Citrus Sinensis ID: 032269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEcccccHHHHHHHHccccccccccccccccccEEEEEEEEEccccccccHHHHHccEEEEEEcEEcccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHcccccccccccccccccccccccccccccEEEEEcEEEEEEEccccEEEEEEEccccHHHHHHHHccccccccccccccccEEEEEEccEEccccccccHHHHHccEEEccccEEcccEEEEcccHHHccc
Coil and Loop (DISEMBL)
MATLSSAMVstsfirskptatslkampNMGQAIFGlkanrggrVVAMATYKVKlitpggeeeincpddsfILDAAEEagldlpyscragacssctgkvvsgtvdqseqsfldddqmgeGFVLTcaayptsdvtieTHKEEELAG
Flexible Loop (DISEMBL)
matlssamvstsfirskptatslkampNMGQAIFGLKANRGGRVVAMATYKVKlitpggeeeincPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIEThkeeelag
Low Complexity Region (SEG)
MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG
Disordered region (IsUnstruct)
*****************************GQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV******FLDDDQMGEGFVLTCAAYPTSDV************
Disordered Region (DISOPRED)
*************************************************YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG
Disordered Region (DISEMBL)
***********SFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG
Disordered Region (DISPRO)
*************************************ANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKE****G
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
P16972	148	Ferredoxin-2, chloroplast	yes	no	0.965	0.939	0.725	8e-56
Q9ZTS2	144	Ferredoxin, chloroplastic	N/A	no	1.0	1.0	0.659	1e-53
Q43517	144	Ferredoxin-1, chloroplast	N/A	no	0.986	0.986	0.669	2e-52
O04090	148	Ferredoxin-1, chloroplast	no	no	0.965	0.939	0.697	6e-50
O04683	148	Ferredoxin-1, chloroplast	N/A	no	0.965	0.939	0.657	3e-48
P04669	146	Ferredoxin, chloroplastic	N/A	no	0.965	0.952	0.652	5e-47
P09911	149	Ferredoxin-1, chloroplast	N/A	no	0.965	0.932	0.609	2e-44
P00221	147	Ferredoxin-1, chloroplast	N/A	no	0.868	0.850	0.658	5e-43
P00227	96	Ferredoxin OS=Brassica na	N/A	no	0.659	0.989	0.821	6e-42
P14938	96	Ferredoxin, leaf L-A OS=R	N/A	no	0.659	0.989	0.8	7e-42

>sp|P16972|FER2_ARATH Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1

 Score =  215 bits (547), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 122/142 (85%), Gaps = 3/142 (2%)

Query: 4   LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGE 60
           LSSA+V TSFIR  P   SL+++P+   Q++FGLK+   RGGRV AMATYKVK ITP GE
Sbjct: 6   LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGE 65

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
            E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+Q+GEGF
Sbjct: 66  LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGF 125

Query: 121 VLTCAAYPTSDVTIETHKEEEL 142
           VLTCAAYPTSDVTIETHKEE++
Sbjct: 126 VLTCAAYPTSDVTIETHKEEDI 147

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZTS2|FER_CAPAN Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1

 Score =  207 bits (527), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 95/144 (65%), Positives = 117/144 (81%)

Query: 1   MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGE 60
           MA++S+ M+STSF+  KP  TSLK +PN+G+A+FGLK+  GG+V  MA+YKVKLITP G 
Sbjct: 1   MASVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGP 60

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
            E +CPD+ +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+
Sbjct: 61  IEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGW 120

Query: 121 VLTCAAYPTSDVTIETHKEEELAG 144
           VLTC AYP SDVTIETHKE EL G
Sbjct: 121 VLTCVAYPQSDVTIETHKEAELVG 144

Delays the harpin-mediated hypersensitive response.

Capsicum annuum (taxid: 4072)

>sp|Q43517|FER1_SOLLC Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/142 (66%), Positives = 113/142 (79%)

Query: 1   MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGE 60
           MA++S  M+STSF+  KP  TSLKA+ N+G+A+FGLK+ R GR+  MA+YKVKLITP G 
Sbjct: 1   MASISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGP 60

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
            E  CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G+VDQS+ +FLD+DQ   GF
Sbjct: 61  IEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGF 120

Query: 121 VLTCAAYPTSDVTIETHKEEEL 142
           VLTC AYP  DVTIETHKEEEL
Sbjct: 121 VLTCVAYPKGDVTIETHKEEEL 142

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Solanum lycopersicum (taxid: 4081)

>sp|O04090|FER1_ARATH Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1

 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/142 (69%), Positives = 121/142 (85%), Gaps = 3/142 (2%)

Query: 4   LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGE 60
           LSSA+VSTSF+R + T  SL+++P    Q++FGLK++  RGGRV AMATYKVK ITP GE
Sbjct: 6   LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGE 65

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
           +E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+QM EG+
Sbjct: 66  QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGY 125

Query: 121 VLTCAAYPTSDVTIETHKEEEL 142
           VLTC AYPTSDV IETHKEE +
Sbjct: 126 VLTCVAYPTSDVVIETHKEEAI 147

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|O04683|FER1_MESCR Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/143 (65%), Positives = 115/143 (80%), Gaps = 4/143 (2%)

Query: 2   ATLSSAMVSTSFIRSKPTATSLKAMP-NMGQAIFGLKANRG-GRVVAMATYKVKLITPGG 59
           A LS A +ST+F    P  T+  A+P N+G+A+FGLK++   GRV AMA YKV L+TP G
Sbjct: 6   AALSGATMSTAFAPKTPPMTA--ALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEG 63

Query: 60  EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEG 119
           ++E+ CPDD +ILDAAEEAG+DLPYSCRAG+CSSC GKV SG+V+Q + SFLDDDQ+ EG
Sbjct: 64  KQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEG 123

Query: 120 FVLTCAAYPTSDVTIETHKEEEL 142
           +VLTC AYPT DVTIETHKEEEL
Sbjct: 124 WVLTCVAYPTGDVTIETHKEEEL 146

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P04669|FER_SILPR Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1

 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 114/144 (79%), Gaps = 5/144 (3%)

Query: 2   ATLSSAMVSTSFI-RSKPTATSLKAMP-NMGQAIFGLKANRGGRVVAMATYKVKLITP-G 58
           +TLS+  VS S + + +P   S  ++P NMGQA+FGLKA   GRV AMATYKV LIT   
Sbjct: 3   STLSTLSVSASLLPKQQPMVAS--SLPTNMGQALFGLKAGSRGRVTAMATYKVTLITKES 60

Query: 59  GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGE 118
           G    +CPDD ++LD AEE G+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQ+  
Sbjct: 61  GTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEA 120

Query: 119 GFVLTCAAYPTSDVTIETHKEEEL 142
           G+VLTCAAYP++DVTIETHKEEEL
Sbjct: 121 GWVLTCAAYPSADVTIETHKEEEL 144

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Silene pratensis (taxid: 52853)

>sp|P09911|FER1_PEA Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2

 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 101/141 (71%), Gaps = 2/141 (1%)

Query: 4   LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKAN--RGGRVVAMATYKVKLITPGGEE 61
           L    VSTSF+R++P   S+           GLK +  RG   VAMA+YKVKL+TP G +
Sbjct: 7   LYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQ 66

Query: 62  EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV 121
           E  CP D +ILD AEE G+DLPYSCRAG+CSSC GKVV G VDQS+ SFLDD+Q+  GFV
Sbjct: 67  EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFV 126

Query: 122 LTCAAYPTSDVTIETHKEEEL 142
           LTC AYPTSDV IETHKEE+L
Sbjct: 127 LTCVAYPTSDVVIETHKEEDL 147

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Pisum sativum (taxid: 3888)

>sp|P00221|FER1_SPIOL Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2

 Score =  172 bits (437), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/129 (65%), Positives = 104/129 (80%), Gaps = 4/129 (3%)

Query: 17  KPTATSL-KAMP-NMGQAIFGLK-ANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILD 73
           KP A  +  A+P N G+++FGLK  +RGGR+  MA YKV L+TP G  E  CPDD +ILD
Sbjct: 18  KPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTPTGNVEFQCPDDVYILD 76

Query: 74  AAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVT 133
           AAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQ+ EG+VLTCAAYP SDVT
Sbjct: 77  AAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVT 136

Query: 134 IETHKEEEL 142
           IETHKEEEL
Sbjct: 137 IETHKEEEL 145

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Spinacia oleracea (taxid: 3562)

>sp|P00227|FER_BRANA Ferredoxin OS=Brassica napus PE=1 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 87/95 (91%)

Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS+
Sbjct: 1   ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSD 60

Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           +SFLDDDQ+ EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct: 61  ESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Brassica napus (taxid: 3708)

>sp|P14938|FER3_RAPSA Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1

 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 76/95 (80%), Positives = 88/95 (92%)

Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+
Sbjct: 1   ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSD 60

Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QSFLDDDQ+ EGFVLTCAAYPTSDVTIETH+EE++
Sbjct: 61  QSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Raphanus sativus (taxid: 3726)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
45357074	144	chloroplast ferredoxin I [Nicotiana taba	1.0	1.0	0.708	2e-55
78192120	144	chloroplast Tsip1-interacting ferredoxin	1.0	1.0	0.701	4e-55
58045197	144	chloroplast ferredoxin I [Nicotiana taba	1.0	1.0	0.708	7e-55
225448219	142	PREDICTED: ferredoxin-1, chloroplastic-l	0.972	0.985	0.732	2e-54
297840471	148	fed A [Arabidopsis lyrata subsp. lyrata]	0.965	0.939	0.718	4e-54
312281725	148	unnamed protein product [Thellungiella h	0.965	0.939	0.718	5e-54
15219837	148	ferredoxin-2 [Arabidopsis thaliana] gi|1	0.965	0.939	0.725	5e-54
224118360	147	predicted protein [Populus trichocarpa]	0.986	0.965	0.722	1e-53
357519339	148	Ferredoxin I [Medicago truncatula] gi|35	0.979	0.952	0.695	2e-53
255579667	145	Ferredoxin-2, chloroplast precursor, put	0.958	0.951	0.705	2e-52

>gi|45357074|gb|AAS58496.1| chloroplast ferredoxin I [Nicotiana tabacum]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 118/144 (81%)

Query: 1   MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGE 60
           MA++S  MVSTSF+  KP  TSLKA+PN+GQA+FGLK+ RGGR+  MA+YKVKLITP G 
Sbjct: 1   MASISGTMVSTSFLPRKPVVTSLKAIPNVGQALFGLKSERGGRITCMASYKVKLITPEGT 60

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
            E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV  G VDQS+ +FLDDDQM +GF
Sbjct: 61  VEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTGGNVDQSDGNFLDDDQMADGF 120

Query: 121 VLTCAAYPTSDVTIETHKEEELAG 144
           VLTC AYP SDVTIETHKEEEL G
Sbjct: 121 VLTCVAYPQSDVTIETHKEEELTG 144

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78192120|gb|ABB30150.1| chloroplast Tsip1-interacting ferredoxin [Nicotiana tabacum]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/144 (70%), Positives = 118/144 (81%)

Query: 1   MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGE 60
           MA++S  MVSTSF+  KP  TSLKA+PN+GQA+FGLK+ RGGR+  MA+YKVKLITP G 
Sbjct: 1   MASISGTMVSTSFLPRKPVVTSLKAIPNVGQALFGLKSERGGRITCMASYKVKLITPEGT 60

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
            E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV  G +DQS+ +FLDDDQM +GF
Sbjct: 61  VEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTGGNIDQSDGNFLDDDQMADGF 120

Query: 121 VLTCAAYPTSDVTIETHKEEELAG 144
           VLTC AYP SDVTIETHKEEEL G
Sbjct: 121 VLTCVAYPQSDVTIETHKEEELTG 144

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58045197|gb|AAW64931.1| chloroplast ferredoxin I [Nicotiana tabacum]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 117/144 (81%)

Query: 1   MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGE 60
           MA++S  MVSTSF+  KP  TSLKA+PN+GQA+FGLK+ RGGR+  MA+YKVKLITP G 
Sbjct: 1   MASISGTMVSTSFLPRKPVVTSLKAIPNVGQALFGLKSERGGRITCMASYKVKLITPEGT 60

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
            E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV  G VDQS+ +FLDDDQM  GF
Sbjct: 61  VEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTGGNVDQSDGNFLDDDQMAGGF 120

Query: 121 VLTCAAYPTSDVTIETHKEEELAG 144
           VLTC AYP SDVTIETHKEEEL G
Sbjct: 121 VLTCVAYPQSDVTIETHKEEELTG 144

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448219|ref|XP_002269617.1| PREDICTED: ferredoxin-1, chloroplastic-like [Vitis vinifera]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/142 (73%), Positives = 120/142 (84%), Gaps = 2/142 (1%)

Query: 1   MATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGE 60
           MATLS AMVSTSFIR +P  TSL+A+PN+GQA+FGLKA RG RV AMA YKVKLITP G 
Sbjct: 1   MATLSGAMVSTSFIRRQPV-TSLRALPNVGQALFGLKAGRG-RVTAMAVYKVKLITPEGA 58

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
           +E  CPDD ++LD AEE G+DLPYSCRAG+CSSC G+VV GTVDQS+ SFL+D+QM EG+
Sbjct: 59  KEFECPDDVYVLDHAEEIGIDLPYSCRAGSCSSCAGRVVEGTVDQSDGSFLEDEQMEEGW 118

Query: 121 VLTCAAYPTSDVTIETHKEEEL 142
           VLTC AYP SD+ IETHKEEEL
Sbjct: 119 VLTCVAYPQSDLVIETHKEEEL 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840471|ref|XP_002888117.1| fed A [Arabidopsis lyrata subsp. lyrata] gi|297333958|gb|EFH64376.1| fed A [Arabidopsis lyrata subsp. lyrata]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 102/142 (71%), Positives = 123/142 (86%), Gaps = 3/142 (2%)

Query: 4   LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGE 60
           LSSA+V TSFIR  P   SL+++P+   Q++FGLK+   RGGRV AMATYKVK ITP GE
Sbjct: 6   LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGE 65

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
           +E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+Q+G+GF
Sbjct: 66  QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGQGF 125

Query: 121 VLTCAAYPTSDVTIETHKEEEL 142
           VLTCAAYPTSDVTIETHKE++L
Sbjct: 126 VLTCAAYPTSDVTIETHKEDDL 147

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281725|dbj|BAJ33728.1| unnamed protein product [Thellungiella halophila]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 102/142 (71%), Positives = 124/142 (87%), Gaps = 3/142 (2%)

Query: 4   LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKA--NRGGRVVAMATYKVKLITPGGE 60
           LSSA+V TSFIR +    SL+++P+   Q++FGLK+  +RGGRV AMATYKVK ITP GE
Sbjct: 6   LSSAIVGTSFIRRQTAPISLRSLPSGNTQSLFGLKSATSRGGRVTAMATYKVKFITPEGE 65

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
           +E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQ+GEGF
Sbjct: 66  QEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVTGSVDQSDQSFLDDDQIGEGF 125

Query: 121 VLTCAAYPTSDVTIETHKEEEL 142
           VLTCAAYPTSDVTIETHKEE++
Sbjct: 126 VLTCAAYPTSDVTIETHKEEDI 147

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219837|ref|NP_176291.1| ferredoxin-2 [Arabidopsis thaliana] gi|119975|sp|P16972.1|FER2_ARATH RecName: Full=Ferredoxin-2, chloroplastic; Short=AtFd2; Flags: Precursor gi|11692908|gb|AAG40057.1|AF324706_1 At1g60950 [Arabidopsis thaliana] gi|11908076|gb|AAG41467.1|AF326885_1 putative ferrodoxin precursor protein [Arabidopsis thaliana] gi|12323344|gb|AAG51652.1|AC018908_18 ferrodoxin precursor; 39650-40096 [Arabidopsis thaliana] gi|12642890|gb|AAK00387.1|AF339705_1 putative ferrodoxin precursor protein [Arabidopsis thaliana] gi|16437|emb|CAA35754.1| ferredoxin precursor [Arabidopsis thaliana] gi|166698|gb|AAA32790.1| ferrodoxin A [Arabidopsis thaliana] gi|20260270|gb|AAM13033.1| ferrodoxin precursor [Arabidopsis thaliana] gi|22136516|gb|AAM91336.1| ferrodoxin precursor [Arabidopsis thaliana] gi|110740859|dbj|BAE98526.1| ferrodoxin precursor [Arabidopsis thaliana] gi|332195631|gb|AEE33752.1| ferredoxin-2 [Arabidopsis thaliana]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 122/142 (85%), Gaps = 3/142 (2%)

Query: 4   LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGE 60
           LSSA+V TSFIR  P   SL+++P+   Q++FGLK+   RGGRV AMATYKVK ITP GE
Sbjct: 6   LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGE 65

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
            E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+Q+GEGF
Sbjct: 66  LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGF 125

Query: 121 VLTCAAYPTSDVTIETHKEEEL 142
           VLTCAAYPTSDVTIETHKEE++
Sbjct: 126 VLTCAAYPTSDVTIETHKEEDI 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118360|ref|XP_002331463.1| predicted protein [Populus trichocarpa] gi|118487669|gb|ABK95659.1| unknown [Populus trichocarpa] gi|118489201|gb|ABK96407.1| unknown [Populus trichocarpa x Populus deltoides] gi|222873541|gb|EEF10672.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 120/144 (83%), Gaps = 2/144 (1%)

Query: 2   ATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEE 61
           A LSSAMVSTSF R  P  TSL+A+PN+G+++ GLKA+RGGRV AMA Y VKLITP GE+
Sbjct: 5   AALSSAMVSTSFTRRVPV-TSLRALPNVGESLLGLKASRGGRVKAMAAYTVKLITPDGEK 63

Query: 62  EINCPDDSFILDAAEEAG-LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
           E  CPDD +ILD AEEA  +DLPYSCRAG+CSSC GK+V GTVDQS+ SFLDDDQ+ EG+
Sbjct: 64  EFACPDDIYILDHAEEAEEIDLPYSCRAGSCSSCLGKIVKGTVDQSDASFLDDDQIEEGW 123

Query: 121 VLTCAAYPTSDVTIETHKEEELAG 144
           VLTC AYPTSDV IETHKEEE +G
Sbjct: 124 VLTCVAYPTSDVVIETHKEEEFSG 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519339|ref|XP_003629958.1| Ferredoxin I [Medicago truncatula] gi|355523980|gb|AET04434.1| Ferredoxin I [Medicago truncatula]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/141 (69%), Positives = 112/141 (79%)

Query: 2   ATLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEE 61
           A LS  MVSTSFIR +P  TSL A PN+GQ +FG+KA RG R+ AMATYKVKLITP G +
Sbjct: 6   AALSGTMVSTSFIRRQPMNTSLTAFPNVGQTLFGVKAGRGSRITAMATYKVKLITPDGTK 65

Query: 62  EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV 121
           E+ CPD+ +ILD AEE G+DLPYSCRAGACSSC  KVV G VD S+ SFLDDDQ+  GFV
Sbjct: 66  ELTCPDNEYILDVAEEQGIDLPYSCRAGACSSCAAKVVEGEVDNSDNSFLDDDQLSAGFV 125

Query: 122 LTCAAYPTSDVTIETHKEEEL 142
           LTC AYP SD+ IETHKEE+L
Sbjct: 126 LTCVAYPRSDLVIETHKEEDL 146

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579667|ref|XP_002530673.1| Ferredoxin-2, chloroplast precursor, putative [Ricinus communis] gi|223529766|gb|EEF31704.1| Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/139 (70%), Positives = 119/139 (85%), Gaps = 1/139 (0%)

Query: 4   LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEI 63
           LSSA+VSTSF R +P  TSL+A+PN+GQA+FGL ++RGG+  AMA +KVKLITP GE+E+
Sbjct: 6   LSSAVVSTSFTRRQPV-TSLRALPNVGQALFGLNSSRGGKFKAMAVHKVKLITPEGEKEL 64

Query: 64  NCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT 123
            CPDD +ILD  EEAG+DLPYSCRAG+CSSC GKVVSGT+DQS+ SFLDD+QM  G+VLT
Sbjct: 65  ECPDDVYILDHFEEAGVDLPYSCRAGSCSSCAGKVVSGTLDQSDGSFLDDEQMEAGWVLT 124

Query: 124 CAAYPTSDVTIETHKEEEL 142
           C AYP SD+ IETHKEE+L
Sbjct: 125 CVAYPQSDLVIETHKEEDL 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2206061	148	FED A [Arabidopsis thaliana (t	0.965	0.939	0.725	5.6e-52
TAIR|locus:2197349	148	FD1 "ferredoxin 1" [Arabidopsi	0.965	0.939	0.697	4.6e-50
UNIPROTKB|P00221	147	PETF "Ferredoxin-1, chloroplas	0.965	0.945	0.620	1.5e-42
UNIPROTKB|P09911	149	PETF "Ferredoxin-1, chloroplas	0.986	0.953	0.605	6.6e-42
UNIPROTKB|P68163	97	P68163 "Ferredoxin" [Datura in	0.673	1.0	0.762	1.5e-37
UNIPROTKB|P68164	97	P68164 "Ferredoxin" [Datura me	0.673	1.0	0.762	1.5e-37
UNIPROTKB|P27320	97	petF "Ferredoxin-1" [Synechocy	0.666	0.989	0.760	1.9e-37
UNIPROTKB|P83522	97	P83522 "Ferredoxin" [Hordeum v	0.659	0.979	0.778	3e-37
UNIPROTKB|P83520	97	P83520 "Ferredoxin" [Brugmansi	0.673	1.0	0.752	3.9e-37
UNIPROTKB|P83583	97	P83583 "Ferredoxin" [Solanum l	0.673	1.0	0.752	3.9e-37

TAIR|locus:2206061 FED A [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 103/142 (72%), Positives = 122/142 (85%)

Query:     4 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGE 60
             LSSA+V TSFIR  P   SL+++P+   Q++FGLK+   RGGRV AMATYKVK ITP GE
Sbjct:     6 LSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGE 65

Query:    61 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
              E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+Q+GEGF
Sbjct:    66 LEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGF 125

Query:   121 VLTCAAYPTSDVTIETHKEEEL 142
             VLTCAAYPTSDVTIETHKEE++
Sbjct:   126 VLTCAAYPTSDVTIETHKEEDI 147

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP;TAS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=TAS

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2197349 FD1 "ferredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 99/142 (69%), Positives = 121/142 (85%)

Query:     4 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGE 60
             LSSA+VSTSF+R + T  SL+++P    Q++FGLK++  RGGRV AMATYKVK ITP GE
Sbjct:     6 LSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGE 65

Query:    61 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
             +E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+QM EG+
Sbjct:    66 QEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGY 125

Query:   121 VLTCAAYPTSDVTIETHKEEEL 142
             VLTC AYPTSDV IETHKEE +
Sbjct:   126 VLTCVAYPTSDVVIETHKEEAI 147

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

UNIPROTKB|P00221 PETF "Ferredoxin-1, chloroplastic" [Spinacia oleracea (taxid:3562)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 90/145 (62%), Positives = 115/145 (79%)

Query:     2 ATLSSAM-VSTSFIRSKPTATSLKA-MP-NMGQAIFGLKA-NRGGRVVAMATYKVKLITP 57
             AT ++ M ++T+F+  KP A  + A +P N G+++FGLK  +RGGR+  MA YKV L+TP
Sbjct:     3 ATTTTMMGMATTFV-PKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTP 60

Query:    58 GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMG 117
              G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQ+ 
Sbjct:    61 TGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQID 120

Query:   118 EGFVLTCAAYPTSDVTIETHKEEEL 142
             EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:   121 EGWVLTCAAYPVSDVTIETHKEEEL 145

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P09911 PETF "Ferredoxin-1, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 89/147 (60%), Positives = 104/147 (70%)

Query:     1 MAT---LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKAN--RGGRVVAMATYKVKLI 55
             MAT   L    VSTSF+R++P   S+           GLK +  RG   VAMA+YKVKL+
Sbjct:     1 MATTPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLV 60

Query:    56 TPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQ 115
             TP G +E  CP D +ILD AEE G+DLPYSCRAG+CSSC GKVV G VDQS+ SFLDD+Q
Sbjct:    61 TPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 120

Query:   116 MGEGFVLTCAAYPTSDVTIETHKEEEL 142
             +  GFVLTC AYPTSDV IETHKEE+L
Sbjct:   121 IEAGFVLTCVAYPTSDVVIETHKEEDL 147

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P68163 P68163 "Ferredoxin" [Datura inoxia (taxid:4075)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/97 (76%), Positives = 82/97 (84%)

Query:    48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
             ATYKVKL+TP G  E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+
Sbjct:     1 ATYKVKLVTPDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSD 60

Query:   108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 144
              ++LDDDQM EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:    61 GNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P68164 P68164 "Ferredoxin" [Datura metel (taxid:35625)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 74/97 (76%), Positives = 82/97 (84%)

Query:    48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
             ATYKVKL+TP G  E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+
Sbjct:     1 ATYKVKLVTPDGPVEFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSD 60

Query:   108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 144
              ++LDDDQM EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:    61 GNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P27320 petF "Ferredoxin-1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 73/96 (76%), Positives = 84/96 (87%)

Query:    47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
             MA+Y VKLITP GE  I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS
Sbjct:     1 MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 60

Query:   107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
             +QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct:    61 DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96

GO:0005515 "protein binding" evidence=IPI

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

UNIPROTKB|P83522 P83522 "Ferredoxin" [Hordeum vulgare (taxid:4513)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 74/95 (77%), Positives = 83/95 (87%)

Query:    48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
             ATYKVKL+TP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GK+VSG +DQS+
Sbjct:     1 ATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSD 60

Query:   108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
             QSFLDDDQM EG+VLTCAAYP SDV IETHKEEEL
Sbjct:    61 QSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

UNIPROTKB|P83520 P83520 "Ferredoxin" [Brugmansia arborea (taxid:41689)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 73/97 (75%), Positives = 82/97 (84%)

Query:    48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
             ATYKVKL+TP G  E +CPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+
Sbjct:     1 ATYKVKLVTPDGPVEFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSD 60

Query:   108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 144
              +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:    61 GNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P83583 P83583 "Ferredoxin" [Solanum lyratum (taxid:230192)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 73/97 (75%), Positives = 82/97 (84%)

Query:    48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
             ATYKVKLITP G  E NCPDD +ILD+AEE G DLPYSCRAGACSSC GK+ +G VDQS+
Sbjct:     1 ATYKVKLITPEGPVEFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSD 60

