Citrus Sinensis ID: 032289

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTSRCLSMFLSSQQLMKTLRCNS
Secondary Structure (PSIPRED)
ccccccccccEEEccEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccEEEEEEEEcccccccccccccccccEEEccccccccccccccccHHHHHHHHHHccccEEccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHccccccEEEcccHHHHHHccccHHHHHHHHHHHHccccccccEEEEEEEcccccccHHHHHHHHHcccccccccHcccccccccEEcccccccHHEHccccHHHHHHHccccccccHcHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mlkeeglpagvtlgsctvleaagdgalPTLLKTLESSISQTNTNNEQVIWIHVGvnsgsskfALERRAVneatflcpdqlgwqpqqipvvledggisrsrQAVSFAIMSITThfglqsrrVTSRCLSMFLSSQQLMKTLRCNS
Flexible Loop (DISEMBL)
mlkeeglpagvTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFlcpdqlgwqpQQIPVVLEDGGISRSRQAVSFAIMSITthfglqsrRVTSRCLSMFlssqqlmktlrcns
Low Complexity Region (SEG)
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTSRCLSMFLSSQQLMKTLRCNS
Disordered region (IsUnstruct)
*********GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTSRCLSMFLS************
Disordered Region (DISOPRED)
*******PAGVTLGSCTVLEAAGDGALPTLLKTLESS******NNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTSRCLSMFLSSQQLMKTLRC**
Disordered Region (DISEMBL)
********AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTSRCLSMFLSSQQLMKTLRCNS
Disordered Region (DISPRO)
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTSRCLSMFLSSQQLMKTLRCNS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTSRCLSMFLSSQQLMKTLRCNS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
363814553	217	uncharacterized protein LOC100784344 [Gl	0.706	0.465	0.647	4e-35
225425579	217	PREDICTED: pyrrolidone-carboxylate pepti	0.706	0.465	0.647	1e-34
388506610	218	unknown [Medicago truncatula]	0.706	0.463	0.627	2e-34
255568774	218	pyroglutamyl-peptidase I, putative [Rici	0.706	0.463	0.647	1e-31
242046718	220	hypothetical protein SORBIDRAFT_02g04083	0.706	0.459	0.615	2e-31
307135968	610	polygalacturonase [Cucumis melo subsp. m	0.699	0.163	0.643	8e-31
449435568	220	PREDICTED: pyrrolidone-carboxylate pepti	0.972	0.631	0.458	9e-31
115479013	216	Os09g0396300 [Oryza sativa Japonica Grou	0.706	0.467	0.605	3e-30
449478579	610	PREDICTED: probable polygalacturonase At	0.699	0.163	0.633	4e-30
42562269	217	Peptidase C15, pyroglutamyl peptidase I-	0.706	0.465	0.568	4e-30

>gi|363814553|ref|NP_001242752.1| uncharacterized protein LOC100784344 [Glycine max] gi|255640147|gb|ACU20364.1| unknown [Glycine max]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 89/102 (87%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            ++  GLPAGVTLGSCTVL+ AGDGALP L +T+ES+IS+T++ +N  V+W+H+GVNSG+
Sbjct: 37  YVERRGLPAGVTLGSCTVLDVAGDGALPQLYQTMESAISKTDSVSNANVVWLHLGVNSGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
            +FA+E +A NEATF CPD+LGWQPQQ+P+VLEDGGIS++R+
Sbjct: 97  VRFAIEHQAANEATFRCPDELGWQPQQLPIVLEDGGISQTRK 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425579|ref|XP_002266223.1| PREDICTED: pyrrolidone-carboxylate peptidase [Vitis vinifera] gi|147822222|emb|CAN63940.1| hypothetical protein VITISV_032502 [Vitis vinifera] gi|297739066|emb|CBI28555.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            +++ GLP GVTLGSC VLE AGDGALP L K +ES IS  +  +NEQV+W+H+GVN G+
Sbjct: 37  FIQKRGLPNGVTLGSCIVLETAGDGALPMLYKIMESGISGADALSNEQVVWLHLGVNGGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
            KFA+ER+AVNEA+F CPD+LGWQPQQ+P+VLEDGG +++RQ
Sbjct: 97  HKFAIERQAVNEASFRCPDELGWQPQQLPIVLEDGGTTQTRQ 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506610|gb|AFK41371.1| unknown [Medicago truncatula]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 88/102 (86%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            ++++G PAGVTLGSCT+LE AGD ALP L +T+ES +S+T+T +N  ++W+H+GVNSG+
Sbjct: 37  YVEKKGFPAGVTLGSCTILEVAGDDALPQLYQTMESVVSKTDTESNANLVWLHLGVNSGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           ++FA+ER A NEATF C D+LGWQPQQ+P+VLEDGGISR+R+
Sbjct: 97  ARFAIERLAANEATFRCSDELGWQPQQVPIVLEDGGISRTRE 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568774|ref|XP_002525358.1| pyroglutamyl-peptidase I, putative [Ricinus communis] gi|223535321|gb|EEF36996.1| pyroglutamyl-peptidase I, putative [Ricinus communis]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 81/102 (79%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            +++ GLPAGVTLGSC VLE AG+GALP L K LES+ + TN   NEQV+W+H+GVNSG+
Sbjct: 37  FVQKRGLPAGVTLGSCNVLETAGEGALPLLYKVLESNAAATNVGENEQVVWLHLGVNSGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
             FA+ER AVNEATF CPD+LGWQP Q P+V EDGG S +R+
Sbjct: 97  LGFAIERLAVNEATFRCPDELGWQPLQHPIVPEDGGTSCTRE 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242046718|ref|XP_002461105.1| hypothetical protein SORBIDRAFT_02g040830 [Sorghum bicolor] gi|241924482|gb|EER97626.1| hypothetical protein SORBIDRAFT_02g040830 [Sorghum bicolor]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 81/104 (77%), Gaps = 3/104 (2%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNE---QVIWIHVGVNS 57
            L++ GLP  + LGSCTVLE AG GALPTL K LES+I+   T +    QVIWIH GVNS
Sbjct: 37  FLEKRGLPKNLVLGSCTVLETAGQGALPTLYKVLESAIADRGTGSSAQGQVIWIHFGVNS 96

