Citrus Sinensis ID: 032246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFFWVGKICFCSFFLFFIPFLLFVK
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccEEHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccEEEccccEEEEccccccccEccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccEEEEEEEEEHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgsrgllllkgaapkhhifnntkgsifsskmptryyyydydynnrtrncsttttrssleppdvprlaqtarisltpheveefaPKIRQVIDWFgqlqdvdldsvdpalragfknpfqppfffwvgkicfcsfflffIPFLLFVK
Flexible Loop (DISEMBL)
MGSRGLLLLkgaapkhhifnntkgsifsskmptRYYYYDYDYNNRTRNCSTtttrssleppdvpRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFFWVGKICFCSFFLFFIPFLLFVK
Low Complexity Region (SEG)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPtryyyydydynnrtrncsttttrssLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFFWVGKicfcsfflffipfllfVK
Disordered region (IsUnstruct)
*****LLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRN***********************ISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFFWVGKICFCSFFLFFIPFLLFV*
Disordered Region (DISOPRED)
****GLL*LKGAAPKHHIFN*****************************************DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFFWVGKICFCSFFLFFIPFLLFVK
Disordered Region (DISEMBL)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCS***********DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFFWVGKICFCSFFLFFIPFLLFVK
Disordered Region (DISPRO)
*GSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRY**********************LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFFWVGKICFCSFFLFFIPFLLFVK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFFWVGKICFCSFFLFFIPFLLFVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
D7STK2	137	Glutamyl-tRNA(Gln) amidot	yes	no	0.659	0.693	0.590	1e-26
B9INH0	141	Glutamyl-tRNA(Gln) amidot	yes	no	0.659	0.673	0.517	2e-20
B9RRX2	143	Glutamyl-tRNA(Gln) amidot	N/A	no	0.409	0.412	0.779	3e-20
Q7XZZ1	153	Glutamyl-tRNA(Gln) amidot	yes	no	0.375	0.352	0.796	8e-20
A2XK57	153	Glutamyl-tRNA(Gln) amidot	N/A	no	0.375	0.352	0.796	8e-20
F4JV80	155	Glutamyl-tRNA(Gln) amidot	yes	no	0.777	0.722	0.478	2e-19
C5WR30	146	Glutamyl-tRNA(Gln) amidot	N/A	no	0.569	0.561	0.5	9e-18
A9P2J1	181	Glutamyl-tRNA(Gln) amidot	N/A	no	0.402	0.320	0.620	4e-15
Q5FND2	95	Aspartyl/glutamyl-tRNA(As	yes	no	0.409	0.621	0.406	2e-07
B0BZ26	96	Aspartyl/glutamyl-tRNA(As	yes	no	0.368	0.552	0.396	7e-05

>sp|D7STK2|GATC_VITVI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATC PE=3 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 76/110 (69%), Gaps = 15/110 (13%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
           MGSR LLLLK    +  +F  T  S FS  +            N TR+ ST   RS+L P
Sbjct: 1   MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45

Query: 61  PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RA
Sbjct: 46  PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRA 95

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Vitis vinifera (taxid: 29760)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -

>sp|B9INH0|GATC_POPTR Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa GN=GATC PE=3 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 68/114 (59%), Gaps = 19/114 (16%)

Query: 1   MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
           MGSR +LLLKG +P  H    + N+ K S   S               R      T   S
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW   L  VDLDSV+P++RA
Sbjct: 47  SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRA 99

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Populus trichocarpa (taxid: 3694)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B9RRX2|GATC_RICCO Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis GN=GATC PE=3 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query: 52  TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
            T  SSL+PPDV RLA+TARISL  +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RA
Sbjct: 43  ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRA 101

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Ricinus communis (taxid: 3988)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q7XZZ1|GATC_ORYSJ Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GATC PE=2 SV=1

 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 49/54 (90%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRAG
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAG 111

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A2XK57|GATC_ORYSI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica GN=GATC PE=3 SV=1

 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 49/54 (90%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRAG
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAG 111

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|F4JV80|GATC_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GATC PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 74/115 (64%), Gaps = 3/115 (2%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYD--YNNR-TRNCSTTTTRSS 57
           M +R LL +  A+P     + ++  I S    +  +YY      N+R  R+ S+ +  S 
Sbjct: 1   MATRALLAVIYASPNRCYISPSRIKIQSLTCSSSSHYYQRQSRKNHRIARSYSSDSDSSV 60

