splicing factor SLU7 gi|42407714|dbj|BAD08862.1| putative step II splicing factor SLU7 [Oryza sativa Japonica Group] gi|113622874|dbj|BAF22819.1| Os08g0127700 [Oryza sativa Japonica Group] gi|215708746|dbj|BAG94015.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765271|dbj|BAG86968.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768211|dbj|BAH00440.1| unnamed protein product [Oryza sativa Japonica Group] gi|218200420|gb|EEC82847.1| hypothetical protein OsI_27673 [Oryza sativa Indica Group] gi|222639849|gb|EEE67981.1| hypothetical protein OsJ_25904 [Oryza sativa Japonica Group]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 105/138 (76%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSAYYDPK RSMRED  PD +PN
Sbjct: 217 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPN 276

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           +KFY G N+ R+ GQALE+KQ+NIHAW+A  +GQDIH +AA +QAEL ++  K  +EK +
Sbjct: 277 DKFYVGDNQNRLSGQALEFKQLNIHAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLK 336

Query: 128 LCKKEKIMEKYGNAASED 145
              K+KIMEKYGNAASE+
Sbjct: 337 SENKDKIMEKYGNAASEE 354

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567955|ref|XP_003552180.1| PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Glycine max]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 104/138 (75%)

Query: 8   LPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPN 67
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSA+YDPK RSMRED  PD +PN
Sbjct: 221 FAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPN 280

Query: 68  EKFYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKR 127
           EKFY G N+YR  GQALE+K++NIHAW+A  +GQD+H +AA +QAEL Y+  K ++EK +
Sbjct: 281 EKFYLGDNQYRNSGQALEFKELNIHAWEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLK 340

Query: 128 LCKKEKIMEKYGNAASED 145
              KE I+EKYGNAA ED
Sbjct: 341 YQTKETIIEKYGNAADED 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2018496	535	SMP1 "SWELLMAP 1" [Arabidopsis	0.937	0.254	0.602	3.4e-38
TAIR|locus:2115115	536	SMP2 "SWELLMAP 2" [Arabidopsis	0.931	0.251	0.607	6.3e-37
TAIR|locus:2077157	385	AT3G45950 [Arabidopsis thalian	0.937	0.353	0.551	1.6e-31
UNIPROTKB|O95391	586	SLU7 "Pre-mRNA-splicing factor	0.793	0.196	0.487	3.3e-23
MGI|MGI:2385598	585	Slu7 "SLU7 splicing factor hom	0.793	0.196	0.487	6.8e-23
UNIPROTKB|Q3ZBE5	586	SLU7 "Pre-mRNA-splicing factor	0.793	0.196	0.487	6.9e-23
UNIPROTKB|F1RR54	586	SLU7 "Uncharacterized protein"	0.793	0.196	0.487	6.9e-23
RGD|631432	586	Slu7 "SLU7 splicing factor hom	0.793	0.196	0.487	6.9e-23
UNIPROTKB|E2RRD5	633	SLU7 "Uncharacterized protein"	0.793	0.181	0.487	9.8e-23
ZFIN|ZDB-GENE-041114-62	619	slu7 "SLU7 splicing factor hom	0.813	0.190	0.476	3.1e-22

TAIR|locus:2018496 SMP1 "SWELLMAP 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 82/136 (60%), Positives = 104/136 (76%)

Query:    10 QVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEK 69
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSA+YDPK RSMRED  PD +PN+K
Sbjct:   219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNDK 278

Query:    70 FYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLC 129
             FY G N+YR  GQALE+KQ+NIH+W+A  +GQD+H +AA +QAEL Y+  +  +EK +  
Sbjct:   279 FYLGDNQYRNSGQALEFKQLNIHSWEAFDKGQDMHMQAAPSQAELLYKSFQVAKEKLKSQ 338

Query:   130 KKEKIMEKYGNAASED 145
              K+ IM+KYGNAA+ED
Sbjct:   339 TKDTIMDKYGNAATED 354

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=RCA;IMP

GO:0008380 "RNA splicing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0051276 "chromosome organization" evidence=RCA

TAIR|locus:2115115 SMP2 "SWELLMAP 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 82/135 (60%), Positives = 101/135 (74%)

Query:    10 QVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEK 69
             +V+K V   G G TGT R+LRIRED  KYLLNLD NSA+YDPK RSMRED  PD +PNEK
Sbjct:   219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEK 278