Query:   108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 144
              SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:    61 NSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=NAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00228	FER_WHEAT	No assigned EC number	0.7169	0.7361	0.7412	N/A	no
P00243	FER_SYNY4	No assigned EC number	0.7604	0.6666	0.9896	N/A	no
P00244	FER1_APHFL	No assigned EC number	0.7628	0.6666	0.9795	N/A	no
P83527	FER_CAPAA	No assigned EC number	0.7216	0.6736	1.0	N/A	no
P00222	FER_COLES	No assigned EC number	0.7473	0.6597	0.9793	N/A	no
P0A3D3	FER1_SYNP6	No assigned EC number	0.7448	0.6666	0.9696	yes	no
P14938	FER3_RAPSA	No assigned EC number	0.8	0.6597	0.9895	N/A	no
P00226	FER_SAMNI	No assigned EC number	0.7368	0.6597	0.9793	N/A	no
P00227	FER_BRANA	No assigned EC number	0.8210	0.6597	0.9895	N/A	no
P00224	FER2_SPIOL	No assigned EC number	0.7684	0.6597	0.9793	N/A	no
P00225	FER_LEULE	No assigned EC number	0.7157	0.6597	0.9895	N/A	no
P27789	FER5_MAIZE	No assigned EC number	0.6153	0.8541	0.9111	N/A	no
O04683	FER1_MESCR	No assigned EC number	0.6573	0.9652	0.9391	N/A	no
Q43517	FER1_SOLLC	No assigned EC number	0.6690	0.9861	0.9861	N/A	no
Q9ZTS2	FER_CAPAN	No assigned EC number	0.6597	1.0	1.0	N/A	no
P04669	FER_SILPR	No assigned EC number	0.6527	0.9652	0.9520	N/A	no
P83525	FER_SCOJA	No assigned EC number	0.7422	0.6736	1.0	N/A	no
Q0J8M2	FER1_ORYSJ	No assigned EC number	0.7058	0.7083	0.7338	yes	no
P0A3D2	FER1_SYNE7	No assigned EC number	0.7448	0.6666	0.9696	yes	no
P81373	FERB_ALOMA	No assigned EC number	0.7604	0.6597	0.9693	N/A	no
P81372	FERA_ALOMA	No assigned EC number	0.7368	0.6597	0.9793	N/A	no
P83526	FER_TOBAC	No assigned EC number	0.7578	0.6597	0.9793	N/A	no
P84874	FER2_HYONI	No assigned EC number	0.7422	0.6736	1.0	N/A	no
P83520	FER_DATAR	No assigned EC number	0.7525	0.6736	1.0	N/A	no
P84872	FER_ATRBE	No assigned EC number	0.7525	0.6736	1.0	N/A	no
P83522	FER_HORVU	No assigned EC number	0.7789	0.6597	0.9793	N/A	no
P83523	FER_LYCCN	No assigned EC number	0.7319	0.6736	1.0	N/A	no
P27320	FER_SYNY3	No assigned EC number	0.7604	0.6666	0.9896	N/A	no
P00238	FER_SCEQU	No assigned EC number	0.7894	0.6597	0.9895	N/A	no
P00221	FER1_SPIOL	No assigned EC number	0.6589	0.8680	0.8503	N/A	no
A2YQD9	FER1_ORYSI	No assigned EC number	0.7058	0.7083	0.7338	N/A	no
P00230	FER1_PHYAN	No assigned EC number	0.75	0.6666	1.0	N/A	no
P00233	FER_GLEJA	No assigned EC number	0.7684	0.6597	1.0	N/A	no
P27787	FER1_MAIZE	No assigned EC number	0.6296	0.9305	0.8933	N/A	no
P83524	FER_PHYAF	No assigned EC number	0.7578	0.6597	0.9793	N/A	no
P07839	FER_CHLRE	No assigned EC number	0.7238	0.7222	0.8253	N/A	no
P56408	FER_CHLFU	No assigned EC number	0.7956	0.6458	0.9893	N/A	no
P83582	FER_SOLNI	No assigned EC number	0.7422	0.6736	1.0	N/A	no
P83583	FER_SOLLY	No assigned EC number	0.7525	0.6736	1.0	N/A	no
P83584	FER_SOLLS	No assigned EC number	0.7628	0.6736	1.0	N/A	no
P83585	FER_SOLAB	No assigned EC number	0.7368	0.6597	0.9793	N/A	no
P00229	FER1_PHYAM	No assigned EC number	0.7473	0.6597	0.9895	N/A	no
P68166	FER_DATQU	No assigned EC number	0.7628	0.6736	1.0	N/A	no
P09911	FER1_PEA	No assigned EC number	0.6099	0.9652	0.9328	N/A	no
P68164	FER_DATME	No assigned EC number	0.7628	0.6736	1.0	N/A	no
P68163	FER_DATIN	No assigned EC number	0.7628	0.6736	1.0	N/A	no
P68165	FER_DATST	No assigned EC number	0.7628	0.6736	1.0	N/A	no
P84873	FER1_HYONI	No assigned EC number	0.7422	0.6736	1.0	N/A	no
P16972	FER2_ARATH	No assigned EC number	0.7253	0.9652	0.9391	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
PLN03136	148	PLN03136, PLN03136, Ferredoxin; Provisional	6e-67
TIGR02008	97	TIGR02008, fdx_plant, ferredoxin [2Fe-2S]	7e-61
CHL00134	99	CHL00134, petF, ferredoxin; Validated	7e-57
PTZ00038	191	PTZ00038, PTZ00038, ferredoxin; Provisional	7e-50
cd00207	84	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding	2e-33
COG0633	102	COG0633, Fdx, Ferredoxin [Energy production and co	1e-22
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	2e-22
pfam00111	77	pfam00111, Fer2, 2Fe-2S iron-sulfur cluster bindin	3e-21
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	1e-15
PRK05713	312	PRK05713, PRK05713, hypothetical protein; Provisio	5e-12
PRK10684	332	PRK10684, PRK10684, HCP oxidoreductase, NADH-depen	3e-09
PRK10713	84	PRK10713, PRK10713, 2Fe-2S ferredoxin YfaE; Provis	3e-07
PRK11872	340	PRK11872, antC, anthranilate dioxygenase reductase	3e-06
COG1034	693	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone	2e-04

>gnl|CDD|178681 PLN03136, PLN03136, Ferredoxin; Provisional

 Score =  199 bits (507), Expect = 6e-67
 Identities = 97/142 (68%), Positives = 122/142 (85%), Gaps = 3/142 (2%)

Query: 4   LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGE 60
           LSSA+VSTSF+R + T  SL+++P+   Q++FGLK++  RGGRV AMATYKVK ITP GE
Sbjct: 6   LSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGE 65

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
           +E+ C +D ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+Q+ EG+
Sbjct: 66  QEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGY 125

Query: 121 VLTCAAYPTSDVTIETHKEEEL 142
           VLTC AYPTSDV IETHKEE +
Sbjct: 126 VLTCVAYPTSDVVIETHKEEAI 147

Length = 148

>gnl|CDD|233684 TIGR02008, fdx_plant, ferredoxin [2Fe-2S]

 Score =  182 bits (463), Expect = 7e-61
 Identities = 76/97 (78%), Positives = 83/97 (85%), Gaps = 1/97 (1%)

Query: 48  ATYKVKLITP-GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
           ATYKV L+ P GGEE I CPDD +ILDAAEEAG+DLPYSCRAGACS+C GKV  GTVDQS
Sbjct: 1   ATYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQS 60

Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
           +QSFLDDDQM  G+VLTC AYPTSD TIETHKEE+L 
Sbjct: 61  DQSFLDDDQMEAGYVLTCVAYPTSDCTIETHKEEDLY 97

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins. Length = 97

>gnl|CDD|177056 CHL00134, petF, ferredoxin; Validated

 Score =  172 bits (437), Expect = 7e-57
 Identities = 71/98 (72%), Positives = 81/98 (82%), Gaps = 2/98 (2%)

Query: 47  MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVD 104
           MATYKV L++   G +  I+CPDD +ILDAAEE G+DLPYSCRAGACS+C GKV  GTVD
Sbjct: 1   MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVD 60

Query: 105 QSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QS+QSFLDDDQ+  GFVLTC AYPTSD TI TH+EEEL
Sbjct: 61  QSDQSFLDDDQLEAGFVLTCVAYPTSDCTILTHQEEEL 98

Length = 99

>gnl|CDD|240237 PTZ00038, PTZ00038, ferredoxin; Provisional

 Score =  157 bits (399), Expect = 7e-50
 Identities = 52/94 (55%), Positives = 69/94 (73%)

Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           Y + L TP GE+ I C +D +ILDAAE  G++LPYSCR G+CS+C  K++ G VD  +QS
Sbjct: 96  YNITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQS 155

Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
           +LDD+Q+ +G+ L C  YP SD TIETHKE+EL 
Sbjct: 156 YLDDEQLKKGYCLLCTCYPKSDCTIETHKEDELH 189

Length = 191

>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score =  112 bits (281), Expect = 2e-33
 Identities = 40/84 (47%), Positives = 54/84 (64%)

Query: 52  VKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFL 111
           V +  PG   E+  P+   +LDAA EAG+D+PYSCRAGAC +C  +VV G VDQS+ S L
Sbjct: 1   VTINVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLL 60

Query: 112 DDDQMGEGFVLTCAAYPTSDVTIE 135
           D+++   G+VL C    T  + IE
Sbjct: 61  DEEEAEGGYVLACQTRVTDGLVIE 84

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin. Length = 84

>gnl|CDD|223706 COG0633, Fdx, Ferredoxin [Energy production and conversion]

 Score = 85.2 bits (211), Expect = 1e-22
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 49  TYKVKLITPGGEE--EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV--- 103
             K+  +T  GE        +   +L+AAE  G+ + Y+CR GAC +C  KV+ G     
Sbjct: 1   MPKIAFVTIDGEGDVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVS 60

Query: 104 --DQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
             ++SE+  LD   +     L+C      D+ IE  +E E  
Sbjct: 61  PPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDIEVVEEPEYT 102

Length = 102

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 89.9 bits (224), Expect = 2e-22
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS- 106
            +++V L  P G +      D  ILDAA   G+ LPY C+ GAC SC G+++ G V+Q  
Sbjct: 1   MSFQVTL-QPSGRQ-FTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGP 58

Query: 107 -EQSFLDDDQMGEGFVLTCAAYPTSDVTIE 135
            + S L  ++   G  LTC A P SD+ +E
Sbjct: 59  HQASALSGEERAAGEALTCCAKPLSDLVLE 88

Length = 339

>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score = 81.0 bits (200), Expect = 3e-21
 Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 3/74 (4%)

Query: 58  GGEEEINCPDD-SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQM 116
           G    I  PD  + +LDAAEEAG+D+PYSCR G C +C  KV+ G V QS+QSFL+DD++
Sbjct: 5   GKGVTIEVPDGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEV-QSDQSFLEDDEL 63

Query: 117 GEGF-VLTCAAYPT 129
             G+ VL C  YP 
Sbjct: 64  AAGYVVLACQTYPK 77

Length = 77

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 60  EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEG 119
           E      D+S +LDAA  A  DLP++C+ G C +C  KV+ G VD      L+ D++  G
Sbjct: 275 ETSSLSRDES-VLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAG 333

Query: 120 FVLTCAAYP-TSDVTIE 135
           +VLTC AYP +  + ++
Sbjct: 334 YVLTCQAYPLSDKLVVD 350

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|235575 PRK05713, PRK05713, hypothetical protein; Provisional

 Score = 61.3 bits (149), Expect = 5e-12
 Identities = 25/78 (32%), Positives = 41/78 (52%)

Query: 59  GEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGE 118
           GE   + P  S +LDA   AG+ +PYSCRAG+C +C  + + G  + +    L  ++  +
Sbjct: 7   GERRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQ 66

Query: 119 GFVLTCAAYPTSDVTIET 136
           G+ L C      D+ +E 
Sbjct: 67  GWRLACQCRVVGDLRVEV 84

Length = 312

>gnl|CDD|236735 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 27/92 (29%), Positives = 42/92 (45%)

Query: 44  VVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV 103
           V   AT  +         E   P  + +L+A E   + +  +CRAG C  C  KVVSG  
Sbjct: 241 VAEAATSGLTFTKLQPAREFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEY 300

Query: 104 DQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIE 135
             S    L   ++ +G+VL C+ +P  D+ + 
Sbjct: 301 TVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA 332

Length = 332

>gnl|CDD|182668 PRK10713, PRK10713, 2Fe-2S ferredoxin YfaE; Provisional

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 8/77 (10%)

Query: 62  EINCPDDS-FILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQ--SFLDDDQMGE 118
           ++ C D+   +L A E   + + Y CR G C SC  ++V+G VD   +  +F+   Q GE
Sbjct: 12  QLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFI---QPGE 68

Query: 119 GFVLTCAAYPTSDVTIE 135
             +L C      D+ IE
Sbjct: 69  --ILPCCCRAKGDIEIE 83

Length = 84

>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 68  DSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEG-----FVL 122
           D  +LDAA   G++LP  CR G C +C G+  SG      Q ++D+D + E       +L
Sbjct: 22  DELLLDAALRNGINLPLDCREGVCGTCQGRCESG---IYSQDYVDEDALSERDLAQRKML 78

Query: 123 TCAAYPTSDVT 133
            C     SD  
Sbjct: 79  ACQTRVKSDAA 89

Length = 340

>gnl|CDD|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 6/39 (15%)

Query: 62 EINCPDDSFILDAAEEAGLDLPYSCR------AGACSSC 94
          EI  P+   +L AA EAG+D+P  C       AGAC  C
Sbjct: 10 EIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMC 48

Length = 693

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PLN03136	148	Ferredoxin; Provisional	99.96
CHL00134	99	petF ferredoxin; Validated	99.94
TIGR02008	97	fdx_plant ferredoxin [2Fe-2S]. This model represen	99.94
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.93
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.92
PTZ00038	191	ferredoxin; Provisional	99.91
PRK10713	84	2Fe-2S ferredoxin YfaE; Provisional	99.9
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.84
cd00207	84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	99.82
COG0633	102	Fdx Ferredoxin [Energy production and conversion]	99.81
PLN02593	117	adrenodoxin-like ferredoxin protein	99.81
PRK05713	312	hypothetical protein; Provisional	99.81
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.81
TIGR02007	110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	99.8
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.79
PTZ00490	143	Ferredoxin superfamily; Provisional	99.78
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.75
PF00111	78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	99.75
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.71
COG3894	614	Uncharacterized metal-binding protein [General fun	99.56
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	99.3
PF13510	82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	99.25
KOG3309	159	consensus Ferredoxin [Energy production and conver	99.18
PRK08166	847	NADH dehydrogenase subunit G; Validated	99.11
PTZ00305	297	NADH:ubiquinone oxidoreductase; Provisional	98.88
PRK06259	486	succinate dehydrogenase/fumarate reductase iron-su	98.81
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.73
COG1034	693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	98.68
PRK09130	687	NADH dehydrogenase subunit G; Validated	98.67
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	98.56
PRK09129	776	NADH dehydrogenase subunit G; Validated	98.52
PRK08493	819	NADH dehydrogenase subunit G; Validated	98.49
PRK07860	797	NADH dehydrogenase subunit G; Validated	98.45
PF13085	110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	98.37
PRK08640	249	sdhB succinate dehydrogenase iron-sulfur subunit;	98.25
PRK13552	239	frdB fumarate reductase iron-sulfur subunit; Provi	98.24
PRK11433	217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	98.18
PRK12386	251	fumarate reductase iron-sulfur subunit; Provisiona	98.17
PRK12385	244	fumarate reductase iron-sulfur subunit; Provisiona	98.11
PRK12577	329	succinate dehydrogenase iron-sulfur subunit; Provi	98.08
PRK09908	159	xanthine dehydrogenase subunit XdhC; Provisional	98.05
COG3383	978	Uncharacterized anaerobic dehydrogenase [General f	98.04
TIGR00384	220	dhsB succinate dehydrogenase and fumarate reductas	97.95
PRK07570	250	succinate dehydrogenase/fumarate reductase iron-su	97.94
PLN00129	276	succinate dehydrogenase [ubiquinone] iron-sulfur s	97.83
TIGR03193	148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	97.82
PRK12575	235	succinate dehydrogenase iron-sulfur subunit; Provi	97.82
PRK12576	279	succinate dehydrogenase iron-sulfur subunit; Provi	97.81
PRK05950	232	sdhB succinate dehydrogenase iron-sulfur subunit;	97.79
COG0479	234	FrdB Succinate dehydrogenase/fumarate reductase, F	97.78
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	97.69
TIGR03198	151	pucE xanthine dehydrogenase E subunit. This gene h	97.42
COG2080	156	CoxS Aerobic-type carbon monoxide dehydrogenase, s	97.3
TIGR02963	467	xanthine_xdhA xanthine dehydrogenase, small subuni	96.8
TIGR03311	848	Se_dep_Molyb_1 selenium-dependent molybdenum hydro	96.69
PRK09800	956	putative hypoxanthine oxidase; Provisional	96.6
KOG2282	708	consensus NADH-ubiquinone oxidoreductase, NDUFS1/7	96.46
PLN00192	1344	aldehyde oxidase	95.95
TIGR03313	951	Se_sel_red_Mo probable selenate reductase, molybde	95.72
TIGR02969	1330	mam_aldehyde_ox aldehyde oxidase. Members of this	95.5
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.19
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	95.14
KOG3049	288	consensus Succinate dehydrogenase, Fe-S protein su	94.66
COG4630	493	XdhA Xanthine dehydrogenase, iron-sulfur cluster a	92.15
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	88.85
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	87.8
PLN02906	1319	xanthine dehydrogenase	86.81
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	86.7
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	84.18
KOG0430	1257	consensus Xanthine dehydrogenase [Nucleotide trans	83.96
PF10418	40	DHODB_Fe-S_bind: Iron-sulfur cluster binding domai	81.08
PRK05659	66	sulfur carrier protein ThiS; Validated	80.01

>PLN03136 Ferredoxin; Provisional

Probab=99.96  E-value=1.4e-29  Score=186.68  Aligned_cols=140  Identities=69%  Similarity=1.168  Sum_probs=118.1

Q ss_pred             ccccccchHHHhcCCcccccCCCCCce-eeeccCCc--CCCCccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCC
Q 032269            4 LSSAMVSTSFIRSKPTATSLKAMPNMG-QAIFGLKA--NRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGL   80 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~e~F~~~~--~~~~~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi   80 (144)
                      +.++....+|+++.+..+++++..... .-+||...  .+.++.+.|..++|+|+.+++.++|++++|++|||+++++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~V~l~~~~~~~~~~~~~g~tILdAa~~~Gi   85 (148)
T PLN03136          6 LSSAIVSTSFLRRQQTPISLRSLPSANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGI   85 (148)
T ss_pred             hhhhhhhhhcccccccccccccccccccccccccccccccCcccceeeeEEEEEecCCCcEEEEeCCCCcHHHHHHHcCC
Confidence            466666677887777666665543332 45788887  445677888889999965666458999999999999999999


Q ss_pred             CCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEEEcCCccccc
Q 032269           81 DLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA  143 (144)
Q Consensus        81 ~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~~~~~~~~~  143 (144)
                      ++||+|+.|.||+|+++|++|.+++.+...|++++.++||+|+||++|.+|++|+++.+++|.
T Consensus        86 ~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~sD~~Ie~~~e~~l~  148 (148)
T PLN03136         86 DLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAIM  148 (148)
T ss_pred             CCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECCCcEEecCChhhcC
Confidence            999999999999999999999999887778999999999999999999999999999998873

>CHL00134 petF ferredoxin; Validated

Probab=99.94  E-value=1.5e-26  Score=160.28  Aligned_cols=97  Identities=73%  Similarity=1.213  Sum_probs=86.4

Q ss_pred             ccceEEEEEcC-CC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEee
Q 032269           47 MATYKVKLITP-GG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTC  124 (144)
Q Consensus        47 m~~~~V~i~~~-~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaC  124 (144)
                      |+.++|+|..+ ++ .+.|++++|+|||++++++||++|++|+.|.||+|++++++|++.+.+...|+++++++||+|+|
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C   80 (99)
T CHL00134          1 MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTC   80 (99)
T ss_pred             CCeEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEe
Confidence            56789999431 33 34799999999999999999999999999999999999999999887666788888999999999


Q ss_pred             eceECCCeEEEcCCccccc
Q 032269          125 AAYPTSDVTIETHKEEELA  143 (144)
Q Consensus       125 q~~~~~dl~I~~~~~~~~~  143 (144)
                      |++|.+|++|++++++++|
T Consensus        81 ~~~~~~d~~i~~~~~~~~~   99 (99)
T CHL00134         81 VAYPTSDCTILTHQEEELY   99 (99)
T ss_pred             eCEECCCeEEEeccccccC
Confidence            9999999999999998876

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]

Probab=99.94  E-value=3e-26  Score=158.02  Aligned_cols=95  Identities=78%  Similarity=1.292  Sum_probs=85.3

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeece
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAY  127 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~  127 (144)
                      .++|+|+.+++ .+.|.+++|+|||++++++|+++|++|++|.||+|+++|++|.+++.+...|+++++++|++|+||++
T Consensus         2 ~~~v~~~~~~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~   81 (97)
T TIGR02008         2 TYKVTLVNPDGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAY   81 (97)
T ss_pred             eEEEEEEECCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCE
Confidence            36788854555 34899999999999999999999999999999999999999999876666688888999999999999


Q ss_pred             ECCCeEEEcCCccccc
Q 032269          128 PTSDVTIETHKEEELA  143 (144)
Q Consensus       128 ~~~dl~I~~~~~~~~~  143 (144)
                      +.+|++|++++++++|
T Consensus        82 ~~~di~v~~~~~~~~~   97 (97)
T TIGR02008        82 PTSDCTIETHKEEDLY   97 (97)
T ss_pred             ECCCeEEEeccccccC
Confidence            9999999999998876

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.93  E-value=2.3e-26  Score=188.04  Aligned_cols=125  Identities=22%  Similarity=0.381  Sum_probs=108.5

Q ss_pred             ccccccchHHHhcCCcccccCCCCCceeeeccCCcCCCCccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCC
Q 032269            4 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~~~~~~~~~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~   83 (144)
                      +|||..|+..+.+.+...+.+. ++||+|.|+.+....    ....++|++ ...++ ++++++|+|||++++++|++++
T Consensus       208 iCGP~~m~~~v~~~l~~~Gv~~-~~i~~E~F~~~~~~~----~~~~~~v~~-~~~~~-~~~~~~~~~lL~~~~~~gi~~~  280 (332)
T PRK10684        208 TCGPAPYMDWVEQEVKALGVTA-DRFFKEKFFTPVAEA----ATSGLTFTK-LQPAR-EFYAPVGTTLLEALESNKVPVV  280 (332)
T ss_pred             EECCHHHHHHHHHHHHHcCCCH-HHeEeeccCCCCCCc----CCCceEEEE-ecCCE-EEEeCCCChHHHHHHHcCCCcc
Confidence            7999999999999998877777 999999998653111    123577888 44554 7999999999999999999999


Q ss_pred             CCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEEE
Q 032269           84 YSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIE  135 (144)
Q Consensus        84 ~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~  135 (144)
                      ++|+.|.||+|++++++|++.+.....|+++++++|++|+||++|.+|++|+
T Consensus       281 ~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~d~~i~  332 (332)
T PRK10684        281 AACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA  332 (332)
T ss_pred             CCCCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCEECCCeEEC
Confidence            9999999999999999999998766779999999999999999999998873

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.92  E-value=2.8e-25  Score=182.48  Aligned_cols=132  Identities=30%  Similarity=0.490  Sum_probs=107.5

Q ss_pred             cccccccchHHHhcCCcccccCCCCCceeeeccCCcCCC--Ccc----ccccceEEEEEcCCCe-EE-EEcCCchhHHHH
Q 032269            3 TLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRG--GRV----VAMATYKVKLITPGGE-EE-INCPDDSFILDA   74 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~~~~~~~--~~~----~~m~~~~V~i~~~~g~-~~-i~v~~g~tLL~a   74 (144)
                      -+|||..|+..+++.+...+.+. .+||+|.|+.+..+.  .+.    .....++|+|. .+|. .. +.+++|+|||++
T Consensus       211 yiCGp~~m~~~v~~~L~~~Gv~~-~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~slL~~  288 (352)
T TIGR02160       211 FLCGPQAMVDDAEQALTGLGVPA-GRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVT-LDGRSTETSSLSRDESVLDA  288 (352)
T ss_pred             EEECCHHHHHHHHHHHHHcCCCH-HHEEEEeccCCCCCcccccccccccCCCceEEEEE-ECCceEEEEecCCCCcHHHH
Confidence            37999999999999999877777 999999998732111  000    11234678884 4553 22 578999999999


Q ss_pred             HHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC-eEEEc
Q 032269           75 AEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD-VTIET  136 (144)
Q Consensus        75 ~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d-l~I~~  136 (144)
                      ++++|++++++|+.|.||+|++++++|++.+.+...|++++.++|++|+||++|.+| ++|++
T Consensus       289 ~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~~~~~~~~  351 (352)
T TIGR02160       289 ALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLVVDY  351 (352)
T ss_pred             HHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEEECCCcEEEec
Confidence            999999999999999999999999999999877667898899999999999999987 87764

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PTZ00038 ferredoxin; Provisional

Probab=99.91  E-value=1.7e-24  Score=165.11  Aligned_cols=96  Identities=54%  Similarity=1.061  Sum_probs=87.6

Q ss_pred             cceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeece
Q 032269           48 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAY  127 (144)
Q Consensus        48 ~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~  127 (144)
                      ..++|+|..+++.+++++++|+||||+++++||++|++|+.|.||+|+++|++|++.+.+...|+++++++||+|+||++
T Consensus        94 ~~~~Vt~~~~~g~~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~  173 (191)
T PTZ00038         94 LFYNITLQTPDGEKVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCY  173 (191)
T ss_pred             ceEEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCE
Confidence            35889985465545899999999999999999999999999999999999999999988877899999999999999999


Q ss_pred             ECCCeEEEcCCccccc
Q 032269          128 PTSDVTIETHKEEELA  143 (144)
Q Consensus       128 ~~~dl~I~~~~~~~~~  143 (144)
                      |.+|++|+++++++++
T Consensus       174 p~sDi~Ie~p~e~~~~  189 (191)
T PTZ00038        174 PKSDCTIETHKEDELH  189 (191)
T ss_pred             ECCCeEEecCChHHhc
Confidence            9999999999988764

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional

Probab=99.90  E-value=1.7e-23  Score=140.90  Aligned_cols=82  Identities=30%  Similarity=0.588  Sum_probs=70.0

Q ss_pred             eEEEEEcCCCeEEEEcCC-chhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269           50 YKVKLITPGGEEEINCPD-DSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP  128 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~-g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  128 (144)
                      ++|+| .+++. .|.+++ ++|||++++++|+++||+|++|.||+|++++++|++++.+..   ..+.++|++|+||++|
T Consensus         2 ~~v~~-~~~~~-~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~~p   76 (84)
T PRK10713          2 ARVTL-RITGT-QLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCCRA   76 (84)
T ss_pred             CEEEE-EeCCc-EEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeCEE
Confidence            57777 55664 799986 599999999999999999999999999999999999875432   2356789999999999


Q ss_pred             CCCeEEEc
Q 032269          129 TSDVTIET  136 (144)
Q Consensus       129 ~~dl~I~~  136 (144)
                      .+|++|++
T Consensus        77 ~sd~~ie~   84 (84)
T PRK10713         77 KGDIEIEM   84 (84)
T ss_pred             CCCEEEeC
Confidence            99999874

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.84  E-value=8.9e-21  Score=155.12  Aligned_cols=90  Identities=39%  Similarity=0.772  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCC--cCCCCCccccCCCeEEeeece
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS--EQSFLDDDQMGEGFVLTCAAY  127 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLaCq~~  127 (144)
                      ++|+| .++++ ++++++|+|||++++++|++++++|+.|.||+|++++++|++++.  +...|++++.++|++|+||++
T Consensus         3 ~~v~~-~~~~~-~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~   80 (339)
T PRK07609          3 FQVTL-QPSGR-QFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAK   80 (339)
T ss_pred             EEEEE-ecCCe-EEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCE
Confidence            57888 56664 799999999999999999999999999999999999999999875  556788888999999999999


Q ss_pred             ECCCeEEEcCCccc
Q 032269          128 PTSDVTIETHKEEE  141 (144)
Q Consensus       128 ~~~dl~I~~~~~~~  141 (144)
                      +.+|++|+++...+
T Consensus        81 ~~~d~~i~~~~~~~   94 (339)
T PRK07609         81 PLSDLVLEAREVPA   94 (339)
T ss_pred             ECCCEEEEeccccc
Confidence            99999999887654

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain

Probab=99.82  E-value=4.8e-20  Score=122.29  Aligned_cols=75  Identities=49%  Similarity=0.928  Sum_probs=68.8

Q ss_pred             EEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEEE
Q 032269           61 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIE  135 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~  135 (144)
                      +++.+++|+|||++++++|+++++.|+.|.||+|+++|.+|.+.+.....++..+..+++||+||+++.+|++|+
T Consensus        10 ~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~   84 (84)
T cd00207          10 VEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE   84 (84)
T ss_pred             EEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence            589999999999999999999999999999999999999999987766667777788999999999999999874

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.