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGF 112
           L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA  
Sbjct: 61  LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEM 115

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|C5WR30|GATC_SORBI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Sorghum bicolor GN=GATC PE=3 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 54/82 (65%)

Query: 30  KMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQV 89
           + P    Y+    ++ +           LEPPD+ RLA  ARISL+P E E+F PKIRQV
Sbjct: 23  RRPAARTYWPRPLSSSSHVTPAAAGAGELEPPDLTRLANAARISLSPQEAEDFEPKIRQV 82

Query: 90  IDWFGQLQDVDLDSVDPALRAG 111
           +DWFGQLQ VDL+S++P+LRAG
Sbjct: 83  VDWFGQLQAVDLESIEPSLRAG 104

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Sorghum bicolor (taxid: 4558)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A9P2J1|GATC_PICSI Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Picea sitchensis GN=GATC PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 53  TTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           +  ++ E PDV +LA  ARISLTP EVE++ PKI QVIDWFGQLQ V+L++V+PA+RA
Sbjct: 79  SVHNNFEAPDVVQLAAKARISLTPKEVEDYGPKIGQVIDWFGQLQGVNLENVEPAIRA 136

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Picea sitchensis (taxid: 3332)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5FND2|GATC_GLUOX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Gluconobacter oxydans (strain 621H) GN=gatC PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNP 115
           SL+   V R+A+ ARI L P E+E     +  +IDW  QL++VD+  VDP +  G   P
Sbjct: 2   SLDAKTVTRIARLARIGLQPEEIETLGKDMGSIIDWVEQLKEVDVTGVDPMIGTGLAKP 60

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B0BZ26|GATC_ACAM1 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C OS=Acaryochloris marina (strain MBIC 11017) GN=gatC PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 35/53 (66%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           LE  +V ++A  AR+SLT  E E+F  ++  ++D+F QL ++D+  V+P  RA
Sbjct: 2   LERAEVDKVAHLARLSLTDAESEQFTTQLGDILDYFEQLSELDVAEVEPTTRA 54

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
225429410	137	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.659	0.693	0.590	9e-25
449436902	145	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.708	0.703	0.558	8e-22
449502831	145	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.708	0.703	0.558	8e-22
388491928	139	unknown [Lotus japonicus]	0.687	0.712	0.495	3e-19
356535682	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.472	0.475	0.705	3e-19
356576181	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.451	0.454	0.692	1e-18
224142842	141	predicted protein [Populus trichocarpa]	0.659	0.673	0.517	1e-18
255550886	143	Glutamyl-tRNA(Gln) amidotransferase subu	0.409	0.412	0.779	2e-18
357119986	143	PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gl	0.673	0.678	0.463	2e-18
115454377	153	Os03g0651000 [Oryza sativa Japonica Grou	0.375	0.352	0.796	5e-18

>gi|225429410|ref|XP_002275650.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Vitis vinifera] gi|353558764|sp|D7STK2.1|GATC_VITVI RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|296081596|emb|CBI20601.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 76/110 (69%), Gaps = 15/110 (13%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEP 60
           MGSR LLLLK    +  +F  T  S FS  +            N TR+ ST   RS+L P
Sbjct: 1   MGSRALLLLKATTAETLLF--TSKSTFSKAL----------IRNSTRSFST---RSALLP 45

Query: 61  PDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           PD+PRLA+TARISLTPHEVEEFAPKIRQVIDWFGQLQ VDL S++P++RA
Sbjct: 46  PDLPRLAETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRA 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436902|ref|XP_004136231.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 9/111 (8%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTT-TRSSLE 59
           MGS+ L LLKGA+     F + K  IF S   T ++      N   RN ST +   +SL+
Sbjct: 1   MGSKALPLLKGASS----FPSLKRQIFIS---TAFHSLPVS-NISIRNSSTASGISASLQ 52

Query: 60  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           PPDVPRLAQTARISLTP + EEFAPKI QV+DWFGQLQ VDL S++P++RA
Sbjct: 53  PPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRA 103

