Citrus Sinensis ID: 032249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKAA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MNSNQLQHQVLYMRRSLfdqgyldseqliqledlqddanpnFVEEVVSLFYSDSARLIQNIEQtlsnrpvdfsrlDDILHQFkgscssigakKVKDACSQFREYcnagnaegcsrSFQLIKQEYETLRRRLESYFQMVKQAKAA
Flexible Loop (DISEMBL)
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFkgscssigaKKVKDACSQFREYCNAgnaegcsrsfQLIKQEYETLRRRLESYFQMVKQAKAA
Low Complexity Region (SEG)
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKAA
Disordered region (IsUnstruct)
********QVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQ********
Disordered Region (DISOPRED)
***************SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQA***
Disordered Region (DISEMBL)
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKAA
Disordered Region (DISPRO)
*NSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKAA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQExxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q9LU15	127	Histidine-containing phos	no	no	0.805	0.913	0.658	2e-40
Q9ZNV8	156	Histidine-containing phos	no	no	0.937	0.865	0.459	3e-27
Q9ZNV9	154	Histidine-containing phos	no	no	0.895	0.837	0.453	1e-25
Q8L9T7	157	Histidine-containing phos	no	no	0.958	0.878	0.443	2e-25
Q9SAZ5	155	Histidine-containing phos	no	no	0.965	0.896	0.418	2e-24
Q6VAK4	149	Histidine-containing phos	no	no	0.986	0.953	0.375	1e-22
Q9SSC9	154	Histidine-containing phos	no	no	0.965	0.902	0.340	4e-11

>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 94/117 (80%), Gaps = 1/117 (0%)

Query: 20  QGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDIL 79
           QGYLD EQ ++LE+LQDDANPNFVEEV +L++ DSARLI NI+Q L     DF+RLD  +
Sbjct: 9   QGYLD-EQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYM 67

Query: 80  HQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQ 136
           HQFKGS +SIGA KVK  C+ FREYC AGNAEGC R+FQ +K+E+ TLR++LE YFQ
Sbjct: 68  HQFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQ 124

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 88/137 (64%), Gaps = 2/137 (1%)

Query: 5   QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
           QLQ Q      SL+ QG+LD +Q  +L+ LQDD +P+FV EV+SLF+ D  +LI N+ + 
Sbjct: 7   QLQRQFRDYTISLYQQGFLD-DQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65

Query: 65  L-SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQE 123
           L +   VDFS++   +HQ KGS SS+GAK+VK  C  F+E C A N EGC R  Q +  E
Sbjct: 66  LDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIE 125

Query: 124 YETLRRRLESYFQMVKQ 140
           Y+ L+ +L+  F + KQ
Sbjct: 126 YKALKTKLQDMFNLEKQ 142

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 1/130 (0%)

Query: 15  RSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSR 74
           +SLF +G LDS+ L   + LQD++NP+FV +VV+LF+ DS R++ ++  +L  + VDF +
Sbjct: 15  KSLFLEGILDSQFLQLQQ-LQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKK 73

Query: 75  LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134
           +D  +HQ KGS SSIGA++VK+AC  FR +C   N E C R  Q +KQEY  ++ RLE+ 
Sbjct: 74  VDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETL 133

Query: 135 FQMVKQAKAA 144
           F++ +Q  A+
Sbjct: 134 FKLEQQIVAS 143

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 89/142 (62%), Gaps = 4/142 (2%)

Query: 5   QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
           QLQ Q      SL+ QG+LD+ Q  +L  LQD+  P+FV EVVSLF+ D ++LI  +  +
Sbjct: 8   QLQRQFQDYIVSLYQQGFLDN-QFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSIS 66

Query: 65  LSNRP--VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQ 122
           L  RP  VDF ++D  +HQ KGS SS+GA++VK+ C  F+E C+  N EGC R  Q +  
Sbjct: 67  LE-RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDY 125

Query: 123 EYETLRRRLESYFQMVKQAKAA 144
           EY+ L+ +L+  F + KQ   A
Sbjct: 126 EYKMLKTKLQDLFNLEKQILQA 147

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 87/141 (61%), Gaps = 2/141 (1%)

Query: 5   QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
           QLQ +      SL+ QG+LD +Q  +L+ LQD+ +P+FV EVV+LF+ D  +LI N+ + 
Sbjct: 7   QLQRRFCDFTISLYHQGFLD-DQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARA 65

Query: 65  LSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQE 123
           L     VDF  +   +HQ KGS SS+GAK+VK  C   +E C++ N EGC R  Q +  E
Sbjct: 66  LDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIE 125

Query: 124 YETLRRRLESYFQMVKQAKAA 144
           Y+TL+ +L+  F + +Q   A
Sbjct: 126 YKTLKAKLQDLFNLEQQIVQA 146

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 88/144 (61%), Gaps = 2/144 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQ 59
           M +  L+ Q+  +  S+F QG +D EQ  QL+ LQD+   P FV EVV+LF  D+ R+I 
Sbjct: 1   MAAAALRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIIN 59

Query: 60  NIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQL 119
            I   L    V+F ++D  +HQ KGS +S+GA+KVK  C QFR++C   + +GC  +  +
Sbjct: 60  EIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAV 119

Query: 120 IKQEYETLRRRLESYFQMVKQAKA 143
           ++ ++  LR + ++  Q+ +Q +A
Sbjct: 120 VRNDFYDLRNKFQTMLQLEQQIQA 143

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 86/141 (60%), Gaps = 2/141 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           +  ++LQ  +  +  SLF QG +  EQ +QL+ LQD+ +PNFV +V+++++ +S +L++N
Sbjct: 4   LGVDRLQADINRLLASLFHQG-VLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRN 62

Query: 61  IEQTLSNRPV-DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQL 119
           +   L +R   D+ ++   L+Q  GS SSIGA++V++ C  FR      N  GC R  ++
Sbjct: 63  LRLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEV 122

Query: 120 IKQEYETLRRRLESYFQMVKQ 140
           ++ EY  L+  +   FQ+ +Q
Sbjct: 123 VEHEYHYLKNMMHELFQLEQQ 143

Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
147818916	144	hypothetical protein VITISV_008201 [Viti	0.993	0.993	0.715	5e-55
359475915	161	PREDICTED: histidine-containing phosphot	0.937	0.838	0.735	2e-53
224092264	147	histidine phosphotransfer protein [Popul	0.993	0.972	0.717	2e-53
255550962	169	Histidine-containing phosphotransfer pro	0.951	0.810	0.717	2e-53
298103702	147	putative histidine phosphotransfer prote	0.993	0.972	0.703	3e-52
449461335	144	PREDICTED: histidine-containing phosphot	0.979	0.979	0.659	1e-51
391349165	150	histidine phosphotransfer protein [Popul	0.993	0.953	0.680	2e-50
224054404	224	histidine phosphotransfer protein [Popul	0.993	0.638	0.680	2e-50
298103710	137	putative histidine phosphotransfer prote	0.944	0.992	0.702	2e-50
449515458	137	PREDICTED: histidine-containing phosphot	0.951	1.0	0.656	1e-49

>gi|147818916|emb|CAN69375.1| hypothetical protein VITISV_008201 [Vitis vinifera] gi|296081566|emb|CBI20571.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/144 (71%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M  N LQ QV YMRRSLFDQGYLD EQ +QLEDLQDDANPNFVEE+V+LFY+DSARLI N
Sbjct: 1   MERNPLQRQVAYMRRSLFDQGYLD-EQFVQLEDLQDDANPNFVEEIVTLFYTDSARLIHN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           IEQ L +RP+DF RLDD +HQFKGS SSIGAKKVK+ C+QFRE+C+A +AEGC R+FQ +
Sbjct: 60  IEQALESRPLDFIRLDDYMHQFKGSSSSIGAKKVKNECTQFREHCSARSAEGCVRTFQQV 119

Query: 121 KQEYETLRRRLESYFQMVKQAKAA 144
           KQE+  LRR+LE+YFQ+ +QA  A
Sbjct: 120 KQEHTILRRKLETYFQLARQAGLA 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475915|ref|XP_002277778.2| PREDICTED: histidine-containing phosphotransfer protein 4-like [Vitis vinifera]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/136 (73%), Positives = 117/136 (86%), Gaps = 1/136 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M  N LQ QV YMRRSLFDQGYLD EQ +QLEDLQDDANPNFVEE+V+LFY+DSARLI N
Sbjct: 1   MERNPLQRQVAYMRRSLFDQGYLD-EQFVQLEDLQDDANPNFVEEIVTLFYTDSARLIHN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           IEQ L +RP+DF RLDD +HQFKGS SSIGAKKVK+ C+QFRE+C+A +AEGC R+FQ +
Sbjct: 60  IEQALESRPLDFIRLDDYMHQFKGSSSSIGAKKVKNECTQFREHCSARSAEGCVRTFQQV 119

Query: 121 KQEYETLRRRLESYFQ 136
           KQE+  LRR+LE+YFQ
Sbjct: 120 KQEHTILRRKLETYFQ 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092264|ref|XP_002309533.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222855509|gb|EEE93056.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/145 (71%), Positives = 120/145 (82%), Gaps = 2/145 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+  QLQHQV   RRSLFDQGYLD +Q IQLE LQD+ANPNFVEEVV LFYSDS RLIQN
Sbjct: 1   MDRKQLQHQVASTRRSLFDQGYLD-DQFIQLEHLQDEANPNFVEEVVRLFYSDSVRLIQN 59

Query: 61  IEQTLSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQL 119
           IEQ + N+P +DF +LDD +HQFKGS SSIGAKKV   CS+FREYC AGN EGC ++FQL
Sbjct: 60  IEQAMINKPNIDFGKLDDYMHQFKGSSSSIGAKKVMKECSKFREYCYAGNIEGCIKTFQL 119

Query: 120 IKQEYETLRRRLESYFQMVKQAKAA 144
           +KQE+ TLRR+LE+YFQ+VKQA  A
Sbjct: 120 LKQEHATLRRKLETYFQLVKQAGLA 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550962|ref|XP_002516529.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223544349|gb|EEF45870.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+   L HQ+ YMR+SLFDQGYLD +Q +QLEDLQDDANPNFVEE+V+ FY DSARLIQN
Sbjct: 1   MDRKHLHHQIGYMRKSLFDQGYLD-DQFMQLEDLQDDANPNFVEEIVTSFYGDSARLIQN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           IEQ L NRPVDF +LDD +HQFKGS SSIGAKKVK  C+QFREYC AGN EGC R+F+ +
Sbjct: 60  IEQALVNRPVDFGKLDDYMHQFKGSSSSIGAKKVKMECTQFREYCCAGNIEGCIRTFKQL 119

Query: 121 KQEYETLRRRLESYFQMV 138
           KQE+ TLRR+LE+YFQ++
Sbjct: 120 KQEHATLRRKLETYFQVI 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298103702|emb|CBM42552.1| putative histidine phosphotransfer protein 10 [Populus x canadensis]

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 119/145 (82%), Gaps = 2/145 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+  QLQHQV   RRSLFDQGYLD +Q IQ+E LQD+ANPNFVEEVV LFYSDS RLIQN
Sbjct: 1   MDRKQLQHQVASTRRSLFDQGYLD-DQFIQIEHLQDEANPNFVEEVVRLFYSDSVRLIQN 59

Query: 61  IEQTLSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQL 119
           IEQ + N+  +DF +LDD +HQFKGS SSIGAKKV   CS+FREYC AGN EGC ++FQL
Sbjct: 60  IEQAMINKSNIDFGKLDDYMHQFKGSSSSIGAKKVMKECSKFREYCYAGNIEGCIKTFQL 119

Query: 120 IKQEYETLRRRLESYFQMVKQAKAA 144
           +KQE+ TLRR+LE+YFQ+VKQA  A
Sbjct: 120 LKQEHATLRRKLETYFQLVKQAGLA 144

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461335|ref|XP_004148397.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 120/141 (85%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+SN L  QV Y +R LF+QGYLD +Q  QLE+LQDD NPNF EE+VSLFY+DSARLI++
Sbjct: 1   MDSNLLHRQVAYTKRCLFEQGYLDRDQFTQLEELQDDTNPNFAEEIVSLFYNDSARLIRS 60