Query: 58  GSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           G+++FALE +AVNEATF CPD+LGW+PQ++P+V  DG ISR+R+
Sbjct: 97  GATRFALENQAVNEATFRCPDELGWKPQRVPIVPSDGSISRTRE 140

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135968|gb|ADN33827.1| polygalacturonase [Cucumis melo subsp. melo]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 82/101 (81%), Gaps = 1/101 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSS 60
            ++E+GLPAGVTLGSCTVL+AAGDGALP L K LES IS     N +V+W+H+GVNSGS+
Sbjct: 37  FVEEKGLPAGVTLGSCTVLDAAGDGALPVLHKVLESGISNVTETN-KVVWLHLGVNSGST 95

Query: 61  KFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           +FA+E +AVNEATF   D+LGWQPQ++P+V EDG IS  R+
Sbjct: 96  RFAIEWQAVNEATFRYADELGWQPQKLPIVSEDGEISMIRK 136

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435568|ref|XP_004135567.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449435570|ref|XP_004135568.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] gi|449508620|ref|XP_004163364.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449508623|ref|XP_004163365.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 99/144 (68%), Gaps = 5/144 (3%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTN---TNNEQVIWIHVGVNS 57
            +++ GLP G+T+GSC++LE AG GAL  L KTL+S++       TN+ ++IW+H+GVNS
Sbjct: 37  YMEKNGLPEGLTIGSCSILETAGQGALDLLHKTLQSAVEGKGSEPTNSRRIIWLHLGVNS 96

Query: 58  GSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQ 117
           G+S+FA+ER+A NEATF CPD++GW+PQ++P+VLEDG +SR+R+  S  +  IT     +
Sbjct: 97  GASRFAIERQAFNEATFRCPDEMGWKPQKVPIVLEDGEVSRARE-TSLPVEEITKTLAKK 155

Query: 118 SRRV-TSRCLSMFLSSQQLMKTLR 140
              V TS     F+ +     +LR
Sbjct: 156 GYEVMTSDDAGRFVCNYVYYHSLR 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115479013|ref|NP_001063100.1| Os09g0396300 [Oryza sativa Japonica Group] gi|50252601|dbj|BAD28772.1| pyrrolidone carboxyl peptidase-like protein [Oryza sativa Japonica Group] gi|113631333|dbj|BAF25014.1| Os09g0396300 [Oryza sativa Japonica Group] gi|218202109|gb|EEC84536.1| hypothetical protein OsI_31272 [Oryza sativa Indica Group] gi|222641516|gb|EEE69648.1| hypothetical protein OsJ_29259 [Oryza sativa Japonica Group]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 81/104 (77%), Gaps = 3/104 (2%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNE---QVIWIHVGVNS 57
            ++++GLP  + LGSCTVLE AG GAL TL K LESSI++    +    QVIWIH GVNS
Sbjct: 37  FVEKKGLPKNLVLGSCTVLETAGQGALGTLYKVLESSIAERENGSSAQGQVIWIHFGVNS 96