>COG0633 Fdx Ferredoxin [Energy production and conversion]

Probab=99.81  E-value=5.6e-20  Score=127.99  Aligned_cols=81  Identities=31%  Similarity=0.594  Sum_probs=64.6

Q ss_pred             eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeC--cccCCc---CCCCCccccCCCeEEeeeceECCCeEE
Q 032269           60 EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSG--TVDQSE---QSFLDDDQMGEGFVLTCAAYPTSDVTI  134 (144)
Q Consensus        60 ~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G--~~~~~e---~~~L~~~~~~~g~rLaCq~~~~~dl~I  134 (144)
                      ...+.++.|+|||++++++||+++|+|+.|.||+|+|+|++|  .+...+   ...|.+.....++||+||+++.+|+.+
T Consensus        14 ~~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~~i   93 (102)
T COG0633          14 DVTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDI   93 (102)
T ss_pred             ceEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCcce
Confidence            335666679999999999999999999999999999999999  555432   223443456677999999999999887


Q ss_pred             EcCCcc
Q 032269          135 ETHKEE  140 (144)
Q Consensus       135 ~~~~~~  140 (144)
                      ++....
T Consensus        94 ~~~~~~   99 (102)
T COG0633          94 EVVEEP   99 (102)
T ss_pred             EEEecc
Confidence            655443

>PLN02593 adrenodoxin-like ferredoxin protein

Probab=99.81  E-value=6.7e-20  Score=130.51  Aligned_cols=91  Identities=24%  Similarity=0.405  Sum_probs=73.6

Q ss_pred             eEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCccc-------CCcCCCCC-ccccCCC
Q 032269           50 YKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVD-------QSEQSFLD-DDQMGEG  119 (144)
Q Consensus        50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~-------~~e~~~L~-~~~~~~g  119 (144)
                      ++|+|+.++| ++++++++|+|||++++++|+++++.|+ .|.||+|+|+|+++...       ..|...|+ ..+..++
T Consensus         1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~   80 (117)
T PLN02593          1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET   80 (117)
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence            3688866777 4679999999999999999999999999 79999999999654321       12344566 4567789


Q ss_pred             eEEeeeceECC---CeEEEcCCcc
Q 032269          120 FVLTCAAYPTS---DVTIETHKEE  140 (144)
Q Consensus       120 ~rLaCq~~~~~---dl~I~~~~~~  140 (144)
                      +|||||+.+.+   |++|++|++.
T Consensus        81 sRLaCQ~~v~~~~~~~~v~ip~~~  104 (117)
T PLN02593         81 SRLGCQVIAKPELDGMRLALPAAT  104 (117)
T ss_pred             eEecceeEeecCCCCEEEEcCchh
Confidence            99999999984   6899998865

>PRK05713 hypothetical protein; Provisional

Probab=99.81  E-value=7.9e-20  Score=148.43  Aligned_cols=80  Identities=30%  Similarity=0.633  Sum_probs=73.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEEEcC
Q 032269           58 GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETH  137 (144)
Q Consensus        58 ~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I~~~  137 (144)
                      +++ +|++++|+|||++++++||.++++|++|.||+|++++++|++.......|+++++++|+||+||+++.+|++|+++
T Consensus         7 ~~~-~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~   85 (312)
T PRK05713          7 GER-RWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEVF   85 (312)
T ss_pred             CCe-EEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEEec
Confidence            564 7999999999999999999999999999999999999999987655567888889999999999999999999976


Q ss_pred             C
Q 032269          138 K  138 (144)
Q Consensus       138 ~  138 (144)
                      +
T Consensus        86 ~   86 (312)
T PRK05713         86 D   86 (312)
T ss_pred             C
Confidence            3

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.81  E-value=1.6e-19  Score=148.33  Aligned_cols=91  Identities=29%  Similarity=0.518  Sum_probs=76.6

Q ss_pred             eEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccC--CcCCCCCccccCCCeEEeeec
Q 032269           50 YKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ--SEQSFLDDDQMGEGFVLTCAA  126 (144)
Q Consensus        50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq~  126 (144)
                      ++|+|..+++ ...+++++|+|||++++++|+.+|++|+.|.||+|+++|++|+++.  .+...|++++.++|++|+||+
T Consensus         3 ~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~   82 (340)
T PRK11872          3 HKVALSFADGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQT   82 (340)
T ss_pred             eEEEEEecCCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeC
Confidence            4555532334 3458899999999999999999999999999999999999999874  344568888889999999999


Q ss_pred             eECCCeEEEcCCcc
Q 032269          127 YPTSDVTIETHKEE  140 (144)
Q Consensus       127 ~~~~dl~I~~~~~~  140 (144)
                      ++.+|++|+++.+.
T Consensus        83 ~~~~d~~i~~~~~~   96 (340)
T PRK11872         83 RVKSDAAFYFDFDS   96 (340)
T ss_pred             EECCceEEEecCcc
Confidence            99999999987543

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system

Probab=99.80  E-value=1.7e-19  Score=126.98  Aligned_cols=85  Identities=26%  Similarity=0.449  Sum_probs=68.9

Q ss_pred             cCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCCcC-----CCCCcc-ccCCCeEEeeeceE
Q 032269           56 TPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQSEQ-----SFLDDD-QMGEGFVLTCAAYP  128 (144)
Q Consensus        56 ~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~-----~~L~~~-~~~~g~rLaCq~~~  128 (144)
                      .+.+. ++++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|.......     ..|+.. +..+++||+||+++
T Consensus        12 ~p~~~-~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~   90 (110)
T TIGR02007        12 CPEGA-VVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVV   90 (110)
T ss_pred             CCCCe-EEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEE
Confidence            46664 79999999999999999999999999 799999999999996543322     223322 45678999999998


Q ss_pred             C-CCeEEEcCCccc
Q 032269          129 T-SDVTIETHKEEE  141 (144)
Q Consensus       129 ~-~dl~I~~~~~~~  141 (144)
                      . +|++|+++....
T Consensus        91 ~~~dl~v~~~~~~~  104 (110)
T TIGR02007        91 ADEDLVVEIPKYTI  104 (110)
T ss_pred             cCCCEEEEECchhh
Confidence            7 699999987543

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.79  E-value=3.6e-19  Score=149.40  Aligned_cols=92  Identities=23%  Similarity=0.458  Sum_probs=78.5

Q ss_pred             ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC--cCCCCCccccCCCeEE
Q 032269           47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS--EQSFLDDDQMGEGFVL  122 (144)
Q Consensus        47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rL  122 (144)
                      |++++|+|+.+++ .+++.+++|+|||++++++|+++++.|+ .|.||+|+|++++|.+...  +...|++++.++|+||
T Consensus        27 ~~~~~v~v~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rL  106 (405)
T TIGR01941        27 VSSGDITIGINDDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL  106 (405)
T ss_pred             cccccEEEEEcCCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEE
Confidence            5566666654443 3589999999999999999999999999 6999999999999987643  4457888889999999


Q ss_pred             eeeceECCCeEEEcCC
Q 032269          123 TCAAYPTSDVTIETHK  138 (144)
Q Consensus       123 aCq~~~~~dl~I~~~~  138 (144)
                      +||+.+.+|++|+++.
T Consensus       107 aCq~~~~~d~~i~~~~  122 (405)
T TIGR01941       107 SCQVKVKQDMSIEIPE  122 (405)
T ss_pred             EeeCEECCCEEEEECc
Confidence            9999999999999874

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PTZ00490 Ferredoxin superfamily; Provisional

Probab=99.78  E-value=9e-19  Score=128.49  Aligned_cols=92  Identities=18%  Similarity=0.324  Sum_probs=77.2

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CCCCCCCCC-CcccccCEEEEeeCcccC------CcCCCCCcc-ccCC
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEA-GLDLPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDDD-QMGE  118 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi~i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~~-~~~~  118 (144)
                      .++|+|+.++| ++++++++|+|||+++.++ +++|++.|+ .|.||+|+|+|.+|..+.      .|...|+.. +..+
T Consensus        35 ~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~  114 (143)
T PTZ00490         35 KVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE  114 (143)
T ss_pred             cEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCC
Confidence            58899987777 4689999999999999995 799999999 999999999999875432      244567765 7889


Q ss_pred             CeEEeeeceECC---CeEEEcCCcc
Q 032269          119 GFVLTCAAYPTS---DVTIETHKEE  140 (144)
Q Consensus       119 g~rLaCq~~~~~---dl~I~~~~~~  140 (144)
                      ++||+||..+..   +++|++++..
T Consensus       115 gsRLaCQi~v~~~ldgl~V~vp~~~  139 (143)
T PTZ00490        115 TSRLACQVDLTPEMDGLEVELPSYV  139 (143)
T ss_pred             CcEEeeeEEEecCCCCEEEEeCccc
Confidence            999999999986   4699998764

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.75  E-value=5.6e-18  Score=142.35  Aligned_cols=89  Identities=28%  Similarity=0.485  Sum_probs=75.6

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC--cCCCCCccccCCCeEEeee
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS--EQSFLDDDQMGEGFVLTCA  125 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLaCq  125 (144)
                      .++|++ .++..+++++++|+|||++++++|+++++.|+ +|.||+|+|++++|.+...  +...|++++.++|+||+||
T Consensus        35 ~~~i~~-~~~~~~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq  113 (409)
T PRK05464         35 DVTIKI-NGDPEKTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQ  113 (409)
T ss_pred             cEEEEE-cCCCcEEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEee
Confidence            356666 33212589999999999999999999999999 6999999999999987643  4556888888999999999


Q ss_pred             ceECCCeEEEcCC
Q 032269          126 AYPTSDVTIETHK  138 (144)
Q Consensus       126 ~~~~~dl~I~~~~  138 (144)
                      +++.+|++|+++.
T Consensus       114 ~~~~~d~~ie~~~  126 (409)
T PRK05464        114 VKVKQDMKIEVPE  126 (409)
T ss_pred             CEECCCEEEEECc
Confidence            9999999999874

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions

Probab=99.75  E-value=1.4e-18  Score=114.37  Aligned_cols=69  Identities=39%  Similarity=0.803  Sum_probs=58.5

Q ss_pred             eEEEEcCCchh-HHHHHHHc-CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCe-EEeeeceEC
Q 032269           60 EEEINCPDDSF-ILDAAEEA-GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF-VLTCAAYPT  129 (144)
Q Consensus        60 ~~~i~v~~g~t-LL~a~~~~-Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~-rLaCq~~~~  129 (144)
                      .++|++++|+| ||++++++ |++++++|+.|.||+|+|+|++|++ +.....+++++.++++ ||+||++|+
T Consensus         7 ~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t   78 (78)
T PF00111_consen    7 GVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT   78 (78)
T ss_dssp             EEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred             EEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence            35799999999 99999999 9999999998889999999999998 4335556666666665 799999885

Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.71  E-value=1.5e-17  Score=133.83  Aligned_cols=93  Identities=24%  Similarity=0.486  Sum_probs=80.0

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCccc--CCcCCCCCccccCCCeEEeee
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVD--QSEQSFLDDDQMGEGFVLTCA  125 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~--~~e~~~L~~~~~~~g~rLaCq  125 (144)
                      ..+|+| +.+..+++++++|.+||.++..+||.|++.|+ .|.||.|+|+|++|.-+  ..|...++..+.++|+||+||
T Consensus        36 d~ti~I-N~d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ  114 (410)
T COG2871          36 DITIKI-NGDPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQ  114 (410)
T ss_pred             ceEEEe-CCChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEE
Confidence            467788 44445689999999999999999999999999 99999999999998655  356677888899999999999


Q ss_pred             ceECCCeEEEcCCcccccC
Q 032269          126 AYPTSDVTIETHKEEELAG  144 (144)
Q Consensus       126 ~~~~~dl~I~~~~~~~~~~  144 (144)
                      +.++.||.|++++  ++||
T Consensus       115 ~~Vk~dm~levpE--e~fg  131 (410)
T COG2871         115 VNVKHDMDLEVPE--EVFG  131 (410)
T ss_pred             ecccccceeechH--HhcC
Confidence            9999999999976  4554

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=99.56  E-value=2.5e-15  Score=127.76  Aligned_cols=89  Identities=26%  Similarity=0.411  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC-cCCCCCccccCCCeEEeeece
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS-EQSFLDDDQMGEGFVLTCAAY  127 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~-e~~~L~~~~~~~g~rLaCq~~  127 (144)
                      +-|+| .|.|+ ..+ ++|+|||+++++.|+.|.+.|+ +|.||+|+|.|.+|..... +..+ ....+..||||+||++
T Consensus         2 p~v~f-~psgk-r~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh-~k~~~~~g~rlac~~~   77 (614)
T COG3894           2 PLVTF-MPSGK-RGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDH-EKYLRERGYRLACQAQ   77 (614)
T ss_pred             ceeEe-ecCCC-cCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhH-HHHHHhhceeeeeehh
Confidence            46888 78896 577 9999999999999999999999 9999999999999985432 1111 1123445999999999


Q ss_pred             ECCCeEEEcCCcccc
Q 032269          128 PTSDVTIETHKEEEL  142 (144)
Q Consensus       128 ~~~dl~I~~~~~~~~  142 (144)
                      +.+|++|.+|++..+
T Consensus        78 v~gd~~i~ip~es~l   92 (614)
T COG3894          78 VLGDLVIFIPPESRL   92 (614)
T ss_pred             hcCceEEEcCchhhH
Confidence            999999999987654

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=99.30  E-value=6.9e-12  Score=98.65  Aligned_cols=73  Identities=22%  Similarity=0.535  Sum_probs=62.5

Q ss_pred             ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCe
Q 032269           47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF  120 (144)
Q Consensus        47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~  120 (144)
                      |++++|+|   +|+ .|++++|+|||+|++++|+.||+.|.      .|.|+.|+|+| +|.               .+.
T Consensus         1 m~~v~i~i---dg~-~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~~   60 (234)
T PRK07569          1 MSVKTLTI---DDQ-LVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NKL   60 (234)
T ss_pred             CceEEEEE---CCE-EEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------Ccc
Confidence            55677887   675 69999999999999999999999998      89999999999 331               245


Q ss_pred             EEeeeceECCCeEEEcCCc
Q 032269          121 VLTCAAYPTSDVTIETHKE  139 (144)
Q Consensus       121 rLaCq~~~~~dl~I~~~~~  139 (144)
                      +.||++.+..+|+|.+..+
T Consensus        61 ~~aC~t~v~~Gm~v~t~~~   79 (234)
T PRK07569         61 LPACVTPVAEGMVVQTNTP   79 (234)
T ss_pred             ccCcCCCCCCCCEEEECCH
Confidence            6799999999999998765

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.25  E-value=8.9e-12  Score=83.41  Aligned_cols=69  Identities=29%  Similarity=0.559  Sum_probs=47.8

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCC----------cccccCEEEEeeCcccCCcCCCCCccccCC
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRA----------GACSSCTGKVVSGTVDQSEQSFLDDDQMGE  118 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~----------G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~  118 (144)
                      +++|+|   +|+ .+++++|+|||+|++++|+.||+.|..          |.|+.|.|+|- |                .
T Consensus         3 ~v~i~i---dG~-~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~   61 (82)
T PF13510_consen    3 MVTITI---DGK-PVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------E   61 (82)
T ss_dssp             EEEEEE---TTE-EEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------E
T ss_pred             EEEEEE---CCE-EEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------C
Confidence            466777   675 799999999999999999999998886          99999999992 1                1


Q ss_pred             CeEEeeeceECCCeEEEcCC
Q 032269          119 GFVLTCAAYPTSDVTIETHK  138 (144)
Q Consensus       119 g~rLaCq~~~~~dl~I~~~~  138 (144)
                      ..+.||++.+..+|.|+..+
T Consensus        62 ~~v~AC~t~v~~GM~V~T~s   81 (82)
T PF13510_consen   62 PNVRACSTPVEDGMVVETQS   81 (82)
T ss_dssp             EEEETTT-B--TTEEEE---
T ss_pred             cceEcccCCCcCCcEEEEeE
Confidence            23799999999999998754

>KOG3309 consensus Ferredoxin [Energy production and conversion]

Probab=99.18  E-value=7.1e-11  Score=86.88  Aligned_cols=92  Identities=28%  Similarity=0.415  Sum_probs=73.0

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC------cCCCCC-ccccCCC
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS------EQSFLD-DDQMGEG  119 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~-~~~~~~g  119 (144)
                      .++|+|+.++| ++.+....|+|||+++.++||+++..|. .-.|.+|+|.|..-.++..      |...|. .-.+.+.
T Consensus        43 ~i~Itfv~~dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~t  122 (159)
T KOG3309|consen   43 DIKITFVDPDGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTET  122 (159)
T ss_pred             eEEEEEECCCCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccc
Confidence            48999999998 4568889999999999999999999999 8899999999976654421      223333 1236678


Q ss_pred             eEEeeeceECCC---eEEEcCCcc
Q 032269          120 FVLTCAAYPTSD---VTIETHKEE  140 (144)
Q Consensus       120 ~rLaCq~~~~~d---l~I~~~~~~  140 (144)
                      .||.||.....+   ++|.+|+.-
T Consensus       123 SRLGCQI~l~keldG~~v~vP~at  146 (159)
T KOG3309|consen  123 SRLGCQIVLTKELDGMRVAVPEAT  146 (159)
T ss_pred             cccceEEEeccccCCcEEECcccc
Confidence            999999998765   789888743

>PRK08166 NADH dehydrogenase subunit G; Validated

Probab=99.11  E-value=1.4e-10  Score=105.42  Aligned_cols=75  Identities=24%  Similarity=0.485  Sum_probs=64.5

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT  123 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa  123 (144)
                      .+|+|   +|+ .+++++|+|||+|++++||.||+.|.      .|.|+.|+|+|.+|..           +...+++++
T Consensus         2 ~~i~i---dg~-~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~-----------~~~~~~~~a   66 (847)
T PRK08166          2 ATIHV---DGK-EYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE-----------DTRGRLVMS   66 (847)
T ss_pred             eEEEE---CCE-EEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc-----------cCCCCcccC
Confidence            57777   575 79999999999999999999999998      6999999999998843           123468999


Q ss_pred             eeceECCCeEEEcCCc
Q 032269          124 CAAYPTSDVTIETHKE  139 (144)
Q Consensus       124 Cq~~~~~dl~I~~~~~  139 (144)
                      |++.+..+|+|++..+
T Consensus        67 C~~~v~~gm~v~t~~~   82 (847)
T PRK08166         67 CMTPATDGTFISIDDP   82 (847)
T ss_pred             cCCCCCCCCEEEeCCH
Confidence            9999999999998764

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional

Probab=98.88  E-value=4.7e-09  Score=84.91  Aligned_cols=72  Identities=25%  Similarity=0.526  Sum_probs=60.1

Q ss_pred             cceEEEEEcCCCeEEEEc-CCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCe
Q 032269           48 ATYKVKLITPGGEEEINC-PDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF  120 (144)
Q Consensus        48 ~~~~V~i~~~~g~~~i~v-~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~  120 (144)
                      +.++|+|   ||+ ++++ ++|+|||+|++++||.||+.|.      .|.|+.|.|+| +|.               .+.
T Consensus        67 ~~~~I~I---DGk-~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~l  126 (297)
T PTZ00305         67 PRAIMFV---NKR-PVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNL  126 (297)
T ss_pred             CceEEEE---CCE-EEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCc
Confidence            3467777   675 8999 9999999999999999999997      48899999998 322               245


Q ss_pred             EEeeeceECCCeEEEcCCc
Q 032269          121 VLTCAAYPTSDVTIETHKE  139 (144)
Q Consensus       121 rLaCq~~~~~dl~I~~~~~  139 (144)
                      .-||.+.+...|+|.+.++
T Consensus       127 v~AC~tpV~eGM~V~T~Se  145 (297)
T PTZ00305        127 VVSCATVALPGMSIITDSR  145 (297)
T ss_pred             ccccCCcCCCCCEEEeCCH
Confidence            7799999999999998764

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

Probab=98.81  E-value=1.2e-08  Score=87.67  Aligned_cols=60  Identities=33%  Similarity=0.556  Sum_probs=51.0

Q ss_pred             EEEEcCCchhHHHHHHH------cCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCCeEE
Q 032269           61 EEINCPDDSFILDAAEE------AGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTI  134 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~dl~I  134 (144)
                      .++++++|+|||+++++      .++.++++|+.|.||+|.+++ +|.                 .+|+|++.+.++++|
T Consensus        23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i   84 (486)
T PRK06259         23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMII   84 (486)
T ss_pred             EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEE
Confidence            35667799999999995      667789999999999999996 654                 478999999999999


Q ss_pred             EcCC
Q 032269          135 ETHK  138 (144)
Q Consensus       135 ~~~~  138 (144)
                      +...
T Consensus        85 ~~~~   88 (486)
T PRK06259         85 EPLD   88 (486)
T ss_pred             EecC
Confidence            8764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.73  E-value=2.4e-08  Score=88.72  Aligned_cols=73  Identities=29%  Similarity=0.590  Sum_probs=61.5

Q ss_pred             ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCe
Q 032269           47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF  120 (144)
Q Consensus        47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~  120 (144)
                      |++++|+|   +|+ ++++++|+|||++++++|+.||..|.      .|.|+.|.|++ +|.               .+.
T Consensus         1 ~~~v~~~i---dg~-~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~~   60 (652)
T PRK12814          1 MNTISLTI---NGR-SVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NRF   60 (652)
T ss_pred             CCeEEEEE---CCE-EEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cce
Confidence            45678888   675 89999999999999999999999997      69999999988 221               135


Q ss_pred             EEeeeceECCCeEEEcCCc
Q 032269          121 VLTCAAYPTSDVTIETHKE  139 (144)
Q Consensus       121 rLaCq~~~~~dl~I~~~~~  139 (144)
                      .+||++.+..+|.|.+.++
T Consensus        61 ~~aC~t~~~~Gm~v~t~~~   79 (652)
T PRK12814         61 VPACSTAVSEGMVIETENA   79 (652)
T ss_pred             ecCcCCCCCCCCEEEeCcH
Confidence            7899999999999998665

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

Probab=98.68  E-value=3.4e-08  Score=88.12  Aligned_cols=71  Identities=37%  Similarity=0.659  Sum_probs=59.2

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVL  122 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL  122 (144)
                      |.||+|   ||+ ++++++|+|||+|++++||+||+-|.      .|.|..|.|++..+.                ..+-
T Consensus         1 m~tI~I---DG~-ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~~   60 (693)
T COG1034           1 MVTITI---DGK-EIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLVA   60 (693)
T ss_pred             CeEEEE---CCE-EEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------cccc
Confidence            357888   675 89999999999999999999999997      588999999883321                3477


Q ss_pred             eeeceECCCeEEEcCCc
Q 032269          123 TCAAYPTSDVTIETHKE  139 (144)
Q Consensus       123 aCq~~~~~dl~I~~~~~  139 (144)
                      +|.+.+..+++|.+.++
T Consensus        61 SC~tpv~dGM~I~T~s~   77 (693)
T COG1034          61 SCATPVTDGMVISTNSE   77 (693)
T ss_pred             ccccccCCCeEEecCCH
Confidence            99998888999988765

>PRK09130 NADH dehydrogenase subunit G; Validated

Probab=98.67  E-value=4.5e-08  Score=87.61  Aligned_cols=71  Identities=35%  Similarity=0.564  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT  123 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa  123 (144)
                      ++|+|   ||+ ++++++|+|||+|++++||.||+.|.      .|.|+.|.|+|..+.               ...+-+
T Consensus         2 ~~~~I---dg~-~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~s   62 (687)
T PRK09130          2 VKLKV---DGK-EIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVAS   62 (687)
T ss_pred             eEEEE---CCE-EEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCcccc
Confidence            57888   675 89999999999999999999999997      799999999983210               124669


Q ss_pred             eeceECCCeEEEcCCc
Q 032269          124 CAAYPTSDVTIETHKE  139 (144)
Q Consensus       124 Cq~~~~~dl~I~~~~~  139 (144)
                      |.+.+...|+|.+..+
T Consensus        63 C~~~v~~gm~v~T~s~   78 (687)
T PRK09130         63 CAMPVGEGMVIFTNTP   78 (687)
T ss_pred             cCCCCCCCCEEEeCCH
Confidence            9999999999998764

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=98.56  E-value=1.1e-07  Score=83.71  Aligned_cols=66  Identities=32%  Similarity=0.575  Sum_probs=56.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC
Q 032269           58 GGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD  131 (144)
Q Consensus        58 ~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d  131 (144)
                      +|+ ++++++|+|||++++++||.||+.|.      .|.|..|.|+| +|..              ...+.||.+.+..+
T Consensus         4 dg~-~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~~--------------~~~~~aC~~~~~~g   67 (603)
T TIGR01973         4 DGK-ELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKFP--------------DKPVASCATPVTDG   67 (603)
T ss_pred             CCE-EEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCCC--------------CCcccccCCCCCCC
Confidence            675 89999999999999999999999997      79999999998 2210              02478999999999


Q ss_pred             eEEEcCCc
Q 032269          132 VTIETHKE  139 (144)
Q Consensus       132 l~I~~~~~  139 (144)
                      |+|.+.++
T Consensus        68 m~v~t~~~   75 (603)
T TIGR01973        68 MKISTNSE   75 (603)
T ss_pred             CEEEeCCH
Confidence            99988664

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PRK09129 NADH dehydrogenase subunit G; Validated

Probab=98.52  E-value=2.1e-07  Score=84.16  Aligned_cols=70  Identities=26%  Similarity=0.549  Sum_probs=59.4

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT  123 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa  123 (144)
                      ++|+|   ||+ ++++++|+|||+|++++|+.||+.|.      .|.|..|.|++ +|.               ...+.|
T Consensus         2 ~~~~i---dg~-~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~a   61 (776)
T PRK09129          2 VEIEI---DGK-KVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLPA   61 (776)
T ss_pred             eEEEE---CCE-EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCcc
Confidence            57788   675 89999999999999999999999998      58999999998 221               124779


Q ss_pred             eeceECCCeEEEcCCc
Q 032269          124 CAAYPTSDVTIETHKE  139 (144)
Q Consensus       124 Cq~~~~~dl~I~~~~~  139 (144)
                      |.+.+..+|+|.+..+
T Consensus        62 C~~~~~~gm~v~t~~~   77 (776)
T PRK09129         62 CATPVTDGMKVFTRSE   77 (776)
T ss_pred             cCCCCCCCCEEEcCCH
Confidence            9999999999988764

>PRK08493 NADH dehydrogenase subunit G; Validated

Probab=98.49  E-value=2.8e-07  Score=83.86  Aligned_cols=68  Identities=24%  Similarity=0.502  Sum_probs=57.4

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEe
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLT  123 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLa  123 (144)
                      ++|+|   +|+ ++++++|+|||++++++|+.||+.|.      .|.|+.|.|+| +|.                 .++|
T Consensus         2 v~i~I---dG~-~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~A   59 (819)
T PRK08493          2 ITITI---NGK-ECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVYS   59 (819)
T ss_pred             eEEEE---CCE-EEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Eecc
Confidence            57888   675 79999999999999999999998884      58999999988 221                 1679


Q ss_pred             eeceECCCeEEEcCCc
Q 032269          124 CAAYPTSDVTIETHKE  139 (144)
Q Consensus       124 Cq~~~~~dl~I~~~~~  139 (144)
                      |++.+...|+|.+..+
T Consensus        60 C~t~v~dGM~V~T~s~   75 (819)
T PRK08493         60 CNTKAKEGMNILTNTP   75 (819)
T ss_pred             ccCCCCCCCEEEecCH
Confidence            9999999999988654

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=98.45  E-value=3.7e-07  Score=82.91  Aligned_cols=69  Identities=26%  Similarity=0.574  Sum_probs=59.0

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVL  122 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL  122 (144)
                      +++|+|   ||+ ++++++|+|||+|++++||.||+.|.      .|.|..|.|+| +|.               ...+-
T Consensus         4 ~v~~~i---dg~-~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~~   63 (797)
T PRK07860          4 LVTLTI---DGV-EVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQA   63 (797)
T ss_pred             eEEEEE---CCE-EEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------ccccc
Confidence            467888   675 89999999999999999999999997      69999999999 221               12466


Q ss_pred             eeeceECCCeEEEcC
Q 032269          123 TCAAYPTSDVTIETH  137 (144)
Q Consensus       123 aCq~~~~~dl~I~~~  137 (144)
                      ||.+.+..+|+|+..
T Consensus        64 aC~t~v~~gm~V~t~   78 (797)
T PRK07860         64 SCTTTVTDGMVVKTQ   78 (797)
T ss_pred             ccCCCCCCCcEEEeC
Confidence            999999999999986

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B

Probab=98.37  E-value=7.8e-07  Score=62.73  Aligned_cols=53  Identities=30%  Similarity=0.551  Sum_probs=39.3

Q ss_pred             EEEEcCCchhHHHHHHH------cCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC
Q 032269           61 EEINCPDDSFILDAAEE------AGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD  131 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~------~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d  131 (144)
                      ++++++++.|+|++|..      .-+...++|+.|+||+|.++| .|.                 -+|||.+.+...
T Consensus        21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~~   79 (110)
T PF13085_consen   21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDDL   79 (110)
T ss_dssp             EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGGC
T ss_pred             EEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchhc
Confidence            46888999999999974      256678999999999999998 222                 388888887543

...