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           IEQT++++P DF +LD+ +HQFKGS SSIGA +V DACSQFREYC AGN EGC+RSFQ +
Sbjct: 61  IEQTMASKPTDFEKLDNDMHQFKGSSSSIGANRVTDACSQFREYCLAGNLEGCTRSFQQV 120

Query: 121 KQEYETLRRRLESYFQMVKQA 141
           KQE+E L+++L++YFQ+V+QA
Sbjct: 121 KQEHEILKKKLDTYFQLVRQA 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|391349165|emb|CCI55474.1| histidine phosphotransfer protein [Populus x canadensis]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 115/144 (79%), Gaps = 1/144 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M  NQL+ QV   R+SLFDQG+LD EQ IQLE+LQDDANPNFVEEVVSL Y DSARLI N
Sbjct: 1   MERNQLRRQVALTRQSLFDQGFLD-EQFIQLEELQDDANPNFVEEVVSLHYRDSARLISN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           IE+ L   P+DF++LD  +HQFKGS SSIGAKKVK  C+ FREYC AGN EGC R+FQ I
Sbjct: 60  IEKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEGCMRTFQQI 119

Query: 121 KQEYETLRRRLESYFQMVKQAKAA 144
           K+EY TL+R+LE+YFQ+ +QA  A
Sbjct: 120 KKEYATLKRKLETYFQLARQAGPA 143

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054404|ref|XP_002298243.1| histidine phosphotransfer protein [Populus trichocarpa] gi|222845501|gb|EEE83048.1| histidine phosphotransfer protein [Populus trichocarpa]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 115/144 (79%), Gaps = 1/144 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M  NQL+ QV   R+SLFDQG+LD EQ IQLE+LQDDANPNFVEEVVSL Y DSARLI N
Sbjct: 1   MERNQLRRQVALTRQSLFDQGFLD-EQFIQLEELQDDANPNFVEEVVSLHYRDSARLISN 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           IE+ L   P+DF++LD  +HQFKGS SSIGAKKVK  C+ FREYC AGN EGC R+FQ I
Sbjct: 60  IEKALEKNPLDFNKLDGYMHQFKGSSSSIGAKKVKAECTLFREYCKAGNGEGCMRTFQQI 119

Query: 121 KQEYETLRRRLESYFQMVKQAKAA 144
           K+EY TL+R+LE+YFQ+ +QA  A
Sbjct: 120 KKEYATLKRKLETYFQLARQAGPA 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298103710|emb|CBM42556.1| putative histidine phosphotransfer protein 8 [Populus x canadensis]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 116/138 (84%), Gaps = 2/138 (1%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+  QLQHQV YMR+SLFDQGYLD +Q  QLEDLQD+ANPNFVEEVV+LFYSDSAR IQN
Sbjct: 1   MDRKQLQHQVAYMRKSLFDQGYLD-DQFNQLEDLQDEANPNFVEEVVTLFYSDSARFIQN 59

Query: 61  IEQTLSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQL 119
           IEQ +  +P +DF +LDD +HQFKGS SS GAKK+K  CSQFRE C+AGN EGC ++FQ 
Sbjct: 60  IEQAMIKKPNIDFGKLDDYMHQFKGSSSSFGAKKMKKECSQFRECCSAGNIEGCIKTFQQ 119

Query: 120 IKQEYETLRRRLESYFQM 137
           +KQE+ TLRR+LE+YFQ+
Sbjct: 120 VKQEHATLRRKLETYFQV 137

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515458|ref|XP_004164766.1| PREDICTED: histidine-containing phosphotransfer protein 4-like [Cucumis sativus]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 116/137 (84%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M+SN L  QV Y +R LF+QGYLD +Q  QLE+LQDD NPNF EE+VSLFY+DSARLI++
Sbjct: 1   MDSNLLHRQVAYTKRCLFEQGYLDRDQFTQLEELQDDTNPNFAEEIVSLFYNDSARLIRS 60

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           IEQT++++P DF +LD+ +HQFKGS SSIGA +V DACSQFREYC AGN EGC+RSFQ +
Sbjct: 61  IEQTMASKPTDFEKLDNDMHQFKGSSSSIGANRVTDACSQFREYCLAGNLEGCTRSFQQV 120

Query: 121 KQEYETLRRRLESYFQM 137
           KQE+E L+++L++YFQ+
Sbjct: 121 KQEHEILKKKLDTYFQV 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2089900	154	AHP1 "histidine-containing pho	0.993	0.928	0.444	2.7e-29
TAIR|locus:2093817	156	AHP2 "histidine-containing pho	0.937	0.865	0.459	2.8e-27
TAIR|locus:2020868	157	AHP5 "histidine-containing pho	0.930	0.853	0.449	3.2e-26
TAIR|locus:2175643	155	AHP3 "histidine-containing pho	0.937	0.870	0.423	7.6e-25
TAIR|locus:2016339	154	HP6 "histidine phosphotransfer	0.944	0.883	0.362	4.3e-22
TAIR|locus:504955364	167	AT4G04402 "AT4G04402" [Arabido	0.798	0.688	0.318	1.6e-08
TAIR|locus:2183184	114	AT5G19710 "AT5G19710" [Arabido	0.368	0.464	0.396	3e-08
UNIPROTKB|G4MTL0	135	MGG_07173 "Uncharacterized pro	0.736	0.785	0.254	2.9e-07
ASPGD|ASPL0000046660	172	ypdA [Emericella nidulans (tax	0.652	0.546	0.295	6.1e-07
UNIPROTKB|Q884X1	118	PSPTO_1965 "Hpt domain protein	0.715	0.872	0.252	4.3e-06

TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 64/144 (44%), Positives = 97/144 (67%)

Query:     1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
             M+  Q Q  +    +SLF +G LDS Q +QL+ LQD++NP+FV +VV+LF+ DS R++ +
Sbjct:     1 MDLVQKQKSLQDYTKSLFLEGILDS-QFLQLQQLQDESNPDFVSQVVTLFFQDSDRILND 59

Query:    61 IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
             +  +L  + VDF ++D  +HQ KGS SSIGA++VK+AC  FR +C   N E C R  Q +
Sbjct:    60 LSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQV 119

Query:   121 KQEYETLRRRLESYFQMVKQAKAA 144
             KQEY  ++ RLE+ F++ +Q  A+
Sbjct:   120 KQEYYLVKNRLETLFKLEQQIVAS 143

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0009553 "embryo sac development" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0051301 "cell division" evidence=IGI

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 63/137 (45%), Positives = 87/137 (63%)

Query:     5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
             QLQ Q      SL+ QG+LD +Q  +L+ LQDD +P+FV EV+SLF+ D  +LI N+ + 
Sbjct:     7 QLQRQFRDYTISLYQQGFLD-DQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65

Query:    65 LSNR-PVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQE 123
             L     VDFS++   +HQ KGS SS+GAK+VK  C  F+E C A N EGC R  Q +  E
Sbjct:    66 LDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIE 125

Query:   124 YETLRRRLESYFQMVKQ 140
             Y+ L+ +L+  F + KQ
Sbjct:   126 YKALKTKLQDMFNLEKQ 142

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 62/138 (44%), Positives = 88/138 (63%)

Query:     5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
             QLQ Q      SL+ QG+LD+ Q  +L  LQD+  P+FV EVVSLF+ D ++LI  +  +
Sbjct:     8 QLQRQFQDYIVSLYQQGFLDN-QFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSIS 66

Query:    65 LSNRP--VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQ 122
             L  RP  VDF ++D  +HQ KGS SS+GA++VK+ C  F+E C+  N EGC R  Q +  
Sbjct:    67 LE-RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDY 125

Query:   123 EYETLRRRLESYFQMVKQ 140
             EY+ L+ +L+  F + KQ
Sbjct:   126 EYKMLKTKLQDLFNLEKQ 143

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;TAS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 58/137 (42%), Positives = 86/137 (62%)

Query:     5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQT 64
             QLQ +      SL+ QG+LD +Q  +L+ LQD+ +P+FV EVV+LF+ D  +LI N+ + 
Sbjct:     7 QLQRRFCDFTISLYHQGFLD-DQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARA 65

Query:    65 LSNRP-VDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQE 123
             L     VDF  +   +HQ KGS SS+GAK+VK  C   +E C++ N EGC R  Q +  E
Sbjct:    66 LDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIE 125

Query:   124 YETLRRRLESYFQMVKQ 140
             Y+TL+ +L+  F + +Q
Sbjct:   126 YKTLKAKLQDLFNLEQQ 142

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP

GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 50/138 (36%), Positives = 86/138 (62%)

Query:     4 NQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQ 63
             ++LQ  +  +  SLF QG LD EQ +QL+ LQD+ +PNFV +V+++++ +S +L++N+  
Sbjct:     7 DRLQADINRLLASLFHQGVLD-EQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65

Query:    64 TLSNRPV-DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQ 122
              L +R   D+ ++   L+Q  GS SSIGA++V++ C  FR      N  GC R  ++++ 
Sbjct:    66 LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEH 125

Query:   123 EYETLRRRLESYFQMVKQ 140
             EY  L+  +   FQ+ +Q
Sbjct:   126 EYHYLKNMMHELFQLEQQ 143

GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 43/135 (31%), Positives = 71/135 (52%)

Query:    21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTL--SNRPVDFSRL--- 75
             G+LD +Q  +L+ LQDD +P+FV EV+SLF+ D  +LI N+ + L  S   VDF ++   
Sbjct:    24 GFLD-DQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQMKLF 82

Query:    76 ------DDILHQFKGS--C--SSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYE 125
                   D +L + +GS  C  +S    K++    +  ++    +   C    Q +  EY+
Sbjct:    83 SCTLVFDTVLVR-RGSKLCVLASRNIAKLRITKGKLVQHRLRTHRLRC---LQQVDIEYK 138

Query:   126 TLRRRLESYFQMVKQ 140
             TL  +L+  F + KQ
Sbjct:   139 TLTTKLQDMFNLEKQ 153

GO:0005575 "cellular_component" evidence=ND

GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS

TAIR|locus:2183184 AT5G19710 "AT5G19710" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query:    89 IGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQA 141
             IGA KV     +   +  AGN EG   +   IK+E+  LR + E+YFQ+++QA
Sbjct:    52 IGAIKVVKELKKANTFLKAGNIEGVKGALPDIKKEHSELRAKFETYFQLMRQA 104

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MTL0 MGG_07173 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/122 (25%), Positives = 63/122 (51%)

Query:    26 EQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGS 85
             EQ++++++  D+A  +F + +V  F+  +    + +++ L +R  D   L  + H  KGS
Sbjct:    14 EQILEMDE--DEAERDFSKPLVMGFFEQAEETFEKMDKALKDR--DLKELSSLGHFLKGS 69

Query:    86 CSSIGAKKVKDACSQFREYCNAGNAEG--------CSRSFQ--LI--KQEYETLRRRLES 133
              +++G  KVKD+C   ++Y N    +G        C       L+  K++ E+L++ L  
Sbjct:    70 SATLGFTKVKDSCQVIQQYGNKLKLDGTEEPSEDVCYEKIDKALVDAKKDMESLKKLLNE 129

Query:   134 YF 135
             +F
Sbjct:   130 FF 131

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000046660 ypdA [Emericella nidulans (taxid:162425)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 29/98 (29%), Positives = 49/98 (50%)

Query:    15 RSLFDQG-YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFS 73
             R+L D    +D     Q+ ++ D+    F + +V  F+  +      +E+ L ++ +  S
Sbjct:    21 RTLADMADSIDQATFEQILEMDDEDEHEFSQGIVYGFFDQAESTFDKMEKALEDKKL--S 78

Query:    74 RLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAE 111
              L  + H  KGS ++IG  KVKDAC + + Y  AG  E
Sbjct:    79 ELSSLGHFLKGSSATIGLTKVKDACEKIQHY-GAGKDE 115

GO:0009927 "histidine phosphotransfer kinase activity" evidence=IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IGI

GO:0007234 "osmosensory signaling via phosphorelay pathway" evidence=IGI

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q884X1 PSPTO_1965 "Hpt domain protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 27/107 (25%), Positives = 47/107 (43%)