Query: 58  GSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           G+++FALE +AVNEATF CPD+LGW+PQ+ P+V  DGGISR+R+
Sbjct: 97  GATRFALENQAVNEATFRCPDELGWKPQRAPIVPSDGGISRTRE 140

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478579|ref|XP_004155358.1| PREDICTED: probable polygalacturonase At1g80170-like [Cucumis sativus]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 81/101 (80%), Gaps = 1/101 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSS 60
            ++E+GLPAGVTLGSCTVL+AAGDGALP L K LES IS     N +V+W+H+GVNSGS+
Sbjct: 37  FVEEKGLPAGVTLGSCTVLDAAGDGALPVLHKVLESGISNVTETN-KVVWLHLGVNSGST 95

Query: 61  KFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           +FA+E +AVNEATF   D+ GWQPQ++P+V EDG IS  R+
Sbjct: 96  RFAIEWQAVNEATFRYADEHGWQPQKLPIVSEDGEISMIRK 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562269|ref|NP_173758.2| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana] gi|13430708|gb|AAK25976.1|AF360266_1 unknown protein [Arabidopsis thaliana] gi|22136908|gb|AAM91798.1| unknown protein [Arabidopsis thaliana] gi|51969334|dbj|BAD43359.1| unknown protein [Arabidopsis thaliana] gi|51969520|dbj|BAD43452.1| unknown protein [Arabidopsis thaliana] gi|51970030|dbj|BAD43707.1| unknown protein [Arabidopsis thaliana] gi|51970156|dbj|BAD43770.1| unknown protein [Arabidopsis thaliana] gi|51970174|dbj|BAD43779.1| unknown protein [Arabidopsis thaliana] gi|51970494|dbj|BAD43939.1| unknown protein [Arabidopsis thaliana] gi|332192266|gb|AEE30387.1| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 84/102 (82%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSI-SQTNTNNEQVIWIHVGVNSGS 59
            +++ GLP+G+ LGSC+VL+ AG+GA   L + LESS+ S    NN  V+W+H+GVNSG+
Sbjct: 37  YVEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNNNGTVVWLHLGVNSGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           +KFA+ER+AVNEA F CPD+LGWQPQ++P+V+EDGGIS++++
Sbjct: 97  TKFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGGISKAKE 138

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2028906	217	AT1G23440 [Arabidopsis thalian	0.699	0.460	0.574	4.9e-30
TAIR|locus:2027615	219	AT1G56700 [Arabidopsis thalian	0.699	0.456	0.514	2.6e-24
DICTYBASE|DDB_G0267498	207	pgpep "pyroglutamyl-peptidase	0.699	0.483	0.266	2.8e-05

TAIR|locus:2028906 AT1G23440 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 58/101 (57%), Positives = 84/101 (83%)

Query:     2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSI-SQTNTNNEQVIWIHVGVNSGSS 60
             +++ GLP+G+ LGSC+VL+ AG+GA   L + LESS+ S    NN  V+W+H+GVNSG++
Sbjct:    38 VEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNNNGTVVWLHLGVNSGAT 97

Query:    61 KFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
             KFA+ER+AVNEA F CPD+LGWQPQ++P+V+EDGGIS++++
Sbjct:    98 KFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGGISKAKE 138

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2027615 AT1G56700 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 53/103 (51%), Positives = 76/103 (73%)

Query:    11 VTLGSCTVLEAAGDGALPTLLKTLESSIS--QTNTNNEQVIWIHVGVNSGSSKFALERRA 68
             V LGSCTVLE AG GAL +L + L+S+++  ++ +   + IW+H GVNSG++KFA+E++A
Sbjct:    47 VNLGSCTVLETAGQGALASLYQLLQSAVNTKESESLTGKTIWVHFGVNSGATKFAIEQQA 106

Query:    69 VNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSIT 111
             VNEATF CPD+LGW+PQ +P+V  DG IS  R+  +  +  IT
Sbjct:   107 VNEATFRCPDELGWKPQNLPIVPSDGPISTVRKT-NLPVEEIT 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

DICTYBASE|DDB_G0267498 pgpep "pyroglutamyl-peptidase I" [Dictyostelium discoideum (taxid:44689)]

 Score = 104 (41.7 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 28/105 (26%), Positives = 52/105 (49%)

Query:    18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCP 77
             V++ +G+G +   L  +E++  +T+ ++  ++ IH GV+S  +   LER   N A F C 
Sbjct:    51 VIKVSGNG-VKDYLNQIETNYLKTSKDDIPIL-IHFGVSSSETNNRLERYGWNMADFRCD 108