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502831|ref|XP_004161755.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/111 (55%), Positives = 76/111 (68%), Gaps = 9/111 (8%)

Query: 1   MGSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTT-TRSSLE 59
           MGS+ L LLKGA+     F + K  IF S   T ++      N   RN ST +   +SL+
Sbjct: 1   MGSKALPLLKGASS----FPSLKRQIFIS---TAFHSLPVS-NISIRNSSTASGISASLQ 52

Query: 60  PPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           PPDVPRLAQTARISLTP + EEFAPKI QV+DWFGQLQ VDL S++P++RA
Sbjct: 53  PPDVPRLAQTARISLTPTQAEEFAPKITQVVDWFGQLQTVDLQSIEPSIRA 103

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491928|gb|AFK34030.1| unknown [Lotus japonicus]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 18/117 (15%)

Query: 1   MGS-RGLLLL--KGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSS 57
           MGS +GL+LL  KGA+   H F         SK                R+ S+TT  SS
Sbjct: 1   MGSSKGLILLSSKGASSLSHSFAKVSSVGLHSKF---------------RSFSSTTICSS 45

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKN 114
            +PPD+  LA+ A+ISLTPH+V+EFAPKI+QVI+WFGQLQ VDL SV+P+LRA  +N
Sbjct: 46  TQPPDLTSLAKKAQISLTPHQVDEFAPKIQQVIEWFGQLQSVDLQSVEPSLRAESEN 102

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535682|ref|XP_003536373.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Glycine max]

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 60/68 (88%)

Query: 47  RNCSTTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           R+ S TTT SSL PPD+PRLA+TA+ISLTP+EVEE APKI+QVI+WFGQLQ VDL+SV+P
Sbjct: 39  RSFSLTTTCSSLLPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIEWFGQLQGVDLESVEP 98

Query: 107 ALRAGFKN 114
           ++RA  +N
Sbjct: 99  SIRAETEN 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576181|ref|XP_003556212.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Glycine max]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 58/65 (89%)

Query: 50  STTTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALR 109
           S+TT  SSL PPD+PRLA+TA+ISLTP+EVEE APKI+QVI+WFGQLQ +DL+SV+P++R
Sbjct: 42  SSTTACSSLPPPDLPRLAKTAQISLTPNEVEEIAPKIQQVIEWFGQLQGIDLESVEPSIR 101

Query: 110 AGFKN 114
           A  +N
Sbjct: 102 AETEN 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142842|ref|XP_002324749.1| predicted protein [Populus trichocarpa] gi|353558759|sp|B9INH0.1|GATC_POPTR RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|222866183|gb|EEF03314.1| predicted protein [Populus trichocarpa]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 68/114 (59%), Gaps = 19/114 (16%)

Query: 1   MGSRGLLLLKGAAPKHH----IFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRS 56
           MGSR +LLLKG +P  H    + N+ K S   S               R      T   S
Sbjct: 1   MGSRAVLLLKGPSPPKHSILFLLNHKKISPAPSI--------------RRFTTKATANGS 46

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
           SLEPPDV RLA+TARISLTP +VEEF PKIRQVIDW   L  VDLDSV+P++RA
Sbjct: 47  SLEPPDVARLAETARISLTPQQVEEFGPKIRQVIDWHALLS-VDLDSVEPSIRA 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550886|ref|XP_002516491.1| Glutamyl-tRNA(Gln) amidotransferase subunit C, putative [Ricinus communis] gi|353558760|sp|B9RRX2.1|GATC_RICCO RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|223544311|gb|EEF45832.1| Glutamyl-tRNA(Gln) amidotransferase subunit C, putative [Ricinus communis]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query: 52  TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
            T  SSL+PPDV RLA+TARISL  +EVEEFAPKIRQVIDWFGQLQ VDL+SV+PA+RA
Sbjct: 43  ATNGSSLQPPDVSRLAETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRA 101

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119986|ref|XP_003561713.1| PREDICTED: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C-like [Brachypodium distachyon]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 67/110 (60%), Gaps = 13/110 (11%)