Query:    22 YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ 81
             +LD   L  L+++ +D  P  ++    +F  DS + +  +   +    +D   L    H 
Sbjct:     4 HLDYSVLSALQEVMEDEYPTLLD----VFLKDSEQRLAQLRLAVETGNLDLQELSLTAHS 59

Query:    82 FKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLR 128
             FKGS S++GA ++   C Q  E     ++         I  EY T+R
Sbjct:    60 FKGSSSNMGALQLSQLCHQLEERARQNDSSDLRDLIGRIGSEYLTVR 106


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       144   0.00091  102 3  11 22  0.43    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  126 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.00u 0.11s 17.11t   Elapsed:  00:00:01
  Total cpu time:  17.00u 0.11s 17.11t   Elapsed:  00:00:01
  Start:  Fri May 10 23:08:15 2013   End:  Fri May 10 23:08:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
pfam01627	87	pfam01627, Hpt, Hpt domain	5e-11
cd00088	94	cd00088, HPT, Histidine Phosphotransfer domain, in	1e-08
TIGR02956	968	TIGR02956, TMAO_torS, TMAO reductase sytem sensor	1e-06
COG2198	122	COG2198, ArcB, FOG: HPt domain [Signal transductio	3e-04

>gnl|CDD|216615 pfam01627, Hpt, Hpt domain

 Score = 55.1 bits (133), Expect = 5e-11
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 45  EVVSLFYSDSARLIQNIEQTL-SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFRE 103
           E++ LF  ++  L++ +EQ L +    D   L    H  KGS  S+G   + +   +  +
Sbjct: 1   ELLELFLEEAPELLEQLEQALLALEAEDLEALFRAAHTLKGSAGSLGLPALAELAHELED 60

Query: 104 YCNAGNAEGCS-RSFQLIKQEYETLRR 129
              AG       ++   +K E E LR 
Sbjct: 61  LLRAGRDGELLLQALDELKDELEALRA 87

The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072). Length = 87

>gnl|CDD|238041 cd00088, HPT, Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 43  VEEVVSLFYSDSARLIQNIEQTL--SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQ 100
           +EE++ LF  ++  L++ +E+ L       D + +    H  KGS +S+G +++     Q
Sbjct: 1   MEELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQ 60

Query: 101 FREYCNAGNA--EGCSRSFQLIKQEYETLRRRLE 132
             +  +A     E       L+    + L+  LE
Sbjct: 61  LEDLLDALRDGLEVTPELIDLLLDALDALKAELE 94

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are involved in important processes such as osmoregulation, cell growth, and differentiation; to date two-component proteins have not been identified in animals; in most prokaryotic systems, the output response is effected directly by the RR, which functions as a transcription factor while in eukaryotic systems, two-component proteins are found at the beginning of signaling pathways where they interface with more conventional eukaryotic signaling strategies such as MAP kinase and cyclic nucleotide cascades. Length = 94

>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 20  QGYLDSEQLIQLEDLQDDAN---PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLD 76
           +    SE L+  E LQ D        V ++V+LF + SA  ++ +    +    D +++ 
Sbjct: 855 ESNQASEFLLDEEQLQQDIEVLGVEKVRQLVALFKTSSAEQLEELSAARAVD--DDAQIK 912

Query: 77  DILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134
            + H+ KGS  S+G  ++   C Q  +    G  E        IKQ ++  +  L+ +
Sbjct: 913 KLAHKLKGSAGSLGLTQLTQLCQQLEKQGKTGALELS--DIDEIKQAWQASKTALDQW 968

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968

>gnl|CDD|225108 COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 32  EDLQDDAN-PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIG 90
             ++     P+ + E++++F  ++   ++ +E  L+    D   L  + H+ KGS +S+G
Sbjct: 13  LLVRLIGGDPDLLRELLAMFLEEAPAQLEQLESALAAE--DNDGLARLAHRLKGSAASLG 70

Query: 91  AKKVKDACSQF 101
              +   C Q 
Sbjct: 71  LPALAQLCQQL 81

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
KOG4747	150	consensus Two-component phosphorelay intermediate	99.77
COG2198	122	ArcB FOG: HPt domain [Signal transduction mechanis	99.7
PF01627	90	Hpt: Hpt domain; InterPro: IPR008207 Two-component	99.64
smart00073	87	HPT Histidine Phosphotransfer domain. Contains an	99.48
cd00088	94	HPT Histidine Phosphotransfer domain, involved in	99.38
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	99.38
PRK11091	779	aerobic respiration control sensor protein ArcB; P	99.17
PRK10618	894	phosphotransfer intermediate protein in two-compon	99.12
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	98.8
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	98.74
COG0643	716	CheA Chemotaxis protein histidine kinase and relat	98.35
PRK10547	670	chemotaxis protein CheA; Provisional	98.16
PRK09959	1197	hybrid sensory histidine kinase in two-component r	97.81
PRK15347	921	two component system sensor kinase SsrA; Provision	96.86

>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms]

Probab=99.77  E-value=7.2e-18  Score=117.25  Aligned_cols=135  Identities=52%  Similarity=0.876  Sum_probs=129.2

Q ss_pred             HHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhh
Q 032249            5 QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKG   84 (144)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG   84 (144)
                      +++..+-.+..|.++++++| ++|.+|.++.++..|+|+.+++..|+++..+.+..++.++.. ..|+..+....|.+||
T Consensus         7 ~~q~~~~d~~~sl~~qgild-~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~-~~d~k~~~~~~hqlkg   84 (150)
T KOG4747|consen    7 SMQRDVSDYTKSLFDQGILD-SQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDC-ERDFKKLGSHVHQLKG   84 (150)
T ss_pred             HHHHHHHHHHHHHHHHHhhH-HHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHccC
Confidence            67888899999999999999 999999999999999999999999999999999999999985 3599999999999999


Q ss_pred             hhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 032249           85 SCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQA  141 (144)
Q Consensus        85 ss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~  141 (144)
                      ++..+||.+....|..+...|..++.+.+...+++++-++..++..|+.+++.++|.
T Consensus        85 ssssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~rq~  141 (150)
T KOG4747|consen   85 SSSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLERQE  141 (150)
T ss_pred             chhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999884

>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms]

Probab=99.70  E-value=8.5e-16  Score=105.51  Aligned_cols=111  Identities=22%  Similarity=0.426  Sum_probs=93.7

Q ss_pred             CCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHH
Q 032249           22 YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQF  101 (144)
Q Consensus        22 ~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~l  101 (144)
                      .++...+..+..+.+ ++++++.+++..|+++.+..+..+..++.  ++|+..+.+.+|+|||+|+++|+.+|..+|.+|
T Consensus         5 ~~~~~~~~~~~~~~g-~~~~~~~~ll~~f~~~~~~~l~~l~~~l~--~~d~~~~~~~aH~lkg~a~~lg~~~L~~~~~~l   81 (122)
T COG2198           5 PLSTSDIELLVRLIG-GDPDLLRELLAMFLEEAPAQLEQLESALA--AEDNDGLARLAHRLKGSAASLGLPALAQLCQQL   81 (122)
T ss_pred             ccccccHHHHHHHcC-CChHHHHHHHHHHHHHhHHHHHHHHHHHh--cCCcHHHHHHHHHHHhHHHhccHHHHHHHHHHH
Confidence            334444455555554 78999999999999999999999999996  579999999999999999999999999999999


Q ss_pred             HHHHHc-CChhhHHHHHHHHHHH--HHHHHHHHHHHH
Q 032249          102 REYCNA-GNAEGCSRSFQLIKQE--YETLRRRLESYF  135 (144)
Q Consensus       102 E~~~~~-~~~~~~~~~~~~l~~~--~~~~~~~L~~~l  135 (144)
                      |..++. ...+.+..++..+..+  +..+...+..+.
T Consensus        82 E~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~  118 (122)
T COG2198          82 EDALRSGASLEELEELIAELKDELQLDVLALELLTYL  118 (122)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence            999998 5577889999999998  666666665554

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=99.64  E-value=3.7e-15  Score=95.98  Aligned_cols=83  Identities=22%  Similarity=0.466  Sum_probs=69.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHh---hCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhh---HHHHHH
Q 032249           45 EVVSLFYSDSARLIQNIEQTL---SNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEG---CSRSFQ  118 (144)
Q Consensus        45 ~ll~~Fl~~~~~~l~~L~~a~---~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~---~~~~~~  118 (144)
                      +++..|+++.+..+..|+.++   .  .+|++.+++.+|+|||+++++|+.++..+|..+|..++.++...   +...+.
T Consensus         1 ell~~f~~~~~~~~~~l~~~~~~~~--~~d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~   78 (90)
T PF01627_consen    1 ELLDIFLEEAPEDLEQLEQALQALE--QEDWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDKPEAEELEQLLD   78 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSH--HCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHHHHSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh--HhhHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence            478999999999999999999   5  36999999999999999999999999999999999999887665   444444


Q ss_pred             HHHHHHHHHHH
Q 032249          119 LIKQEYETLRR  129 (144)
Q Consensus       119 ~l~~~~~~~~~  129 (144)
                      .+...+.++.+
T Consensus        79 ~l~~~l~~l~~   89 (90)
T PF01627_consen   79 ELEAMLEQLRQ   89 (90)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            44444444433

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....

>smart00073 HPT Histidine Phosphotransfer domain

Probab=99.48  E-value=9.4e-14  Score=89.40  Aligned_cols=84  Identities=19%  Similarity=0.264  Sum_probs=69.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 032249           45 EVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEY  124 (144)
Q Consensus        45 ~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~  124 (144)
                      +++..|+++.+..+..|..++.  .+|+..+.+.+|+|||+++++|+..|..+|..+|..++...... ....+.+...+
T Consensus         2 e~~~~f~~~~~~~l~~l~~~~~--~~~~~~l~~~~H~LKG~a~~~g~~~l~~~~~~lE~~~~~~~~~~-~~~~~~l~~~~   78 (87)
T smart00073        2 EELAEFLQSLEEGLLELEKALD--AQDVNEIFRAAHTLKGSAGSLGLQQLAQLCHQLENLLDAARSGE-VELTPDLLDLL   78 (87)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcC--HhHHHHHHHHHHhhhhhHHhcCHHHHHHHHHHHHHHHHHHHcCC-CCCCHHHHHHH
Confidence            5789999999999999999885  57999999999999999999999999999999999888643322 24456666666


Q ss_pred             HHHHHHH
Q 032249          125 ETLRRRL  131 (144)
Q Consensus       125 ~~~~~~L  131 (144)
                      ..+...|
T Consensus        79 ~~~~~~l   85 (87)
T smart00073       79 LELVDVL   85 (87)
T ss_pred             HHHHHHH
Confidence            6665554

Contains an active histidine residue that mediates phosphotransfer reactions. Domain detected only in eubacteria. This alignment is an extension to that shown in the Cell structure paper.