Query:    78 DQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVT 122
             D+  W+PQ  P+   D   S  +   +  I  +       + +VT
Sbjct:   109 DEDMWKPQNEPI---DSNDSSDKYETTLPINDLVEKLSNSNYKVT 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       143   0.00091  102 3  11 22  0.44    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  126 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.65u 0.14s 13.79t   Elapsed:  00:00:01
  Total cpu time:  13.65u 0.14s 13.79t   Elapsed:  00:00:01
  Start:  Sat May 11 00:20:57 2013   End:  Sat May 11 00:20:58 2013

GO:0006508 "proteolysis" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002740001 SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_135, whole genome shotgun sequence); (217 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
cd00501	194	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PG	1e-11

>gnl|CDD|238279 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 49  IWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSR 100
           + IHVG+  G S   +ER A+N      PD  G QP   P+V        S 
Sbjct: 63  LVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFST 114

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
COG2039	207	Pcp Pyrrolidone-carboxylate peptidase (N-terminal	100.0
PRK13193	209	pyrrolidone-carboxylate peptidase; Provisional	99.97
PRK13194	208	pyrrolidone-carboxylate peptidase; Provisional	99.97
PRK13195	222	pyrrolidone-carboxylate peptidase; Provisional	99.97
PRK13196	211	pyrrolidone-carboxylate peptidase; Provisional	99.97
PF01470	202	Peptidase_C15: Pyroglutamyl peptidase This is fami	99.96
TIGR00504	212	pyro_pdase pyroglutamyl-peptidase I. Alternate nam	99.96
PRK13197	215	pyrrolidone-carboxylate peptidase; Provisional	99.95
cd00501	194	Peptidase_C15 Pyroglutamyl peptidase (PGP) type I,	99.93
KOG4755	213	consensus Predicted pyroglutamyl peptidase [Posttr	97.73
PF06162	166	DUF976: Caenorhabditis elegans protein of unknown	97.71
KOG4755	213	consensus Predicted pyroglutamyl peptidase [Posttr	86.19

>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-35  Score=236.30  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=105.3

Q ss_pred             eeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeec
Q 032289           12 TLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVL   91 (143)
Q Consensus        12 ~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~   91 (143)
                      ..+.+-+|+|+|..+.+.|.+.|++        .+|++||++|+|+||+.||+||||||++|||||||+|+||.||||++
T Consensus        34 ~~V~~~~lP~~f~~s~~~l~~~i~~--------~qPd~vl~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDepI~~  105 (207)
T COG2039          34 AEVKGRILPVVFKKSIDALVQAIAE--------VQPDLVLAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEPIDP  105 (207)
T ss_pred             ceEEEEEcCccHHHHHHHHHHHHHh--------hCCCeEEEecccCCCCcCChhheeeccccccCCCCCCCCcCCCccCC
Confidence            3456789999999999999999986        89999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHH
Q 032289           92 EDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQL  135 (143)
Q Consensus        92 ~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~  135 (143)
                      |   ||+||| ||||+|+|+.+|+++|||+.-     -++||++-|+-|
T Consensus       106 d---GpaAYf-stlPvkamv~~~~~~GiPA~vS~sAGTyvCNhvmY~~l  150 (207)
T COG2039         106 D---GPAAYF-STLPVKAMVQAIREAGIPASVSNSAGTYVCNHVMYGLL  150 (207)
T ss_pred             C---Cchhhh-hcCcHHHHHHHHHHcCCChhhhcccchhhhHHHHHHHH
Confidence            9   899999 999999999999999999976     889999888765

>PRK13193 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.97  E-value=9.1e-32  Score=217.40  Aligned_cols=114  Identities=10%  Similarity=0.025  Sum_probs=105.3

Q ss_pred             ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCccccee
Q 032289           10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV   89 (143)
Q Consensus        10 ~~~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI   89 (143)
                      +..+ ...+|+|+++.+.+.+.+++++        .+|++|||+||++||+.|++||+|+|++||++|||+|++|.+++|
T Consensus        33 ~~~v-~~~~LPv~~~~~~~~l~~~~~~--------~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I  103 (209)
T PRK13193         33 KEEV-KGVILPVEYEKIEDLIVTKIRE--------MKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKI  103 (209)
T ss_pred             CceE-EEEEeCCcHHHHHHHHHHHHHH--------HCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcc
Confidence            3444 4589999999999999778875        789999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           90 VLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        90 ~~~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                      +++   ||++|| |+||+++|+++|+++|+|++-     +++|+|++|++|-
T Consensus       104 ~~~---gp~~~~-t~lp~~~l~~~l~~~Gip~~~S~~AG~yvCN~vyY~sl~  151 (209)
T PRK13193        104 DPL---GQDGIF-TNIPVEDLVDLLNENGIPAELSLSAGSYLCNNAMYIIIR  151 (209)
T ss_pred             cCC---Ccceee-cCCCHHHHHHHHHhcCCCceEecCCccchhHHHHHHHHH
Confidence            998   899999 999999999999999999987     8899888888874