Query: 2   GSRGLLLLKGAAPKHHIFNNTKGSIFSSKMPTRYYYYDYDYNNRTRNCSTTTTRSSLEPP 61
            + G+  L+ AAP  H    T+  + SS  PTR                       LEPP
Sbjct: 5   AASGIPRLRWAAPPRHTLARTQWLLLSSS-PTRTPAP------------AAAGPGGLEPP 51

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
           D+PRLA++ARISL+P E EEF+PKI+QV+DWFGQLQ VDL+ ++P+LRAG
Sbjct: 52  DLPRLAKSARISLSPEEAEEFSPKIQQVVDWFGQLQAVDLECIEPSLRAG 101

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115454377|ref|NP_001050789.1| Os03g0651000 [Oryza sativa Japonica Group] gi|75271878|sp|Q7XZZ1.1|GATC_ORYSJ RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|353558757|sp|A2XK57.1|GATC_ORYSI RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Short=Glu-AdT subunit C; Flags: Precursor gi|31712092|gb|AAP68396.1| unknown protein [Oryza sativa Japonica Group] gi|62733418|gb|AAX95535.1| Putative Glutamyl-tRNA(Gln) amidotransferase, C subunit [Oryza sativa Japonica Group] gi|108710125|gb|ABF97920.1| glutamyl-tRNA amidotransferase, C subunit family protein, expressed [Oryza sativa Japonica Group] gi|113549260|dbj|BAF12703.1| Os03g0651000 [Oryza sativa Japonica Group] gi|125545078|gb|EAY91217.1| hypothetical protein OsI_12826 [Oryza sativa Indica Group] gi|125587301|gb|EAZ27965.1| hypothetical protein OsJ_11926 [Oryza sativa Japonica Group] gi|215767743|dbj|BAG99971.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 49/54 (90%)

Query: 58  LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
           LEPPD+PRLA  ARISL+P E EEFAPKIRQV+DWFGQLQ VDL+SV+P+LRAG
Sbjct: 58  LEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAG 111

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:505006545	155	AT4G32915 "AT4G32915" [Arabido	0.368	0.341	0.754	8.6e-17
TIGR_CMR|APH_1113	106	APH_1113 "glutamyl-tRNA(Gln) a	0.347	0.471	0.32	3e-05

TAIR|locus:505006545 AT4G32915 "AT4G32915" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 40/53 (75%), Positives = 47/53 (88%)

Query:    58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA 110
             L+PPDV RLAQTARISLTP E+EE   KIR+VIDWFGQLQ VD++SV+PA+RA
Sbjct:    61 LQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRA 113

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006450 "regulation of translational fidelity" evidence=IEA

TIGR_CMR|APH_1113 APH_1113 "glutamyl-tRNA(Gln) amidotransferase, C subunit" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query:    62 DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAG 111
             ++ R+++  R+ +   EV+ +  ++  V+ WFG L +VD   VDP L  G
Sbjct:    17 ELARVSKLVRLQIPEEEVDTYCRQLGDVVSWFGMLAEVDTTDVDPVLHGG 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       103   0.00091  102 3  11 22  0.40    30
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.95u 0.11s 10.06t   Elapsed:  00:00:01
  Total cpu time:  9.95u 0.11s 10.06t   Elapsed:  00:00:01
  Start:  Fri May 10 23:03:25 2013   End:  Fri May 10 23:03:26 2013

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D7STK2	GATC_VITVI	6, ., 3, ., 5, ., -	0.5909	0.6597	0.6934	yes	no
B9INH0	GATC_POPTR	6, ., 3, ., 5, ., -	0.5175	0.6597	0.6737	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
COG0721	96	COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransf	1e-08
PRK00034	95	PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransf	5e-08
TIGR00135	93	TIGR00135, gatC, aspartyl/glutamyl-tRNA(Asn/Gln) a	1e-07
pfam02686	72	pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransfera	6e-06

>gnl|CDD|223793 COG0721, GatC, Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 16/45 (35%), Positives = 30/45 (66%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  LA+ AR+ L+  E+E+FA ++  ++ +  QL +VD + V+P
Sbjct: 7   EVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEP 51

Length = 96

>gnl|CDD|178810 PRK00034, gatC, aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed

 Score = 47.5 bits (114), Expect = 5e-08
 Identities = 17/51 (33%), Positives = 34/51 (66%)