>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E

Probab=99.38  E-value=2.3e-12  Score=84.32  Aligned_cols=86  Identities=22%  Similarity=0.422  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhC--CCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCCh--hhHHHHHHH
Q 032249           44 EEVVSLFYSDSARLIQNIEQTLSN--RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNA--EGCSRSFQL  119 (144)
Q Consensus        44 ~~ll~~Fl~~~~~~l~~L~~a~~~--~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~--~~~~~~~~~  119 (144)
                      .+++..|+++.+..+..|...+..  ..+|+..+...+|+|||+++++|+..|..+|..+|..++.+..  +........
T Consensus         2 ~~l~~~f~~~~~~~l~~l~~~~~~~~~~~d~~~l~~~~H~LkGsa~~~G~~~l~~~~~~lE~~~~~~~~~~~~~~~~~~~   81 (94)
T cd00088           2 EELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQLEDLLDALRDGLEVTPELIDL   81 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhHHhcCChHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            467999999999999999999951  0369999999999999999999999999999999999987432  222333444


Q ss_pred             HHHHHHHHHH
Q 032249          120 IKQEYETLRR  129 (144)
Q Consensus       120 l~~~~~~~~~  129 (144)
                      +...+..+..
T Consensus        82 ~~~~~d~l~~   91 (94)
T cd00088          82 LLDALDALKA   91 (94)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=99.38  E-value=7.1e-12  Score=110.36  Aligned_cols=106  Identities=25%  Similarity=0.425  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHH
Q 032249           22 YLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQF  101 (144)
Q Consensus        22 ~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~l  101 (144)
                      ++|...+......   .+++.+.+++..|+++.+..+..|..++.  .+|+..++..+|+|||+++++|+.+|..+|..|
T Consensus       863 ll~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~l~~~~~--~~d~~~~~~~~H~lkg~~~~~g~~~l~~~~~~l  937 (968)
T TIGR02956       863 LLDEEQLQQDIEV---LGVEKVRQLVALFKTSSAEQLEELSAARA--VDDDAQIKKLAHKLKGSAGSLGLTQLTQLCQQL  937 (968)
T ss_pred             hcCHHHHHHHHHh---cCcHHHHHHHHHHHHhhHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            6777776655444   46778999999999999999999999996  479999999999999999999999999999999


Q ss_pred             HHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 032249          102 REYCNAGNAEGCSRSFQLIKQEYETLRRRLESY  134 (144)
Q Consensus       102 E~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~  134 (144)
                      |..++.+++.  ...+..++..|.++..+|++|
T Consensus       938 e~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~  968 (968)
T TIGR02956       938 EKQGKTGALE--LSDIDEIKQAWQASKTALDQW  968 (968)
T ss_pred             HHhcccCCcc--hhHHHHHHHHHHHHHHHHHhC
Confidence            9999988773  467899999999999998875

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional

Probab=99.17  E-value=1.5e-09  Score=94.14  Aligned_cols=113  Identities=16%  Similarity=0.261  Sum_probs=100.1

Q ss_pred             CCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 032249           21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQ  100 (144)
Q Consensus        21 ~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~  100 (144)
                      ..+|.+.+..+.+..   +...+...+..|.+..+..+..+..++.  .+|+..+...+|+|||+++++|+..|..+|..
T Consensus       664 ~~l~~~~l~~~~~~~---g~~~~~~~l~~~~~~~~~~~~~l~~~l~--~~d~~~~~~~ah~l~g~~~~~g~~~l~~~~~~  738 (779)
T PRK11091        664 ALLDIPMLEQYVELV---GPKLITDSLAVFEKMMPGYLSVLDSNLT--ARDQKGIVEEAHKIKGAAGSVGLRHLQQLAQQ  738 (779)
T ss_pred             cccCHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            467777777766653   4567788899999999999999999996  57999999999999999999999999999999


Q ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032249          101 FREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMV  138 (144)
Q Consensus       101 lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~  138 (144)
                      +|.....+.++.+..++.++..+|....+.++.|+...
T Consensus       739 le~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  776 (779)
T PRK11091        739 IQSPDLPAWWDNVQDWVEELKNEWRHDVEVLKAWLAQA  776 (779)
T ss_pred             HhCcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99988888888889999999999999999999998653

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional

Probab=99.12  E-value=4.9e-10  Score=98.91  Aligned_cols=82  Identities=16%  Similarity=0.256  Sum_probs=74.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q 032249           45 EVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEY  124 (144)
Q Consensus        45 ~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~  124 (144)
                      .++..|+++.+.++..|..++.  .+|+..+++.+|+|||+++++|+..+..+|..||+.++.++...+...+.+|...+
T Consensus       811 ~~~~lF~~t~~~di~~L~~~~~--~~D~~~l~~~aHrLKG~~aml~l~~l~~~~~~LE~~i~~~~~~~i~~~i~~id~~v  888 (894)
T PRK10618        811 DYYALFVDTVPDDVKRLYTEAA--TSDFASLAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDEPGIENYISDIDSFV  888 (894)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence            3568999999999999999996  48999999999999999999999999999999999999999988888888887776


Q ss_pred             HHHH
Q 032249          125 ETLR  128 (144)
Q Consensus       125 ~~~~  128 (144)
                      .++.
T Consensus       889 ~~ll  892 (894)
T PRK10618        889 KSLL  892 (894)
T ss_pred             HHHh
Confidence            6553

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=98.80  E-value=1.7e-07  Score=82.50  Aligned_cols=99  Identities=23%  Similarity=0.335  Sum_probs=73.9

Q ss_pred             hhHHHHHHHHhHhccC-CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 032249            3 SNQLQHQVLYMRRSLF-DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ   81 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~-~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   81 (144)
                      .+.|...+..+..... ..+.++...+......   .++..+.+++..|..+....+..++.+..  .+|+..++.++|+
T Consensus       787 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~ah~  861 (914)
T PRK11466        787 REVLGQLLAHYLQLQVNNDQPLDVSQLNEDAAL---MGTEKIHEWLALFKQHALPLLDEIDIARA--SQDSEKIKRAAHQ  861 (914)
T ss_pred             HHHHHHHHHHHhhhccccccCCCHHHHHHHHHh---cCHHHHHHHHHHHHHhhHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence            3455555544443221 2234555554443322   34566788999999999999999999886  4799999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHHHH
Q 032249           82 FKGSCSSIGAKKVKDACSQFREYCN  106 (144)
Q Consensus        82 LKGss~~lGa~~L~~~~~~lE~~~~  106 (144)
                      |||+++++|+..+..+|.++|+.+.
T Consensus       862 lkg~~~~lg~~~l~~~~~~le~~~~  886 (914)
T PRK11466        862 LKSSCSSLGMRQASQACAQLEQQPL  886 (914)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999998754

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=98.74  E-value=8.2e-07  Score=78.04  Aligned_cols=97  Identities=20%  Similarity=0.402  Sum_probs=83.9

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCC-hhhHHHH
Q 032249           38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN-AEGCSRS  116 (144)
Q Consensus        38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~-~~~~~~~  116 (144)
                      ++++...+++..|.+..+..+..+..++.  ..|+..+...+|++||+++++|+.++..+|..+|..++.+. ...+...
T Consensus       821 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~h~l~g~~~~~g~~~l~~~~~~le~~~~~~~~~~~~~~~  898 (919)
T PRK11107        821 GKPDLARDMLQMLLDFLPEVRNKVEEALA--GEDPEGLLDLIHKLHGSCSYSGVPRLKKLCQLIEQQLRSGTSVEDLEPE  898 (919)
T ss_pred             CCHHHHHHHHHHHHHhHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCChhhHHHH
Confidence            56788899999999999999999999996  47999999999999999999999999999999999998764 4566677


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032249          117 FQLIKQEYETLRRRLESYFQ  136 (144)
Q Consensus       117 ~~~l~~~~~~~~~~L~~~l~  136 (144)
                      +..+..++.++...+++|++
T Consensus       899 ~~~~~~~~~~~~~~~~~~~~  918 (919)
T PRK11107        899 LLELLDEMENVARAAKKVLS  918 (919)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            77777777777777777753

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.35  E-value=5.9e-06  Score=71.66  Aligned_cols=93  Identities=22%  Similarity=0.380  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhCC---CCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChh
Q 032249           41 NFVEEVVSLFYSDSARLIQNIEQTLSNR---PVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAE  111 (144)
Q Consensus        41 ~~~~~ll~~Fl~~~~~~l~~L~~a~~~~---~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~  111 (144)
                      ....+++..|+.+.++.++.|+..+-.-   ..|   ...+.+.+|+|||+||++|+..+..+|..+|...   +.+...
T Consensus         4 ~~~~~~~~~F~~Ea~e~l~~l~~~Ll~LE~~~~d~~~ln~ifRaaHTlKG~a~~~g~~~l~~l~H~~E~~ld~~r~g~~~   83 (716)
T COG0643           4 MDMEEILEDFLEEAEELLQALEQALLALEPDPEDLDLLNAIFRAAHTLKGGAGTLGLTTLAELAHAMEDLLDALRNGELE   83 (716)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHhHhhccCCCCCHHHHHHHHHHHHhhhhhhhhcChhHHHHHHHHHHHHHHHHhcCCcc
Confidence            4467789999999999999999755221   123   4679999999999999999999999999999854   556554


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 032249          112 GCSRSFQLIKQEYETLRRRLES  133 (144)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~L~~  133 (144)
                      --..++..+..+...+...+..
T Consensus        84 ~~~~l~d~~l~~~D~l~~~~~~  105 (716)
T COG0643          84 LTSELLDLLLEALDALEEMLDA  105 (716)
T ss_pred             CcHHHHHHHhhhhHHHHHHHHh
Confidence            4456666666666666665555

>PRK10547 chemotaxis protein CheA; Provisional

Probab=98.16  E-value=2.5e-05  Score=67.44  Aligned_cols=86  Identities=14%  Similarity=0.310  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhC---CCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH---cCChhhHH
Q 032249           44 EEVVSLFYSDSARLIQNIEQTLSN---RPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN---AGNAEGCS  114 (144)
Q Consensus        44 ~~ll~~Fl~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~---~~~~~~~~  114 (144)
                      .+++..|++++.+.++.|+..+-.   ...|   ...+.+.+|+|||+|+++|+..+..+|..+|....   .+...--.
T Consensus         4 ~~~l~~F~~Ea~E~l~~le~~Ll~LE~~p~d~e~in~lFRa~HTiKG~a~~~g~~~i~~l~H~~E~lld~vR~g~l~~~~   83 (670)
T PRK10547          4 SDFYQTFFDEADELLADMEQHLLVLDPEAPDAEQLNAIFRAAHSIKGGAGTFGFTVLQETTHLMENLLDEARRGEMQLNT   83 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhhHHhhcCchHHHHHHHHHHHHHHHHHCCCCCCCH
Confidence            467899999999999888886622   1123   46789999999999999999999999999998664   45433223


Q ss_pred             HHHHHHHHHHHHHHH
Q 032249          115 RSFQLIKQEYETLRR  129 (144)
Q Consensus       115 ~~~~~l~~~~~~~~~  129 (144)
                      ..+.-+...+..+..
T Consensus        84 ~~~dlll~~~D~l~~   98 (670)
T PRK10547         84 DIINLFLETKDIMQE   98 (670)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444443333

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=97.81  E-value=0.0011  Score=60.51  Aligned_cols=96  Identities=10%  Similarity=0.219  Sum_probs=77.1

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCC-hhhHHHH
Q 032249           38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGN-AEGCSRS  116 (144)
Q Consensus        38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~-~~~~~~~  116 (144)
                      .+...+.+++..+......++..+..+..  .+|...+...+|+++|+++.+|+..|...|.++|......+ ...+...
T Consensus      1097 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~g~~~~l~~~~l~~~~~~~e~~~~~~~~~~~l~~~ 1174 (1197)
T PRK09959       1097 NDLQLMQEILMTFQHETHKDLPAAFHALE--AGDNRTFHQCIHRIHGAANILNLQKLINISHQLEITPVSDDSKPEILQL 1174 (1197)
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhhcCCchHHHHHH
Confidence            56677889999999999999988887775  47999999999999999999999999999999998887654 3455556


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 032249          117 FQLIKQEYETLRRRLESYF  135 (144)
Q Consensus       117 ~~~l~~~~~~~~~~L~~~l  135 (144)
                      +..+...+......+..|+
T Consensus      1175 ~~~~~~~~~~~~~~~~~~~ 1193 (1197)
T PRK09959       1175 LNSVKEHIAELDQEIAVFC 1193 (1197)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            6666666655555555554

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=96.86  E-value=0.0088  Score=52.92  Aligned_cols=76  Identities=21%  Similarity=0.334  Sum_probs=56.0

Q ss_pred             HHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q 032249           47 VSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYET  126 (144)
Q Consensus        47 l~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~  126 (144)
                      ...+.+.....+..+..+++.  .|  .+...+|++||+++.+|+..+...|.++|..++.+...... .+..++..+..
T Consensus       839 ~~~~~~~l~~~~~~~~~~~~~--~~--~l~~~~h~i~~~~~~~g~~~l~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~  913 (921)
T PRK15347        839 NSKLYQSLLLLLAQIEQAVEN--QE--VLSQLLHTLKGCAGQAGLTELQCAVIDLENALETGEILSLE-ELTDLRELIHA  913 (921)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC--HH--HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHH
Confidence            445555666777888888852  34  89999999999999999999999999999999876654322 24444444443