>PRK13194 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.97  E-value=1.9e-31  Score=215.40  Aligned_cols=111  Identities=22%  Similarity=0.216  Sum_probs=103.5

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++++.+.|.+++++        .+|++|||+|+++||+.|+|||+|+|.+||++|||+|++|.++||+++ 
T Consensus        36 v~~~~LPV~~~~~~~~l~~~l~~--------~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~-  106 (208)
T PRK13194         36 VFGRVLPVSFKRAREELEKVLDE--------IKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVEG-  106 (208)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHH--------hCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccCC-
Confidence            55789999999999999888875        789999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                        ||++|| ||||+++|+++|++.|+|++-     +++|+|++|.+|-
T Consensus       107 --gp~~y~-ttlp~~~l~~~l~~~gip~~~S~dAG~ylCN~iyY~sL~  151 (208)
T PRK13194        107 --APAAYF-ATLPTREIVEELKKNGIPAVLSYSAGTYLCNYVMYLTLH  151 (208)
T ss_pred             --CCCccc-CCCCHHHHHHHHHhcCCCcEEeCCCccchhHHHHHHHHH
Confidence              899999 999999999999999999987     8888888887764

>PRK13195 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.97  E-value=2.2e-31  Score=217.51  Aligned_cols=110  Identities=13%  Similarity=0.046  Sum_probs=100.2

Q ss_pred             eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCC---CCCCCCCCcccceeec
Q 032289           15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFL---CPDQLGWQPQQIPVVL   91 (143)
Q Consensus        15 ~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfr---iPDn~G~qP~depI~~   91 (143)
                      ...+|+|+++.+.+.+.+++++        .+|++|||+|||+||+.|++||+|||++|+|   +|||+|++|.++||++
T Consensus        38 ~~~~lPv~f~~~~~~l~~~i~~--------~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~  109 (222)
T PRK13195         38 ISRIVPNTFFESIAAAQQAIAE--------IEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGEPTDP  109 (222)
T ss_pred             EEEEeCeEehHHHHHHHHHHHH--------HCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCCCcccC
Confidence            3468999999999999888875        7899999999999999999999999999975   9999999999999999


Q ss_pred             CCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           92 EDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        92 ~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                      +   ||++|| ||||+++|+++|+++|||++-     +++|||++|.+|-
T Consensus       110 ~---gp~ay~-stLpv~~iv~~l~~~gipa~vS~~AGtYvCN~v~Y~sL~  155 (222)
T PRK13195        110 A---GPVAYH-ATVPVRAMVLAMRKAGVPADVSDAAGTFVCNHLMYGVLH  155 (222)
T ss_pred             C---Ccceee-cCCCHHHHHHHHHhcCCCceEecCCCcceehHHHHHHHH
Confidence            8   899999 999999999999999999976     7777777776663

>PRK13196 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.97  E-value=1.6e-30  Score=210.14  Aligned_cols=111  Identities=19%  Similarity=0.227  Sum_probs=101.3

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCccccee--ec
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV--VL   91 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI--~~   91 (143)
                      +...+|+|+++.+.+.|.++++.        .+|++|||+|+|+||+.|+|||+|+|++||++|||+|++|.++||  .+
T Consensus        37 v~~~~LPV~~~~~~~~l~~~~~~--------~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~  108 (211)
T PRK13196         37 VHSALLPVEPRAAMAALSRLLDE--------LQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTPVCTEP  108 (211)
T ss_pred             EEEEEeCCChhHHHHHHHHHHHH--------hCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCCcccCC
Confidence            56789999999999999888875        789999999999999999999999999999999999999999999  76


Q ss_pred             CCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           92 EDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        92 ~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                      +   ||++|| ||||+++|+++|+++|+|++-     +++|+|++|..|-
T Consensus       109 ~---gp~~y~-stLpv~~l~~~l~~~gip~~iS~~AG~YlCN~v~Y~sL~  154 (211)
T PRK13196        109 D---APAAYL-STLPLRAILAAWHDAGIPGHISNTAGLYVCNFVLYHALH  154 (211)
T ss_pred             C---Ccccee-cCCCHHHHHHHHHhcCCCceEccCCCceeehHHHHHHHH
Confidence            6   899999 999999999999999999876     6677666666654