Query: 56  SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
            ++   +V  LA+ AR+ L+  E+E+FA ++ +++D+  QL +VD + V+P
Sbjct: 1   MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEP 51

Length = 95

>gnl|CDD|129241 TIGR00135, gatC, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  LA+ AR+ L+  E E FA  + +++D+  QL +VD ++V+P
Sbjct: 5   EVKHLAKLARLELSEEEAESFAGDLDEILDYVEQLNEVDTENVEP 49

Archaea, organelles, and many bacteria charge Gln-tRNA by first misacylating it with Glu and then amidating Glu to Gln. This small protein is part of the amidotransferase heterotrimer and appears to be important to the stability of the amidase subunit encode by gatA, but its function may not be required in every organism that expresses gatA and gatB. The seed alignment for This model does not include any eukaryotic sequence and is not guaranteed to find eukaryotic examples, although it does find some. Saccharomyces cerevisiae, which expresses the amidotransferase for mitochondrial protein translation, seems to lack a gatC ortholog. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model [Protein synthesis, tRNA aminoacylation]. Length = 93

>gnl|CDD|217186 pfam02686, Glu-tRNAGln, Glu-tRNAGln amidotransferase C subunit

 Score = 41.3 bits (98), Expect = 6e-06
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 74  LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGF-KNPF 116
           L+  E+E+F  ++ +++D+  QL +VD + V+P        N  
Sbjct: 1   LSEEELEKFTKQLNKILDYVEQLNEVDTEGVEPTSHPLDLTNVL 44

This is a family of Glu-tRNAGln amidotransferase C subunits. The Glu-tRNA Gln amidotransferase enzyme itself is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln. This activity supplements the lack of glutaminyl-tRNA synthetase activity in gram-positive eubacterteria, cyanobacteria, Archaea, and organelles. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
COG0721	96	GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C su	99.82
TIGR00135	93	gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	99.82
PRK00034	95	gatC aspartyl/glutamyl-tRNA amidotransferase subun	99.82
PRK12821	477	aspartyl/glutamyl-tRNA amidotransferase subunit C-	99.75
PRK12820	706	bifunctional aspartyl-tRNA synthetase/aspartyl/glu	99.57
PF02686	72	Glu-tRNAGln: Glu-tRNAGln amidotransferase C subuni	99.44
TIGR01827	73	gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransfer	97.98
KOG4247	175	consensus Mitochondrial DNA polymerase accessory s	95.18
PF13318	50	DUF4089: Protein of unknown function (DUF4089)	83.01

>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=1.5e-20  Score=137.13  Aligned_cols=67  Identities=25%  Similarity=0.490  Sum_probs=65.3

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        56 M~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      |.|+.++|+|||+||||+++|+|.+.++.+|++|++||++|+++||+||+|++|+ +..|+||||++.
T Consensus         1 ~~i~~e~v~~la~LarL~lseee~e~~~~~l~~Il~~veql~evD~~~vep~~~~~~~~~~lReD~~~   68 (96)
T COG0721           1 MAIDREEVKHLAKLARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEVSNVLREDEVT   68 (96)
T ss_pred             CccCHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccCCCCC
Confidence            6799999999999999999999999999999999999999999999999999999 999999999985

>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit

Probab=99.82  E-value=3.9e-20  Score=131.78  Aligned_cols=65  Identities=26%  Similarity=0.436  Sum_probs=63.1

Q ss_pred             CChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           58 LEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        58 Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      ||+++|+|||+||||+|+++|++++.++|++|++|+++|+++||+||+||+|+ +..++||||++.
T Consensus         1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~il~~~~~L~~vdt~~v~p~~~~~~~~~~lReD~~~   66 (93)
T TIGR00135         1 ISDEEVKHLAKLARLELSEEEAESFAGDLDKILGFVEQLNEVDTENVEPMTHPLEISNVLREDEPE   66 (93)
T ss_pred             CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccCccccccCCCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999 888999999985

This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.