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=98.25  E-value=1.5e-06  Score=69.21  Aligned_cols=57  Identities=19%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             EEEEcCCchhHHHHHHHc-------------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeece
Q 032269           61 EEINCPDDSFILDAAEEA-------------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAY  127 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~-------------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~  127 (144)
                      ++++++++.|||++|..-             -+.+.++|+.|+||+|.++| .|.                 -+|||+++
T Consensus        25 y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~   86 (249)
T PRK08640         25 FEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK-----------------PRQACTAL   86 (249)
T ss_pred             EEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc-----------------cchhhhCh
Confidence            456677999999999843             25678899999999999998 332                 26888777


Q ss_pred             EC---CCeEEE
Q 032269          128 PT---SDVTIE  135 (144)
Q Consensus       128 ~~---~dl~I~  135 (144)
                      +.   +.++|+
T Consensus        87 v~~~~~~i~ie   97 (249)
T PRK08640         87 IDQLEQPIRLE   97 (249)
T ss_pred             HHHcCCcEEEE
Confidence            63   345554

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional

Probab=98.24  E-value=1.5e-06  Score=68.87  Aligned_cols=57  Identities=23%  Similarity=0.484  Sum_probs=43.3

Q ss_pred             EEEEcCCchhHHHHHHHc------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECC----
Q 032269           61 EEINCPDDSFILDAAEEA------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTS----  130 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~----  130 (144)
                      ++++++++.|||++|..-      -+.+.++|+.|+||+|.++| .|.                 -+|||.+.+..    
T Consensus        26 y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~~~~~   87 (239)
T PRK13552         26 YQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR-----------------PTLACRTLTSDYPDG   87 (239)
T ss_pred             EEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe-----------------EhhhhhccHhhcCCC
Confidence            467777999999999753      25678999999999999998 332                 37888887653    


Q ss_pred             CeEEE
Q 032269          131 DVTIE  135 (144)
Q Consensus       131 dl~I~  135 (144)
                      .++|+
T Consensus        88 ~i~ie   92 (239)
T PRK13552         88 VITLM   92 (239)
T ss_pred             cEEEE
Confidence            45555

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional

Probab=98.18  E-value=9e-06  Score=63.52  Aligned_cols=49  Identities=31%  Similarity=0.599  Sum_probs=38.6

Q ss_pred             eEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269           50 YKVKLITPGG-EEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      ++++|   || .++++++++++||++++++ |+ ..+++|+.|.||.|.| +++|.
T Consensus        52 i~~~V---NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~  103 (217)
T PRK11433         52 VTLKV---NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGR  103 (217)
T ss_pred             EEEEE---CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCE
Confidence            44444   45 4578999999999999985 44 4789999999999999 55664

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional

Probab=98.17  E-value=4.4e-06  Score=66.67  Aligned_cols=38  Identities=21%  Similarity=0.634  Sum_probs=33.8

Q ss_pred             EEEEcCCchhHHHHHHHcCC------CCCCCCCCcccccCEEEE
Q 032269           61 EEINCPDDSFILDAAEEAGL------DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~Gi------~i~~~C~~G~CgtC~v~v   98 (144)
                      ++++++++.|||++|+.-+.      .+.++|+.|.||+|.+.|
T Consensus        22 y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I   65 (251)
T PRK12386         22 YTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI   65 (251)
T ss_pred             EEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE
Confidence            56788899999999999664      678999999999999998

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional

Probab=98.11  E-value=3.4e-06  Score=66.98  Aligned_cols=58  Identities=26%  Similarity=0.466  Sum_probs=42.2

Q ss_pred             EEEEcCCchhHHHHHHHc------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC---CC
Q 032269           61 EEINCPDDSFILDAAEEA------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT---SD  131 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~---~d  131 (144)
                      +.++++++.|||+++...      .+...++|+.|+||+|.++|- |.                 .+|||++.+.   +.
T Consensus        27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~In-G~-----------------~~laC~t~~~~~~~~   88 (244)
T PRK12385         27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVN-NV-----------------PKLACKTFLRDYTGG   88 (244)
T ss_pred             EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceEC-cc-----------------ChhhHhhHHHHcCCC
Confidence            457778999999999653      345568999999999999993 42                 2567777665   24


Q ss_pred             eEEEc
Q 032269          132 VTIET  136 (144)
Q Consensus       132 l~I~~  136 (144)
                      ++|+.
T Consensus        89 ~~ieP   93 (244)
T PRK12385         89 MKVEA   93 (244)
T ss_pred             eEEee
Confidence            56553

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=98.08  E-value=7.7e-06  Score=67.52  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             EEEEcCCchhHHHHHHHcCCCCC------CCCCCcccccCEEEE
Q 032269           61 EEINCPDDSFILDAAEEAGLDLP------YSCRAGACSSCTGKV   98 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~Gi~i~------~~C~~G~CgtC~v~v   98 (144)
                      +++++++|+|||+++...++.++      .+|+.|.||+|.|+|
T Consensus        21 ~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i   64 (329)
T PRK12577         21 YTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI   64 (329)
T ss_pred             EEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE
Confidence            57889999999999999998874      468899999999999

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional

Probab=98.05  E-value=1.3e-05  Score=59.87  Aligned_cols=51  Identities=24%  Similarity=0.455  Sum_probs=41.0

Q ss_pred             EEEEEcCCCeEEEEcCCchhHHHHHHHcCC-CCCCCCCCcccccCEEEEeeCc
Q 032269           51 KVKLITPGGEEEINCPDDSFILDAAEEAGL-DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi-~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      .|+|..++..++++++++++||+.+++.|+ ....+|+.|.||.|.|.| +|.
T Consensus         8 ~i~~~vNG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~   59 (159)
T PRK09908          8 TIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT   59 (159)
T ss_pred             eEEEEECCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence            344433333567889999999999999887 689999999999999987 554

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]

Probab=98.04  E-value=1.2e-05  Score=72.38  Aligned_cols=68  Identities=25%  Similarity=0.598  Sum_probs=53.4

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVL  122 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL  122 (144)
                      +++|+|   +|+ ++++++|+|||+++.++||.||+-|.      -+.|.+|.|.+ +|.                 ..-
T Consensus         5 ~i~vti---dg~-~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG~-----------------l~r   62 (978)
T COG3383           5 MITVTI---DGR-SIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DGK-----------------LVR   62 (978)
T ss_pred             eEEEEE---CCe-EEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cCc-----------------eec
Confidence            467788   675 89999999999999999999999997      38899999985 554                 234


Q ss_pred             eeeceECCCeEEEcCC
Q 032269          123 TCAAYPTSDVTIETHK  138 (144)
Q Consensus       123 aCq~~~~~dl~I~~~~  138 (144)
                      +|-+.+...++|....
T Consensus        63 sCsT~v~dGm~v~t~s   78 (978)
T COG3383          63 SCSTPVEDGMVVRTNS   78 (978)
T ss_pred             cccccccCCcEEeccc
Confidence            6666666666666544

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein

Probab=97.95  E-value=6.3e-06  Score=64.23  Aligned_cols=40  Identities=35%  Similarity=0.606  Sum_probs=33.4

Q ss_pred             EEEEcCCchhHHHHHHHcC------CCCCCCCCCcccccCEEEEeeC
Q 032269           61 EEINCPDDSFILDAAEEAG------LDLPYSCRAGACSSCTGKVVSG  101 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~G------i~i~~~C~~G~CgtC~v~v~~G  101 (144)
                      +++++++|+|||+++.+.+      +....+|+.|.||+|.|+| .|
T Consensus        17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG   62 (220)
T TIGR00384        17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NG   62 (220)
T ss_pred             EEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CC
Confidence            4678889999999999855      3456899999999999987 45

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

Probab=97.94  E-value=7e-06  Score=65.47  Aligned_cols=56  Identities=20%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             EEEE-cCCchhHHHHHHHc----------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269           61 EEIN-CPDDSFILDAAEEA----------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP  128 (144)
Q Consensus        61 ~~i~-v~~g~tLL~a~~~~----------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  128 (144)
                      ++|+ ++++.|||++|..-          .+.+.++|+.|+||+|.++| .|...      |.     -.-+|||++.+
T Consensus        22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p~------~~-----~~~~LAC~t~~   88 (250)
T PRK07570         22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRPH------GP-----DRGTTTCQLHM   88 (250)
T ss_pred             EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCccC------CC-----Ccccchhhhhh
Confidence            3455 55899999999742          36788999999999999998 44431      11     11278888765

>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit

Probab=97.83  E-value=1.8e-05  Score=64.02  Aligned_cols=50  Identities=28%  Similarity=0.562  Sum_probs=37.6

Q ss_pred             EEEcC--C-chhHHHHHHHc------CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           62 EINCP--D-DSFILDAAEEA------GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        62 ~i~v~--~-g~tLL~a~~~~------Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      +|+++  + +.|||+++..-      -+.+.++|+.|+||+|.++| .|.                 -+|||++++.
T Consensus        63 ~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~v~  121 (276)
T PLN00129         63 SYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK-----------------NTLACLTKID  121 (276)
T ss_pred             EEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc-----------------ccccccccHh
Confidence            44554  3 79999999762      24578999999999999998 332                 4788888765

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit

Probab=97.82  E-value=4.9e-05  Score=56.23  Aligned_cols=49  Identities=27%  Similarity=0.557  Sum_probs=39.1

Q ss_pred             EEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269           51 KVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      ++++  ++..++++++++++||+.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus         3 ~~~v--NG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~   53 (148)
T TIGR03193         3 RLTV--NGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR   53 (148)
T ss_pred             EEEE--CCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence            4555  3334578899999999999974 75 589999999999999988 553

4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.

>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=97.82  E-value=2.3e-05  Score=61.97  Aligned_cols=57  Identities=26%  Similarity=0.454  Sum_probs=40.3

Q ss_pred             EEEcCC-chhHHHHHHHc-----CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC---CCe
Q 032269           62 EINCPD-DSFILDAAEEA-----GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT---SDV  132 (144)
Q Consensus        62 ~i~v~~-g~tLL~a~~~~-----Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~---~dl  132 (144)
                      ++++.+ +.|||++|..-     .+.+.++|+.|+||+|.++| .|.                 -+|||++++.   .++
T Consensus        26 ~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~~~~~~i   87 (235)
T PRK12575         26 EIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQALPREI   87 (235)
T ss_pred             EecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHhHcCCCE
Confidence            344444 46899998753     34567899999999999998 332                 5888888775   445


Q ss_pred             EEEc
Q 032269          133 TIET  136 (144)
Q Consensus       133 ~I~~  136 (144)
                      +|+.
T Consensus        88 ~ieP   91 (235)
T PRK12575         88 VLRP   91 (235)
T ss_pred             EEeE
Confidence            6653

>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=97.81  E-value=4.1e-05  Score=61.92  Aligned_cols=40  Identities=20%  Similarity=0.373  Sum_probs=34.0

Q ss_pred             EEEEcCCchhHHHHHHHcCCCC------CCCCCCcccccCEEEEeeC
Q 032269           61 EEINCPDDSFILDAAEEAGLDL------PYSCRAGACSSCTGKVVSG  101 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~~G  101 (144)
                      +.+++++|+|||+++.+.+..+      .++|+.|.||+|.|+| .|
T Consensus        27 ~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG   72 (279)
T PRK12576         27 YKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NG   72 (279)
T ss_pred             EEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CC
Confidence            4688899999999999976543      5789999999999999 44

>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=97.79  E-value=2.7e-05  Score=61.15  Aligned_cols=41  Identities=27%  Similarity=0.418  Sum_probs=34.4

Q ss_pred             EEEEcC-CchhHHHHHHHcC-CC-----CCCCCCCcccccCEEEEeeCc
Q 032269           61 EEINCP-DDSFILDAAEEAG-LD-----LPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        61 ~~i~v~-~g~tLL~a~~~~G-i~-----i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      ++++++ +++|||++|.+.+ ..     ..++|+.|.||+|.|+| .|.
T Consensus        20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~   67 (232)
T PRK05950         20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGK   67 (232)
T ss_pred             EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCc
Confidence            468888 9999999999987 33     36789999999999999 553

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

Probab=97.78  E-value=2.8e-05  Score=61.45  Aligned_cols=38  Identities=32%  Similarity=0.548  Sum_probs=31.7

Q ss_pred             EEEEcCCchhHHHHHHH------cCCCCCCCCCCcccccCEEEE
Q 032269           61 EEINCPDDSFILDAAEE------AGLDLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~------~Gi~i~~~C~~G~CgtC~v~v   98 (144)
                      ++++.++|.|||++|..      ..+.+.++|+.|+||+|.+.|
T Consensus        22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I   65 (234)
T COG0479          22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI   65 (234)
T ss_pred             EEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE
Confidence            35666699999999975      245678999999999999988

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=97.69  E-value=2e-05  Score=63.37  Aligned_cols=66  Identities=20%  Similarity=0.200  Sum_probs=49.3

Q ss_pred             cccccccchHHHhcCCcccccCCCCCceeeeccCCcCCCCccccccceEEE-EEcCCCeEEEEcCCchhHHHHHH
Q 032269            3 TLSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVK-LITPGGEEEINCPDDSFILDAAE   76 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~~~~~~~~~~~~m~~~~V~-i~~~~g~~~i~v~~g~tLL~a~~   76 (144)
                      -+|||..|+.+++..+.+.+... .++|+|.|+........     ..... + ..++. .+.+++|+||||+++
T Consensus       200 y~CGp~~fm~av~~~l~~~g~~~-~~vh~E~F~~~~~~~~~-----~~~~~~~-~~s~~-~~~~~~g~t~lea~~  266 (266)
T COG1018         200 YLCGPGPFMQAVRLALEALGVPD-DRVHLEGFGPMLKDTAA-----LLPFTTL-ARSGK-EVRVPPGQTLLEAAE  266 (266)
T ss_pred             EEECCHHHHHHHHHHHHHcCCCh-hcEEEeecCCCCccccc-----cccchhh-ccccc-eEecCCCchHHHhhC
Confidence            37999999999999999877777 99999999987522100     01111 3 44564 799999999999874

>TIGR03198 pucE xanthine dehydrogenase E subunit

Probab=97.42  E-value=0.00043  Score=51.40  Aligned_cols=50  Identities=20%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      ++++|  ++..+++.++++++|++.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus         4 i~f~v--NG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~   55 (151)
T TIGR03198         4 FRFTV--NGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK   55 (151)
T ss_pred             EEEEE--CCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence            45556  2334567888999999999984 76 478899999999999988 553

This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.

>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]

Probab=97.30  E-value=0.00072  Score=50.35  Aligned_cols=51  Identities=25%  Similarity=0.517  Sum_probs=40.1

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      +++++|  ++..++++++++++||+++++. |+ ...++|+.|.||.|-|.+ +|+
T Consensus         3 ~i~ltv--NG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~   55 (156)
T COG2080           3 PITLTV--NGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGE   55 (156)
T ss_pred             cEEEEE--CCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCe
Confidence            355666  2335679999999999999954 55 478999999999999977 664

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit

Probab=96.80  E-value=0.0019  Score=55.76  Aligned_cols=39  Identities=28%  Similarity=0.514  Sum_probs=34.2

Q ss_pred             eEEE-EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           60 EEEI-NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        60 ~~~i-~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      .+++ +++++++||+.++++ |+ ....+|+.|.||.|.|.|
T Consensus         9 ~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~   50 (467)
T TIGR02963         9 TVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV   50 (467)
T ss_pred             EEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence            4567 589999999999975 76 589999999999999998

Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and

>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1

Probab=96.69  E-value=0.0032  Score=58.02  Aligned_cols=47  Identities=28%  Similarity=0.588  Sum_probs=39.7

Q ss_pred             EEEEEcCCCeEEEEcCCchhHHHHHHH-cCC-CCCCCCCCcccccCEEEEeeCc
Q 032269           51 KVKLITPGGEEEINCPDDSFILDAAEE-AGL-DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~-~Gi-~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      ++++   ||. +++++++++||+.|++ .|+ ....+|+.|.||.|.|.| +|.
T Consensus         2 ~~~~---ng~-~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~   50 (848)
T TIGR03311         2 EFIV---NGR-EVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGK   50 (848)
T ss_pred             EEEE---CCE-EeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCe
Confidence            4666   565 7999999999999997 486 689999999999999988 554

Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.

>PRK09800 putative hypoxanthine oxidase; Provisional

Probab=96.60  E-value=0.0044  Score=57.87  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=38.4

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCC-CCCC-CCCcccccCEEEEeeCc
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLD-LPYS-CRAGACSSCTGKVVSGT  102 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~-i~~~-C~~G~CgtC~v~v~~G~  102 (144)
                      ++++|  ++..++++++++++||+.|++.|+. .... |+.|.||.|.|.| +|.
T Consensus         3 i~~~v--Ng~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~   54 (956)
T PRK09800          3 IHFTL--NGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGN   54 (956)
T ss_pred             EEEEE--CCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCe
Confidence            34555  3335678899999999999997764 5566 7899999999988 554

>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]

Probab=96.46  E-value=0.0046  Score=54.03  Aligned_cols=42  Identities=26%  Similarity=0.559  Sum_probs=37.1

Q ss_pred             CCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEee
Q 032269           58 GGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVS  100 (144)
Q Consensus        58 ~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~  100 (144)
                      ++. .+.|++|.|+|+|+...|++||-.|.      .|.|..|.|+|..
T Consensus        38 d~~-~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek   85 (708)
T KOG2282|consen   38 DDQ-SVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK   85 (708)
T ss_pred             CCe-eEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence            564 79999999999999999999999997      5889999888843

>PLN00192 aldehyde oxidase

Probab=95.95  E-value=0.015  Score=56.05  Aligned_cols=48  Identities=15%  Similarity=0.369  Sum_probs=37.6

Q ss_pred             eEEEEEcCCCeEEE-EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269           50 YKVKLITPGGEEEI-NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        50 ~~V~i~~~~g~~~i-~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~   99 (144)
                      .++++  ++..+++ .+++++|||+.++++ |+ ....+|+.|.||.|-|.|-
T Consensus         6 i~~~v--Ng~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~   56 (1344)
T PLN00192          6 LVFAV--NGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLS   56 (1344)
T ss_pred             EEEEE--CCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEe
Confidence            34444  3334456 589999999999975 76 5899999999999999993

>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit

Probab=95.72  E-value=0.015  Score=54.29  Aligned_cols=42  Identities=12%  Similarity=0.109  Sum_probs=35.6

Q ss_pred             eEEEEcCCchhHHHHHHHcCCC-CCC-CCCCcccccCEEEEeeCc
Q 032269           60 EEEINCPDDSFILDAAEEAGLD-LPY-SCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        60 ~~~i~v~~g~tLL~a~~~~Gi~-i~~-~C~~G~CgtC~v~v~~G~  102 (144)
                      .++++++++++||+.|++.|+. +.. .|+.|.||.|.|.| +|.
T Consensus         7 ~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~   50 (951)
T TIGR03313         7 PQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGV   50 (951)
T ss_pred             EEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCe
Confidence            4578899999999999998764 676 69999999999988 554

Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.

>TIGR02969 mam_aldehyde_ox aldehyde oxidase

Probab=95.50  E-value=0.021  Score=55.12  Aligned_cols=47  Identities=23%  Similarity=0.510  Sum_probs=37.2

Q ss_pred             eEEEEEcCCCeE--EEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269           50 YKVKLITPGGEE--EINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        50 ~~V~i~~~~g~~--~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~   99 (144)
                      +++++   ||+.  ...+++++|||+.|++. |+ ....+|+.|.||.|-|.|-
T Consensus         3 ~~~~~---Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~   53 (1330)
T TIGR02969         3 LLFYV---NGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS   53 (1330)
T ss_pred             EEEEE---CCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence            34555   4532  34789999999999974 76 5899999999999999884

Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.19  E-value=0.088  Score=49.37  Aligned_cols=75  Identities=12%  Similarity=0.061  Sum_probs=54.5

Q ss_pred             ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCC-----C------CCCCcccccCEEEEeeCcccCCcCCCCCccc
Q 032269           47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLP-----Y------SCRAGACSSCTGKVVSGTVDQSEQSFLDDDQ  115 (144)
Q Consensus        47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~-----~------~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~  115 (144)
                      -..++++|   +|+ .+++.+|+||..|++.+|+.+-     +      -|..|.|-.|.|+|-.|..            
T Consensus        10 ~~~~~~~~---dg~-~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~------------   73 (985)
T TIGR01372        10 SRPLRFTF---DGK-SYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQ------------   73 (985)
T ss_pred             CCeEEEEE---CCE-EeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcC------------
Confidence            34456666   675 7999999999999999998642     1      3777889999999943311            


Q ss_pred             cCCCeEEeeeceECCCeEEEcCC
Q 032269          116 MGEGFVLTCAAYPTSDVTIETHK  138 (144)
Q Consensus       116 ~~~g~rLaCq~~~~~dl~I~~~~  138 (144)
                       ....+.||++.+..+|+|+...
T Consensus        74 -~~~~~~ac~~~~~~gm~~~~~~   95 (985)
T TIGR01372        74 -REPNTRATTQELYDGLVATSQN   95 (985)
T ss_pred             -CCCCccceeEEcccCCEEeccc
Confidence             0112568999888888887643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=95.14  E-value=0.0084  Score=46.52  Aligned_cols=31  Identities=26%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             hhHHHHHHHcCCC------CCCCCCCcccccCEEEEe
Q 032269           69 SFILDAAEEAGLD------LPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        69 ~tLL~a~~~~Gi~------i~~~C~~G~CgtC~v~v~   99 (144)
                      +.+.+++++.|++      -...|+.|.||.|.|...
T Consensus       180 ~~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~  216 (233)
T cd06220         180 YKVLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT  216 (233)
T ss_pred             HHHHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence            4566666667763      134799999999999974

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]

Probab=94.66  E-value=0.065  Score=42.27  Aligned_cols=32  Identities=31%  Similarity=0.648  Sum_probs=25.0

Q ss_pred             CchhHHHHHHH--cCC----CCCCCCCCcccccCEEEE
Q 032269           67 DDSFILDAAEE--AGL----DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        67 ~g~tLL~a~~~--~Gi----~i~~~C~~G~CgtC~v~v   98 (144)
                      =|--+|||+.+  +..    -+.-+|+.|+||+|...+
T Consensus        75 CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI  112 (288)
T KOG3049|consen   75 CGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI  112 (288)
T ss_pred             cchHHHHHHHHhhcccCCceehhhhhhccccccceecc
Confidence            36689999975  333    356799999999999987

>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]

Probab=92.15  E-value=0.41  Score=40.82  Aligned_cols=49  Identities=22%  Similarity=0.453  Sum_probs=36.3

Q ss_pred             eEEEEEcCCCe-EEEEcCCchhHHHHHH-HcCC-CCCCCCCCcccccCEEEE
Q 032269           50 YKVKLITPGGE-EEINCPDDSFILDAAE-EAGL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        50 ~~V~i~~~~g~-~~i~v~~g~tLL~a~~-~~Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      .+|.|..++.. ..-.+++..||||.++ +.++ .-.-+|..|-||.|.|-|
T Consensus         7 ~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV   58 (493)
T COG4630           7 NTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV   58 (493)
T ss_pred             ceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence            45666444442 2346799999999998 5555 367789999999999976

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=88.85  E-value=0.51  Score=36.93  Aligned_cols=31  Identities=19%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             hHHHHHHHcCCCC------CCCCCCcccccCEEEEeeC
Q 032269           70 FILDAAEEAGLDL------PYSCRAGACSSCTGKVVSG  101 (144)
Q Consensus        70 tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~~G  101 (144)
                      .+.+.+++.|++.      ...|+.|.|+.|.++. .|
T Consensus       194 ~~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~-~~  230 (248)
T cd06219         194 AVSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV-GG  230 (248)
T ss_pred             HHHHHHHHcCCCEEEEecccccCccceeeeEEEEe-CC
Confidence            3556666788863      5679999999999986 44

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=87.80  E-value=0.39  Score=37.60  Aligned_cols=31  Identities=19%  Similarity=0.493  Sum_probs=23.1

Q ss_pred             hHHHHHHHcCCCC------CCCCCCcccccCEEEEee
Q 032269           70 FILDAAEEAGLDL------PYSCRAGACSSCTGKVVS  100 (144)
Q Consensus        70 tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~~  100 (144)
                      .+.++++++|++.      ...|+.|.||+|.+.+..
T Consensus       195 ~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~  231 (250)
T PRK00054        195 KVVEILKEKKVPAYVSLERRMKCGIGACGACVCDTET  231 (250)
T ss_pred             HHHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCC
Confidence            4556667788743      457999999999998644

>PLN02906 xanthine dehydrogenase

Probab=86.81  E-value=0.67  Score=45.03  Aligned_cols=32  Identities=28%  Similarity=0.604  Sum_probs=27.9

Q ss_pred             chhHHHHHHHcCC-CCCCCCCCcccccCEEEEe
Q 032269           68 DSFILDAAEEAGL-DLPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        68 g~tLL~a~~~~Gi-~i~~~C~~G~CgtC~v~v~   99 (144)
                      ++|||+.|++.|+ ....+|+.|.||.|.|.|-
T Consensus         1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~   33 (1319)
T PLN02906          1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS   33 (1319)
T ss_pred             CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence            4689999998665 4789999999999999985

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=86.70  E-value=0.79  Score=35.84  Aligned_cols=32  Identities=28%  Similarity=0.537  Sum_probs=24.6

Q ss_pred             hhHHHHHHHcCCCC------CCCCCCcccccCEEEEee
Q 032269           69 SFILDAAEEAGLDL------PYSCRAGACSSCTGKVVS  100 (144)
Q Consensus        69 ~tLL~a~~~~Gi~i------~~~C~~G~CgtC~v~v~~  100 (144)
                      +.+.+.+++.|++.      +..|+.|.||.|+....+
T Consensus       193 ~~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~  230 (246)
T cd06218         193 KAVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKD  230 (246)
T ss_pred             HHHHHHHHhcCCCEEEEecccccCccceecccEEEeec
Confidence            35566677788863      567999999999998854

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=84.18  E-value=0.69  Score=37.18  Aligned_cols=33  Identities=18%  Similarity=0.475  Sum_probs=25.6

Q ss_pred             hhHHHHHHHcCCC---------CCCCCCCcccccCEEEEeeC
Q 032269           69 SFILDAAEEAGLD---------LPYSCRAGACSSCTGKVVSG  101 (144)
Q Consensus        69 ~tLL~a~~~~Gi~---------i~~~C~~G~CgtC~v~v~~G  101 (144)
                      +.+.+.+++.|++         -...|+.|.||.|+|....|
T Consensus       225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~  266 (289)
T PRK08345        225 KFVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTS  266 (289)
T ss_pred             HHHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCc
Confidence            4577777788885         24579999999999987554

>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]

Probab=83.96  E-value=1.9  Score=41.29  Aligned_cols=37  Identities=27%  Similarity=0.473  Sum_probs=31.0

Q ss_pred             EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEee
Q 032269           64 NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVS  100 (144)
Q Consensus        64 ~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~  100 (144)
                      .++++.||+..++++ ++ .....|+.|.||.|.|-|-.
T Consensus        16 ~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~   54 (1257)
T KOG0430|consen   16 LLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSK   54 (1257)
T ss_pred             cCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEec
Confidence            478999999999875 54 47899999999999998844

>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []

Probab=81.08  E-value=0.98  Score=26.01  Aligned_cols=18  Identities=39%  Similarity=0.911  Sum_probs=14.0

Q ss_pred             CCCCCcccccCEEEEeeC
Q 032269           84 YSCRAGACSSCTGKVVSG  101 (144)
Q Consensus        84 ~~C~~G~CgtC~v~v~~G  101 (144)
                      ..|+.|.|+.|.+....+
T Consensus         4 M~CG~G~C~~C~v~~~~~   21 (40)
T PF10418_consen    4 MACGVGACGGCVVPVKDG   21 (40)
T ss_dssp             -SSSSSSS-TTEEECSST
T ss_pred             ccCCCcEeCCcEeeeecC
Confidence            479999999999988654

The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=80.01  E-value=3.6  Score=25.47  Aligned_cols=28  Identities=25%  Similarity=0.380  Sum_probs=23.2

Q ss_pred             EEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC
Q 032269           51 KVKLITPGGEEEINCPDDSFILDAAEEAGLDL   82 (144)
Q Consensus        51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i   82 (144)
                      +|++   +|+ .++++++.||.+++...|++.
T Consensus         2 ~i~v---NG~-~~~~~~~~tl~~lL~~l~~~~   29 (66)
T PRK05659          2 NIQL---NGE-PRELPDGESVAALLAREGLAG   29 (66)
T ss_pred             EEEE---CCe-EEEcCCCCCHHHHHHhcCCCC
Confidence            5777   565 789999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
1off_A	97	2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803 L		3e-40
1dox_A	96	1h And 15n Sequential Assignment, Secondary Structu		2e-39
1gaq_B	98	Crystal Structure Of The Complex Between Ferredoxin		2e-39
3p63_A	96	Structure Of M. Laminosus Ferredoxin With A Shorter		5e-39
2pvg_C	96	Crystal Srtucture Of The Binary Complex Between Fer		7e-39
1pfd_A	96	The Solution Structure Of High Plant Parsley [2fe-2		1e-38
1awd_A	94	Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fu		1e-38
1a70_A	97	Spinach Ferredoxin Length = 97		3e-37
1rfk_A	98	Crystal Structure Of 2fe2s Ferredoxin From Thermoph		2e-36
1qob_A	98	Ferredoxin Mutation D62k Length = 98		2e-35
1fxa_A	98	Crystallization And Structure Determination To 2.5-		2e-35
4fxc_A	98	Tertiary Structure Of [2fe-2s] Ferredoxin From Spir		3e-35
1qog_A	98	Ferredoxin Mutation S47a Length = 98		4e-35
1j7b_A	98	Structure Of The Anabaena Ferredoxin Mutant E94k Le		4e-35
1j7c_A	98	Structure Of The Anabaena Ferredoxin Mutant E95k Le		4e-35
1qof_A	98	Ferredoxin Mutation Q70k Length = 98		5e-35
1j7a_A	98	Structure Of The Anabaena Ferredoxin D68k Mutant Le		9e-35
1qoa_A	98	Ferredoxin Mutation C49s Length = 98		1e-34
3av8_A	97	Refined Structure Of Plant-Type [2fe-2s] Ferredoxin		2e-33
3b2g_A	98	Leptolyngbya Boryana Ferredoxin Length = 98		7e-33
1frr_A	95	Crystal Structure Of [2fe-2s] Ferredoxin I From Equ		1e-32
1fxi_A	96	Structure Of The [2fe-2s] Ferredoxin I From The Blu		1e-32
1roe_A	97	Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elo		2e-32
3ab5_A	97	Crystal Structure Of The 2fe 2s Ferredoxin From Cya		6e-32
1iue_A	98	Crystal Structure Analysis Of Ferredoxin From Plasm		3e-26
1wri_A	93	Crystal Structure Of Ferredoxin Isoform Ii From E.		1e-24
1frd_A	98	Molecular Structure Of The Oxidized, Recombinant, H		4e-19
1e10_A	128	[2fe-2s]-Ferredoxin From Halobacterium Salinarum Le		6e-10
1e0z_A	128	[2fe-2s]-Ferredoxin From Halobacterium Salinarum Le		6e-10
1doi_A	128	2fe-2s Ferredoxin From Haloarcula Marismortui Lengt		9e-10
3zyy_X	631	Reductive Activator For Corrinoid,Iron-Sulfur Prote		8e-08
1krh_A	338	X-Ray Stucture Of Benzoate Dioxygenase Reductase Le		6e-07
1jq4_A	98	[2fe-2s] Domain Of Methane Monooxygenase Reductase		5e-04
2pia_A	321	Phthalate Dioxygenase Reductase: A Modular Structur		6e-04

>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803 Length = 97

Iteration: 1
 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 84/96 (87%)
Query: 47  MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
           MA+Y VKLITP GE  I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS
Sbjct: 1   MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQS 60
Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           +QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct: 61  DQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96

>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis Sp. Pcc 6803 Length = 96

Iteration: 1
 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 83/95 (87%)
Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           A+Y VKLITP GE  I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+
Sbjct: 1   ASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct: 61  QSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95