>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification

Probab=99.96  E-value=1.5e-30  Score=208.00  Aligned_cols=116  Identities=25%  Similarity=0.357  Sum_probs=88.3

Q ss_pred             CceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccce
Q 032289            9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP   88 (143)
Q Consensus         9 ~~~~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~dep   88 (143)
                      .+..+ ...+|+|+++.+.+.+.++|++        .+|++|||+|+++||+.|+|||+|+|.+|||+|||+|++|.+++
T Consensus        32 ~~~~v-~~~~lPV~~~~~~~~l~~~l~~--------~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~  102 (202)
T PF01470_consen   32 GGAEV-HTRELPVSYEKAFEALEELLEE--------HQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEP  102 (202)
T ss_dssp             TTEEE-EEEEE-SSHHHHHHHHHHHHHH--------H--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-
T ss_pred             CCceE-EEEEecCchHhHHHHHHHHHHh--------cCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCcc
Confidence            34443 5789999999999999888875        78999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           89 VVLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        89 I~~~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                      |+++   ||.+|| |+||+++|+++|+++|+|++-     +++|+|++|.+|..
T Consensus       103 i~~~---gp~~~~-t~lp~~~l~~~l~~~gip~~~S~dAG~YlCN~~~Y~sl~~  152 (202)
T PF01470_consen  103 IVPD---GPEAYF-TTLPVRALVEALREAGIPVEISNDAGRYLCNYIYYRSLHH  152 (202)
T ss_dssp             SSTT---S-SEEE--BS-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHH
T ss_pred             ccCC---Ccccee-cCCCHHHHHHHHHHcCCCCcccCChhhhHHHHHHHHHHHH
Confidence            9998   899999 999999999999999999987     88888888888854

; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....

>TIGR00504 pyro_pdase pyroglutamyl-peptidase I

Probab=99.96  E-value=8e-30  Score=206.04  Aligned_cols=111  Identities=20%  Similarity=0.201  Sum_probs=102.6

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++.+.+.|.+.+++        .+|++|||+|+++||+.|+|||+|+|++|+|+|||+|++|.++||+++ 
T Consensus        34 i~~~~lPV~~~~~~~~l~~~l~~--------~~Pd~vi~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~-  104 (212)
T TIGR00504        34 VVAEILPNTFFEAIEALQQAIDE--------IEPDIVIMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVPD-  104 (212)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHH--------HCCCEEEEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccCC-
Confidence            45578999999999999888875        789999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                        ||++|| |+||+++|+++|++.|+|++-     +++|+|++|.+|.
T Consensus       105 --gp~~~~-ttLpv~~l~~~l~~~gip~~~S~dAG~ylCN~i~Y~sL~  149 (212)
T TIGR00504       105 --GPAAYF-ATLPVRAMVLAMKKAGIPADVSYTAGTFVCNHLMYGLLH  149 (212)
T ss_pred             --CCceee-cCCCHHHHHHHHHHcCCCeeEeCCCCceeeHHHHHHHHH
Confidence              899999 999999999999999999887     7777777777764

Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.

>PRK13197 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.95  E-value=1.4e-28  Score=199.10  Aligned_cols=111  Identities=17%  Similarity=0.127  Sum_probs=100.9

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++.+.+.+.+++++        .+|++|||+|+++||+.|+|||+|+|..|+++|||+|++|.++||+++ 
T Consensus        37 i~~~~lPV~y~~~~~~l~~~l~~--------~~Pd~vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~-  107 (215)
T PRK13197         37 IIKRQLPTVFGKSAEVLKEAIEE--------VQPDAVICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIVED-  107 (215)
T ss_pred             EEEEEECCChHHHHHHHHHHHHH--------hCCCEEEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcccCC-
Confidence            44579999999999999888875        789999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                        ||++|| |+||+++|+++|++.|+|++-     +++|+|++|.+|-
T Consensus       108 --gp~~~~-t~Lp~~~l~~~l~~~gip~~~S~dAG~YlCN~i~Y~sl~  152 (215)
T PRK13197        108 --GPAAYF-STLPIKAMVKAIREAGIPASVSNTAGTFVCNHVMYGLLH  152 (215)
T ss_pred             --CCceeE-cCCCHHHHHHHHHHcCCCceeccCCCceeehHHHHHHHH
Confidence              899999 999999999999999999887     6666666666553

>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

Probab=99.93  E-value=3e-26  Score=180.79  Aligned_cols=112  Identities=21%  Similarity=0.210  Sum_probs=102.1