>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed

Probab=99.82  E-value=5e-20  Score=131.00  Aligned_cols=67  Identities=28%  Similarity=0.538  Sum_probs=65.3

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        56 M~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      |+|++++|+|||+||||+++++|++.+.++|++|++|+++|+++||+||+|++|+ +..++||+|++.
T Consensus         1 M~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~il~~~~~l~~vd~~~vep~~~~~~~~~~lReD~~~   68 (95)
T PRK00034          1 MAITREEVKHLAKLARLELSEEELEKFAGQLNKILDFVEQLNEVDTEGVEPTTHPLDMKNVLREDVVT   68 (95)
T ss_pred             CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccCcccccCCCCCCCCC
Confidence            6899999999999999999999999999999999999999999999999999999 889999999984

>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional

Probab=99.75  E-value=1.9e-18  Score=154.52  Aligned_cols=67  Identities=18%  Similarity=0.327  Sum_probs=64.5

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC--CCCCCCCCCccc
Q 032246           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA--GFKNPFQPPFFF  122 (144)
Q Consensus        56 M~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp--~~~NvLREDv~~  122 (144)
                      +++++|||+|+|+||||+++|||++++.+|+++|++++|+|+|+||+|||||.||  +..|+||||++.
T Consensus       387 ~~ItkEeVkKLAkLARLeLSEEElEkl~~dLn~ILdyVEkLnEVDTegVEPM~hp~e~~~nvLREDeV~  455 (477)
T PRK12821        387 QQLNKDELKKLARLVMFDLDDAELEKLQVEFKDITSSFKQVEKIDTTNVKPMYAPFSNSPTPLRKDKDV  455 (477)
T ss_pred             ccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcCCCCCcccCcccccCCCCCCCCC
Confidence            6899999999999999999999999999999999999999999999999999999  478999999984

>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional

Probab=99.57  E-value=4.7e-15  Score=138.26  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=64.5

Q ss_pred             CCCCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           53 TTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        53 ~~~M~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      .++..=++++|+|||+||||+|+|+|++.++++|++||+||++|++||| +|+||+|| +..|+||||++.
T Consensus       607 ~~~~~~~~~~V~~iA~LARL~l~eeE~~~~~~~L~~IL~~ve~L~evdt-~VeP~~~~~~~~~~lReD~v~  676 (706)
T PRK12820        607 LPGDAEKEDLIDHLSWVSRIGFAEAERAAIESALADAEELAAQLEDIAC-DEEPLFSPAPAANRMGEGLEA  676 (706)
T ss_pred             ccccccchHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCcCccccccCCCCCcCC
Confidence            3444678999999999999999999999999999999999999999999 59999999 999999999985

>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation

Probab=99.44  E-value=6.9e-14  Score=94.27  Aligned_cols=49  Identities=27%  Similarity=0.543  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           74 LTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        74 L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      |+|+|++.+.++|++|++||++|+++||+||+||+|+ +..++||+|++.
T Consensus         1 l~eeE~~~~~~~l~~il~~~~~l~~vdt~~v~p~~~~~~~~~~lReD~~~   50 (72)
T PF02686_consen    1 LTEEELEKLTKQLNDILDYVEKLQEVDTEGVEPMYHPVEMSNPLREDEVE   50 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHTTGGGS--TT----S-SS-SS--EB-S---
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccccCCCCCCCCC
Confidence            6899999999999999999999999999999999999 999999999973

The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....

>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative

Probab=97.98  E-value=7.6e-06  Score=57.50  Aligned_cols=38  Identities=16%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             HHHHHHHHH-HHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           83 APKIRQVID-WFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        83 ~~eLn~IL~-~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      .++-.+|++ +-++|++||  ||+||+|+ +..|+||||+..
T Consensus         3 ~~~~~~~~~~~~e~L~evd--~VeP~~~~~~~~n~lReD~~~   42 (73)
T TIGR01827         3 LKEAEEILEEFSERLEDVD--EEEETYYISDGSNKFREDEEP   42 (73)
T ss_pred             HHHHHHHHHHHHHHHHccC--CCCCcccccccccCCCCCcCC
Confidence            344445553 557899999  99999999 999999999985

This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.