>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 98

Iteration: 1
 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 83/97 (85%)
Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG+VDQS+
Sbjct: 1   ATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 144
           QS+LDD Q+ +G+VLTC AYPTSDV IETHKEEEL G
Sbjct: 61  QSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 97

>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2 Loop Length = 96

Iteration: 1
 Score =  156 bits (394), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 72/95 (75%), Positives = 81/95 (85%)
Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           ATYKV LI P G + I  PDD +ILDAAEEAG+DLPYSCRAGACS+C GK++SGTVDQS+
Sbjct: 1   ATYKVTLINPTGNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QSFLDDDQ+  G+VLTC AYPTSD  IETHKEEEL
Sbjct: 61  QSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 95

>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin And Ferredoxin:thioredoxin Reductase Length = 96

Iteration: 1
 Score =  155 bits (392), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 83/95 (87%)
Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           A+Y VKLITP GE  I C DD++ILDAAEEAGL+LPYSCRAGACS+C GK+ +G+VDQS+
Sbjct: 1   ASYTVKLITPDGESSIECSDDTYILDAAEEAGLELPYSCRAGACSTCAGKITAGSVDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct: 61  QSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 95

>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s] Ferredoxin, Nmr, 18 Structures Length = 96

Iteration: 1
 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/96 (72%), Positives = 81/96 (84%)
Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           ATY VKLITP GE E  C DD ++LD AEE G+D+PYSCRAG+CSSC GKVVSG++DQS+
Sbjct: 1   ATYNVKLITPDGEVEFKCDDDVYVLDQAEEEGIDIPYSCRAGSCSSCAGKVVSGSIDQSD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
           QSFLDD+QM  G+VLTC AYPTSDV IETHKEEE+ 
Sbjct: 61  QSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEEEIV 96

>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca Length = 94

Iteration: 1
 Score =  154 bits (390), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 80/93 (86%)
Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YKV L TP GEE I CP+D++ILDAAEEAGLDLPYSCRAGACSSC GKV SG VDQS+QS
Sbjct: 1   YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS 60
Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD QMG+GFVLTC AYPTSDVTI TH+E  L
Sbjct: 61  FLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93

>pdb|1A70|A Chain A, Spinach Ferredoxin Length = 97

Iteration: 1
 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 80/93 (86%)
Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YKV L+TP G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QS
Sbjct: 3   YKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQS 62
Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDDDQ+ EG+VLTCAAYP SDVTIETHK+EEL
Sbjct: 63  FLDDDQIDEGWVLTCAAYPVSDVTIETHKKEEL 95

>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic Cyanobacterium Mastigocladus Laminosus Length = 98

Iteration: 1
 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           ATYKV LI    G  + I  PDD +ILDAAEEAG+DLPYSCRAGACS+C GK++SGTVDQ
Sbjct: 1   ATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSD  IETHKEEEL
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 97

>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k Length = 98

Iteration: 1
 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61  SKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1FXA|A Chain A, Crystallization And Structure Determination To 2.5-Angstroms Resolution Of The Oxidized [2fe-2s] Ferredoxin Isolated From Anabaena 7120 Length = 98

Iteration: 1
 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina Platensis Refined At 2.5 Angstroms Resolution: Structural Comparisons Of Plant-Type Ferredoxins And An Electrostatic Potential Analysis Length = 98

Iteration: 1
 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           ATYKV LI    G  E I+C DD++ILDAAEEAGLDLPYSCRAGACS+C G + SGT+DQ
Sbjct: 1   ATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSD TI+TH+EE L
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 97

>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a Length = 98

Iteration: 1
 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGAC++C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACATCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k Length = 98

Iteration: 1
 Score =  142 bits (359), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSDV I+THK+E+L
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKKEDL 97

>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k Length = 98

Iteration: 1
 Score =  142 bits (359), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSDV I+THKE++L
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEKDL 97

>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k Length = 98

Iteration: 1
 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 80/97 (82%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDD++  G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61  SDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant Length = 98

Iteration: 1
 Score =  142 bits (357), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 79/97 (81%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLD DQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61  SDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s Length = 98

Iteration: 1
 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 79/97 (81%), Gaps = 2/97 (2%)
Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+  GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTSAGKLVSGTVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From Aphanothece Sacrum At 1.46 A Resolution Length = 97

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV-DQS 106
           A+YKV L TP G+  I  PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG   DQS
Sbjct: 1   ASYKVTLKTPDGDNVITVPDDEYILDVAEEQGLDLPYSCRAGACSTCAGKLVSGPAPDQS 60
Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           +QSFLDDDQ+  G++LTC AYPT D  IETHKEE L
Sbjct: 61  DQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96

>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin Length = 98

Iteration: 1
 Score =  135 bits (340), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 77/96 (80%), Gaps = 2/96 (2%)
Query: 49  TYKVKLI--TPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
           ++KV LI  T G    I  PDD +ILDAAEE G+DLPYSCRAGACS+C GK+ +GTVDQS
Sbjct: 2   SFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQS 61
Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           +QSFLDDDQ+  G+VLTC AYPTSD TI TH+EE+L
Sbjct: 62  DQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEEDL 97

>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum Arvense At 1.8 Angstroms Resolution Length = 95

Iteration: 1
 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 75/93 (80%)
Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YK  L TP GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VD+SE S
Sbjct: 2   YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGS 61
Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD QM EGFVLTC A P SD+ IETHKEEEL
Sbjct: 62  FLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94

>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green Alga Aphanothece Sacrum At 2.2 Angstroms Resolution Length = 96

Iteration: 1
 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 72/95 (75%)
Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           A+YKV L TP G+  I  PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG     +
Sbjct: 1   ASYKVTLKTPDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDED 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QSFLDDDQ+  G++LTC AYPT D  IETHKEE L
Sbjct: 61  QSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 95

>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus Length = 97

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
Query: 48  ATYKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
           ATYKV L+ P G E  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS
Sbjct: 1   ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS 60
Query: 107 EQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           +QSFLDDDQ+ +GFVLTC AYP SD  I T++EEEL
Sbjct: 61  DQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96

>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From Cyanidioschyzon Merolae Length = 97

Iteration: 1
 Score =  132 bits (332), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 76/95 (80%), Gaps = 2/95 (2%)
Query: 50  YKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           YK++L+    G +  I C  D +ILDAAEE G+DLPYSCRAGACS+C GK+V G+VDQS+
Sbjct: 2   YKIQLVNQKEGIDVTIQCAGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSD 61
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QSFLD+DQ+ +GF+LTC AYPTSD  I+TH+EE L
Sbjct: 62  QSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEAL 96

>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium Falciparum Length = 98

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 68/95 (71%)
Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           A Y + L T  GE++I C +D +ILDA+E   ++LPYSCR G+CS+C  K+V G VD  +
Sbjct: 1   AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDD 60
Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QS+LD++Q+ + ++L C  YP SD  IETHKE+EL
Sbjct: 61  QSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDEL 95

>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense Length = 93

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YKV L TP G+   +      ++D   E   DLP SC+AGACS+C GK+VSGTVDQSE S
Sbjct: 2   YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGS 60
Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD+Q+ +G+VLTC A P SDV IETHKE+EL
Sbjct: 61  FLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant, Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120 Determined To 1.7 Angstroms Resolution Length = 98

Iteration: 1
 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 72/98 (73%), Gaps = 2/98 (2%)
Query: 48  ATYKVKLITPGGEEE--INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           A+Y+V+LI    + +  I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQ
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
           S+Q FLDD+QMG+GF L C  YP S+ TI+TH+E  LA
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 98

>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum Length = 128

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 69  SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV-LTCAAY 127
            +IL+AAE  G D P+SCRAGAC++C   V  G +D   Q  L D+++ E  V LTC   
Sbjct: 46  EYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLTCIGS 105
Query: 128 PTSD 131
           P +D
Sbjct: 106 PAAD 109

>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum Length = 128

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 69  SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV-LTCAAY 127
            +IL+AAE  G D P+SCRAGAC++C   V  G +D   Q  L D+++ E  V LTC   
Sbjct: 46  EYILEAAEAQGYDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLTCIGS 105
Query: 128 PTSD 131
           P +D
Sbjct: 106 PAAD 109

>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui Length = 128

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 69  SFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV-LTCAAY 127
            +IL+AAE  G D P+SCRAGAC++C   V+ G +D   Q  L D+++ +  V LTC   
Sbjct: 46  EYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGS 105
Query: 128 PTSD 131
           P +D
Sbjct: 106 PDAD 109

>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein Length = 631

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 47  MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQ 105
           MA YKV L  P  ++E+   +++ +++A   AG+++   C  AG C  C  +VV G    
Sbjct: 1   MAEYKV-LFKPD-QKEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRV 58
Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIE 135
                L  +++ +G+VL C  YP SD+ IE
Sbjct: 59  ESYGKLKQEEIAQGYVLACQTYPESDLIIE 88

>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase Length = 338

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 73  DAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDD----DQMGEGFVLTCAAYP 128
           DAA    +++P  CR G C +C     SG  D  E ++++D    ++  +G+VL C   P
Sbjct: 28  DAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87
Query: 129 TSDVTIETHKEEEL 142
           TSD   +     E+
Sbjct: 88  TSDAVFQIQASSEV 101

>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From Methylococcus Capsulatus (Bath) Length = 98

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 50  YKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQ 108
           + +  +T  GE     C  D  ++ AA    + L  SCR G C++C      G  D    
Sbjct: 5   HTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGC 64
Query: 109 SF--LDDDQMGEGFVLTCAAYPTSDVTIE 135
           S   L  ++  EG VL C  YP +D+ IE
Sbjct: 65  SVQALPPEEEEEGLVLLCRTYPKTDLEIE 93

>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For Electron Transfer From Pyridine Nucleotides To [2fe-2s] Length = 321

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           + V+L   G   EI  P +  IL+   +A + +P SC +G C SC   + SG  D  +  
Sbjct: 238 FTVRLSRSGTSFEI--PANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDMV 295
Query: 110 FLDDDQ 115
             DD++
Sbjct: 296 LRDDEK 301

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	6e-58
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	7e-57
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	1e-56
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	5e-56
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	7e-54
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	1e-53
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	1e-52
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	2e-46
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	6e-44
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	3e-23
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	5e-22
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	2e-14

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A Length = 97

 Score =  173 bits (442), Expect = 6e-58
 Identities = 68/97 (70%), Positives = 81/97 (83%)

Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           A YKV L+TP G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +
Sbjct: 1   AAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDD 60

Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 144
           QSFLDDDQ+ EG+VLTCAAYP SDVTIETHK+EEL  
Sbjct: 61  QSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEELTA 97

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1 Length = 98

 Score =  171 bits (435), Expect = 7e-57
 Identities = 48/95 (50%), Positives = 68/95 (71%)

Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           A Y + L T  GE++I C +D +ILDA+E   ++LPYSCR G+CS+C  K+V G VD  +
Sbjct: 1   AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDD 60

Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QS+LD++Q+ + ++L C  YP SD  IETHKE+EL
Sbjct: 61  QSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDEL 95

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1 Length = 94

 Score =  170 bits (433), Expect = 1e-56
 Identities = 74/93 (79%), Positives = 80/93 (86%)

Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YKV L TP GEE I CP+D++ILDAAEEAGLDLPYSCRAGACSSC GKV SG VDQS+QS
Sbjct: 1   YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS 60

Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD QMG+GFVLTC AYPTSDVTI TH+E  L
Sbjct: 61  FLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1 Length = 95

 Score =  169 bits (430), Expect = 5e-56
 Identities = 67/93 (72%), Positives = 75/93 (80%)

Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YK  L TP GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VD+SE S
Sbjct: 2   YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGS 61

Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD QM EGFVLTC A P SD+ IETHKEEEL
Sbjct: 62  FLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1 Length = 98

 Score =  164 bits (416), Expect = 7e-54
 Identities = 53/98 (54%), Positives = 71/98 (72%), Gaps = 2/98 (2%)

Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           A+Y+V+LI      +  I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQ
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60

Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
           S+Q FLDD+QMG+GF L C  YP S+ TI+TH+E  LA
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 98

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ... Length = 98

 Score =  163 bits (414), Expect = 1e-53
 Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)

Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60

Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1 Length = 93

 Score =  160 bits (407), Expect = 1e-52
 Identities = 55/93 (59%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YKV L TP G+   +      ++D   E   DLP SC+AGACS+C GK+VSGTVDQSE S
Sbjct: 2   YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGS 60

Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD+Q+ +G+VLTC A P SDV IETHKE+EL
Sbjct: 61  FLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A Length = 128

 Score =  146 bits (369), Expect = 2e-46
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 45  VAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVD 104
           V      + L        +   +  +IL+AAE  G D P+SCRAGAC++C   V+ G +D
Sbjct: 23  VFGEASDMDL-DDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDID 81

Query: 105 QSEQSFLDDDQMGEGFV-LTCAAYPTSDVTIETHKEEEL 142
              Q  L D+++ +  V LTC   P +D     +  + L
Sbjct: 82  MDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNAKHL 120

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2 Length = 98

 Score =  138 bits (351), Expect = 6e-44
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 47  MATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
              + +  +T  GE     C  D  ++ AA    + L  SCR G C++C      G  D 
Sbjct: 2   QRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDL 61

Query: 106 SEQSF--LDDDQMGEGFVLTCAAYPTSDVTIE 135
              S   L  ++  EG VL C  YP +D+ IE
Sbjct: 62  KGCSVQALPPEEEEEGLVLLCRTYPKTDLEIE 93

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 91.7 bits (228), Expect = 3e-23
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 47  MATYKVKL-ITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           M+ ++V L    G    I       + DAA    +++P  CR G C +C     SG  D 
Sbjct: 1   MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDM 60

Query: 106 SEQSF----LDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 144
            E ++    L  ++  +G+VL C   PTSD   +     E+  
Sbjct: 61  PEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEVCK 103

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} Length = 631

 Score = 89.9 bits (222), Expect = 5e-22
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 47  MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQ 105
           MA YKV    P  +E +   +++ +++A   AG+++   C  AG C  C  +VV G    
Sbjct: 1   MAEYKVL-FKPDQKE-VAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRV 58

Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
                L  +++ +G+VL C  YP SD+ IE   +  L
Sbjct: 59  ESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDSRL 95

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 61  EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGF 120
                P +  IL+   +A + +P SC +G C SC   + SG  D      L DD+ G   
Sbjct: 247 TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADH-RDMVLRDDEKG-TQ 304

Query: 121 VLTCAAYPTSD 131
           ++ C +   S 
Sbjct: 305 IMVCVSRAKSA 315

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.94
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	99.94
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	99.94
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	99.94
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	99.94
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	99.93
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	99.93
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	99.93
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	99.91
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	99.9
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	99.89
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	99.89
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	99.88
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	99.88
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	99.88
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	99.87
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	99.87
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	99.87
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	99.86
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	99.85
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.85
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	99.85
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	99.82
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	99.8
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	99.06
1t3q_A	168	Quinoline 2-oxidoreductase small subunit; QOR, mol	98.91
3c8y_A	574	Iron hydrogenase 1; dithiomethylether, H-cluster,	98.81
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	98.73
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	98.53
1ffv_A	163	CUTS, iron-sulfur protein of carbon monoxide dehyd	98.51
1rm6_C	161	4-hydroxybenzoyl-COA reductase gamma subunit; xant	98.5
3hrd_D	160	Nicotinate dehydrogenase small FES subunit; seleni	98.44
1n62_A	166	Carbon monoxide dehydrogenase small chain; CODH, m	98.38
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	98.34
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	98.2
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	97.64
3nvw_A	164	Xanthine dehydrogenase/oxidase; hydroxylase, homod	97.42
2w3s_A	462	Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2	97.33
1vlb_A	907	Aldehyde oxidoreductase; iron-sulphur cluster; HET	97.32
1dgj_A	907	Aldehyde oxidoreductase; beta half-barrel, four-he	97.17
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.93
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.64
3unc_A	1332	Xanthine dehydrogenase/oxidase; oxidoreductase; HE	95.57
3zyv_A	1335	AOH1; oxidoreductase, molybdenum cofactor; HET: MT	92.76
2gpj_A	252	Siderophore-interacting protein; structural genomi	91.41

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.94  E-value=2.5e-27  Score=191.02  Aligned_cols=123  Identities=20%  Similarity=0.422  Sum_probs=105.5

Q ss_pred             ccccccchHHHhcCCcccccCCCCCceeeeccCCcCCCCccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCC
Q 032269            4 LSSAMVSTSFIRSKPTATSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLP   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~F~~~~~~~~~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~   83 (144)
                      +|||..|+..+++.+..  .+ ..+||+|.|+.+.....   ....++|+| .+++. ++++++|+|||++++++|++++
T Consensus       198 vCGP~~m~~~v~~~l~~--~~-~~~i~~E~F~~~~~~~~---~~~~~~v~~-~~~~~-~~~~~~~~~ll~a~~~~g~~~~  269 (321)
T 2pia_A          198 CCGPQALMDTVRDMTGH--WP-SGTVHFESFGATNTNAR---ENTPFTVRL-SRSGT-SFEIPANRSILEVLRDANVRVP  269 (321)
T ss_dssp             EESCHHHHHHHHHHTTT--SC-TTCEEEECCCCCCCCCS---CCCCEEEEE-TTTCC-EEEECTTSCHHHHHHHTTCCCC
T ss_pred             EECCHHHHHHHHHHHHh--CC-HhhEEEEecCCCCCCCC---CCccEEEEE-eCCCe-EEEECCCCcHHHHHHHcCCCCC
Confidence            79999999999998877  44 48999999987542211   123589999 67775 7999999999999999999999


Q ss_pred             CCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC-eEEEc
Q 032269           84 YSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD-VTIET  136 (144)
Q Consensus        84 ~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d-l~I~~  136 (144)
                      ++|+.|.||+|+++|++|++++.+ ..|++++. +|++|+||++|.+| ++|++
T Consensus       270 ~~C~~G~Cg~C~~~v~~G~~~~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l  321 (321)
T 2pia_A          270 SSCESGTCGSCKTALCSGEADHRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL  321 (321)
T ss_dssp             CSCSSSSSCTTEEEEEESCEECCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred             CCCCCCCCCCCEEEEecCcccccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence            999999999999999999998766 57888888 99999999999998 88864

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1

Probab=99.94  E-value=1.1e-26  Score=157.78  Aligned_cols=94  Identities=79%  Similarity=1.269  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      |+|+|+.++|.+++++++|+|||++++++|+.+|++|+.|.||+|+|+|++|++++.+...|+++++++|+||+||+++.
T Consensus         1 ~~v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~   80 (94)
T 1awd_A            1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPT   80 (94)
T ss_dssp             CEEEEEETTEEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES
T ss_pred             CEEEEEeCCCcEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEEC
Confidence            46788546664589999999999999999999999999999999999999999998888889988888999999999999


Q ss_pred             CCeEEEcCCccccc
Q 032269          130 SDVTIETHKEEELA  143 (144)
Q Consensus       130 ~dl~I~~~~~~~~~  143 (144)
                      +|++|++++++++|
T Consensus        81 ~d~~i~~~~~~~~~   94 (94)
T 1awd_A           81 SDVTILTHQEAALY   94 (94)
T ss_dssp             SCEEEECCCGGGGC
T ss_pred             CCEEEEecchhccC
Confidence            99999999988876

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.94  E-value=1.5e-26  Score=156.88  Aligned_cols=94  Identities=71%  Similarity=1.103  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      ++|+|..++|.++|++++|+|||++++++|+++++.|+.|.||+|+|+|.+|++++.+...|+++++++|+||+||+++.
T Consensus         2 ~~v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~   81 (95)
T 1frr_A            2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPE   81 (95)
T ss_dssp             EEEEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred             eEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEEC
Confidence            67888436664589999999999999999999999999999999999999999998888889988888999999999999


Q ss_pred             CCeEEEcCCccccc
Q 032269          130 SDVTIETHKEEELA  143 (144)
Q Consensus       130 ~dl~I~~~~~~~~~  143 (144)
                      +|++|++++++++|
T Consensus        82 ~~~~v~~~~~~~~~   95 (95)
T 1frr_A           82 SDLVIETHKEEELF   95 (95)
T ss_dssp             SCEEEECCCTTTTC
T ss_pred             CCEEEEEcchhhcC
Confidence            99999999988876

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A

Probab=99.94  E-value=1.6e-26  Score=157.84  Aligned_cols=96  Identities=70%  Similarity=1.231  Sum_probs=87.3

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP  128 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  128 (144)
                      .++|+|..+++.+++++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+++.+...|+++++++|+||+||+++
T Consensus         2 ~~~v~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~   81 (97)
T 1a70_A            2 AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYP   81 (97)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEE
T ss_pred             eEEEEEEeCCceEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEE
Confidence            36888854666458999999999999999999999999999999999999999998888888998888899999999999


Q ss_pred             CCCeEEEcCCcccccC
Q 032269          129 TSDVTIETHKEEELAG  144 (144)
Q Consensus       129 ~~dl~I~~~~~~~~~~  144 (144)
                      .+|++|++++++++|.
T Consensus        82 ~~d~~v~~~~~~~~~~   97 (97)
T 1a70_A           82 VSDVTIETHKKEELTA   97 (97)
T ss_dssp             SSCEEEECCCGGGCCC
T ss_pred             CCCEEEEeCchhhccC
Confidence            9999999999988874

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...

Probab=99.94  E-value=2.6e-26  Score=157.04  Aligned_cols=95  Identities=71%  Similarity=1.168  Sum_probs=86.6

Q ss_pred             ceEEEEEcCCC--eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeec
Q 032269           49 TYKVKLITPGG--EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAA  126 (144)
Q Consensus        49 ~~~V~i~~~~g--~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  126 (144)
                      .++|+|..+++  .++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|++++.+...|+++++++|+||+||+
T Consensus         2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~   81 (98)
T 1czp_A            2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred             ceEEEEEeCCCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeC
Confidence            37888865553  4689999999999999999999999999999999999999999988888789988888999999999


Q ss_pred             eECCCeEEEcCCccccc
Q 032269          127 YPTSDVTIETHKEEELA  143 (144)
Q Consensus       127 ~~~~dl~I~~~~~~~~~  143 (144)
                      ++.+|++|++++++++|
T Consensus        82 ~~~~d~~v~~~~~~~~~   98 (98)
T 1czp_A           82 YPTSDVVIQTHKEEDLY   98 (98)
T ss_dssp             EESSCEEEECCCTTTTC
T ss_pred             EECCCEEEEeccccccC
Confidence            99999999999998886

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1

Probab=99.93  E-value=2.3e-26  Score=157.41  Aligned_cols=95  Identities=49%  Similarity=1.003  Sum_probs=86.1

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP  128 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  128 (144)
                      .++|+|..+++.+++++++|+|||++++++|++++++|+.|.||+|+|+|++|++++.+...|+++++++|+||+||+++
T Consensus         2 ~~~v~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~   81 (98)
T 1iue_A            2 FYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYP   81 (98)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred             cEEEEEEeCCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEE
Confidence            46788854555458999999999999999999999999999999999999999998888888998888899999999999


Q ss_pred             CCCeEEEcCCccccc
Q 032269          129 TSDVTIETHKEEELA  143 (144)
Q Consensus       129 ~~dl~I~~~~~~~~~  143 (144)
                      .+|++|++++++++|
T Consensus        82 ~~d~~i~~~~~~~~~   96 (98)
T 1iue_A           82 KSDCVIETHKEDELH   96 (98)
T ss_dssp             SSCEEEECCCHHHHH
T ss_pred             CCCeEEEeCChHhhc
Confidence            999999999887765

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1

Probab=99.93  E-value=8.7e-26  Score=154.17  Aligned_cols=94  Identities=54%  Similarity=1.002  Sum_probs=85.0

Q ss_pred             ceEEEEEcCCC--eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeec
Q 032269           49 TYKVKLITPGG--EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAA  126 (144)
Q Consensus        49 ~~~V~i~~~~g--~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  126 (144)
                      .++|+|..+++  .++|++++|+|||++++++|+++|+.|+.|.||+|+|+|++|.+.+.+...|++++.++|+||+||+
T Consensus         2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~   81 (98)
T 1frd_A            2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred             ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence            47888864453  4589999999999999999999999999999999999999999988888889988888999999999


Q ss_pred             eECCCeEEEcCCcccc
Q 032269          127 YPTSDVTIETHKEEEL  142 (144)
Q Consensus       127 ~~~~dl~I~~~~~~~~  142 (144)
                      ++.+|++|++++++++
T Consensus        82 ~~~~d~~v~~~~~~~~   97 (98)
T 1frd_A           82 YPRSNCTIKTHQEPYL   97 (98)
T ss_dssp             EESSSEEEECCCGGGC
T ss_pred             EECCCEEEEecchhhc
Confidence            9999999999988765

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.93  E-value=8.3e-26  Score=153.24  Aligned_cols=92  Identities=60%  Similarity=0.992  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      ++|+|..+++.++|++++|+|||++++++| .+++.|+.|.||+|+|+|++|.+.+.+...|++++.++|+||+||++|.
T Consensus         2 ~~V~~~~~~~~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~   80 (93)
T 1wri_A            2 YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPE   80 (93)
T ss_dssp             EEEEEEETTEEEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred             EEEEEEECCCeEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEEC
Confidence            678885466545899999999999999999 9999999999999999999999998888889988888999999999999


Q ss_pred             CCeEEEcCCcccc
Q 032269          130 SDVTIETHKEEEL  142 (144)
Q Consensus       130 ~dl~I~~~~~~~~  142 (144)
                      +|++|++++++++
T Consensus        81 ~d~~v~~~~~~~~   93 (93)
T 1wri_A           81 SDVVIETHKEDEL   93 (93)
T ss_dssp             SCEEEECCCGGGC
T ss_pred             CCEEEEecccccC
Confidence            9999999987764

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A

Probab=99.91  E-value=3.2e-25  Score=159.01  Aligned_cols=111  Identities=27%  Similarity=0.461  Sum_probs=89.1

Q ss_pred             CCceeeeccCCcCCCCcccc-ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccC
Q 032269           27 PNMGQAIFGLKANRGGRVVA-MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ  105 (144)
Q Consensus        27 ~~i~~e~F~~~~~~~~~~~~-m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~  105 (144)
                      ..+|||.|+...-....-.+ ..+++|+| ..+|..++++++|+|||++++++|+++|++|+.|.||+|+++|++|.+.+
T Consensus         4 ~~~~~e~~~~~~~~~~~~~~f~~m~~i~i-~~~g~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~   82 (128)
T 1doi_A            4 EYLNYEVVDDNGWDMYDDDVFGEASDMDL-DDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDM   82 (128)
T ss_dssp             EEEEHHHHHHHTCCTTTSCHHHHHHHSCC-CTTTEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEE
T ss_pred             eEEEEEEecccccccccccccccccEEEE-EeCCcEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCc
Confidence            45899999766543322110 01355666 55674379999999999999999999999999999999999999999988


Q ss_pred             CcCCCCCccc-cCCCeEEeeeceECCC-eEEEcCC
Q 032269          106 SEQSFLDDDQ-MGEGFVLTCAAYPTSD-VTIETHK  138 (144)
Q Consensus       106 ~e~~~L~~~~-~~~g~rLaCq~~~~~d-l~I~~~~  138 (144)
                      .+...|++++ .++|+||+||++|.+| ++|+...
T Consensus        83 ~e~~~L~~~e~~~~g~rLaCq~~~~~d~i~i~~~~  117 (128)
T 1doi_A           83 DMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNA  117 (128)
T ss_dssp             CCCSSSCHHHHHTSCEEEGGGEEECSSEEEEEECG
T ss_pred             hhhccCCHhHhccCCEEEEEEeEEcCCeEEEEecC
Confidence            8777898755 6899999999999999 8887544

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=99.90  E-value=1e-24  Score=148.95  Aligned_cols=91  Identities=29%  Similarity=0.528  Sum_probs=79.4

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccC--CcCCCCCccccCCCeEEeee
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ--SEQSFLDDDQMGEGFVLTCA  125 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~--~e~~~L~~~~~~~g~rLaCq  125 (144)
                      +++|+|..+++ .++|++++|+|||++++++|+.+++.|+.|.||+|+|+|++|.+++  .+...|+++++++|+||+||
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq   83 (98)
T 1jq4_A            4 VHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCR   83 (98)
T ss_dssp             EEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTT
T ss_pred             cEEEEEEecCCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEee
Confidence            57888843222 3589999999999999999999999999999999999999999875  46667888888889999999


Q ss_pred             ceECCCeEEEcCCc
Q 032269          126 AYPTSDVTIETHKE  139 (144)
Q Consensus       126 ~~~~~dl~I~~~~~  139 (144)
                      +++.+|++|+++.+
T Consensus        84 ~~~~~d~~v~~~~~   97 (98)
T 1jq4_A           84 TYPKTDLEIELPYT   97 (98)
T ss_dssp             CCSSCCSEEECSCC
T ss_pred             CEECCCEEEEecCC
Confidence            99999999998764

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0

Probab=99.89  E-value=4.8e-24  Score=147.61  Aligned_cols=90  Identities=24%  Similarity=0.434  Sum_probs=78.3