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++.+.+.+.+.+++        .+|+++||+|+++|++.|+|||+|+|..++++|||+|++|.++||.++ 
T Consensus        36 i~~~~lpv~y~~~~~~~~~~~~~--------~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~-  106 (194)
T cd00501          36 VVGLELPVVFQKAVEVLPELIEE--------HKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPG-  106 (194)
T ss_pred             EEEEEcCccHHHHHHHHHHHHHH--------hCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCC-
Confidence            45578999999999999887775        789999999999999999999999999999999999999999999997 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                        ||++|+ |+||+++|++++++.|+|++-     +++|+|++|.+|-.
T Consensus       107 --g~~~~~-t~lp~~~l~~~l~~~g~~~~~S~dAG~YlCn~~~Y~sL~~  152 (194)
T cd00501         107 --GPAAYF-STLPVKAIVKALREAGIPARVSNDAGTYLCNHVYYGSLHE  152 (194)
T ss_pred             --CCCeee-ecCCHHHHHHHHHhcCCCceEcCCCCceeeHHHHHHHHHH
Confidence              899999 999999999999999999987     77777777777654

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.

>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=4.1e-06  Score=68.91  Aligned_cols=77  Identities=22%  Similarity=0.270  Sum_probs=47.0

Q ss_pred             ccCCCCCceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeee-------------
Q 032289            3 KEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV-------------   69 (143)
Q Consensus         3 ~~~~~~~~~~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAi-------------   69 (143)
                      +++|.++.+....++..+...+.+.+-.++            .. ...||+|..+....+++|+.|+             
T Consensus        47 k~~~~s~~l~~~~~~sy~~v~~~i~e~~~~------------~~-~~aIhl~sh~~knti~i~~~af~~gy~~~d~~g~v  113 (213)
T KOG4755|consen   47 KKGGVSKYLCFKMCTSYETVDEIILELWEE------------HL-QSAIHLGSHSQKNTIQIEQSAFSSGYTQKDKCGKV  113 (213)
T ss_pred             HcCCceecceecceechhhHhHHHHHhhcc------------ce-eEEEEecccccCcEEEEEEecccCCccchhhcccc
Confidence            455567777777887444333333333322            22 5667777766666666666666             


Q ss_pred             ---ecCCCCCCCCCCCCcccceeecC
Q 032289           70 ---NEATFLCPDQLGWQPQQIPVVLE   92 (143)
Q Consensus        70 ---N~~dfriPDn~G~qP~depI~~~   92 (143)
                         |.+-|+.||+-||++++-+|+..
T Consensus       114 p~~nkv~~~~~d~~~~s~i~c~~vv~  139 (213)
T KOG4755|consen  114 PEGNKVKCDGPDTGGRSCINCEIVVK  139 (213)
T ss_pred             cCCceeEeccccccccccccHHHHHH
Confidence               66666777777777777666655

>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=97.71  E-value=0.00013  Score=58.04  Aligned_cols=86  Identities=15%  Similarity=0.166  Sum_probs=71.0

Q ss_pred             EEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCCCCCC
Q 032289           18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGIS   97 (143)
Q Consensus        18 VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~~~gp   97 (143)
                      =+++|++.+.+.+.+ |-+        ..|+.+||||.++-...|.+|+.|+=-- +.-||-.|+.|.+-++--+.  -.
T Consensus        62 K~~~sYe~V~ekvpe-l~~--------~~~~~viHL~~Hs~kNtI~ieq~AFsdG-Y~~~D~nG~vPegnkv~~~~--~e  129 (166)
T PF06162_consen   62 KMEVSYEEVDEKVPE-LWK--------EQPDFVIHLASHSVKNTIYIEQKAFSDG-YCQPDKNGCVPEGNKVKCES--EE  129 (166)
T ss_pred             eccchHHHHHHHhHH-HHh--------hCCCeEEEecCCCCcceEEEEehhhcCC-CcCCCCCCcCCCCCeeccCc--cc
Confidence            688999999988844 432        4589999999999999999999998654 45699999999999995552  34


Q ss_pred             cceeecCCcHHHHHHHHhh
Q 032289           98 RSRQAVSFAIMSITTHFGL  116 (143)
Q Consensus        98 ~ayf~ttLPv~~iv~~l~~  116 (143)
                      .... |.+..+++++.+.+
T Consensus       130 ~~lk-t~vdce~Lvkev~E  147 (166)
T PF06162_consen  130 TVLK-TFVDCEELVKEVNE  147 (166)
T ss_pred             cccc-cccCHHHHHHHHHH
Confidence            5666 99999999999876

>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]

Probab=86.19  E-value=1.6  Score=36.20  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=36.0