>KOG4247 consensus Mitochondrial DNA polymerase accessory subunit [Replication, recombination and repair]

Probab=95.18  E-value=0.039  Score=43.71  Aligned_cols=65  Identities=14%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             CCCCCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC--CCCCCCCCC
Q 032246           52 TTTRSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA--GFKNPFQPP  119 (144)
Q Consensus        52 ~~~~M~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp--~~~NvLRED  119 (144)
                      ...|-+|+.+.+.|+..|+-..++.|+   ....|..-+.-...|.-||.+|||||-.+  +.+.+-=||
T Consensus        42 lspmpqidaklinhlerlslvrfdseq---avanlrssirvakrlelvdvegvepmhtvwedqecptfed  108 (175)
T KOG4247|consen   42 LSPMPQIDAKLINHLERLSLVRFDSEQ---AVANLRSSIRVAKRLELVDVEGVEPMHTVWEDQECPTFED  108 (175)
T ss_pred             cCCcchhhHHHHHHHHhhhheeecHHH---HHHHHHHHHhHHhheeeeeccCccchhhhcccccCCcccc
Confidence            345678999999999999999998776   45677778888899999999999999766  444444444

>PF13318 DUF4089: Protein of unknown function (DUF4089)

Probab=83.01  E-value=5.4  Score=26.11  Aligned_cols=41  Identities=10%  Similarity=0.101  Sum_probs=38.1

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 032246           63 VPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDS  103 (144)
Q Consensus        63 VkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTeg  103 (144)
                      |+..+.+--|.|+|+-.+.+..++..|..+.+.+.+...++
T Consensus         2 v~~~a~llgL~l~~~~r~~V~~n~~ri~~mA~~v~~fpL~~   42 (50)
T PF13318_consen    2 VDQMAALLGLPLDEEWRPGVVANFERIAAMAQLVMEFPLPD   42 (50)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            56789999999999999999999999999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	2e-11
3h0l_C	94	Glutamyl-tRNA(Gln) amidotransferase subunit C; mul	8e-11
3kfu_G	92	Glutamyl-tRNA(Gln) amidotransferase subunit C; ASP	3e-10

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C Length = 100

 Score = 55.6 bits (135), Expect = 2e-11
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 56  SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           + +   +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P
Sbjct: 2   TKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEP 52

>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C* Length = 94

 Score = 54.1 bits (131), Expect = 8e-11
 Identities = 15/55 (27%), Positives = 34/55 (61%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPF 116
            V ++A+ AR+ L   E+E F  ++  ++D+  QL+++D ++V+P ++   + P 
Sbjct: 6   WVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEETPM 60

>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 92

 Score = 52.6 bits (127), Expect = 3e-10
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 57  SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
            L P  + +L   A+I L+P E       +++++D+   L  V+    + 
Sbjct: 5   ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEE 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	99.89
3h0l_C	94	Glutamyl-tRNA(Gln) amidotransferase subunit C; mul	99.85
3kfu_G	92	Glutamyl-tRNA(Gln) amidotransferase subunit C; ASP	99.81
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.71

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C

Probab=99.89  E-value=3.8e-23  Score=149.56  Aligned_cols=68  Identities=22%  Similarity=0.430  Sum_probs=65.0

Q ss_pred             CCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        55 ~M~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      ||+||+++|+|||+||||+|+|+|++.+.++|++|++||++|++|||+||+||+|+ +..|+||||++.
T Consensus         1 Mm~i~~e~v~~iA~LArL~l~eeE~~~~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~~~~lReD~v~   69 (100)
T 3ip4_C            1 MTKVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAI   69 (100)
T ss_dssp             --CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCCSCCCCCCBCSCCC
T ss_pred             CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999 999999999986

>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*

Probab=99.85  E-value=8e-22  Score=141.07  Aligned_cols=65  Identities=23%  Similarity=0.451  Sum_probs=62.7

Q ss_pred             CCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        57 ~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      +||+++|+|||+||||+++|+|++.+.++|++|++||++|+++||+||+||+|+ +. |+||||++.
T Consensus         1 ~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~-~~lReD~v~   66 (94)
T 3h0l_C            1 MVDREWVLKIAKLARLELKEEEIEVFQKQLSDILDFIDQLKELDTENVEPYIQEFEE-TPMREDEPH   66 (94)
T ss_dssp             -CCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTTGGGSCCTTCCCCCCCCSS-CCCBCSCCC
T ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccCcccc-cCCCCCCCC
Confidence            489999999999999999999999999999999999999999999999999999 88 999999986