Q ss_pred             EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccC------CcCCCCCc-cccCCCe
Q 032269           51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDD-DQMGEGF  120 (144)
Q Consensus        51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~~g~  120 (144)
                      +|+|+.++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|+++.      .+...|+. +++++|+
T Consensus         2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g~   81 (104)
T 3lxf_A            2 AILVTTRDGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHS   81 (104)
T ss_dssp             EEEEECTTSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTE
T ss_pred             EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCCc
Confidence            688877777 4689999999999999999999 999999 999999999999997653      23445776 6788999


Q ss_pred             EEeeeceECCC---eEEEcCCcc
Q 032269          121 VLTCAAYPTSD---VTIETHKEE  140 (144)
Q Consensus       121 rLaCq~~~~~d---l~I~~~~~~  140 (144)
                      ||+||+++.+|   ++|++|+++
T Consensus        82 rLaCq~~~~~dl~gl~v~ip~~~  104 (104)
T 3lxf_A           82 RLSCQITINDKLEGLEVEIAPED  104 (104)
T ss_dssp             EEGGGCBCCGGGTTCEEEECCCC
T ss_pred             EEEeeCEEccCCCCEEEEecCCC
Confidence            99999999999   999998763

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=99.89  E-value=1.1e-23  Score=150.61  Aligned_cols=94  Identities=17%  Similarity=0.341  Sum_probs=80.6

Q ss_pred             ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCccc------CCcCCCCC-cccc
Q 032269           47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVD------QSEQSFLD-DDQM  116 (144)
Q Consensus        47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~------~~e~~~L~-~~~~  116 (144)
                      ..|++|+|+.++| +++|++++|+|||++++++||+ +++.|+ .|.||+|+|+|++|+++      ..|...|+ .+++
T Consensus        19 ~~M~~Vt~~~~~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e~   98 (126)
T 3hui_A           19 SHMAKINFVDHTGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV   98 (126)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSSC
T ss_pred             CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhhc
Confidence            3578999965777 3589999999999999999999 999998 99999999999999743      22445677 4678


Q ss_pred             CCCeEEeeeceECCC---eEEEcCCcc
Q 032269          117 GEGFVLTCAAYPTSD---VTIETHKEE  140 (144)
Q Consensus       117 ~~g~rLaCq~~~~~d---l~I~~~~~~  140 (144)
                      ++||||+||+++.+|   ++|++|+.+
T Consensus        99 ~~g~RLaCQ~~~~~dldgl~V~lp~~~  125 (126)
T 3hui_A           99 RPNSRLSCQIKVSNELDGLIVTTPERQ  125 (126)
T ss_dssp             CTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cCCeEEeeeCEECcCCCcEEEEecCcC
Confidence            899999999999999   999999865

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}

Probab=99.88  E-value=4.4e-23  Score=144.25  Aligned_cols=91  Identities=23%  Similarity=0.383  Sum_probs=75.1

Q ss_pred             eEEEEEcC-----CCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC-----cCCCCCcc-ccC
Q 032269           50 YKVKLITP-----GGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS-----EQSFLDDD-QMG  117 (144)
Q Consensus        50 ~~V~i~~~-----~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~-----e~~~L~~~-~~~  117 (144)
                      ++|+|+..     ++ ++|++++|+|||++++++|++|++.|+ .|.||+|+|+|++|.....     +...|+.+ +++
T Consensus         2 ~~vt~~~~~g~~~~~-~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~   80 (113)
T 3ah7_A            2 PLVTFLPHEKFCPEG-LTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLE   80 (113)
T ss_dssp             CEEEECCBTTTBTTC-EEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCC
T ss_pred             CEEEEEcCCCcCCCC-eEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccC
Confidence            57888543     34 489999999999999999999999998 7999999999999974431     23456654 678


Q ss_pred             CCeEEeeeceEC-CCeEEEcCCccc
Q 032269          118 EGFVLTCAAYPT-SDVTIETHKEEE  141 (144)
Q Consensus       118 ~g~rLaCq~~~~-~dl~I~~~~~~~  141 (144)
                      +|+||+||+++. +|++|+++.++.
T Consensus        81 ~g~rLaCq~~~~~~dl~v~~~~~~~  105 (113)
T 3ah7_A           81 AQSRLGCQVFVADEDLTIEIPKYSL  105 (113)
T ss_dssp             TTEEEGGGCBCCSSCEEEECCSCCC
T ss_pred             CCcEEeeeCEEeCCCEEEEECchhh
Confidence            899999999998 899999987543

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=99.88  E-value=1.6e-23  Score=145.75  Aligned_cols=92  Identities=24%  Similarity=0.346  Sum_probs=76.8

Q ss_pred             ceEEEEEcCCCe-EEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccC------CcCCCCCc-cccCCC
Q 032269           49 TYKVKLITPGGE-EEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDD-DQMGEG  119 (144)
Q Consensus        49 ~~~V~i~~~~g~-~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~~g  119 (144)
                      +++|+|+.++|. ++|++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|+++.      .|...|+. .++++|
T Consensus         5 m~~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g   84 (109)
T 2y5c_A            5 VVNVVFVDRSGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQEN   84 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCTT
T ss_pred             cEEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCCC
Confidence            578999666774 469999999999999999999999999 599999999999996443      13345653 567899


Q ss_pred             eEEeeeceECCC---eEEEcCCcc
Q 032269          120 FVLTCAAYPTSD---VTIETHKEE  140 (144)
Q Consensus       120 ~rLaCq~~~~~d---l~I~~~~~~  140 (144)
                      +||+||+++.+|   ++|++++..
T Consensus        85 ~rLaCq~~~~~d~~~~~v~ip~~~  108 (109)
T 2y5c_A           85 SRLGCQIVLTPELEGAEFTLPKIT  108 (109)
T ss_dssp             EEEGGGCBCCGGGTTCEEECCSCC
T ss_pred             cEeeEEeEEecCCCeEEEEecCCC
Confidence            999999999997   999998753

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A

Probab=99.88  E-value=3.7e-23  Score=143.01  Aligned_cols=90  Identities=20%  Similarity=0.381  Sum_probs=74.8

Q ss_pred             EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCccc------CCcCCCCCccc-c-CCC
Q 032269           51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVD------QSEQSFLDDDQ-M-GEG  119 (144)
Q Consensus        51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~------~~e~~~L~~~~-~-~~g  119 (144)
                      +|+|+.++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|.++      ..+...|+..+ . ++|
T Consensus         2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (106)
T 1xlq_A            2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence            677855666 3589999999999999999999 999996 89999999999999433      23445677654 6 889


Q ss_pred             eEEeeeceECC---CeEEEcCCcc
Q 032269          120 FVLTCAAYPTS---DVTIETHKEE  140 (144)
Q Consensus       120 ~rLaCq~~~~~---dl~I~~~~~~  140 (144)
                      +||+||+++.+   |++|++++.+
T Consensus        82 ~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1xlq_A           82 SRLCCQIIMTPELDGIVVDVPDRQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEeeeeeEeecCCCCEEEEecCcc
Confidence            99999999998   6899998754

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A

Probab=99.87  E-value=4.3e-23  Score=142.67  Aligned_cols=90  Identities=26%  Similarity=0.438  Sum_probs=75.2

Q ss_pred             EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccC------CcCCCCCcc-ccC-CC
Q 032269           51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDDD-QMG-EG  119 (144)
Q Consensus        51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~~-~~~-~g  119 (144)
                      +|+|+.++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|++|+++.      .+...|+.. +++ +|
T Consensus         2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (106)
T 1uwm_A            2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT   81 (106)
T ss_dssp             EEEEECTTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCCC
Confidence            678855666 2589999999999999999999 999996 899999999999995432      244467765 677 89


Q ss_pred             eEEeeeceECC---CeEEEcCCcc
Q 032269          120 FVLTCAAYPTS---DVTIETHKEE  140 (144)
Q Consensus       120 ~rLaCq~~~~~---dl~I~~~~~~  140 (144)
                      +||+||+++.+   |++|+++.++
T Consensus        82 ~rLaCq~~~~~d~~~l~v~~p~~~  105 (106)
T 1uwm_A           82 SRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEecccCEEccCCCCEEEEecCCC
Confidence            99999999999   5999998754

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1

Probab=99.87  E-value=1.4e-23  Score=144.93  Aligned_cols=89  Identities=17%  Similarity=0.416  Sum_probs=75.3

Q ss_pred             EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCc------ccCCcCCCCC--ccccCCC
Q 032269           51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGT------VDQSEQSFLD--DDQMGEG  119 (144)
Q Consensus        51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~------~~~~e~~~L~--~~~~~~g  119 (144)
                      +|+|+.++| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|+      +...+...|+  ..++++|
T Consensus         2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~g   81 (105)
T 1b9r_A            2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAG   81 (105)
T ss_dssp             EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTT
T ss_pred             EEEEEeCCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCC
Confidence            677854566 3589999999999999999999 999999 799999999999994      3334555676  5778899


Q ss_pred             eEEeeeceECC---CeEEEcCCc
Q 032269          120 FVLTCAAYPTS---DVTIETHKE  139 (144)
Q Consensus       120 ~rLaCq~~~~~---dl~I~~~~~  139 (144)
                      +||+||+++.+   |++|++++.
T Consensus        82 ~rLaCq~~~~~~~~~l~v~~p~~  104 (105)
T 1b9r_A           82 TRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             BSCGGGCCCCTTSTTEEEECCSC
T ss_pred             cEeeeeCEecCCCCcEEEEecCC
Confidence            99999999999   799999864

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=99.87  E-value=4.1e-23  Score=143.34  Aligned_cols=89  Identities=21%  Similarity=0.312  Sum_probs=74.4

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCC--CCCC-CcccccCEEEEeeCcccC------CcCCCCCc-cccC
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLP--YSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDD-DQMG  117 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~--~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~~~  117 (144)
                      |++|+|+.++| .++|++++|+|||++++++||+|+  +.|+ .|.||+|+|+|.+|.++.      .|...|+. .+++
T Consensus         6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~   85 (108)
T 2bt6_A            6 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT   85 (108)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccCC
Confidence            57899964666 457999999999999999999999  9998 699999999999995442      23445664 6688


Q ss_pred             CCeEEeeeceECC---CeEEEcC
Q 032269          118 EGFVLTCAAYPTS---DVTIETH  137 (144)
Q Consensus       118 ~g~rLaCq~~~~~---dl~I~~~  137 (144)
                      +|+||+||+++.+   |++|++|
T Consensus        86 ~g~rLaCq~~~~~d~d~~~V~~p  108 (108)
T 2bt6_A           86 DRSRLGCQICLTKAMDNMTVRVP  108 (108)
T ss_dssp             TTEEEGGGCBCCGGGTTEEEECC
T ss_pred             CCcEeeEEEEecCCCCCEEEEcC
Confidence            9999999999998   5999875

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=99.86  E-value=3.6e-22  Score=137.36  Aligned_cols=89  Identities=29%  Similarity=0.394  Sum_probs=74.7

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC------cCCCCCc-cccCCC
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS------EQSFLDD-DQMGEG  119 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~~-~~~~~g  119 (144)
                      +++|+|..++| .++|++++|+|||++++++|+++++.|+ .|.||+|+|+|.+|++++.      |...|+. .+.++|
T Consensus         3 ~~~v~~~~~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~g   82 (103)
T 2wlb_A            3 GIKVFFVTPEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEET   82 (103)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCTT
T ss_pred             ceEEEEEeCCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCCC
Confidence            46889853566 3589999999999999999999999999 8999999999999976542      2235665 457889


Q ss_pred             eEEeeeceECCC---eEEEcC
Q 032269          120 FVLTCAAYPTSD---VTIETH  137 (144)
Q Consensus       120 ~rLaCq~~~~~d---l~I~~~  137 (144)
                      +||+||+++.+|   ++|++|
T Consensus        83 ~rLaCq~~~~~d~~~l~v~lp  103 (103)
T 2wlb_A           83 SRLGCQVLLRKDLDGIRVRIP  103 (103)
T ss_dssp             EEEGGGCBCCGGGTTEEEECC
T ss_pred             cEeeEeeEeCCCCCcEEEEcC
Confidence            999999999999   999875

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1

Probab=99.85  E-value=1.2e-21  Score=136.61  Aligned_cols=91  Identities=25%  Similarity=0.425  Sum_probs=73.5

Q ss_pred             eEEEEEcC-----CCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCCc-----CCCCCcc-ccC
Q 032269           50 YKVKLITP-----GGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQSE-----QSFLDDD-QMG  117 (144)
Q Consensus        50 ~~V~i~~~-----~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e-----~~~L~~~-~~~  117 (144)
                      ++|+|+.+     ++ ++|++++|+|||++++++|+.+++.|+ .|.||+|+|+|.+|.+.+..     ...|+.. +..
T Consensus         2 ~~i~~~~~~g~~~~~-~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~   80 (111)
T 1i7h_A            2 PKIVILPHQDLCPDG-AVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLE   80 (111)
T ss_dssp             CEEEECCBTTTBTTC-EEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCC
T ss_pred             CEEEEEeCCCcCCCC-eEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccC
Confidence            47777543     34 489999999999999999999999995 99999999999999876542     2234332 466


Q ss_pred             CCeEEeeeceEC-CCeEEEcCCccc
Q 032269          118 EGFVLTCAAYPT-SDVTIETHKEEE  141 (144)
Q Consensus       118 ~g~rLaCq~~~~-~dl~I~~~~~~~  141 (144)
                      +++||+||+++. +|++|+++.++.
T Consensus        81 ~g~rLaCq~~~~~~dl~v~~~~~~~  105 (111)
T 1i7h_A           81 PESRLSCQARVTDEDLVVEIPRYTI  105 (111)
T ss_dssp             TTEEETTTCBCCSSCEEEECCSCCC
T ss_pred             CCcEEEEEEEEeCCCEEEEEChHHh
Confidence            899999999995 899999987543

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.85  E-value=1.6e-21  Score=157.35  Aligned_cols=93  Identities=28%  Similarity=0.507  Sum_probs=81.0

Q ss_pred             ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccC----CcCCCCCccccCCCeE
Q 032269           47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ----SEQSFLDDDQMGEGFV  121 (144)
Q Consensus        47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~----~e~~~L~~~~~~~g~r  121 (144)
                      |++++|+|...++ .+++++++|+|||++++++|+++++.|+.|.||+|+|+|++|++..    .+...|+++++++|+|
T Consensus         1 m~~~~v~~~~~~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~   80 (338)
T 1krh_A            1 MSNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYV   80 (338)
T ss_dssp             -CCEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEE
T ss_pred             CCceEEEEEEcCCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeE
Confidence            4578899953332 3589999999999999999999999999999999999999998875    3667889888999999


Q ss_pred             EeeeceECCCeEEEcCCc
Q 032269          122 LTCAAYPTSDVTIETHKE  139 (144)
Q Consensus       122 LaCq~~~~~dl~I~~~~~  139 (144)
                      |+||+++.+|++|+++.+
T Consensus        81 LaCq~~~~~~~~v~~~~~   98 (338)
T 1krh_A           81 LACQCRPTSDAVFQIQAS   98 (338)
T ss_dssp             ETTTCEESSSEEEEESSC
T ss_pred             EEEeCEECCCeEEEEecc
Confidence            999999999999999775

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=99.85  E-value=1e-21  Score=171.24  Aligned_cols=94  Identities=32%  Similarity=0.660  Sum_probs=85.9

Q ss_pred             ccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeee
Q 032269           47 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCA  125 (144)
Q Consensus        47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq  125 (144)
                      |.|++|+| .++++ ++++++|+|||++++++|++++++|+ .|.||+|+++|++|++++.+...|+++++++|+||+||
T Consensus         1 M~m~~V~~-~~sg~-~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaCq   78 (631)
T 3zyy_X            1 MAEYKVLF-KPDQK-EVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQ   78 (631)
T ss_dssp             --CEEEEE-ETTTE-EEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETTT
T ss_pred             CCceEEEE-ecCCe-EEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEeee
Confidence            56899999 67775 89999999999999999999999999 99999999999999999888888998889999999999


Q ss_pred             ceECCCeEEEcCCcccc
Q 032269          126 AYPTSDVTIETHKEEEL  142 (144)
Q Consensus       126 ~~~~~dl~I~~~~~~~~  142 (144)
                      +++.+|++|++++++++
T Consensus        79 a~~~sDl~Ielp~~~~~   95 (631)
T 3zyy_X           79 TYPESDLIIEIPFDSRL   95 (631)
T ss_dssp             EEECSSEEEECCTTSSC
T ss_pred             CEECCCEEEEecchhhh
Confidence            99999999999987653

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1

Probab=99.82  E-value=1.3e-20  Score=127.54  Aligned_cols=81  Identities=30%  Similarity=0.540  Sum_probs=66.9

Q ss_pred             EEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccCC---cCCCCCccccCCCeEEeee
Q 032269           52 VKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQS---EQSFLDDDQMGEGFVLTCA  125 (144)
Q Consensus        52 V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~---e~~~L~~~~~~~g~rLaCq  125 (144)
                      |+| ..+| .++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|.+...   +...|+  +.++++||+||
T Consensus         3 v~i-~~~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLaCq   79 (93)
T 1l5p_A            3 ITA-VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLACA   79 (93)
T ss_dssp             EEE-EETTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEGGG
T ss_pred             EEE-EeCCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEeeE
Confidence            444 2345 3579999999999999999999 999999 9999999999999987632   344566  67889999999


Q ss_pred             ceECCC---eEEE
Q 032269          126 AYPTSD---VTIE  135 (144)
Q Consensus       126 ~~~~~d---l~I~  135 (144)
                      +++.+|   ++|+
T Consensus        80 ~~~~~d~~g~~v~   92 (93)
T 1l5p_A           80 ITLSGENDGAVFE   92 (93)
T ss_dssp             CEECGGGTTCEEE
T ss_pred             CEECCCCCceEEE
Confidence            999987   4554

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A

Probab=99.80  E-value=1.4e-21  Score=139.18  Aligned_cols=94  Identities=21%  Similarity=0.292  Sum_probs=20.2

Q ss_pred             ccceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCC--CCCC-CcccccCEEEEeeCcccC------CcCCCCCc-cc
Q 032269           47 MATYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLP--YSCR-AGACSSCTGKVVSGTVDQ------SEQSFLDD-DQ  115 (144)
Q Consensus        47 m~~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~--~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L~~-~~  115 (144)
                      +.+++|+|+.++| .++|++++|+|||++++++||+++  +.|+ .|.||+|+|+|.+|....      .|...|+. .+
T Consensus         3 ~~~v~Vtf~~~~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~   82 (123)
T 3n9z_C            3 EDKITVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG   82 (123)
T ss_dssp             ----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC---
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhccccc
Confidence            3568899976766 457999999999999999999999  9998 899999999999754321      23445653 46


Q ss_pred             cCCCeEEeeeceECC---CeEEEcCCcc
Q 032269          116 MGEGFVLTCAAYPTS---DVTIETHKEE  140 (144)
Q Consensus       116 ~~~g~rLaCq~~~~~---dl~I~~~~~~  140 (144)
                      +.+++||+||+++.+   |++|++|+..
T Consensus        83 ~~~~~RLaCQ~~v~~~ld~l~V~ip~~~  110 (123)
T 3n9z_C           83 LTDRSRLGCQICLTKSMDNMTVRVPETV  110 (123)
T ss_dssp             -----CBCC-------------------
T ss_pred             ccCCeEEeeEeEEccCCCCEEEEECccc
Confidence            778999999999998   7999998753

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*

Probab=99.06  E-value=2.1e-10  Score=102.22  Aligned_cols=86  Identities=21%  Similarity=0.448  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCC------CCcccccCEEEEeeCcccCCcCCCCCcc-----ccCC
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSC------RAGACSSCTGKVVSGTVDQSEQSFLDDD-----QMGE  118 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C------~~G~CgtC~v~v~~G~~~~~e~~~L~~~-----~~~~  118 (144)
                      ++|+|   +|+ ++++++|+|||+|++++|+.||+.|      ..|.|+.|.|+|..+..+......++++     +...
T Consensus         2 v~i~i---dg~-~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~   77 (783)
T 3i9v_3            2 VRVKV---NDR-IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQP   77 (783)
T ss_dssp             EEEEC---SSC-EEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCS
T ss_pred             eEEEE---CCE-EEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCC
Confidence            56676   575 7999999999999999999999999      5899999999995322111111111111     1134


Q ss_pred             CeEEeeeceECCCeEEEcCCc
Q 032269          119 GFVLTCAAYPTSDVTIETHKE  139 (144)
Q Consensus       119 g~rLaCq~~~~~dl~I~~~~~  139 (144)
                      +.++||++.+..+|+|++.++
T Consensus        78 ~~~~aC~t~v~~gm~v~t~~~   98 (783)
T 3i9v_3           78 KLAASCVTAVADGMVVDTLSD   98 (783)
T ss_dssp             SCEETTTCBCCSSEEEESSSH
T ss_pred             CcccccCCCCCCCCEEEECCH
Confidence            679999999999999998764

>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2

Probab=98.91  E-value=2.7e-09  Score=79.13  Aligned_cols=67  Identities=25%  Similarity=0.472  Sum_probs=52.1

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CCC-CCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeee
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEA-GLD-LPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCA  125 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi~-i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq  125 (144)
                      +++++|   +| .+++++++|+|||++++++ |+. ++++|+.|.||+|.|.| +|.                 .++||.
T Consensus        11 ~i~~~i---ng~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~   69 (168)
T 1t3q_A           11 RISATI---NGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCL   69 (168)
T ss_dssp             EEEEEE---TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGG
T ss_pred             eEEEEE---CCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------Eeechh
Confidence            356666   34 3567789999999999996 997 89999999999999999 542                 377888


Q ss_pred             ceECC--CeEEEc
Q 032269          126 AYPTS--DVTIET  136 (144)
Q Consensus       126 ~~~~~--dl~I~~  136 (144)
                      +.+..  +..|.+
T Consensus        70 ~~~~~~~G~~v~T   82 (168)
T 1t3q_A           70 TLAVQAEGCSIET   82 (168)
T ss_dssp             SBGGGGTTCEEEC
T ss_pred             hHHHHhCCCeEEE
Confidence            87765  555544

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*

Probab=98.81  E-value=7.6e-09  Score=89.45  Aligned_cols=69  Identities=26%  Similarity=0.509  Sum_probs=58.5

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-------CcccccCEEEEeeCcccCCcCCCCCccccCCCeEE
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVL  122 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rL  122 (144)
                      ++|+|   +|+ .+++++|+|||++++++|+.+|+.|+       .|.||.|.|+| +|.               . .++
T Consensus         2 v~~~i---ng~-~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~   60 (574)
T 3c8y_A            2 KTIII---NGV-QFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVT   60 (574)
T ss_dssp             EEEEE---TTE-EEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEE
T ss_pred             eEEEE---CCE-EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-ccc
Confidence            45666   675 79999999999999999999999998       88999999998 221               2 689


Q ss_pred             eeeceECCCeEEEcCCc
Q 032269          123 TCAAYPTSDVTIETHKE  139 (144)
Q Consensus       123 aCq~~~~~dl~I~~~~~  139 (144)
                      ||++.+.++++|.+.++
T Consensus        61 aC~t~v~~gm~V~T~~~   77 (574)
T 3c8y_A           61 ACDTLIEDGMIINTNSD   77 (574)
T ss_dssp             GGGCBCCTTCEEESSCH
T ss_pred             cCCCCcccceeEEecch
Confidence            99999999999987653

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*

Probab=98.73  E-value=1.6e-08  Score=78.22  Aligned_cols=58  Identities=24%  Similarity=0.398  Sum_probs=48.4

Q ss_pred             EEEEcCCchhHHHHHHHcCC------CCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECCC---
Q 032269           61 EEINCPDDSFILDAAEEAGL------DLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSD---  131 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~Gi------~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~d---  131 (144)
                      +++++++|+|||++|++.|+      ...++|+.|.||+|.|+| +|.                 .+|||++.+...   
T Consensus        26 ~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~~   87 (243)
T 1kf6_B           26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTDG   87 (243)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTTC
T ss_pred             EEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCCc
Confidence            57888999999999999983      467789999999999996 553                 388999998877   


Q ss_pred             eEEEc
Q 032269          132 VTIET  136 (144)
Q Consensus       132 l~I~~  136 (144)
                      ++|+-
T Consensus        88 ~~i~~   92 (243)
T 1kf6_B           88 MKVEA   92 (243)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            88864

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*

Probab=98.53  E-value=8e-08  Score=74.23  Aligned_cols=58  Identities=24%  Similarity=0.466  Sum_probs=45.3

Q ss_pred             EEEEcCCchhHHHHHHHcC------CCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECC---C
Q 032269           61 EEINCPDDSFILDAAEEAG------LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTS---D  131 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~~G------i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~---d  131 (144)
                      +++++++|+|||++|++.|      +...++|+.|.||+|.|+| +|..                 +|||++.+..   +
T Consensus        26 ~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~-----------------~~aC~~~~~~~~g~   87 (241)
T 2bs2_B           26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP-----------------SLACRTLTKDFEDG   87 (241)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE-----------------EEGGGCBGGGCTTS
T ss_pred             EEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe-----------------ecchhCcHhHcCCC
Confidence            4688899999999999864      4566799999999999999 6643                 4788887754   3


Q ss_pred             -eEEEc
Q 032269          132 -VTIET  136 (144)
Q Consensus       132 -l~I~~  136 (144)
                       ++|+.
T Consensus        88 ~~~ie~   93 (241)
T 2bs2_B           88 VITLLP   93 (241)
T ss_dssp             EEEEEC
T ss_pred             eEEEec
Confidence             55553

>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*

Probab=98.51  E-value=3.1e-07  Score=67.85  Aligned_cols=46  Identities=20%  Similarity=0.473  Sum_probs=37.5

Q ss_pred             eEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           50 YKVKLITPGG-EEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      ++++|   || .+++++++++|||+++++. |+ ..+++|+.|.||.|.|.|
T Consensus         6 i~~~v---NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v   54 (163)
T 1ffv_A            6 ITVNV---NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI   54 (163)
T ss_dssp             EEEEE---TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred             EEEEE---CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE
Confidence            44555   45 4567889999999999984 65 478999999999999998

>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*

Probab=98.50  E-value=2.6e-07  Score=68.05  Aligned_cols=65  Identities=29%  Similarity=0.561  Sum_probs=49.2

Q ss_pred             eEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeec
Q 032269           50 YKVKLITPGG-EEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAA  126 (144)
Q Consensus        50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  126 (144)
                      ++++|   || .+++++++++|||+++++. |+ ..+++|+.|.||.|.|.| +|.                 .++||++
T Consensus         5 i~~~v---NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~   63 (161)
T 1rm6_C            5 LRLTL---NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACST   63 (161)
T ss_dssp             EEEEE---TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred             EEEEE---CCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHH
Confidence            45555   45 4556778999999999986 76 588999999999999998 442                 4788888


Q ss_pred             eECC--CeEEE
Q 032269          127 YPTS--DVTIE  135 (144)
Q Consensus       127 ~~~~--dl~I~  135 (144)
                      .+..  +..|.
T Consensus        64 ~~~~~~G~~v~   74 (161)
T 1rm6_C           64 LAHQVAGKKVE   74 (161)
T ss_dssp             BGGGGTTSEEE
T ss_pred             HHHHhCCceEE
Confidence            7754  54444

>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}

Probab=98.44  E-value=3.7e-07  Score=67.25  Aligned_cols=47  Identities=28%  Similarity=0.524  Sum_probs=38.5

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      ++++|  ++..+++++++++|||+++++. |+ ..+++|+.|.||.|.|.|
T Consensus         6 i~~~v--NG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v   54 (160)
T 3hrd_D            6 INLNL--NGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF   54 (160)
T ss_dssp             EEEEE--TTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE
T ss_pred             EEEEE--CCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE
Confidence            44444  3334578899999999999986 87 589999999999999998

>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*

Probab=98.38  E-value=6.9e-07  Score=66.13  Aligned_cols=46  Identities=17%  Similarity=0.419  Sum_probs=37.4

Q ss_pred             eEEEEEcCCC-eEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           50 YKVKLITPGG-EEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        50 ~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      ++++|   || .+++++++++|||+++++. |+ ..+++|+.|.||.|.|.|
T Consensus         6 i~~~v---NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v   54 (166)
T 1n62_A            6 IELTI---NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL   54 (166)
T ss_dssp             EEEEE---TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred             EEEEE---CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE
Confidence            44555   45 4567889999999999984 66 468999999999999998

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*

Probab=98.34  E-value=4.3e-07  Score=69.87  Aligned_cols=52  Identities=27%  Similarity=0.440  Sum_probs=42.1

Q ss_pred             EEEEcCC--chhHHHHHHHcC-----CCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECC
Q 032269           61 EEINCPD--DSFILDAAEEAG-----LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTS  130 (144)
Q Consensus        61 ~~i~v~~--g~tLL~a~~~~G-----i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~  130 (144)
                      +++++++  |+|||++|++.+     +...++|+.|.||+|.|+| +|.                 .+|||++.+..
T Consensus        23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~   81 (238)
T 2wdq_B           23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK-----------------NGLACITPISA   81 (238)
T ss_dssp             EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE-----------------EEEGGGCBGGG
T ss_pred             EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE-----------------EEcccccchhh
Confidence            4688888  999999999987     5677899999999999998 443                 25677776654

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...