Query:    70 FYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLC 129
             FY G N+YR  GQALE+KQ+NIH+ +A  +G D+H +AA +QAEL Y+  K  +EK +  
Sbjct:   279 FYLGDNQYRNSGQALEFKQINIHSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQ 338

Query:   130 KKEKIMEKYGNAASE 144
              K+ IMEKYGNAA+E
Sbjct:   339 TKDTIMEKYGNAATE 353

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=IGI;RCA

GO:0008380 "RNA splicing" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051276 "chromosome organization" evidence=RCA

TAIR|locus:2077157 AT3G45950 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 75/136 (55%), Positives = 96/136 (70%)

Query:    10 QVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEK 69
             +VKK V     G  GT R+LRIRED  KYLLNLD NSAYYDPK RSMRED  P  +PNEK
Sbjct:   209 KVKKRVRTTDGGSKGTVRNLRIREDPAKYLLNLDVNSAYYDPKSRSMREDPLPYTDPNEK 268

Query:    70 FYAGYNRYRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLC 129
             F    N+YR  GQA+E+KQ N+++ +A  +GQDIH +AA +QAEL Y+  K  +EK    
Sbjct:   269 FCLRDNQYRNSGQAIEFKQQNMYSCEAFDKGQDIHMQAAPSQAELCYKRVKIAKEKLNSQ 328

Query:   130 KKEKIMEKYGNAASED 145
             +K+ I+ KYG+AA++D
Sbjct:   329 RKDAIIAKYGDAAAKD 344

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O95391 SLU7 "Pre-mRNA-splicing factor SLU7" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query:    25 TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
             T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct:   261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query:    83 ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
              +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct:   321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IDA

GO:0033554 "cellular response to stress" evidence=IDA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IDA

GO:0000389 "mRNA 3'-splice site recognition" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0000386 "second spliceosomal transesterification activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IDA

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=IDA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:2385598 Slu7 "SLU7 splicing factor homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 6.8e-23, Sum P(2) = 6.8e-23
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query:    25 TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
             T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct:   261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query:    83 ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
              +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct:   321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISO

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=ISO

GO:0000386 "second spliceosomal transesterification activity" evidence=ISO

GO:0000389 "mRNA 3'-splice site recognition" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=ISO

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISO

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=ISO

GO:0033554 "cellular response to stress" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|Q3ZBE5 SLU7 "Pre-mRNA-splicing factor SLU7" [Bos taurus (taxid:9913)]

 Score = 259 (96.2 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query:    25 TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
             T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct:   261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query:    83 ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
              +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct:   321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

GO:0005737 "cytoplasm" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0000389 "mRNA 3'-splice site recognition" evidence=IEA

GO:0000386 "second spliceosomal transesterification activity" evidence=IEA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RR54 SLU7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query:    25 TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
             T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct:   261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query:    83 ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
              +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct:   321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000389 "mRNA 3'-splice site recognition" evidence=IEA

GO:0000386 "second spliceosomal transesterification activity" evidence=IEA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|631432 Slu7 "SLU7 splicing factor homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query:    25 TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
             T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct:   261 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 320

Query:    83 ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
              +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct:   321 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 377

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISS

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=ISS

GO:0000386 "second spliceosomal transesterification activity" evidence=ISS

GO:0000389 "mRNA 3'-splice site recognition" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016607 "nuclear speck" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=ISS

GO:0033554 "cellular response to stress" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|E2RRD5 SLU7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 9.8e-23, Sum P(2) = 9.8e-23
 Identities = 57/117 (48%), Positives = 74/117 (63%)

Query:    25 TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
             T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP+E  YAG N  R  G 
Sbjct:   308 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGKNPDEVSYAGDNFVRYTGD 367

Query:    83 ALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYG 139
              +   Q  + AW+A  +G ++H +A  T+ EL Y+  K  +E  +  +KE I+EKYG
Sbjct:   368 TISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKESILEKYG 424

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000389 "mRNA 3'-splice site recognition" evidence=IEA

GO:0000386 "second spliceosomal transesterification activity" evidence=IEA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-041114-62 slu7 "SLU7 splicing factor homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 255 (94.8 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
 Identities = 60/126 (47%), Positives = 78/126 (61%)

Query:    25 TNRDLRIREDIPKYLLNLDENSAYYDPKIRSMRED--LNPDDNPNEKFYAGYNRYRMGGQ 82
             T R+LRIREDI KYL NLD NSAYYDPK R+MRE+   N   NP E  YAG N  R  G 
Sbjct:   294 TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYSNTGKNPEEVGYAGDNFVRYSGD 353