Q ss_pred             H
Q 032249          127 L  127 (144)
Q Consensus       127 ~  127 (144)
                      +
T Consensus       914 ~  914 (921)
T PRK15347        914 L  914 (921)
T ss_pred             H
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
4euk_B	159	Crystal Structure Length = 159		1e-26
3us6_A	153	Crystal Structure Of Histidine-Containing Phosphotr		2e-25
1yvi_A	149	X-Ray Structure Of Putative Histidine-Containing Ph		4e-23
1wn0_A	145	Crystal Structure Of Histidine-containing Phosphotr		5e-22

>pdb|4EUK|B Chain B, Crystal Structure Length = 159

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 89/130 (68%), Gaps = 1/130 (0%)
Query: 15  RSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSR 74
           +SLF +G LDS+ L   +  QD++NP+FV +VV+LF+ DS R++ ++  +L  + VDF +
Sbjct: 20  KSLFLEGILDSQFLQLQQL-QDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKK 78
Query: 75  LDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134
           +D  +HQ KGS SSIGA++VK+AC  FR +C   N E C R  Q +KQEY  ++ RLE+ 
Sbjct: 79  VDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETL 138
Query: 135 FQMVKQAKAA 144
           F++ +Q  A+
Sbjct: 139 FKLEQQIVAS 148

>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M   Q++ Q +   +S+F +G+LD + L   + LQD+ NP FV EVVSLF+ DS R++++
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQ-LQDENNPEFVFEVVSLFFDDSERILKD 59
Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           +   +  + +DF ++D  +HQFKGS +SIGA++VK++C  FR +C   N + C R  Q +
Sbjct: 60  LSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQV 119
Query: 121 KQEYETLRRRLESYFQMVKQAKAA 144
           KQEY  ++ +LE+  ++ +Q  AA
Sbjct: 120 KQEYLLVKNKLETLLRLEQQIVAA 143

>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149

Iteration: 1
 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 86/139 (61%), Gaps = 2/139 (1%)
Query: 6   LQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQNIEQT 64
           L+ Q+  +  S+F QG +D EQ  QL+ LQD+   P FV EVV+LF  D+ R+I  I   
Sbjct: 6   LRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 65  LSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEY 124
           L    V+F ++D  +HQ KGS +S+GA+KVK  C QFR++C   + +GC  +  +++ ++
Sbjct: 65  LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDF 124
Query: 125 ETLRRRLESYFQMVKQAKA 143
             LR + ++  Q+ +Q +A
Sbjct: 125 YDLRNKFQTMLQLEQQIQA 143

>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQ 59
           M +  L+ Q+  +  S+F  G +D EQ  QL+ LQ+D   P FV EVV+LF  D+ R+I 
Sbjct: 1   MAAAALREQLNALLSSMFASGLVD-EQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIIS 59
Query: 60  NIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQL 119
            +   L    VDF ++D  +HQ KGS +S+GA+KVK  C QFR+ C   N +GC  +  +
Sbjct: 60  ELAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAV 119
Query: 120 IKQEYETLRRRLESYF 135
           ++ E+  LR + ++  
Sbjct: 120 VRNEFYDLRNKFQTML 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
3us6_A	153	Histidine-containing phosphotransfer protein type	1e-46
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	3e-46
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	7e-21
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	1e-15
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	2e-11
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	8e-09
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	2e-07
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	4e-07

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153

 Score =  147 bits (372), Expect = 1e-46
 Identities = 59/144 (40%), Positives = 96/144 (66%), Gaps = 1/144 (0%)

Query: 1   MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQN 60
           M   Q++ Q +   +S+F +G+LD  Q +QL+ LQD+ NP FV EVVSLF+ DS R++++
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLD-GQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKD 59

Query: 61  IEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLI 120
           +   +  + +DF ++D  +HQFKGS +SIGA++VK++C  FR +C   N + C R  Q +
Sbjct: 60  LSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQV 119

Query: 121 KQEYETLRRRLESYFQMVKQAKAA 144
           KQEY  ++ +LE+  ++ +Q  AA
Sbjct: 120 KQEYLLVKNKLETLLRLEQQIVAA 143

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149

 Score =  146 bits (369), Expect = 3e-46
 Identities = 53/141 (37%), Positives = 86/141 (60%), Gaps = 2/141 (1%)

Query: 5   QLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQNIEQ 63
            L+ Q+  +  S+F QG +D EQ  QL+ LQD+   P FV EVV+LF  D+ R+I  I  
Sbjct: 5   ALRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIAT 63

Query: 64  TLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQE 123
            L    V+F ++D  +HQ KGS +S+GA+KVK  C QFR++C   + +GC  +  +++ +
Sbjct: 64  LLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRND 123

Query: 124 YETLRRRLESYFQMVKQAKAA 144
           +  LR + ++  Q+ +Q +A 
Sbjct: 124 FYDLRNKFQTMLQLEQQIQAY 144

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167

 Score = 82.1 bits (202), Expect = 7e-21
 Identities = 15/117 (12%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 16  SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRL 75
           S      ++   L ++  + DD + +F + ++  F   +      +++ L     + + L
Sbjct: 2   STIPSEIINWTILNEIISMDDD-DSDFSKGLIIQFIDQAQTTFAQMQRQLDG-EKNLTEL 59

Query: 76  DDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLE 132
           D++ H  KGS +++G +++   C + +           +++  +     +++   + 
Sbjct: 60  DNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGIN 116

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120

 Score = 67.6 bits (165), Expect = 1e-15
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 8   HQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSN 67
           H   +M   + +Q         ++E+L  +   + V  ++ +F  +    I  + +   +
Sbjct: 2   HHHHHMNTDVLNQQ--------KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGS 53

Query: 68  RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETL 127
                  L +I H  K S +S GA ++ +      +   A   +        +       
Sbjct: 54  E--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHIT 111

Query: 128 RRRLESYF 135
           R    S+ 
Sbjct: 112 RDAYRSWT 119

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125

 Score = 56.6 bits (136), Expect = 2e-11
 Identities = 16/105 (15%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 30  QLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSI 89
            LE   +   P  + + +++F       +  +E  L+ +  D   + +  H+ KG+  S+
Sbjct: 16  MLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSV 73

Query: 90  GAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134
           G + ++    Q +        +      + +K+E+      L+++
Sbjct: 74  GLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAW 118

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Length = 119

 Score = 49.7 bits (119), Expect = 8e-09
 Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 7/120 (5%)

Query: 18  FDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDD 77
           FD   L+ +  +     Q +   N   E++ +        ++ I+  L     D + +  
Sbjct: 1   FDLHTLNWDLCLT----QANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLS 54

Query: 78  ILHQFKGSCSSIGAKKVKDACSQFREYCNAG-NAEGCSRSFQLIKQEYETLRRRLESYFQ 136
            +H+  G+    G    +  C +           E        +  E   +   ++    
Sbjct: 55  TIHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli} Length = 123

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 39  NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98
             +   +++ +       +   +E+ L     +   L D++H+  GSC   G  ++K+ C
Sbjct: 27  KTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLC 84

Query: 99  SQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKA 143
               +   +G         + ++ E   L   +++  +   +   
Sbjct: 85  QLIEQQLRSG------TKEEDLEPELLELLDEMDNVAREASKILG 123

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6 Length = 113

 Score = 45.0 bits (106), Expect = 4e-07
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 39  NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC 98
           +   V+EV++LF   +A     ++              D +H  KG+   +GA  + + C
Sbjct: 23  DFAVVDEVLALFREQAALWAPMLDP-------THPGWKDAVHTVKGAARGVGAFNLGEVC 75

Query: 99  SQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQ 140
            +          E    S + ++   +     + +Y      
Sbjct: 76  ER---------CEAGQESLEGVRTALDAALLDIAAYAHEQAL 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3us6_A	153	Histidine-containing phosphotransfer protein type	100.0
1yvi_A	149	Histidine-containing phosphotransfer protein; stru	99.97
2r25_A	167	Phosphorelay intermediate protein YPD1; alpha5-BET	99.92
2a0b_A	125	HPT domain; sensory transduction, histidine kinase	99.87
3myf_A	119	Sensor protein; HPT, histidine kinase, PSI, MCSG,	99.86
3iqt_A	123	Signal transduction histidine-protein kinase BARA;	99.83
1y6d_A	120	Phosphorelay protein LUXU; phosphotransferase, fou	99.73
2ooc_A	113	Histidine phosphotransferase; NP_419930.1, hypothe	99.71
1sr2_A	116	Putative sensor-like histidine kinase YOJN; four-h	99.67
1tqg_A	105	Chemotaxis protein CHEA; histidine kinase, phospho	99.53
2ld6_A	139	Chemotaxis protein CHEA; TMP1, transferase; NMR {T	99.4
1i5n_A	146	Chemotaxis protein CHEA; four-helix bundle, transf	99.35
2lch_A	113	Protein OR38; structural genomics, northeast struc	99.35
3kyj_A	144	CHEA3, putative histidine protein kinase; protein-	99.1
2lp4_A	225	Chemotaxis protein CHEA; two component signaling s	98.84

>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}

Probab=100.00  E-value=4.2e-32  Score=192.66  Aligned_cols=143  Identities=41%  Similarity=0.786  Sum_probs=135.0

Q ss_pred             CChhHHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 032249            1 MNSNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH   80 (144)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH   80 (144)
                      |...+|+.++.+|+++++++++|| ++|++|+++.++++|+|+.+++..|++++++.+..|..+++.+..|+..+...+|
T Consensus         1 ~~~~~~~~~~~~~~~~l~~~g~LD-~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH   79 (153)
T 3us6_A            1 MEVGQMRRQWVDYIKSMFMEGFLD-GQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH   79 (153)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTSCC-HHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccccchH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence            667899999999999999999999 8899999999889999999999999999999999999999642229999999999


Q ss_pred             hhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhC
Q 032249           81 QFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKAA  144 (144)
Q Consensus        81 ~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~~  144 (144)
                      +|||||+++|+.+|+.+|..||.+++.++.+.+...+..|+.+|.+++.+|++|++.++|..++
T Consensus        80 ~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~  143 (153)
T 3us6_A           80 QFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAA  143 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999998764

>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A

Probab=99.97  E-value=3.2e-30  Score=182.24  Aligned_cols=141  Identities=36%  Similarity=0.698  Sum_probs=130.1

Q ss_pred             hhHHHHHHHHhHhccCCCCCCCHHHHHHHHccccCCC-hHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 032249            3 SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDAN-PNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ   81 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~~~~-~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   81 (144)
                      ..+|++++..|.++++++++||+. |++|+++.++++ ++|+.+++..|+++.+..+..|..+++.++.|+..+...+|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~-~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~   81 (149)
T 1yvi_A            3 AAALRDQLTALLSSMFSQGLVDEQ-FQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCHH-HHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccHH-HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            368999999999999999999998 999999977677 999999999999999999999999997422389999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhC
Q 032249           82 FKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKAA  144 (144)
Q Consensus        82 LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~~  144 (144)
                      |||||++||+.+|+.+|..||..++.++.+.+...+..++.+|.+++.+|+.|++.++|.+++
T Consensus        82 LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~  144 (149)
T 1yvi_A           82 LKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAY  144 (149)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999998763

>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A

Probab=99.92  E-value=2.3e-24  Score=153.67  Aligned_cols=120  Identities=16%  Similarity=0.349  Sum_probs=110.4

Q ss_pred             ccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHH
Q 032249           16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVK   95 (144)
Q Consensus        16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~   95 (144)
                      ++.++++||+.+|++|+++.+++ |+|+.++|..|++++++.+..|+.+++ +.+|+..+...+|+|||||++|||.++.
T Consensus         2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~rV~   79 (167)
T 2r25_A            2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQRIA   79 (167)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            46788999999999999998865 999999999999999999999999997 3589999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC------------hh--------------------------------hHHHHHHHHHHHHHHHHHHH
Q 032249           96 DACSQFREYCNAGN------------AE--------------------------------GCSRSFQLIKQEYETLRRRL  131 (144)
Q Consensus        96 ~~~~~lE~~~~~~~------------~~--------------------------------~~~~~~~~l~~~~~~~~~~L  131 (144)
                      .+|.+||..++.++            ..                                .+...+.+++.+|..++.+|
T Consensus        80 ~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~L  159 (167)
T 2r25_A           80 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL  159 (167)
T ss_dssp             HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988            32                                56788999999999999999