>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=99.81  E-value=4.4e-20  Score=131.89  Aligned_cols=62  Identities=18%  Similarity=0.282  Sum_probs=59.4

Q ss_pred             CCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCCCCCCCCCCccc
Q 032246           56 SSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRAGFKNPFQPPFFF  122 (144)
Q Consensus        56 M~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp~~~NvLREDv~~  122 (144)
                      |+||+++|+|||+||||+++|+|++.++++|++|++|+++|++|||+||+|     ..|+||||++.
T Consensus         4 M~i~~e~V~~iA~LArL~l~eeE~~~~~~~l~~Il~~ve~L~evDt~~VeP-----~~~~lReD~v~   65 (92)
T 3kfu_G            4 MELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEE-----ALGRLREDEPR   65 (92)
T ss_dssp             -CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCC-----CCCCCBCSCCC
T ss_pred             CccCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CcCCCCCCCCC
Confidence            789999999999999999999999999999999999999999999999999     68999999985

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=99.71  E-value=4e-18  Score=153.92  Aligned_cols=69  Identities=17%  Similarity=0.274  Sum_probs=65.3

Q ss_pred             CCCCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCcccc
Q 032246           55 RSSLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFFW  123 (144)
Q Consensus        55 ~M~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~~  123 (144)
                      ||+||+++|+|||+||||+++|+|++.++++|++|++||++|++|||+|||||+|+ +..|+||||++.-
T Consensus         2 ~m~i~~e~v~~iA~LArL~l~eee~~~~~~~l~~Il~~ve~L~evDt~~Vep~~~~~~~~~~lReD~v~~   71 (592)
T 3al0_C            2 GIKVTKDLVLHLENLARLELSEDQRESLMKDFQEILDYVELLNEVDVEGVEPMYTPVEDSAKLRKGDPRF   71 (592)
T ss_dssp             --CCCSTHHHHHHTTTTCCCCSSSHHHHHHHHHHHHHHHTTTCSSCCSSCCCCSCCSCSCCCCBCCCCCC
T ss_pred             CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcCcccccccccCCCCcCCC
Confidence            58899999999999999999999999999999999999999999999999999999 9999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d2f2ac1	92	a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C	1e-11

>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]} Length = 92

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Glu-tRNAGln amidotransferase C subunit
family: Glu-tRNAGln amidotransferase C subunit
domain: Glu-tRNAGln amidotransferase C subunit, GatC
species: Staphylococcus aureus [TaxId: 1280]

 Score = 55.1 bits (133), Expect = 1e-11
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 62  DVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDP 106
           +V  +A  AR+ ++P E EE A  +  ++D+  Q    D + V+P
Sbjct: 6   EVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEP 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d2f2ac1	92	Glu-tRNAGln amidotransferase C subunit, GatC {Stap	99.84

>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Glu-tRNAGln amidotransferase C subunit
family: Glu-tRNAGln amidotransferase C subunit
domain: Glu-tRNAGln amidotransferase C subunit, GatC
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.84  E-value=1.6e-21  Score=136.40  Aligned_cols=66  Identities=23%  Similarity=0.444  Sum_probs=64.1

Q ss_pred             CCChhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCC-CCCCCCCCCccc
Q 032246           57 SLEPPDVPRLAQTARISLTPHEVEEFAPKIRQVIDWFGQLQDVDLDSVDPALRA-GFKNPFQPPFFF  122 (144)
Q Consensus        57 ~Is~EeVkkLA~LARL~L~EEEle~l~~eLn~IL~~~d~L~eVDTegVEPm~hp-~~~NvLREDv~~  122 (144)
                      +||+++|+|||+||||+|+|+|++.+.++|++|++||++|+++||+||+||+|| +..|+||+|++.
T Consensus         1 KIs~e~i~~lA~LarL~l~deE~~~~~~~l~~Il~~~~~L~~vDt~~vep~~~~~~~~~~lReD~~~   67 (92)
T d2f2ac1           1 KVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAI   67 (92)
T ss_dssp             CCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHHHHGGGGGSCCTTCCCCSCSSCCCCCCBCCCCC
T ss_pred             CCCHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCccccccccCCCCCcCC
Confidence            589999999999999999999999999999999999999999999999999999 999999999974