Query:    83 ALEWKQVNIHAWKASGRGQDIHPEAALTQAEL-H--YRWEKDIEEKKRLCKKEKIMEKYG 139
              +   Q  + AW+A  +G ++H +A  T+ EL H  Y+ +KD  ++K+   KE I+EKYG
Sbjct:   354 TISMAQTQLFAWEAYEKGSEVHLQADPTKLELLHQSYKVKKDDFKEKQ---KETILEKYG 410

Query:   140 NAASED 145
              +   D
Sbjct:   411 GSEHLD 416

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
pfam11708	236	pfam11708, Slu7, Pre-mRNA splicing Prp18-interacti	4e-40

>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor

 Score =  134 bits (338), Expect = 4e-40
 Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 2/129 (1%)

Query: 17  GNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNR 76
            + S    T R+LRIRED  KYLLNLD NSAYYDPK RSMR+D  P  +P +  +AG N 
Sbjct: 65  DSDSKTRTTVRNLRIREDTAKYLLNLDSNSAYYDPKSRSMRDD--PLADPEDVLFAGDNF 122

Query: 77  YRMGGQALEWKQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIME 136
            R+ G+ALE++++   AW+A+ +G D+H +A  T+ EL  + EK+ +E+ ++ KK+ ++E
Sbjct: 123 VRLSGEALEFEELQKFAWEAAEKGGDVHLQANPTKLELLRKKEKEKKEQLKIQKKQSLLE 182

Query: 137 KYGNAASED 145
           KYG     D
Sbjct: 183 KYGGEEHLD 191

The spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and U5) and proteins, catalyzes the excision of introns from pre-mRNAs in two successive trans-esterification reactions. Step 2 depends upon integral spliceosome constituents such as U5 snRNA and Prp8 and non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a conformational change in the spliceosome that leads to protection of the 3'ss from targeted RNase H cleavage. This change, which probably reflects binding of the 3'ss PyAG in the catalytic centre of the spliceosome, requires the ordered recruitment of Slu7, Prp18, and Prp22 to the spliceosome. There is a close functional relationship between Prp8, Prp18, and Slu7, and Prp18 interacts with Slu7, so that together they recruit Prp22 to the spliceosome. Most members of the family carry a zinc-finger of the CCHC-type upstream of this domain. Length = 236

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
PF11708	239	Slu7: Pre-mRNA splicing Prp18-interacting factor;	100.0
KOG2560	529	consensus RNA splicing factor - Slu7p [RNA process	100.0
COG2947	156	Uncharacterized conserved protein [Function unknow	80.02

>PF11708 Slu7: Pre-mRNA splicing Prp18-interacting factor; InterPro: IPR021715 The spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and U5) and proteins, catalyses the excision of introns from pre-mRNAs in two successive trans-esterification reactions

Probab=100.00  E-value=8.5e-57  Score=372.01  Aligned_cols=127  Identities=43%  Similarity=0.662  Sum_probs=120.7

Q ss_pred             ccccceecCCCCCCccccccccccChHHHhhcCCCCCCCCCCCCcccccCCCCCCCCCcccccCCCceeccccHHHHHHH
Q 032225           10 QVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGGQALEWKQV   89 (145)
Q Consensus        10 ~~d~~~r~~~~~~~~t~rnLRiREDtAkYL~NLd~nsa~YDPKSRsmRd~p~~~~~~~~~~fagdnF~R~sGe~~e~~~l   89 (145)
                      +.+.++||       |+|||||||||||||+|||+|||+|||||||||++|+  .++.+.+|+|+||||+|||+.+|++|
T Consensus        66 ~~~~k~~~-------t~rnLRiREDtAkYL~NLd~nsa~YDPKSRsmrd~p~--~~~~~~~~~gdnFvR~sGea~e~~~l  136 (239)
T PF11708_consen   66 KKDSKTRI-------TVRNLRIREDTAKYLLNLDSNSAYYDPKSRSMRDNPA--KDPGDVLFAGDNFVRLSGEAQEFEKL  136 (239)
T ss_pred             cccccccc-------ccccccccccHHHHHHhCCCCCccCCCCccccccCCC--CChhhccccccCceeccccHHHHHHH
Confidence            35566666       9999999999999999999999999999999999996  78889999999999999999999999