Q ss_pred             HHHHHh
Q 032249          132 ESYFQM  137 (144)
Q Consensus       132 ~~~l~~  137 (144)
                      +.|++.
T Consensus       160 ~~~~~~  165 (167)
T 2r25_A          160 SKYYNT  165 (167)
T ss_dssp             HHHTTS
T ss_pred             HHHHcc
Confidence            999753

>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A

Probab=99.87  E-value=3.2e-22  Score=137.03  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=107.5

Q ss_pred             ccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHH
Q 032249           16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVK   95 (144)
Q Consensus        16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~   95 (144)
                      ++.+.++||+.+|.+|.+.   .+++++.+++..|+++.+..+..|..++.  .+|+..+.+.+|+|||+|+++|+.+|+
T Consensus         5 ~~~~~~~lD~~~l~~l~~~---~g~~~~~~ll~~F~~e~~~~l~~L~~a~~--~~d~~~~~~~aH~LKGsa~~lG~~~l~   79 (125)
T 2a0b_A            5 NSKSEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLT--AQDKKGIVEEGHKIKGAAGSVGLRHLQ   79 (125)
T ss_dssp             -CHHHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4455689999999999987   46889999999999999999999999997  379999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032249           96 DACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMV  138 (144)
Q Consensus        96 ~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~  138 (144)
                      .+|..+|..++.++...+...+..|...|.++...|+.|+...
T Consensus        80 ~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~  122 (125)
T 2a0b_A           80 QLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKA  122 (125)
T ss_dssp             HHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999988888888899999999999999999998753

>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}

Probab=99.86  E-value=1.4e-20  Score=128.12  Aligned_cols=114  Identities=12%  Similarity=0.251  Sum_probs=102.0

Q ss_pred             CCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHH
Q 032249           18 FDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDA   97 (144)
Q Consensus        18 ~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~   97 (144)
                      +|.+++||+..-.   .. +|+++++.+|+..|+++.+.++..|+.++.  .+||..+.+.+|+|||+|+++|+.+|..+
T Consensus         1 ~~~~~~D~~~~l~---~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~--~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~   74 (119)
T 3myf_A            1 FDLHTLNWDLCLT---QA-NHKSNLALEMLKMLLDSLPETVEKIQTALG--QNDQATMLSTIHKLHGASCYCGVPTTQRL   74 (119)
T ss_dssp             -CTTTCCHHHHHH---HT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred             CCccccCHHHHHH---Hh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            4678999875443   33 389999999999999999999999999997  37999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032249           98 CSQFREYCNAGNA-EGCSRSFQLIKQEYETLRRRLESYFQM  137 (144)
Q Consensus        98 ~~~lE~~~~~~~~-~~~~~~~~~l~~~~~~~~~~L~~~l~~  137 (144)
                      |..||..++.+.. +.+...+..+..++..+..+++.|+..
T Consensus        75 ~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~  115 (119)
T 3myf_A           75 CQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ  115 (119)
T ss_dssp             HHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999874 678888999999999999999999874

>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}

Probab=99.83  E-value=5.7e-20  Score=125.76  Aligned_cols=111  Identities=15%  Similarity=0.328  Sum_probs=99.4

Q ss_pred             CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 032249           19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC   98 (144)
Q Consensus        19 ~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~   98 (144)
                      ..|++||+..-.+   . +|+++++.+|+..|+++.+.++..|+.++.  .+||..+.+.+|+|||+|+++|+.+|..+|
T Consensus        11 ~~~~~D~~~~l~~---a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~--~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~c   84 (123)
T 3iqt_A           11 PNATLDWQLALRQ---A-AGKTDLARDMLQMLLDFLPEVRNKVEEQLV--GENPEGLVDLIHKLHGSCGYSGVPRMKNLC   84 (123)
T ss_dssp             GGGTCCHHHHHHH---T-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCTTHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred             CCCccCHHHHHHH---h-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            3589998865443   3 389999999999999999999999999996  479999999999999999999999999999


Q ss_pred             HHHHHHHHcCChh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 032249           99 SQFREYCNAGNAE-GCSRSFQLIKQEYETLRRRLESYF  135 (144)
Q Consensus        99 ~~lE~~~~~~~~~-~~~~~~~~l~~~~~~~~~~L~~~l  135 (144)
                      ..||+.++.++.. .+...+..+..++..+..+.+.|+
T Consensus        85 ~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~  122 (123)
T 3iqt_A           85 QLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL  122 (123)
T ss_dssp             HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998754 778889999999999999998875

>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5

Probab=99.73  E-value=3.6e-19  Score=121.31  Aligned_cols=111  Identities=14%  Similarity=0.223  Sum_probs=88.3

Q ss_pred             CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 032249           19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC   98 (144)
Q Consensus        19 ~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~   98 (144)
                      +.|.+|+.++.+|+..   .+++++.+++..|+++.++.+..|+.+.+  ..|+..+.+.+|+|||||+++|+.+|+.+|
T Consensus         8 ~~~~~d~~~l~~L~~~---~g~~~~~e~~~~F~~e~~e~l~~L~~a~~--~~~~~~i~r~aH~LKGsAa~~Ga~~l~~~~   82 (120)
T 1y6d_A            8 NTDVLNQQKIEELSAE---IGSDNVPVLLDIFLGEMDSYIGTLTELQG--SEQLLYLKEISHALKSSAASFGADRLCERA   82 (120)
T ss_dssp             CCTTTTTTHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTTTSS--HHHHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CCccccHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHhhhHHHhCHHHHHHHH
Confidence            4688999988888765   46889999999999999999999998764  357888999999999999999999999999


Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 032249           99 SQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY  134 (144)
Q Consensus        99 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~  134 (144)
                      ..+|..+|.|+...+......+...+.+....++.|
T Consensus        83 ~~lE~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~  118 (120)
T 1y6d_A           83 IAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW  118 (120)
T ss_dssp             HHHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence            999999998766533333344444444444444443

>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6

Probab=99.71  E-value=3.7e-17  Score=110.19  Aligned_cols=102  Identities=17%  Similarity=0.219  Sum_probs=86.4

Q ss_pred             CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 032249           19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC   98 (144)
Q Consensus        19 ~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~   98 (144)
                      +.++||.+.+..+   . +|+++++.+++..|+++++.++..|..+.    .||   ++.+|+|||+|++||+.+|..+|
T Consensus         7 ~~~~iD~~~L~~~---~-~gd~~~~~elL~~F~~~~~~~l~~L~~a~----~~~---~~~aH~LKGsA~~iGA~~l~~~c   75 (113)
T 2ooc_A            7 ISGAVDFAYLEGF---A-AGDFAVVDEVLALFREQAALWAPMLDPTH----PGW---KDAVHTVKGAARGVGAFNLGEVC   75 (113)
T ss_dssp             --CCSCHHHHHHH---T-TTCHHHHHHHHHHHHHHHHHHGGGCSTTS----TTH---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCCcCHHHHHhH---h-CCCHHHHHHHHHHHHHHhHHHHHHHHHhh----HHH---HHHHHHHHHHHHHcCHHHHHHHH
Confidence            4578998877743   3 37999999999999999999999998862    465   89999999999999999999999


Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032249           99 SQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQ  136 (144)
Q Consensus        99 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~  136 (144)
                      ..+|..++.     ....+..|...+..+..+|...++
T Consensus        76 ~~lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~  108 (113)
T 2ooc_A           76 ERCEAGQES-----LEGVRTALDAALLDIAAYAHEQAL  108 (113)
T ss_dssp             HHHHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998875     456688889999999888888764

>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4

Probab=99.67  E-value=1.6e-16  Score=107.47  Aligned_cols=88  Identities=15%  Similarity=0.233  Sum_probs=77.1

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 032249           38 ANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSF  117 (144)
Q Consensus        38 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~  117 (144)
                      +.+..-.+++..|+++.+.++..|..++.  .+||..+++.+|+|||+++++|+..|+.+|.++|..++.++...+...+
T Consensus        28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~--~~D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i  105 (116)
T 1sr2_A           28 NAQLHASGYYALFVDTVPDDVKRLYTEAA--TSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI  105 (116)
T ss_dssp             HHHHHHHTTHHHHTTTHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchhchHHHHHHHHHHhHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34556677899999999999999999997  4799999999999999999999999999999999999999888777777


Q ss_pred             HHHHHHHHHH
Q 032249          118 QLIKQEYETL  127 (144)
Q Consensus       118 ~~l~~~~~~~  127 (144)
                      ..|...+.++
T Consensus       106 ~~L~~~l~~L  115 (116)
T 1sr2_A          106 SDIDSYVKSL  115 (116)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777666553

>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3

Probab=99.53  E-value=6.2e-14  Score=92.81  Aligned_cols=91  Identities=16%  Similarity=0.258  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhC------CCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChhhH
Q 032249           43 VEEVVSLFYSDSARLIQNIEQTLSN------RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAEGC  113 (144)
Q Consensus        43 ~~~ll~~Fl~~~~~~l~~L~~a~~~------~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~~  113 (144)
                      +.+++..|+++.++.+..|+.++..      ...++..+.+.+|+|||+|+++|+..+..+|..+|...   +.+.....
T Consensus         3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~   82 (105)
T 1tqg_A            3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT   82 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4678999999999999999998831      02367899999999999999999999999999999976   66776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032249          114 SRSFQLIKQEYETLRRRLES  133 (144)
Q Consensus       114 ~~~~~~l~~~~~~~~~~L~~  133 (144)
                      ...+..+...+..+...+..
T Consensus        83 ~~~~~~l~~~~d~l~~~l~~  102 (105)
T 1tqg_A           83 SDLLDKIFAGVDMITRMVDK  102 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            67788888888888777764

>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}

Probab=99.40  E-value=5.6e-13  Score=92.63  Aligned_cols=91  Identities=18%  Similarity=0.284  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhC------CCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChhhHH
Q 032249           44 EEVVSLFYSDSARLIQNIEQTLSN------RPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAEGCS  114 (144)
Q Consensus        44 ~~ll~~Fl~~~~~~l~~L~~a~~~------~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~~~  114 (144)
                      .+++..|++++++.+..|+.++..      ...++..+.+.+|+|||+|+++|+..+..+|..+|...   +.+......
T Consensus         3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~   82 (139)
T 2ld6_A            3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS   82 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            467999999999999999998831      13578999999999999999999999999999999866   566544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032249          115 RSFQLIKQEYETLRRRLESY  134 (144)
Q Consensus       115 ~~~~~l~~~~~~~~~~L~~~  134 (144)
                      ..+..+...+..+...+...
T Consensus        83 ~l~~~l~~~~D~l~~~l~~~  102 (139)
T 2ld6_A           83 DLLDKIFAGVDMITRMVDKI  102 (139)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666554

>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3

Probab=99.35  E-value=3e-12  Score=89.65  Aligned_cols=91  Identities=14%  Similarity=0.347  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHH---HHcCChhhHH
Q 032249           44 EEVVSLFYSDSARLIQNIEQTLSNR------PVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREY---CNAGNAEGCS  114 (144)
Q Consensus        44 ~~ll~~Fl~~~~~~l~~L~~a~~~~------~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~---~~~~~~~~~~  114 (144)
                      .+++..|+++.++.+..|+..+..-      ..++..+.+.+|+|||+|+++|+..+..+|..+|..   .+.+......
T Consensus         6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~   85 (146)
T 1i5n_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (146)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            3569999999999999999988221      124589999999999999999999999999999987   5666654444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032249          115 RSFQLIKQEYETLRRRLESY  134 (144)
Q Consensus       115 ~~~~~l~~~~~~~~~~L~~~  134 (144)
                      ..+..+...+..+...+..+
T Consensus        86 ~l~~~l~~~~D~l~~~l~~~  105 (146)
T 1i5n_A           86 DIINLFLETKDIMQEQLDAY  105 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55666666666665555544