Probab=98.20  E-value=1.6e-06  Score=67.56  Aligned_cols=58  Identities=28%  Similarity=0.501  Sum_probs=44.9

Q ss_pred             EEEEcCC-chhHHHHHHHcC------CCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceECC---
Q 032269           61 EEINCPD-DSFILDAAEEAG------LDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTS---  130 (144)
Q Consensus        61 ~~i~v~~-g~tLL~a~~~~G------i~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~~---  130 (144)
                      +++++++ |+|||++|++.+      +...++|+.|.||+|.|+| +|.                 .+|||++.+..   
T Consensus        33 ~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~~~g   94 (252)
T 2h88_B           33 YEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDPDLS   94 (252)
T ss_dssp             EEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCCCTT
T ss_pred             EEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhHcCC
Confidence            4677778 999999999986      2356689999999999996 443                 47888888765   


Q ss_pred             -CeEEEc
Q 032269          131 -DVTIET  136 (144)
Q Consensus       131 -dl~I~~  136 (144)
                       .++|+-
T Consensus        95 ~~~~iep  101 (252)
T 2h88_B           95 KTTKIYP  101 (252)
T ss_dssp             SCEEEEC
T ss_pred             CceEEec
Confidence             266663

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*

Probab=97.64  E-value=4e-05  Score=60.96  Aligned_cols=41  Identities=27%  Similarity=0.569  Sum_probs=32.5

Q ss_pred             EEEEcCC-chhHHHHHHHcCC------CCCCCCCCcccccCEEEEeeCc
Q 032269           61 EEINCPD-DSFILDAAEEAGL------DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        61 ~~i~v~~-g~tLL~a~~~~Gi------~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      +++++++ |+|||++|++.+.      ....+|+.|.||+|.|.| .|.
T Consensus        57 ~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~  104 (282)
T 3vr8_B           57 FDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE  104 (282)
T ss_pred             EEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence            4577777 9999999998654      345689999999999987 443

>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*

Probab=97.42  E-value=0.00015  Score=53.38  Aligned_cols=48  Identities=23%  Similarity=0.459  Sum_probs=38.7

Q ss_pred             ceEEEEEcCCCeE--EEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269           49 TYKVKLITPGGEE--EINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        49 ~~~V~i~~~~g~~--~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~   99 (144)
                      +++++|   ||+.  .++++++++||+.+++. |+ ....+|+.|.||.|-|.|-
T Consensus         4 ~i~~~v---NG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd   55 (164)
T 3nvw_A            4 ELVFFV---NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS   55 (164)
T ss_dssp             CEEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             eEEEEE---CCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence            356666   4642  35689999999999985 76 6899999999999999985

>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*

Probab=97.33  E-value=0.00031  Score=59.33  Aligned_cols=47  Identities=21%  Similarity=0.391  Sum_probs=37.7

Q ss_pred             eEEEEEcCCC-eEEE-EcCCchhHHHHHHHcCC-CCCCCCCCcccccCEEEEe
Q 032269           50 YKVKLITPGG-EEEI-NCPDDSFILDAAEEAGL-DLPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        50 ~~V~i~~~~g-~~~i-~v~~g~tLL~a~~~~Gi-~i~~~C~~G~CgtC~v~v~   99 (144)
                      +++++   || .+++ +++++++||+++++.|+ ....+|+.|.||.|-|.|-
T Consensus         3 ~~~~v---Ng~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v~   52 (462)
T 2w3s_A            3 IAFLL---NGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMIR   52 (462)
T ss_dssp             EEEEE---TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEEE
T ss_pred             EEEEE---CCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEEE
Confidence            44555   45 4556 67899999999996677 4899999999999999993

>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*

Probab=97.32  E-value=0.00034  Score=63.42  Aligned_cols=47  Identities=19%  Similarity=0.504  Sum_probs=38.3

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      +++++  ++..++++++++++||++|++. |+ ....+|+.|.||.|-|.|
T Consensus         4 ~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v   52 (907)
T 1vlb_A            4 KVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL   52 (907)
T ss_dssp             EEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred             EEEEE--CCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE
Confidence            44555  3335678889999999999984 66 689999999999999998

>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1

Probab=97.17  E-value=0.00042  Score=62.83  Aligned_cols=47  Identities=17%  Similarity=0.421  Sum_probs=38.5

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      +++++  ++..++++++++++||++|++. |+ ....+|+.|.||.|-|.|
T Consensus         4 ~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v   52 (907)
T 1dgj_A            4 KTLIV--NGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL   52 (907)
T ss_dssp             EECEE--TTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred             EEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE
Confidence            44555  3334578999999999999984 66 689999999999999988

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.93  E-value=0.0011  Score=55.42  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=34.7

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCC----CCCCC-Ccc--cccCEEEE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDL----PYSCR-AGA--CSSCTGKV   98 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i----~~~C~-~G~--CgtC~v~v   98 (144)
                      +++++|   ||+ .+++.+|+||++|++++|+++    +.. + .|.  |+.|.|+|
T Consensus        15 ~v~~~~---dg~-~~~~~~g~ti~~a~~~~g~~~~~~~~~~-~p~g~~~~~~c~v~v   66 (493)
T 1y56_A           15 KVTIYF---EGK-ELEAYEGEKLPVALLANEIYWLTTSNEG-RKRGAFTFGPVPMTV   66 (493)
T ss_dssp             EEEEEE---TTE-EEEEETTCBHHHHHHHTTCCCCEECTTS-CEECSSSSSCCEEBS
T ss_pred             eEEEEE---CCE-EEEecCCCHHHHHHHHCCCceecCCCCC-CCCccccceEEEEEE
Confidence            466666   675 799999999999999999965    222 3 455  78899976

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.64  E-value=0.022  Score=51.71  Aligned_cols=53  Identities=9%  Similarity=0.073  Sum_probs=41.8

Q ss_pred             ccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCC-----------CCCcccccCEEEEe
Q 032269           43 RVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYS-----------CRAGACSSCTGKVV   99 (144)
Q Consensus        43 ~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~-----------C~~G~CgtC~v~v~   99 (144)
                      ++..+.+++++|   +|+ .+++.+|+||+.|++.+|+.+...           |..|.|..|.+.+.
T Consensus        16 ~~~~~~~~~~~~---dG~-~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~   79 (965)
T 2gag_A           16 RINREEALSLTV---DGA-KLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS   79 (965)
T ss_dssp             SSEEEEEEEEEE---TTE-EEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred             ccCCCCeEEEEE---CCE-EEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence            444455667777   675 799999999999999999986443           45688999999996

>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*

Probab=95.57  E-value=0.013  Score=55.11  Aligned_cols=47  Identities=21%  Similarity=0.405  Sum_probs=37.1

Q ss_pred             eEEEEEcCCCe-EEE-EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269           50 YKVKLITPGGE-EEI-NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        50 ~~V~i~~~~g~-~~i-~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~   99 (144)
                      +++++   ||+ +++ .+++++|||+.+++. |+ ....+|+.|.||.|-|.|-
T Consensus         6 i~~~v---Ng~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~   56 (1332)
T 3unc_A            6 LVFFV---NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS   56 (1332)
T ss_dssp             EEEEE---TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             EEEEE---CCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence            44555   454 333 589999999999984 76 4889999999999999984

>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}

Probab=92.76  E-value=0.13  Score=48.47  Aligned_cols=35  Identities=23%  Similarity=0.471  Sum_probs=30.6

Q ss_pred             cCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEe
Q 032269           65 CPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        65 v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~   99 (144)
                      +++..|||+.++.+ ++ .-...|+.|-||.|-|-|-
T Consensus        24 ~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~   60 (1335)
T 3zyv_A           24 ADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS   60 (1335)
T ss_dssp             CCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             CCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence            67999999999984 66 4788999999999999884

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=91.41  E-value=0.026  Score=43.06  Aligned_cols=34  Identities=12%  Similarity=0.088  Sum_probs=28.7

Q ss_pred             ccccccchHHHhcCCc-ccccCCCCCceeeeccCCc
Q 032269            4 LSSAMVSTSFIRSKPT-ATSLKAMPNMGQAIFGLKA   38 (144)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~~e~F~~~~   38 (144)
                      +|||..|+..+++.+. ..+++. .+||+|.|....
T Consensus       196 ~CGP~~m~~av~~~l~~~~G~~~-~~i~~e~fw~~g  230 (252)
T 2gpj_A          196 IACEFNSMRALRRHFKQAHALPK-SHFYTSSYWKIG  230 (252)
T ss_dssp             EEEEHHHHHHHHHHHHHHCCCCG-GGEEEEEEECTT
T ss_pred             EEcCHHHHHHHHHHHHHhcCCCH-HHeEEEEEcCCC
Confidence            7999999999999887 666666 999999997544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1iuea_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite	6e-36
d1awda_	94	d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [	7e-36
d1a70a_	97	d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia	1e-35
d1czpa_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A	5e-35
d1frra_	95	d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense	1e-34
d1wria_	93	d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense	4e-34
d1krha3	104	d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,	1e-31
d1frda_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A	3e-31
d1doia_	128	d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcu	3e-28
d1jq4a_	98	d.15.4.2 (A:) Methane monooxygenase reductase N-te	3e-26
d2piaa3	98	d.15.4.2 (A:224-321) Phthalate dioxygenase reducta	8e-20
d2fug33	95	d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chai	6e-12
d1i7ha_	109	d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escheri	8e-10

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  117 bits (294), Expect = 6e-36
 Identities = 48/95 (50%), Positives = 68/95 (71%)

Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           A Y + L T  GE++I C +D +ILDA+E   ++LPYSCR G+CS+C  K+V G VD  +
Sbjct: 1   AFYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDD 60

Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           QS+LD++Q+ + ++L C  YP SD  IETHKE+EL
Sbjct: 61  QSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDEL 95

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

 Score =  117 bits (293), Expect = 7e-36
 Identities = 74/93 (79%), Positives = 80/93 (86%)

Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YKV L TP GEE I CP+D++ILDAAEEAGLDLPYSCRAGACSSC GKV SG VDQS+QS
Sbjct: 1   YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS 60

Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD QMG+GFVLTC AYPTSDVTI TH+E  L
Sbjct: 61  FLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  117 bits (293), Expect = 1e-35
 Identities = 68/96 (70%), Positives = 81/96 (84%)

Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
           A YKV L+TP G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +
Sbjct: 1   AAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDD 60

Query: 108 QSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
           QSFLDDDQ+ EG+VLTCAAYP SDVTIETHK+EEL 
Sbjct: 61  QSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEELT 96

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

 Score =  115 bits (288), Expect = 5e-35
 Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 2/97 (2%)

Query: 48  ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           AT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQ
Sbjct: 1   ATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQ 60

Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           S+QSFLDDDQ+  G+VLTC AYPTSDV I+THKEE+L
Sbjct: 61  SDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 97

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

 Score =  113 bits (285), Expect = 1e-34
 Identities = 67/93 (72%), Positives = 75/93 (80%)

Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YK  L TP GE  ++ P+ + ILDAAEEAG DLP+SCRAGACSSC GKVVSG+VD+SE S
Sbjct: 2   YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGS 61

Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD QM EGFVLTC A P SD+ IETHKEEEL
Sbjct: 62  FLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

 Score =  112 bits (282), Expect = 4e-34
 Identities = 55/93 (59%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 50  YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQS 109
           YKV L TP G+   +      ++D   E   DLP SC+AGACS+C GK+VSGTVDQSE S
Sbjct: 2   YKVTLKTPDGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGS 60

Query: 110 FLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 142
           FLDD+Q+ +G+VLTC A P SDV IETHKE+EL
Sbjct: 61  FLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} Length = 104

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

 Score =  106 bits (266), Expect = 1e-31
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 48  ATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS 106
           + ++V L    G    I       + DAA    +++P  CR G C +C     SG  D  
Sbjct: 1   SNHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMP 60

Query: 107 EQSF----LDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
           E ++    L  ++  +G+VL C   PTSD   +     E+ 
Sbjct: 61  EDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQASSEVC 101

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

 Score =  105 bits (263), Expect = 3e-31
 Identities = 53/98 (54%), Positives = 72/98 (73%), Gaps = 2/98 (2%)

Query: 48  ATYKVKLITPGGEEE--INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
           A+Y+V+LI    + +  I   +++ ILD AEE G++LP+SC +G+CSSC GKVV G VDQ
Sbjct: 1   ASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQ 60

Query: 106 SEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 143
           S+Q FLDD+QMG+GF L C  YP S+ TI+TH+E  LA
Sbjct: 61  SDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 98

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 128

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 98.8 bits (246), Expect = 3e-28
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 55  ITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDD 114
           +       +   +  +IL+AAE  G D P+SCRAGAC++C   V+ G +D   Q  L D+
Sbjct: 32  LDDEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDE 91

Query: 115 QMGE-GFVLTCAAYPTSDVTIETHKEEEL 142
           ++ +    LTC   P +D     +  + L
Sbjct: 92  EVEDKNVRLTCIGSPDADEVKIVYNAKHL 120

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

 Score = 93.1 bits (231), Expect = 3e-26
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 47  MATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQ 105
              + +  +T  GE     C  D  ++ AA    + L  SCR G C++C      G  D 
Sbjct: 2   QRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDL 61

Query: 106 SEQSF--LDDDQMGEGFVLTCAAYPTSDVTIE---TH 137
              S   L  ++  EG VL C  YP +D+ IE   TH
Sbjct: 62  KGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYTH 98

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 76.5 bits (188), Expect = 8e-20
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 48  ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE 107
             + V+L   G       P +  IL+   +A + +P SC +G C SC   + SG  D  +
Sbjct: 13  TPFTVRLSRSG--TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRD 70

Query: 108 QSFLDDDQMGEGFVLTCAAYPTSD-VTIE 135
               DD++     ++ C +   S  + ++
Sbjct: 71  MVLRDDEK--GTQIMVCVSRAKSAELVLD 97

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 56.0 bits (134), Expect = 6e-12
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 55  ITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQSEQ 108
           +       +  P  + ++DA   AG D+P  C        GAC  C  ++         +
Sbjct: 4   VKVNDRI-VEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGK 62

Query: 109 SFLDDDQMGE-----GFVLTCAAYPTSDVTIET 136
             L++    E         +C       + ++T
Sbjct: 63  PLLNEKGEPEIQWQPKLAASCVTAVADGMVVDT 95

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]} Length = 109

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

 Score = 50.8 bits (121), Expect = 8e-10
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 55  ITPGGEEEINCPDDSFILDAAEEAGLDLPYSC-RAGACSSCTGKVVSGTVDQSEQSFLDD 113
           + P G   +       ILDAA   G+++ ++C ++ AC++C   V  G     E S  +D
Sbjct: 11  LCPDGAV-LEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQED 69

Query: 114 DQMG------EGFVLTCAAYPTS-DVTIETHKE 139
           D +           L+C A  T  D+ +E  + 
Sbjct: 70  DMLDKAWGLEPESRLSCQARVTDEDLVVEIPRY 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1frra_	95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.97
d1awda_	94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	99.96
d1iuea_	98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	99.96
d1a70a_	97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	99.96
d1czpa_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.95
d1wria_	93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.95
d1frda_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.94
d1krha3	104	Benzoate dioxygenase reductase, N-terminal domain	99.94
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	99.94
d2piaa3	98	Phthalate dioxygenase reductase, C-terminal domain	99.92
d1e9ma_	106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	99.85
d1doia_	128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	99.84
d1i7ha_	109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	99.84
d2fug33	95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	99.84
d1xlqa1	106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	99.83
d1b9ra_	105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	99.82
d1l5pa_	93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	99.78
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d3c8ya2	126	Fe-only hydrogenase, N-terminal domain {Clostridiu	99.24
d1kf6b2	105	Fumarate reductase iron-sulfur protein, N-terminal	98.6
d1t3qa2	81	Quinoline 2-oxidoreductase small subunit QorS, N-d	98.47
d1vlba2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.43
d1dgja2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.34
d2bs2b2	106	Fumarate reductase iron-sulfur protein, N-terminal	98.32
d1rm6c2	81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	98.27
d1n62a2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	98.18
d1ffva2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	98.14
d1jroa2	84	Xanthine dehydrogenase chain A, N-terminal domain	98.04
d1nekb2	106	Succinate dehydogenase iron-sulfur protein, N-term	97.82
d1v97a2	90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	97.81
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	97.26

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.97  E-value=1.1e-30  Score=177.17  Aligned_cols=94  Identities=71%  Similarity=1.103  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      |+|||+.+++.++|++++|+|||++++++||++|++|+.|.||+|+++|++|++++.+...|+++++++||||+||++|.
T Consensus         2 ~kVt~~~~~~~~~~~~~~g~slLda~~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~   81 (95)
T d1frra_           2 YKTVLKTPSGEFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPE   81 (95)
T ss_dssp             EEEEEEETTEEEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred             eEEEEECCCCcEEEEECCCCcHHHHHHHcCCCEEeccCCcEeCCCEEEEecceEcccccccCCHHHHhcCcEEeeeCEEC
Confidence            78999777876689999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             CCeEEEcCCccccc
Q 032269          130 SDVTIETHKEEELA  143 (144)
Q Consensus       130 ~dl~I~~~~~~~~~  143 (144)
                      +|++|+++.++++|
T Consensus        82 ~d~~ie~~~e~~~~   95 (95)
T d1frra_          82 SDLVIETHKEEELF   95 (95)
T ss_dssp             SCEEEECCCTTTTC
T ss_pred             CCEEEEecCccccC
Confidence            99999999999987

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

Probab=99.96  E-value=4.1e-30  Score=173.95  Aligned_cols=94  Identities=79%  Similarity=1.269  Sum_probs=88.8

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      |+|||+.+++.++|++++|+|||++++++||++|++|+.|.||+|++++++|++++.+...|+++++++|++|+||++|.
T Consensus         1 fkVTl~~~~~~~~~~~~~~~slL~aa~~~Gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~   80 (94)
T d1awda_           1 YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPT   80 (94)
T ss_dssp             CEEEEEETTEEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEES
T ss_pred             CEEEEEeCCCcEEEEeCCCCcHHHHHHHcCCcEEEecCCCccCCceEEEeeceEcccccccCCHHHHhCCcEEEeeCEEC
Confidence            68888777776689999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             CCeEEEcCCccccc
Q 032269          130 SDVTIETHKEEELA  143 (144)
Q Consensus       130 ~dl~I~~~~~~~~~  143 (144)
                      +|++|++++++++|
T Consensus        81 ~D~~i~~~~~~~~~   94 (94)
T d1awda_          81 SDVTILTHQEAALY   94 (94)
T ss_dssp             SCEEEECCCGGGGC
T ss_pred             CCEEEecCChhhcC
Confidence            99999999999987

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=6.7e-30  Score=174.09  Aligned_cols=95  Identities=49%  Similarity=1.003  Sum_probs=89.2

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP  128 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  128 (144)
                      .|+|||+.+++.++|++++|+|||++++++|+.+||+|+.|.||+|+++|++|.+++.+...|++++.++||+|+||++|
T Consensus         2 ~~~VT~~~~~~~~~~~~~~getlLda~~~~gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~   81 (98)
T d1iuea_           2 FYNITLRTNDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYP   81 (98)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEE
T ss_pred             EEEEEEEeCCCeEEEEECCCCcHHHHHHHcCCCeEEcCCceEcCCCEEEEecCcCccCccccCChhHHhcCeEEecCCEE
Confidence            48999977776678999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             CCCeEEEcCCccccc
Q 032269          129 TSDVTIETHKEEELA  143 (144)
Q Consensus       129 ~~dl~I~~~~~~~~~  143 (144)
                      .+|++|+++.++++|
T Consensus        82 ~~d~~ie~~~~~~l~   96 (98)
T d1iuea_          82 KSDCVIETHKEDELH   96 (98)
T ss_dssp             SSCEEEECCCHHHHH
T ss_pred             CCCEEEEcCCccccc
Confidence            999999999998876

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.96  E-value=7.7e-30  Score=173.45  Aligned_cols=94  Identities=71%  Similarity=1.254  Sum_probs=88.5

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYP  128 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~  128 (144)
                      .|+|+|+.+++.++|++++|+|||++++++|++++++|+.|.||+|+++|++|++.+.+...|++++.++||||+||++|
T Consensus         2 ~fkVtv~~~~g~~~~~~~~g~tlL~a~~~~Gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~~~~~g~~L~C~~~~   81 (97)
T d1a70a_           2 AYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYP   81 (97)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEE
T ss_pred             cEEEEEEeCCCCEEEEeCCCchHHHHHHHcCCCeeeCCCcEEcCCCEeEeecCccccccccccChhHhcCCeEEeeeCEE
Confidence            58999988888778999999999999999999999999999999999999999999888888999889999999999999


Q ss_pred             CCCeEEEcCCcccc
Q 032269          129 TSDVTIETHKEEEL  142 (144)
Q Consensus       129 ~~dl~I~~~~~~~~  142 (144)
                      .+|++|++++++++
T Consensus        82 ~~D~~Ie~~~e~el   95 (97)
T d1a70a_          82 VSDVTIETHKKEEL   95 (97)
T ss_dssp             SSCEEEECCCGGGC
T ss_pred             CCCEEEEcCChhhc
Confidence            99999999988775

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.95  E-value=7.9e-29  Score=168.77  Aligned_cols=95  Identities=72%  Similarity=1.192  Sum_probs=87.7

Q ss_pred             ceEEEEEc-CCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeec
Q 032269           49 TYKVKLIT-PGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAA  126 (144)
Q Consensus        49 ~~~V~i~~-~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  126 (144)
                      +|+|||+. .+| .++|.+++|+|||++++++||++|++|+.|.||+|+++|++|.+++.+...|++++.++|++|+||+
T Consensus         2 t~~Vtl~~~~~g~~~~~~v~~~~slL~a~~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~   81 (98)
T d1czpa_           2 TFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVA   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred             eEEEEEEEcCCCCEEEEEeCcCChHHHHHHHcCCCeEEecCCcccCCCeeEEecccccccccccCChhHhcCCeEEeccC
Confidence            57888853 344 4689999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             eECCCeEEEcCCccccc
Q 032269          127 YPTSDVTIETHKEEELA  143 (144)
Q Consensus       127 ~~~~dl~I~~~~~~~~~  143 (144)
                      +|.+|++|+++++++||
T Consensus        82 ~~~~d~~ie~~~e~~~~   98 (98)
T d1czpa_          82 YPTSDVVIQTHKEEDLY   98 (98)
T ss_dssp             EESSCEEEECCCTTTTC
T ss_pred             EECCCEEEEcCCccccC
Confidence            99999999999999987

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.95  E-value=5.4e-28  Score=163.14  Aligned_cols=92  Identities=60%  Similarity=0.986  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      |+|||+.+++.++|.+++|+|||++++++ +.+||+|+.|.||+|+++|++|++++.+...|++++.++||+|+||++|.
T Consensus         2 ~~Vt~~~~~~~~~~~~~~~~~lLdaa~~~-~~lp~~Cr~G~CgtC~~~v~~G~v~~~~~~~L~~~e~~~g~~L~C~~~~~   80 (93)
T d1wria_           2 YKVTLKTPDGDITFDVEPGERLIDIGSEK-ADLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPE   80 (93)
T ss_dssp             EEEEEEETTEEEEEEECTTSCHHHHHHHH-SCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEES
T ss_pred             EEEEEEcCCCcEEEEeCCCCcHHHHHHhC-CCEEEEeCCcccCcCEeEeecceEeccccccCCHhHHhcCeEEeeeCEEC
Confidence            78999777776789999999999999876 59999999999999999999999999888899999999999999999999


Q ss_pred             CCeEEEcCCcccc
Q 032269          130 SDVTIETHKEEEL  142 (144)
Q Consensus       130 ~dl~I~~~~~~~~  142 (144)
                      +|++|+++.++++
T Consensus        81 sD~~ie~~~ed~v   93 (93)
T d1wria_          81 SDVVIETHKEDEL   93 (93)
T ss_dssp             SCEEEECCCGGGC
T ss_pred             CCEEEEccCcCCC
Confidence            9999999998875

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.94  E-value=3e-27  Score=160.67  Aligned_cols=94  Identities=54%  Similarity=1.006  Sum_probs=85.1

Q ss_pred             ceEEEEEcCC-C-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeec
Q 032269           49 TYKVKLITPG-G-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAA  126 (144)
Q Consensus        49 ~~~V~i~~~~-g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~  126 (144)
                      .|+|||+.+. + .++|++++|+|||++++++||+||++|+.|.||+|++++++|++.+.+...|++++.++||||+||+
T Consensus         2 s~~Vt~~~~~~~~~~ti~v~~g~siLdaa~~~Gi~i~~~C~~G~CgtC~~~v~~G~~~~~~~~~l~~~~~~~g~~L~C~~   81 (98)
T d1frda_           2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT   81 (98)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred             eEEEEEEeCCCCceEEEEeCCCChHHHHHHHcCCCEEEecCCCeeCCCEEEeccCCcccccccccChhhhcCCeEEeeeC
Confidence            5899996543 2 3579999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             eECCCeEEEcCCcccc
Q 032269          127 YPTSDVTIETHKEEEL  142 (144)
Q Consensus       127 ~~~~dl~I~~~~~~~~  142 (144)
                      +|.+|++|++++++.|
T Consensus        82 ~~~~D~~Ie~~~e~~l   97 (98)
T d1frda_          82 YPRSNCTIKTHQEPYL   97 (98)
T ss_dssp             EESSSEEEECCCGGGC
T ss_pred             EECCCEEEEeCCcccc
Confidence            9999999999887654

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

Probab=99.94  E-value=2.7e-27  Score=162.64  Aligned_cols=95  Identities=28%  Similarity=0.528  Sum_probs=84.5

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCc----CCCCCccccCCCeEEe
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSE----QSFLDDDQMGEGFVLT  123 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e----~~~L~~~~~~~g~rLa  123 (144)
                      .++|+|..++| .++|++++|+|||++++++||+||++|+.|.||+|+++|++|.+++.+    ...|+++++++||||+
T Consensus         2 ~~kVt~~f~dg~~~~~~~~~getlL~aa~~~gi~i~~~C~~G~CgtC~v~v~~G~~~~~~~~~~~~~l~~~e~~~g~~La   81 (104)
T d1krha3           2 NHQVALQFEDGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLA   81 (104)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEET
T ss_pred             ceEEEEEeCCCCEEEEEeCCCCcHHHHHHHcCCCCccccCCcccCCCEEEeeeCcccccccccccccCCHHHHhcCcEEe
Confidence            47888866676 367999999999999999999999999999999999999999987642    3568888899999999


Q ss_pred             eeceECCCeEEEcCCccccc
Q 032269          124 CAAYPTSDVTIETHKEEELA  143 (144)
Q Consensus       124 Cq~~~~~dl~I~~~~~~~~~  143 (144)
                      ||++|.+|++|+++.+.+++
T Consensus        82 Cq~~~~~d~~i~i~~~~e~~  101 (104)
T d1krha3          82 CQCRPTSDAVFQIQASSEVC  101 (104)
T ss_dssp             TTCEESSSEEEEESSCTTGG
T ss_pred             eeCEECCCEEEEecCcchhh
Confidence            99999999999999988764

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.94  E-value=9e-28  Score=163.24  Aligned_cols=93  Identities=29%  Similarity=0.523  Sum_probs=83.7

Q ss_pred             ccceEEEEEcCCCe-EEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCC--cCCCCCccccCCCeEEe
Q 032269           47 MATYKVKLITPGGE-EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQS--EQSFLDDDQMGEGFVLT  123 (144)
Q Consensus        47 m~~~~V~i~~~~g~-~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~--e~~~L~~~~~~~g~rLa  123 (144)
                      +.+++|+|+.++|+ ++|++++|+|||++|+++||++|++|+.|.||+|++++++|++++.  +...|+++++++|+||+
T Consensus         2 ~~~~tvt~i~~dG~~~~~~~~~g~slLdaa~~~Gi~i~~~C~~G~Cg~C~~~v~~G~~~~~~~~~~~L~~~e~~~g~~L~   81 (98)
T d1jq4a_           2 QRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLL   81 (98)
T ss_dssp             CCEEEEEEEETTTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCT
T ss_pred             CceEEEEEEEcCCCEEEEEeCCCchHHHHHHHcCCCeEEcCCCceeCCceEEEEECeEecCccccccCCHhHHhcCeEEe
Confidence            35789998888884 5799999999999999999999999999999999999999998875  34578998999999999


Q ss_pred             eeceECCCeEEEcCCc
Q 032269          124 CAAYPTSDVTIETHKE  139 (144)
Q Consensus       124 Cq~~~~~dl~I~~~~~  139 (144)
                      ||++|.+|++|++|..
T Consensus        82 Cq~~~~sD~~i~lp~~   97 (98)
T d1jq4a_          82 CRTYPKTDLEIELPYT   97 (98)
T ss_dssp             TTCCSSCCSEEECSCC
T ss_pred             ccCEECCCEEEEeCCC
Confidence            9999999999999853

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.92  E-value=4.8e-25  Score=149.82  Aligned_cols=96  Identities=25%  Similarity=0.574  Sum_probs=79.7