Q ss_pred             HHHHHHHhcCCC-ccccccCcCHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCcCCCC
Q 032225           90 NIHAWKASGRGQ-DIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNAASED  145 (145)
Q Consensus        90 q~fAWea~~kG~-~~hl~AnPT~~ell~k~~~~kke~~k~~~k~~ilekYGg~e~l~  145 (145)
                      |+||||++++|. +||||||||++|+|+|+++++|++++.+.+++||+||||++|+.
T Consensus       137 q~FAWea~~kg~~~~hl~AnPT~~E~l~k~~~~kk~~~~~~~k~~ll~kYGg~e~~~  193 (239)
T PF11708_consen  137 QRFAWEAAKKGGLDVHLQANPTKAELLRKEFKEKKEELKEEKKQSLLEKYGGEEHLD  193 (239)
T ss_pred             HHHHHHHHhccCCceeeeeCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            999999999998 99999999999999999999999999999999999999999863

Step 2 depends upon integral spliceosome constituents such as U5 snRNA and Prp8 and non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a conformational change in the spliceosome that leads to protection of the 3'ss from targeted RNase H cleavage. This change, which probably reflects binding of the 3'ss PyAG in the catalytic centre of the spliceosome, requires the ordered recruitment of Slu7, Prp18, and Prp22 to the spliceosome. There is a close functional relationship between Prp8, Prp18, and Slu7, and Prp18 interacts with Slu7, so that together they recruit Prp22 to the spliceosome. Most members of the family carry a zinc-finger of the CCHC-type upstream of this domain.

>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]

Probab=100.00  E-value=5.4e-52  Score=368.84  Aligned_cols=139  Identities=45%  Similarity=0.658  Sum_probs=134.3

Q ss_pred             cCcccccceecCCCCCCccccccccccChHHHhhcCCCCCCCCCCCCcccccCCCCCCCCCcccccCCCceeccccHHHH
Q 032225            7 ILPQVKKGVCGNGSGITGTNRDLRIREDIPKYLLNLDENSAYYDPKIRSMREDLNPDDNPNEKFYAGYNRYRMGGQALEW   86 (145)
Q Consensus         7 ~~~~~d~~~r~~~~~~~~t~rnLRiREDtAkYL~NLd~nsa~YDPKSRsmRd~p~~~~~~~~~~fagdnF~R~sGe~~e~   86 (145)
                      .+..+-+++|.+++|+++|||||||||||||||+|||+||+||||||||||++|+++.++.+..|.|+||||+|||+.+|
T Consensus       219 D~a~~~k~v~~~d~~s~iTvrnLRiRED~AkYL~nld~Nsa~YDPKSRsMReep~~~~~~~e~~~~gdnfvr~SGe~~~~  298 (529)
T KOG2560|consen  219 DFADMLKTVRDTDDGSRITVRNLRIREDTAKYLRNLDVNSAYYDPKSRSMREEPLPGKDPNEDEYSGDNFVRNSGEALEF  298 (529)
T ss_pred             hhhcccccccccCCCceeeeecceechhHHHHHHhcCCcccccCccccccccCCCCCCChhhhhhcccceeeccchhhhH
Confidence            35567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCccccccCcCHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCcCCCC
Q 032225           87 KQVNIHAWKASGRGQDIHPEAALTQAELHYRWEKDIEEKKRLCKKEKIMEKYGNAASED  145 (145)
Q Consensus        87 ~~lq~fAWea~~kG~~~hl~AnPT~~ell~k~~~~kke~~k~~~k~~ilekYGg~e~l~  145 (145)
                      ++||+|||||..+|+++|+||+||++|++++.++.+++.++.++++.||+||||.+|++
T Consensus       299 ~qlq~FAweA~~kG~~~H~~A~Ptk~Ell~k~~k~kke~lK~q~kq~il~kYG~~~~~d  357 (529)
T KOG2560|consen  299 NQLQMFAWEAFDKGVDVHMQADPTKLELLYKENKVKKETLKKQTKQEILDKYGGGEHKD  357 (529)
T ss_pred             HHHHHHHHHHhcccceeeeecCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999874

>COG2947 Uncharacterized conserved protein [Function unknown]

Probab=80.02  E-value=0.88  Score=36.53  Aligned_cols=13  Identities=54%  Similarity=0.986  Sum_probs=11.3

Q ss_pred             CCCCCCCCCCCCc
Q 032225           42 LDENSAYYDPKIR   54 (145)
Q Consensus        42 Ld~nsa~YDPKSR   54 (145)
                      .||+|.|||||+-
T Consensus        77 ~d~~spYyDPka~   89 (156)
T COG2947          77 FDPASPYYDPKAT   89 (156)
T ss_pred             cCCCCcccCcccc
Confidence            6899999999974

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00