>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}

Probab=99.35  E-value=3.2e-12  Score=85.66  Aligned_cols=91  Identities=15%  Similarity=0.279  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhC---CCC---CHHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHH---HHcCChhhHH
Q 032249           44 EEVVSLFYSDSARLIQNIEQTLSN---RPV---DFSRLDDILHQFKGSCSSIGAKKVKDACSQFREY---CNAGNAEGCS  114 (144)
Q Consensus        44 ~~ll~~Fl~~~~~~l~~L~~a~~~---~~~---D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~---~~~~~~~~~~  114 (144)
                      .+++..|++++++.+..|+..+..   ...   ++..+.+.+|+|||+|+++|+..+..+|..+|..   .+.+......
T Consensus         5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~   84 (113)
T 2lch_A            5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS   84 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            467999999999999999998731   112   3567999999999999999999999999999974   4566655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032249          115 RSFQLIKQEYETLRRRLESY  134 (144)
Q Consensus       115 ~~~~~l~~~~~~~~~~L~~~  134 (144)
                      ..+..+...+..+...+..+
T Consensus        85 ~l~~~l~~~~d~l~~~l~~~  104 (113)
T 2lch_A           85 DLIDKVKKKLDMVTRELDKK  104 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777766543

>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A

Probab=99.10  E-value=5.2e-10  Score=78.05  Aligned_cols=92  Identities=20%  Similarity=0.280  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhh---CCCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChhhH
Q 032249           43 VEEVVSLFYSDSARLIQNIEQTLS---NRPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAEGC  113 (144)
Q Consensus        43 ~~~ll~~Fl~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~~  113 (144)
                      ..+++..|++++.+.++.|+..+.   ....|   +..+.+.+|+|||+|+++|+..+..+|..+|...   +.+...--
T Consensus         9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~   88 (144)
T 3kyj_A            9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD   88 (144)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            467799999999999999998763   11123   4679999999999999999999999999999865   44544333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 032249          114 SRSFQLIKQEYETLRRRLESY  134 (144)
Q Consensus       114 ~~~~~~l~~~~~~~~~~L~~~  134 (144)
                      ...+..+...+..+...+...
T Consensus        89 ~~l~dlll~~~D~l~~lv~~~  109 (144)
T 3kyj_A           89 GEIVEILLFASDTLRAMLEET  109 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666655555544

>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}

Probab=98.84  E-value=1.8e-08  Score=74.91  Aligned_cols=91  Identities=15%  Similarity=0.371  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhhC---CCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH---cCChhhHH
Q 032249           44 EEVVSLFYSDSARLIQNIEQTLSN---RPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN---AGNAEGCS  114 (144)
Q Consensus        44 ~~ll~~Fl~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~---~~~~~~~~  114 (144)
                      .+++..|++++.+.+..|+..+..   ...|   ...+.+.+|+|||+|+++|+..+..+|..+|....   .+...--.
T Consensus         6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~   85 (225)
T 2lp4_A            6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT   85 (225)
T ss_dssp             GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence            356999999999999999997732   1123   46889999999999999999999999999998664   45543334


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032249          115 RSFQLIKQEYETLRRRLESY  134 (144)
Q Consensus       115 ~~~~~l~~~~~~~~~~L~~~  134 (144)
                      ..+..+...+..+...+..+
T Consensus        86 ~~~~ll~~~~D~l~~~l~~~  105 (225)
T 2lp4_A           86 DIINLFLETKDIMQEQLDAY  105 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1yvia1	142	a.24.10.2 (A:2-143) Histidine-containing phosphotr	4e-37
d1sr2a_	116	a.24.10.4 (A:) Sensor-like histidine kinase YojN,	2e-17
d2a0ba_	118	a.24.10.1 (A:) Aerobic respiration control sensor	2e-17
d2r25a1	166	a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak	1e-13
d1y6da_	114	a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h	6e-13
d2ooca1	104	a.24.10.6 (A:8-111) Histidine phosphotransferase S	5e-06
d1tqga_	105	a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {	6e-04
d1i5na_	128	a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {	0.002

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  121 bits (306), Expect = 4e-37
 Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 2/139 (1%)

Query: 3   SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQDDA-NPNFVEEVVSLFYSDSARLIQNI 61
           +  L+ Q+  +  S+F QG +D EQ  QL+ LQD+   P FV EVV+LF  D+ R+I  I
Sbjct: 2   AAALRDQLTALLSSMFSQGLVD-EQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEI 60

Query: 62  EQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIK 121
              L    V+F ++D  +HQ KGS +S+GA+KVK  C QFR++C   + +GC  +  +++
Sbjct: 61  ATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVR 120

Query: 122 QEYETLRRRLESYFQMVKQ 140
            ++  LR + ++  Q+ +Q
Sbjct: 121 NDFYDLRNKFQTMLQLEQQ 139

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 70.8 bits (173), Expect = 2e-17
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 3/112 (2%)

Query: 16  SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRL 75
            L +      E++ +     D+          +LF       ++ +    +    DF+ L
Sbjct: 7   QLIEVQLAQ-EEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAAL 63

Query: 76  DDILHQFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETL 127
               H+ KG  + +     K  C          +  G  +    I    ++L
Sbjct: 64  AQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSL 115

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

 Score = 70.8 bits (173), Expect = 2e-17
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 24  DSEQLI---QLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH 80
            SE L+    LE   +   P  + + +++F       +  +E  L+ +  D   + +  H
Sbjct: 2   KSEALLDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGH 59

Query: 81  QFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQ 136
           + KG+  S+G + ++    Q +        +      + +K+E+      L+++  
Sbjct: 60  KIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVA 115

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.0 bits (150), Expect = 1e-13
 Identities = 14/110 (12%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 23  LDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQF 82
           ++   L ++  + DD + +F + ++  F   +      +++ L +   + + LD++ H  
Sbjct: 8   INWTILNEIISM-DDDDSDFSKGLIIQFIDQAQTTFAQMQRQL-DGEKNLTELDNLGHFL 65

Query: 83  KGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLE 132
           KGS +++G +++   C + +           +++  +     +++   + 
Sbjct: 66  KGSSAALGLQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGIN 115

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

 Score = 59.0 bits (142), Expect = 6e-13
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 30  QLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSI 89
           ++E+L  +   + V  ++ +F  +    I  + +   +       L +I H  K S +S 
Sbjct: 10  KIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASF 67

Query: 90  GAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134
           GA ++ +      +   A   +        +       R    S+
Sbjct: 68  GADRLCERAIAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW 112

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 40.8 bits (95), Expect = 5e-06
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 20/114 (17%)

Query: 21  GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILH 80
           G +D   L          +   V+EV++LF   +A     ++              D +H
Sbjct: 1   GAVDFAYLEGF----AAGDFAVVDEVLALFREQAALWAPMLDP-------THPGWKDAVH 49

Query: 81  QFKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESY 134
             KG+   +GA  + + C +          E    S + ++   +     + +Y
Sbjct: 50  TVKGAARGVGAFNLGEVCERC---------EAGQESLEGVRTALDAALLDIAAY 94

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]} Length = 105

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 45  EVVSLFYSDSARLIQNIEQ---TLSNRPVDFSRLDDI---LHQFKGSCSSIGAKKVKDAC 98
           E + +F  ++   +QN+      L   P D   +++    LH  KG   ++G   +   C
Sbjct: 5   EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLC 64

Query: 99  SQFREYCNA---GNAEGCSRSFQLIKQEYETLRRRLES 133
                  +       +  S     I    + + R ++ 
Sbjct: 65  HTLENILDKARNSEIKITSDLLDKIFAGVDMITRMVDK 102

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]} Length = 128

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 44  EEVVSLFYSDSARLIQNIEQ---TLSNRPVDFSRLDDI---LHQFKGSCSSIGAKKVKDA 97
            +    F+ ++  L+ ++EQ    L     D  +L+ I    H  KG   + G   +++ 
Sbjct: 3   SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQET 62

Query: 98  CSQFREYCNA---GNAEGCSRSFQLIKQEYETLRRRLESY 134
                   +    G  +  +    L  +  + ++ +L++Y
Sbjct: 63  THLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAY 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1yvia1	142	Histidine-containing phosphotransfer protein HP1 {	99.96
d2a0ba_	118	Aerobic respiration control sensor protein, ArcB {	99.89
d2r25a1	166	Phosphorelay protein ypd1 {Baker's yeast (Saccharo	99.88
d1y6da_	114	Phosphorelay protein luxU {Vibrio harveyi [TaxId:	99.84
d1sr2a_	116	Sensor-like histidine kinase YojN, C-terminal doma	99.78
d2ooca1	104	Histidine phosphotransferase ShpA {Caulobacter cre	99.69
d1tqga_	105	Chemotaxis protein CheA P1 domain {Thermotoga mari	99.08
d1i5na_	128	Chemotaxis protein CheA P1 domain {Salmonella typh	99.05
d1nzea_	112	Oxygen-evolving enhancer protein 3, {Spinach (Spin	83.46
d1fpoa2	95	HSC20 (HSCB), C-terminal oligomerisation domain {E	81.82

>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.96  E-value=3e-28  Score=169.15  Aligned_cols=140  Identities=37%  Similarity=0.705  Sum_probs=128.1

Q ss_pred             hhHHHHHHHHhHhccCCCCCCCHHHHHHHHcccc-CCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q 032249            3 SNQLQHQVLYMRRSLFDQGYLDSEQLIQLEDLQD-DANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQ   81 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~lD~~~l~~L~~l~~-~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   81 (144)
                      +.-|++++..+.++++++|++|. .|.++..+.+ +|+|+|+.+++..|+++.+..+..|..+++..++||..++..+|+
T Consensus         2 ~~~l~~~~~~~~~~~~~~g~lD~-~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~   80 (142)
T d1yvia1           2 AAALRDQLTALLSSMFSQGLVDE-QFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQ   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCH-HHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhHHhcccccH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35689999999999999999995 6777766654 478999999999999999999999999997545699999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 032249           82 FKGSCSSIGAKKVKDACSQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQMVKQAKA  143 (144)
Q Consensus        82 LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~~~~~  143 (144)
                      |||+|+++|+.+++.+|..||.+++.++.+.+...+..|+.+|..++..|+.|++.++|.-|
T Consensus        81 LKGss~~lGa~~l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~~~~qi~~  142 (142)
T d1yvia1          81 LKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA  142 (142)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhHHhhccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhC
Confidence            99999999999999999999999999999999999999999999999999999999999754

>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Aerobic respiration control sensor protein, ArcB
domain: Aerobic respiration control sensor protein, ArcB
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.6e-23  Score=138.17  Aligned_cols=114  Identities=17%  Similarity=0.258  Sum_probs=107.2

Q ss_pred             CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 032249           19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC   98 (144)
Q Consensus        19 ~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~   98 (144)
                      ++++||++++.++...   .+++++.+++..|+++.+..+..|+.++.  .+|+..+++.+|+|||+|+++|+..|+.+|
T Consensus         3 ~e~~lD~~~L~~l~~~---~g~~~~~~~l~~F~~~~~~~l~~l~~a~~--~~d~~~~~~~aH~LKgsa~~~G~~~l~~~~   77 (118)
T d2a0ba_           3 SEALLDIPMLEQYLEL---VGPKLITDGLAVFEKMMPGYVSVLESNLT--AQDKKGIVEEGHKIKGAAGSVGLRHLQQLG   77 (118)
T ss_dssp             HHHHSCHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccCCHHHHHHHHHH---hCHHHHHHHHHHHHHHhHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            4578999999999877   46899999999999999999999999997  479999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032249           99 SQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQM  137 (144)
Q Consensus        99 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~  137 (144)
                      ..||..++.++.+.+..++..|...+.....+|+.|+..
T Consensus        78 ~~lE~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~~l~~  116 (118)
T d2a0ba_          78 QQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK  116 (118)
T ss_dssp             HHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999875

>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Phosphorelay protein ypd1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=7.3e-22  Score=139.90  Aligned_cols=119  Identities=15%  Similarity=0.344  Sum_probs=103.9