Q ss_pred             ccCCcCCCCccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCc
Q 032269           34 FGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDD  113 (144)
Q Consensus        34 F~~~~~~~~~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~  113 (144)
                      |+.+..+...   ...|+|+| .++|+ +|++++|+|||++++++|++|||+|+.|.||+|+++|++|++++.+. .+++
T Consensus         2 F~~~~~~~~~---~~~~~V~l-~~~g~-~~~v~~~~slL~aa~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~-~~~~   75 (98)
T d2piaa3           2 FGATNTNARE---NTPFTVRL-SRSGT-SFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRDM-VLRD   75 (98)
T ss_dssp             CCCCCCCCSC---CCCEEEEE-TTTCC-EEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEECCCS-SCCT
T ss_pred             cCCCCCCCCC---CCCEEEEE-eCCCE-EEEECcCCcHHHHHHhcCCcccccCCccEeCCCEEEEEeeceecCCC-CCCh
Confidence            6666644322   24689999 78886 79999999999999999999999999999999999999999987644 4555


Q ss_pred             cccCCCeEEeeeceECCC-eEEEc
Q 032269          114 DQMGEGFVLTCAAYPTSD-VTIET  136 (144)
Q Consensus       114 ~~~~~g~rLaCq~~~~~d-l~I~~  136 (144)
                      ++ +++++|+||++|.+| ++|++
T Consensus        76 ~~-~~~~~L~C~s~~~s~~lvidl   98 (98)
T d2piaa3          76 DE-KGTQIMVCVSRAKSAELVLDL   98 (98)
T ss_dssp             TT-TTTEEETTTCEESSSEEEECC
T ss_pred             HH-hCCcEEEeeCEECCCCEEEeC
Confidence            44 579999999999985 88864

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

Probab=99.85  E-value=1.5e-21  Score=133.87  Aligned_cols=90  Identities=24%  Similarity=0.392  Sum_probs=72.8

Q ss_pred             EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccCC------cCCC--CCccccCCC
Q 032269           51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQS------EQSF--LDDDQMGEG  119 (144)
Q Consensus        51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~--L~~~~~~~g  119 (144)
                      +|+|+.++| +++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|..+..      |...  ++.+...++
T Consensus         2 KIt~i~~dG~~~~i~~~~G~tLl~a~~~~gi~~i~~~CgG~g~C~tC~V~i~~g~~~~l~~~~~~E~~~L~~~~~~~~~~   81 (106)
T d1e9ma_           2 KIIFIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPAT   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTT
T ss_pred             EEEEECCCCCEEEEEECCCChHHHHHHHcCCCCcCcccccCceecceEEEeccCccccCCCCCHHHHHHHhhccccCCCc
Confidence            688877887 4679999999999999999995 999998 8999999999999965431      2222  344556679


Q ss_pred             eEEeeeceECCC---eEEEcCCcc
Q 032269          120 FVLTCAAYPTSD---VTIETHKEE  140 (144)
Q Consensus       120 ~rLaCq~~~~~d---l~I~~~~~~  140 (144)
                      +||+||+++.+|   ++|++|+++
T Consensus        82 sRLaCQ~~v~~d~~gl~V~iPe~q  105 (106)
T d1e9ma_          82 SRLTCQIKVTSLLDGLVVHLPEKQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             eEeeEeCEeccccCCEEEECCccc
Confidence            999999999765   899998653

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.84  E-value=1.2e-21  Score=138.69  Aligned_cols=109  Identities=28%  Similarity=0.486  Sum_probs=80.4

Q ss_pred             CCceeeeccCCcCCCC--ccccccceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCCCcccccCEEEEeeCccc
Q 032269           27 PNMGQAIFGLKANRGG--RVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVD  104 (144)
Q Consensus        27 ~~i~~e~F~~~~~~~~--~~~~m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~~G~CgtC~v~v~~G~~~  104 (144)
                      .++|||+|.......+  +... ....+.+...+ ..+|++++|+|||++|+++||.|||+|+.|.||+|+++|++|+++
T Consensus         4 ~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~t~~v~~g~tlLdaa~~aGi~ip~~Cr~G~CgsC~~~v~~G~~~   81 (128)
T d1doia_           4 EYLNYEVVDDNGWDMYDDDVFG-EASDMDLDDED-YGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDID   81 (128)
T ss_dssp             EEEEHHHHHHHTCCTTTSCHHH-HHHHSCCCTTT-EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEE
T ss_pred             eeeeeEeeecCCCCCCccchhh-hceeEEecCCC-ceEEEECcCChHHHHHHHcCCCCccCCCCCcCCCCceEeeeCCcc
Confidence            5678888866653221  1110 11222331222 347999999999999999999999999999999999999999999


Q ss_pred             CCcCCCCCccc-cCCCeEEeeeceECCCe-EEEcC
Q 032269          105 QSEQSFLDDDQ-MGEGFVLTCAAYPTSDV-TIETH  137 (144)
Q Consensus       105 ~~e~~~L~~~~-~~~g~rLaCq~~~~~dl-~I~~~  137 (144)
                      +.+...+++.+ .+.|++|+||++|.+|. +|...
T Consensus        82 ~~~~~~l~~~e~~~~g~~L~Cqa~p~sD~v~v~~d  116 (128)
T d1doia_          82 MDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYN  116 (128)
T ss_dssp             ECCCSSSCHHHHHTSCEEEGGGEEECSSEEEEEEC
T ss_pred             cCcccCCCHHHHHhCCEEEeeeCEECCCeEEEECC
Confidence            87766777554 56699999999999994 44433

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.1e-21  Score=133.81  Aligned_cols=83  Identities=27%  Similarity=0.442  Sum_probs=69.2

Q ss_pred             cCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-CcccccCEEEEeeCcccCC-----cCCCC-CccccCCCeEEeeeceE
Q 032269           56 TPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-AGACSSCTGKVVSGTVDQS-----EQSFL-DDDQMGEGFVLTCAAYP  128 (144)
Q Consensus        56 ~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-~G~CgtC~v~v~~G~~~~~-----e~~~L-~~~~~~~g~rLaCq~~~  128 (144)
                      .++|+ +|++++|+|||++++++|+++++.|+ .|.||+|+++|.+|.....     |...| ...+..+++||+||+++
T Consensus        12 ~p~g~-~v~~~~G~tLl~aa~~~gi~i~~~CgG~g~CgtC~v~v~~G~~~l~~~~~~E~~~l~~~~~~~~~~RLaCQ~~v   90 (109)
T d1i7ha_          12 CPDGA-VLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARV   90 (109)
T ss_dssp             BTTCE-EEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTTCBC
T ss_pred             CCCCc-EEEeCCCCcHHHHHHHcCCCCCcCCCCcceeCCeEEEeecCccccCCCChHHhhhhhccccCCCCeEEEEeeEE
Confidence            57785 89999999999999999999999996 8999999999999976542     22222 33457789999999999


Q ss_pred             CC-CeEEEcCCc
Q 032269          129 TS-DVTIETHKE  139 (144)
Q Consensus       129 ~~-dl~I~~~~~  139 (144)
                      .+ |++|++|+.
T Consensus        91 ~~~dl~V~lP~~  102 (109)
T d1i7ha_          91 TDEDLVVEIPRY  102 (109)
T ss_dssp             CSSCEEEECCSC
T ss_pred             CCCCEEEEeCcc
Confidence            75 899999874

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.6e-21  Score=130.91  Aligned_cols=84  Identities=20%  Similarity=0.377  Sum_probs=63.4

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC------CcccccCEEEEeeCcccCC-----cCCCCCccccC
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR------AGACSSCTGKVVSGTVDQS-----EQSFLDDDQMG  117 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~------~G~CgtC~v~v~~G~~~~~-----e~~~L~~~~~~  117 (144)
                      |++|+|   +|+ +|++++|+|||+|++++||+||+.|+      .|.||+|+|+|.+|..++.     +...+...+..
T Consensus         1 Mv~i~i---~g~-~~~v~~g~tll~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~~~~~~~~~~~~~~~~~~~   76 (95)
T d2fug33           1 MVRVKV---NDR-IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQ   76 (95)
T ss_dssp             CEEEEC---SSC-EEEECTTCBHHHHHHHHTCCCCCCSCCTTSCCCSCSTTSEEEEEC------------------CCBC
T ss_pred             CcEEEE---CCE-EEEECCCCcHHHHHHhcCCCCCccccCCCcCcccccCCCEEEEccCccccCcccchhhhhhhHhhcC
Confidence            356777   575 79999999999999999999999996      5899999999999987653     23345555667


Q ss_pred             CCeEEeeeceECCCeEEEc
Q 032269          118 EGFVLTCAAYPTSDVTIET  136 (144)
Q Consensus       118 ~g~rLaCq~~~~~dl~I~~  136 (144)
                      .++|||||+++.+||+|++
T Consensus        77 ~~~rlaCqt~v~~gm~V~T   95 (95)
T d2fug33          77 PKLAASCVTAVADGMVVDT   95 (95)
T ss_dssp             SSCEETTTCBCCTTCEEES
T ss_pred             CCccCcCcCCCCCCCEEeC
Confidence            7899999999999999974

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

Probab=99.83  E-value=3.7e-21  Score=131.94  Aligned_cols=90  Identities=20%  Similarity=0.419  Sum_probs=73.4

Q ss_pred             EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccCC------cCCCCC--ccccCCC
Q 032269           51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQS------EQSFLD--DDQMGEG  119 (144)
Q Consensus        51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~------e~~~L~--~~~~~~g  119 (144)
                      +|+|+.++| +++|++++|+|||++++++|++ +++.|+ .|.||+|+|+|.+|..+..      |...|.  ..+..++
T Consensus         2 KIt~i~~dG~~~~i~~~~G~tLl~aa~~~gi~~i~~~CgG~~~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~   81 (106)
T d1xlqa1           2 KVVYVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPN   81 (106)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTT
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHhCcCCchhhhhhccccccceEEecccchhcCCCCCHHHHHHHHhhhccCCCC
Confidence            688877887 5689999999999999999994 999998 8999999999999965421      222332  3456789


Q ss_pred             eEEeeeceECCC---eEEEcCCcc
Q 032269          120 FVLTCAAYPTSD---VTIETHKEE  140 (144)
Q Consensus       120 ~rLaCq~~~~~d---l~I~~~~~~  140 (144)
                      +|||||+++.+|   ++|++|+++
T Consensus        82 sRLaCQ~~v~~~~dgl~V~vPe~q  105 (106)
T d1xlqa1          82 SRLCCQIIMTPELDGIVVDVPDRQ  105 (106)
T ss_dssp             EEEGGGCBCCGGGTTEEEECCSCC
T ss_pred             cEeeeeeEecccCCCEEEECCCcc
Confidence            999999999765   899998754

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

Probab=99.82  E-value=1.4e-21  Score=133.95  Aligned_cols=89  Identities=18%  Similarity=0.422  Sum_probs=72.9

Q ss_pred             EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccC------CcCCCC--CccccCCC
Q 032269           51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQ------SEQSFL--DDDQMGEG  119 (144)
Q Consensus        51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~------~e~~~L--~~~~~~~g  119 (144)
                      +|+|+.++| +++|++++|+|||++++++||+ +++.|+ .|.||+|+|+|.+|..+.      .|...|  ..+++.++
T Consensus         2 kvt~i~~dG~~~~v~~~~G~tLl~aa~~~gi~~i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~l~~~~~~~~~~   81 (105)
T d1b9ra_           2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAG   81 (105)
T ss_dssp             EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTT
T ss_pred             EEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCcccccCCCccccceEEEecccccccCCCCCHHHHHHHHhccccCCCC
Confidence            688867777 4689999999999999999996 999997 899999999999996432      222233  34557889


Q ss_pred             eEEeeeceECCC---eEEEcCCc
Q 032269          120 FVLTCAAYPTSD---VTIETHKE  139 (144)
Q Consensus       120 ~rLaCq~~~~~d---l~I~~~~~  139 (144)
                      +||+||+++.+|   ++|++|-+
T Consensus        82 sRLaCQ~~v~~dldgl~V~vP~~  104 (105)
T d1b9ra_          82 TRLSCQVFIDPSMDGLIVRVPLP  104 (105)
T ss_dssp             BSCGGGCCCCTTSTTEEEECCSC
T ss_pred             cEeEeeeEecccCCCeEEEecCC
Confidence            999999999876   79999865

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

Probab=99.78  E-value=1.5e-19  Score=121.31  Aligned_cols=83  Identities=29%  Similarity=0.537  Sum_probs=66.9

Q ss_pred             EEEEEcCCC-eEEEEcCCchhHHHHHHHcCCC-CCCCCC-CcccccCEEEEeeCcccCC---cCCCCCccccCCCeEEee
Q 032269           51 KVKLITPGG-EEEINCPDDSFILDAAEEAGLD-LPYSCR-AGACSSCTGKVVSGTVDQS---EQSFLDDDQMGEGFVLTC  124 (144)
Q Consensus        51 ~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~-i~~~C~-~G~CgtC~v~v~~G~~~~~---e~~~L~~~~~~~g~rLaC  124 (144)
                      +|+|.. +| +++|++++|+|||++++++||+ +++.|+ .|.||+|+|+|.+|.+...   |...|  ++..+++||+|
T Consensus         2 tvtv~~-~G~~~~i~~~~G~tLl~al~~~gi~~i~~~CgG~~~C~tC~v~v~~g~~~~~~~~E~~~l--~~~~~~~RLaC   78 (93)
T d1l5pa_           2 TITAVK-GGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFL--EDQPANARLAC   78 (93)
T ss_dssp             EEEEEE-TTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHH--TTSCTTEEEGG
T ss_pred             eEEEEE-CCeEEEEEeCCCchHHHHHHHhCCCCccccccCCCEeCccEEEEcCCccCCCChHHHHHh--hccCCCcEEEE
Confidence            466643 45 5689999999999999999995 999997 8999999999999976643   22334  35778999999


Q ss_pred             eceECCC---eEEEc
Q 032269          125 AAYPTSD---VTIET  136 (144)
Q Consensus       125 q~~~~~d---l~I~~  136 (144)
                      |.++.++   ++|++
T Consensus        79 Qi~l~~eldg~~v~~   93 (93)
T d1l5pa_          79 AITLSGENDGAVFEL   93 (93)
T ss_dssp             GCEECGGGTTCEEEC
T ss_pred             EeEeccccCCeEEEC
Confidence            9999874   67764

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=5.6e-19  Score=120.53  Aligned_cols=89  Identities=21%  Similarity=0.312  Sum_probs=71.0

Q ss_pred             ceEEEEEcCCC-eEEEEcCCchhHHHHHHHcCCCCCCC--CC-CcccccCEEEEeeCcccC------CcCCCCC-ccccC
Q 032269           49 TYKVKLITPGG-EEEINCPDDSFILDAAEEAGLDLPYS--CR-AGACSSCTGKVVSGTVDQ------SEQSFLD-DDQMG  117 (144)
Q Consensus        49 ~~~V~i~~~~g-~~~i~v~~g~tLL~a~~~~Gi~i~~~--C~-~G~CgtC~v~v~~G~~~~------~e~~~L~-~~~~~  117 (144)
                      +++|+|+.++| +++++++.|+|||++++++|+++++.  |+ .|.|++|+|++.+|..+.      .|...|. ..+.+
T Consensus         2 ~i~i~~i~~dG~~~~i~~~~G~tLl~~~~~~gi~i~~~~~CgG~~~C~tC~V~v~~~~~~~l~~~~~~E~~~L~~~~~~~   81 (104)
T d2bt6a1           2 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLT   81 (104)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCC
T ss_pred             eEEEEEECCCCCEEEEEeCCCchHHHHHHHcCCCcccccccCCccccceEEEEecccchhhcCCCCHHHHHHhhccCCCC
Confidence            36888877777 46799999999999999999998865  76 999999999999985442      1333343 23567


Q ss_pred             CCeEEeeeceECC---CeEEEcC
Q 032269          118 EGFVLTCAAYPTS---DVTIETH  137 (144)
Q Consensus       118 ~g~rLaCq~~~~~---dl~I~~~  137 (144)
                      +++|||||.++..   +++|++|
T Consensus        82 ~~sRLaCQi~l~~~ldgl~V~vP  104 (104)
T d2bt6a1          82 DRSRLGCQICLTKAMDNMTVRVP  104 (104)
T ss_dssp             TTEEEGGGCBCCGGGTTEEEECC
T ss_pred             cCeEEeeeCEeeccCCCEEEecC
Confidence            8999999999975   4899886

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, N-terminal domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=99.24  E-value=1.1e-11  Score=86.68  Aligned_cols=70  Identities=26%  Similarity=0.521  Sum_probs=59.1

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHcCCCCCCCCC-------CcccccCEEEEeeCcccCCcCCCCCccccCCCeE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCR-------AGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFV  121 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~Gi~i~~~C~-------~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~r  121 (144)
                      |.+|+|   ||+ ++++++|+|||+|++++||.||+.|.       .|.|+.|.|++ +|                .+.+
T Consensus         1 Mvti~I---dG~-~v~~~~G~til~aa~~~gi~IP~lC~~~~l~~~~G~Cr~C~Vev-~G----------------~~~v   59 (126)
T d3c8ya2           1 MKTIII---NGV-QFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EG----------------TGLV   59 (126)
T ss_dssp             CEEEEE---TTE-EEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TT----------------TEEE
T ss_pred             CcEEEE---CCE-EEEeCCCChHHHHHHHcCCccchhhhccCCCCCCccceeEEEEE-cc----------------Cccc
Confidence            467888   675 89999999999999999999999993       48899999988 22                1246


Q ss_pred             EeeeceECCCeEEEcCCc
Q 032269          122 LTCAAYPTSDVTIETHKE  139 (144)
Q Consensus       122 LaCq~~~~~dl~I~~~~~  139 (144)
                      -||++.+..+|+|++.++
T Consensus        60 ~AC~t~v~~GM~V~T~s~   77 (126)
T d3c8ya2          60 TACDTLIEDGMIINTNSD   77 (126)
T ss_dssp             EGGGCBCCTTCEEESSCH
T ss_pred             cccccCCCCCCEEEeCCH
Confidence            799999999999998764

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=5.6e-08  Score=65.34  Aligned_cols=58  Identities=26%  Similarity=0.446  Sum_probs=44.6

Q ss_pred             EEEEcCCchhHHHHHHH----c--CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC---CC
Q 032269           61 EEINCPDDSFILDAAEE----A--GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT---SD  131 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~----~--Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~---~d  131 (144)
                      ++++++++.|+|+++..    .  -+.+.++|+.|.||+|.+.| .|                 ..+|||++.+.   ..
T Consensus        26 y~v~~~~~~tvLd~L~~Ik~~~d~sLsfr~sCr~giCGsCam~I-NG-----------------~~~LAC~t~v~~~~~~   87 (105)
T d1kf6b2          26 YEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NN-----------------VPKLACKTFLRDYTDG   87 (105)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TT-----------------EEEEGGGCBGGGCTTC
T ss_pred             EEEecCCCCcHHHHHHHHHHhcCCcceEEeccCCCCCCCCeEEE-CC-----------------cccccceeEeeccCCC
Confidence            56778899999999942    2  36679999999999999998 22                 25899998765   34


Q ss_pred             eEEEc
Q 032269          132 VTIET  136 (144)
Q Consensus       132 l~I~~  136 (144)
                      ++|+-
T Consensus        88 i~ieP   92 (105)
T d1kf6b2          88 MKVEA   92 (105)
T ss_dssp             EEEEC
T ss_pred             eEEEE
Confidence            66664

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Quinoline 2-oxidoreductase small subunit QorS, N-domain
species: Pseudomonas putida [TaxId: 303]

Probab=98.47  E-value=2.1e-07  Score=59.71  Aligned_cols=50  Identities=26%  Similarity=0.487  Sum_probs=39.2

Q ss_pred             EEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeC
Q 032269           51 KVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSG  101 (144)
Q Consensus        51 ~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G  101 (144)
                      +|+|..++..++++++++++||+++++. |+ ....+|+.|.||.|.|.+ +|
T Consensus         5 ~i~~~vNG~~~~~~~~~~~~Ll~~LR~~l~ltg~K~gC~~G~CGACtVlv-dG   56 (81)
T d1t3qa2           5 RISATINGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DG   56 (81)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TT
T ss_pred             EEEEEECCEEEEEecCCCCCHHHHHhhhhCCcccccCCCCcccCeeEEEE-CC
Confidence            4444333335679999999999999864 76 488999999999999977 44

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=98.43  E-value=3e-07  Score=58.82  Aligned_cols=48  Identities=19%  Similarity=0.494  Sum_probs=38.7

Q ss_pred             ceEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           49 TYKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        49 ~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      +.++++  ++..+++.++++++||+.+++. |+ ...++|+.|.||.|.|.+
T Consensus         3 ~~~~~l--NG~~~~~~v~~~~~Lld~LR~~lgltg~K~gC~~G~CGACtVlv   52 (80)
T d1vlba2           3 QKVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL   52 (80)
T ss_dssp             EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred             eEEEEE--CCEEEEEecCCCCCHHHHHhHhhCCcccccCcCcCCCCeeEEEE
Confidence            344555  3335678899999999999975 76 588999999999999987

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=98.34  E-value=3.8e-07  Score=58.31  Aligned_cols=50  Identities=20%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             ccceEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           47 MATYKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        47 m~~~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      |...+++|  ++..+++.++++++||+++++. |+ ....+|+.|.||.|.|.+
T Consensus         1 M~~~~~~v--NG~~~~~~v~p~~~Ll~~LR~~~gltgtK~GC~~G~CGACtV~v   52 (80)
T d1dgja2           1 METKTLIV--NGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL   52 (80)
T ss_dssp             CEEEECEE--TTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE
T ss_pred             CceEEEEE--CCEEEEEEcCCCCCHHHHHhhhhCCceeccCCCCCCCCeeEEEE
Confidence            34455556  3334578999999999999975 77 678999999999999987

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

Probab=98.32  E-value=3.5e-07  Score=61.42  Aligned_cols=51  Identities=25%  Similarity=0.473  Sum_probs=39.8

Q ss_pred             EEEEcCCchhHHHHHHH----c--CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           61 EEINCPDDSFILDAAEE----A--GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        61 ~~i~v~~g~tLL~a~~~----~--Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      ++++..++.|+|+++..    .  -+.+.++|+.|+||+|.++| .|.                 .+|||++++.
T Consensus        26 y~v~~~~~~tvld~L~~Ik~~~D~sl~fr~sCr~giCGsCam~I-NG~-----------------~~lAC~t~v~   82 (106)
T d2bs2b2          26 YKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGR-----------------PSLACRTLTK   82 (106)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTE-----------------EEEGGGCBGG
T ss_pred             EEecCCCCCcHHHHHHHHHHhcCCcEEEEeCcCCCCCCcceEEE-CCc-----------------cccceeeeee
Confidence            45667889999999842    1  26788999999999999998 332                 3899998764

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
species: Thauera aromatica [TaxId: 59405]

Probab=98.27  E-value=1e-06  Score=56.40  Aligned_cols=49  Identities=33%  Similarity=0.610  Sum_probs=38.7

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CCC-CCCCCCCcccccCEEEEeeC
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GLD-LPYSCRAGACSSCTGKVVSG  101 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi~-i~~~C~~G~CgtC~v~v~~G  101 (144)
                      +++++  ++..+++.++++++||+++++. |+. ...+|+.|.||.|-|.| +|
T Consensus         5 i~~~l--NG~~~~~~v~~~~~Ll~~LR~~lgltgtK~gC~~G~CGACTVlv-dG   55 (81)
T d1rm6c2           5 LRLTL--NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DD   55 (81)
T ss_dssp             EEEEE--TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TT
T ss_pred             EEEEE--CCEEEEEecCCCCCHHHHHHHhhCCcccccCCccccCCccEEeE-CC
Confidence            44555  3334578899999999999875 774 88999999999999976 44

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]

Probab=98.18  E-value=2.3e-06  Score=54.40  Aligned_cols=50  Identities=18%  Similarity=0.410  Sum_probs=39.3

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      ++++|  ++..++++++++++|++++++. |+ ....+|+.|.||.|-|.+ +|.
T Consensus         4 i~~~l--NG~~~~~~v~p~~~Ll~~LR~~~~ltgtK~GC~~G~CGaCTVlv-dg~   55 (79)
T d1n62a2           4 IELTI--NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DGM   55 (79)
T ss_dssp             EEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE
T ss_pred             EEEEE--CCEEEEEecCCCCcHHHHHhhhcCCcccccCCccccccccEEEe-CCc
Confidence            34444  3335678999999999999965 76 589999999999999976 443

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]

Probab=98.14  E-value=3e-06  Score=53.85  Aligned_cols=50  Identities=20%  Similarity=0.465  Sum_probs=39.5

Q ss_pred             eEEEEEcCCCeEEEEcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEEeeCc
Q 032269           50 YKVKLITPGGEEEINCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKVVSGT  102 (144)
Q Consensus        50 ~~V~i~~~~g~~~i~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v~~G~  102 (144)
                      +++++  ++..+++.++++++||+.+++. |+ ....+|+.|.||.|-|.+ +|.
T Consensus         4 i~~~v--NG~~~~~~v~~~~~Ll~~LR~~~gl~gtK~GC~~G~CGaCTVlv-dg~   55 (79)
T d1ffva2           4 ITVNV--NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DGR   55 (79)
T ss_dssp             EEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE
T ss_pred             EEEEE--CCEEEEEeCCCCCCHHHHHhhhcCCcccccCCccccccccEEec-CCc
Confidence            45555  3335678999999999999875 77 478899999999999976 443

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine dehydrogenase chain A, N-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.04  E-value=6.3e-06  Score=52.91  Aligned_cols=48  Identities=19%  Similarity=0.457  Sum_probs=37.1

Q ss_pred             EEEEcCCCeEEEEc-CCchhHHHHHHHcCC-CCCCCCCCcccccCEEEEe
Q 032269           52 VKLITPGGEEEINC-PDDSFILDAAEEAGL-DLPYSCRAGACSSCTGKVV   99 (144)
Q Consensus        52 V~i~~~~g~~~i~v-~~g~tLL~a~~~~Gi-~i~~~C~~G~CgtC~v~v~   99 (144)
                      |+|..++..+++.+ +++++|++.++++|+ .....|+.|.||.|.|.|.
T Consensus         3 i~f~vNG~~~~~~~~~~~~~Ll~~LR~~~ltgtK~GC~~G~CGACtVlvd   52 (84)
T d1jroa2           3 IAFLLNGETRRVRIEDPTQSLLELLRAEGLTGTKEGCNEGDCGACTVMIR   52 (84)
T ss_dssp             EEEEETTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEEE
T ss_pred             EEEEECCEEEEEEcCCCCCcHHHHHHHCCCccCccCcCCcccceeEEEEE
Confidence            44432333456776 478999999999987 4789999999999999883

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=1.4e-05  Score=53.38  Aligned_cols=49  Identities=27%  Similarity=0.462  Sum_probs=35.6

Q ss_pred             EEcCCc--hhHHHHHHH---c--CCCCCCCCCCcccccCEEEEeeCcccCCcCCCCCccccCCCeEEeeeceEC
Q 032269           63 INCPDD--SFILDAAEE---A--GLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQMGEGFVLTCAAYPT  129 (144)
Q Consensus        63 i~v~~g--~tLL~a~~~---~--Gi~i~~~C~~G~CgtC~v~v~~G~~~~~e~~~L~~~~~~~g~rLaCq~~~~  129 (144)
                      ++++++  .++|+++..   +  -+.+.++|+.|.||+|.++| .|.                 -+|||++.+.
T Consensus        25 v~~~~~~~~~vl~~L~~i~e~D~sLsfr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~   80 (106)
T d1nekb2          25 LEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK-----------------NGLACITPIS   80 (106)
T ss_dssp             CCCCSSSCCBHHHHHHHHHHHCTTCCCCCCSSSSCSCTTEEEE-TTE-----------------EEETTSCBTT
T ss_pred             EeecCCccHHHHHHHHHHhccCCCEEEEcCCCCCCCCcceEEE-cCc-----------------cccchheehh
Confidence            344444  589998765   2  35678899999999999998 222                 4888888754

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine oxidase, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=1.5e-05  Score=51.76  Aligned_cols=35  Identities=26%  Similarity=0.565  Sum_probs=30.9

Q ss_pred             EcCCchhHHHHHHHc-CC-CCCCCCCCcccccCEEEE
Q 032269           64 NCPDDSFILDAAEEA-GL-DLPYSCRAGACSSCTGKV   98 (144)
Q Consensus        64 ~v~~g~tLL~a~~~~-Gi-~i~~~C~~G~CgtC~v~v   98 (144)
                      .+++++|||+.++++ |+ .....|+.|.||.|-|.+
T Consensus        17 ~~~p~~tLl~~LR~~~~ltGtK~GC~~G~CGACTVlv   53 (90)
T d1v97a2          17 NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVML   53 (90)
T ss_dssp             TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEE
T ss_pred             cCCCCCCHHHHHHhhcCCCccccCcCCcccceeEEEE
Confidence            478899999999876 77 488999999999999976

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=97.26  E-value=3e-05  Score=54.08  Aligned_cols=21  Identities=24%  Similarity=0.582  Sum_probs=18.0

Q ss_pred             CCCCCcccccCEEEEeeCccc
Q 032269           84 YSCRAGACSSCTGKVVSGTVD  104 (144)
Q Consensus        84 ~~C~~G~CgtC~v~v~~G~~~  104 (144)
                      ..|+.|.||+|++++.+|...
T Consensus       122 m~Cg~GiCg~C~~~~~~g~~~  142 (160)
T d1ep3b2         122 MACGIGACYACVEHDKEDESH  142 (160)
T ss_dssp             CSSSSSSSCTTEEEETTEEEE
T ss_pred             ccCCCcccCcCcceecCCCCC
Confidence            369999999999999888653