Q ss_pred             ccCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHH
Q 032249           16 SLFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVK   95 (144)
Q Consensus        16 ~~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~   95 (144)
                      |..+..+||+.+|++|..+.+ ++++|+.+++..|+++++..+..|+.++.+ .+|+..+...+|+|||+|+++|+.++.
T Consensus         1 ~~~p~~~id~~~l~~l~~m~~-~d~~f~~~li~~F~~~~~~~~~~l~~al~~-~~d~~~l~~~aH~lKgss~~~G~~~~~   78 (166)
T d2r25a1           1 STIPSEIINWTILNEIISMDD-DDSDFSKGLIIQFIDQAQTTFAQMQRQLDG-EKNLTELDNLGHFLKGSSAALGLQRIA   78 (166)
T ss_dssp             CCCCSCSSCHHHHHHHHHTTT-TSSHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCcccccCHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            456788999999999999965 799999999999999999999999999963 469999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCh--------------------------------------------hhHHHHHHHHHHHHHHHHHHH
Q 032249           96 DACSQFREYCNAGNA--------------------------------------------EGCSRSFQLIKQEYETLRRRL  131 (144)
Q Consensus        96 ~~~~~lE~~~~~~~~--------------------------------------------~~~~~~~~~l~~~~~~~~~~L  131 (144)
                      ..|..||+.++.++.                                            ..+...+...+..|..++.+|
T Consensus        79 ~~~~~ie~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~l~~I~~~L~~a~d~~~~a~~~L  158 (166)
T d2r25a1          79 WVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIEL  158 (166)
T ss_dssp             HHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHHhhhhcccccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999885421                                            124566777788888899999


Q ss_pred             HHHHH
Q 032249          132 ESYFQ  136 (144)
Q Consensus       132 ~~~l~  136 (144)
                      ..|+.
T Consensus       159 ~~~~~  163 (166)
T d2r25a1         159 SKYYN  163 (166)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            88875

>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein luxU
domain: Phosphorelay protein luxU
species: Vibrio harveyi [TaxId: 669]

Probab=99.84  E-value=1.2e-22  Score=135.21  Aligned_cols=112  Identities=14%  Similarity=0.211  Sum_probs=102.8

Q ss_pred             CCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHH
Q 032249           19 DQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDAC   98 (144)
Q Consensus        19 ~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~   98 (144)
                      ++++||..++++|.+..   +++++..++..|+++.+..+..|..++.  .+|++.++..+|+|||+|+++|+.+|+.+|
T Consensus         2 ~~~lld~~~l~~L~~~~---G~e~~~~ll~~F~~~~~~~~~~L~~a~~--~~d~~~l~~~aH~LKGsa~~~Ga~~L~~~~   76 (114)
T d1y6da_           2 NTDVLNQQKIEELSAEI---GSDNVPVLLDIFLGEMDSYIGTLTELQG--SEQLLYLKEISHALKSSAASFGADRLCERA   76 (114)
T ss_dssp             CCTTTTTTHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHHTTTTSS--HHHHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            57899999999998764   4678999999999999999999999996  479999999999999999999999999999


Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032249           99 SQFREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYF  135 (144)
Q Consensus        99 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l  135 (144)
                      ..||..++.++.+.+...+..+...+.+++.++++|.
T Consensus        77 ~~lE~~~~~~~~~~~~~~~~~l~~~~~~t~~a~r~w~  113 (114)
T d1y6da_          77 IAIDKKAKANQLQEQGMETSEMLALLHITRDAYRSWT  113 (114)
T ss_dssp             HHHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999998888888888999999999999998884

>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Sensor-like histidine kinase YojN, C-terminal domain
domain: Sensor-like histidine kinase YojN, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=4.2e-20  Score=123.55  Aligned_cols=108  Identities=14%  Similarity=0.183  Sum_probs=88.5

Q ss_pred             cCCCCCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHH
Q 032249           17 LFDQGYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKD   96 (144)
Q Consensus        17 ~~~~~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~   96 (144)
                      ..++.++|...+....... ++.+.++.+++..|+++.+.++..|+.+++  .+||..+++.+|+|||+++++|+..+..
T Consensus         8 l~~~~l~~~~~~~~~~~~d-~~~~~~~~~~~~lF~~~~p~~l~~L~~a~~--~~D~~~l~~~aH~LKGs~~~~Ga~~l~~   84 (116)
T d1sr2a_           8 LIEVQLAQEEVTESPLGGD-ENAQLHASGYYALFVDTVPDDVKRLYTEAA--TSDFAALAQTAHRLKGVFAMLNLVPGKQ   84 (116)
T ss_dssp             SCSSSSCSCCCCCCCSCSS-HHHHHHHHTTHHHHTTTHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhhhhHHHHHHhHhhcc-cchHHHHHHHHHHHHHhhHHHHHHHHHHHH--CcCHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            3455556644322222211 123557788999999999999999999997  4799999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHHH
Q 032249           97 ACSQFREYCNAGNAEGCSRSFQLIKQEYETL  127 (144)
Q Consensus        97 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~  127 (144)
                      +|..||..++.++.+.+...+.+|...+.++
T Consensus        85 ~~~~lE~~~~~~~~~~~~~ll~~le~~~~~l  115 (116)
T d1sr2a_          85 LCETLEHLIREKDVPGIEKYISDIDSYVKSL  115 (116)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998888765

>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.69  E-value=1.9e-17  Score=108.51  Aligned_cols=96  Identities=18%  Similarity=0.282  Sum_probs=74.6

Q ss_pred             CCCCHHHHHHHHccccCCChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhhhhhhhhhcHHHHHHHHHH
Q 032249           21 GYLDSEQLIQLEDLQDDANPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQFKGSCSSIGAKKVKDACSQ  100 (144)
Q Consensus        21 ~~lD~~~l~~L~~l~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~  100 (144)
                      |.||++++..+   .+ ||++++.+++..|+++.+..+..+       ..|++.++..+|+|||+|+++|+.+|..+|.+
T Consensus         1 gaiD~~~L~~~---~g-gd~~l~~~ll~~F~e~~~~~~~~l-------~~d~~~~~~~aH~LKGsa~~iGa~~L~~~a~~   69 (104)
T d2ooca1           1 GAVDFAYLEGF---AA-GDFAVVDEVLALFREQAALWAPML-------DPTHPGWKDAVHTVKGAARGVGAFNLGEVCER   69 (104)
T ss_dssp             CCSCHHHHHHH---TT-TCHHHHHHHHHHHHHHHHHHGGGC-------STTSTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CccCHHHHHHH---hC-CCHHHHHHHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHhHHHHcCHHHHHHHHHH
Confidence            46898766654   44 799999999999999999877544       25888999999999999999999999999999


Q ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032249          101 FREYCNAGNAEGCSRSFQLIKQEYETLRRRLESYFQ  136 (144)
Q Consensus       101 lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~  136 (144)
                      ||..++.++         .+..++......+.+|++
T Consensus        70 lE~~~~~~~---------~~~~~l~~~~~~i~~~~~   96 (104)
T d2ooca1          70 CEAGQESLE---------GVRTALDAALLDIAAYAH   96 (104)
T ss_dssp             HHTTSSCHH---------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccC---------chHHHHHHHHHHHHHHHH
Confidence            999877532         233444445555555544

>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=4.4e-10  Score=72.57  Aligned_cols=88  Identities=19%  Similarity=0.355  Sum_probs=64.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhhC---CCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHH---HcCChhhHHH
Q 032249           45 EVVSLFYSDSARLIQNIEQTLSN---RPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYC---NAGNAEGCSR  115 (144)
Q Consensus        45 ~ll~~Fl~~~~~~l~~L~~a~~~---~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~~~~  115 (144)
                      +++..|++++.+.+..++..+..   ...|   ...+.+.+|+|||+|+++|+..+..+|..+|...   +.+..+.-..
T Consensus         5 E~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~~~~~~~~~~~~   84 (105)
T d1tqga_           5 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSD   84 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            46999999999999999887721   1123   4678999999999999999999999999999864   3444332334


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 032249          116 SFQLIKQEYETLRRRLE  132 (144)
Q Consensus       116 ~~~~l~~~~~~~~~~L~  132 (144)
                      .+..+...+..+...+.
T Consensus        85 ~~~~l~~~~d~l~~~l~  101 (105)
T d1tqga_          85 LLDKIFAGVDMITRMVD  101 (105)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555555444

>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Chemotaxis protein CheA P1 domain
domain: Chemotaxis protein CheA P1 domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.05  E-value=8.1e-10  Score=73.61  Aligned_cols=89  Identities=15%  Similarity=0.337  Sum_probs=65.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhh---CCCCC---HHHHHHHHHhhhhhhhhhcHHHHHHHHHHHHHHHH---cCChhhHHH
Q 032249           45 EVVSLFYSDSARLIQNIEQTLS---NRPVD---FSRLDDILHQFKGSCSSIGAKKVKDACSQFREYCN---AGNAEGCSR  115 (144)
Q Consensus        45 ~ll~~Fl~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~---~~~~~~~~~  115 (144)
                      +++..|++++.+.+..++..+.   +...|   ...+.+.+|+|||+|+++|+..+..+|..+|....   .+...--..
T Consensus         4 e~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~~   83 (128)
T d1i5na_           4 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTD   83 (128)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            4689999999999999999872   22234   35889999999999999999999999999998654   454333334


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 032249          116 SFQLIKQEYETLRRRLES  133 (144)
Q Consensus       116 ~~~~l~~~~~~~~~~L~~  133 (144)
                      .+..+...+..+...+..
T Consensus        84 ~~~~l~~~~d~l~~~l~~  101 (128)
T d1i5na_          84 IINLFLETKDIMQEQLDA  101 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555555555554443

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=83.46  E-value=3.3  Score=25.31  Aligned_cols=74  Identities=14%  Similarity=0.122  Sum_probs=46.4

Q ss_pred             HHhHHHHHHHHHHHhhCCCCCHHHHHHHHHh--------hhhhhhhhcH----------HHHHHHHHHHHHHHHcCChhh
Q 032249           51 YSDSARLIQNIEQTLSNRPVDFSRLDDILHQ--------FKGSCSSIGA----------KKVKDACSQFREYCNAGNAEG  112 (144)
Q Consensus        51 l~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~--------LKGss~~lGa----------~~L~~~~~~lE~~~~~~~~~~  112 (144)
                      +.++.++|..|+..+++  ++|..++...|.        |.....+++.          ..|......|..+++.++...
T Consensus        15 i~~sa~~L~~l~~lI~k--~~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~LD~Aar~kd~~~   92 (112)
T d1nzea_          15 AKVSASEILNVKQFIDR--KAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTE   92 (112)
T ss_dssp             HHHHHHHHHTTHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            35677788899999974  799999988887        2333333322          345666666667777776665


Q ss_pred             HHHHHHHHHHHHHH
Q 032249          113 CSRSFQLIKQEYET  126 (144)
Q Consensus       113 ~~~~~~~l~~~~~~  126 (144)
                      +...+......+..
T Consensus        93 a~~~Y~~t~~~ld~  106 (112)
T d1nzea_          93 AEKYYGQTVSNINE  106 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55544444444433

>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: HSC20 (HSCB), C-terminal oligomerisation domain
family: HSC20 (HSCB), C-terminal oligomerisation domain
domain: HSC20 (HSCB), C-terminal oligomerisation domain
species: Escherichia coli [TaxId: 562]

Probab=81.82  E-value=2.9  Score=24.67  Aligned_cols=42  Identities=10%  Similarity=0.040  Sum_probs=19.4

Q ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Q 032249           39 NPNFVEEVVSLFYSDSARLIQNIEQTLSNRPVDFSRLDDILHQF   82 (144)
Q Consensus        39 ~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L   82 (144)
                      |++-+..+....-......+..+..+++  .+||......+.+|
T Consensus        34 d~~~l~~l~~ei~~~~~~~~~~l~~~~~--~~d~~~A~~~~~kL   75 (95)
T d1fpoa2          34 DEARLESFIKRVKKMFDTRHQLMVEQLD--NETWDAAADTCRKL   75 (95)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHh
Confidence            4444444444444444444444555444  24555555444444