Q ss_pred             CCCCCCCcccceeecCCCCCCcceeecCCcHHHHHHHHhh----C-----CCccce-----e--ehhhhhh
Q 032289           77 PDQLGWQPQQIPVVLEDGGISRSRQAVSFAIMSITTHFGL----Q-----SRRVTS-----R--CLSMFLS  131 (143)
Q Consensus        77 PDn~G~qP~depI~~~~~~gp~ayf~ttLPv~~iv~~l~~----~-----gipv~~-----~--~~~~~~~  131 (143)
                      -|..|+.|......-+   +|+....+......+++...+    .     |++|+.     |  |.|+|++
T Consensus       107 ~d~~g~vp~~nkv~~~---~~d~~~~s~i~c~~vv~~v~e~~~~~~~~~~gl~V~~s~dagR~lc~y~y~~  174 (213)
T KOG4755|consen  107 KDKCGKVPEGNKVKCD---GPDTGGRSCINCEIVVKDVNERCASDGQKFGGLEVEISEDAGRYLCGYVYYS  174 (213)
T ss_pred             hhhcccccCCceeEec---cccccccccccHHHHHHhhhhhhhhccccCCceEEEEcCcccceechhhhhh
Confidence            3999999999999887   564433388888777766543    2     377776     5  5555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	9e-08
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	1e-07
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	1e-07
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	2e-07
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	2e-07
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	3e-07
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	1e-04

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} Length = 215

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 19/74 (25%), Positives = 33/74 (44%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LPT  K +++ I++T  +N   + + +G   G +    ER A+N      PD   +QP  
Sbjct: 43  LPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPID 102

Query: 87  IPVVLEDGGISRSR 100
             + L+      S 
Sbjct: 103 QAIHLDGAPAYFSN 116

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} PDB: 3rnz_A* 1aug_A Length = 223

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 15  SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATF 74
               +      +L  L + ++         ++  I I VG   G  +   ER A+N    
Sbjct: 39  VSEQVPTVFYKSLAVLREAMKK--------HQPDIIICVGQAGGRMQITPERVAINLNEA 90

Query: 75  LCPDQLGWQPQQIPVV 90
             PD  G QP    + 
Sbjct: 91  RIPDNEGNQPVGEDIS 106

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Length = 208

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LP +    +  + +T    +  I IHVG+  G S  ++ER AVN      PD  G + + 
Sbjct: 41  LPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIED 100

Query: 87  IPVV 90
            P+V
Sbjct: 101 EPIV 104

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Length = 215

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 9   AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRA 68
              T+G   ++       +PT+     S + +          I +G   G     +ER A
Sbjct: 28  HEKTIGEYKIISKQ----VPTVFHKSISVLKEYIEELAPEFIICIGQAGGRPDITIERVA 83

Query: 69  VNEATFLCPDQLGWQPQQIPVVLEDGGISRS 99
           +N       D  G QP  +PVV E      S
Sbjct: 84  INIDDARIADNEGNQPVDVPVVEEGPAAYWS 114

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Length = 206

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LP   K     + +   +    I I++G+  G +  ++ER AVN      PD  G QP+ 
Sbjct: 38  LPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKD 97

Query: 87  IPVV 90
            P+V
Sbjct: 98  EPIV 101

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Length = 220

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LP  +K     + +     +  I I++G+    S   +ER AVN      PD  G+QP  
Sbjct: 42  LPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPID 101

Query: 87  IPVV 90
             + 
Sbjct: 102 EKIE 105

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Length = 192

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query: 45  NEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVV 90
                 +H+G+        LER AVN   F  PD  G   + +P+V
Sbjct: 56  EGPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIV 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	99.97
4gxh_A	216	Pyrrolidone-carboxylate peptidase; structural geno	99.97
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	99.97
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	99.97
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	99.97
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	99.97
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	99.97
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	99.97
4hps_A	228	Pyrrolidone-carboxylate peptidase; structural geno	99.97

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}

Probab=99.97  E-value=1.9e-31  Score=211.44  Aligned_cols=114  Identities=22%  Similarity=0.244  Sum_probs=103.7

Q ss_pred             ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCccccee
Q 032289           10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV   89 (143)
Q Consensus        10 ~~~~~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI   89 (143)
                      +..+ ...+|+|+ +.+.+.+.+++++        .+||+|||+|||+||+.|++||+|+|+.|||+|||+|++|.++||
T Consensus        31 ~~~i-~~~~lPv~-~~~~~~l~~~~~~--------~~pd~vi~~G~a~~r~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i  100 (192)
T 2ebj_A           31 GKPL-RKAVLPVD-AEALGEALEDLHR--------EGPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPI  100 (192)
T ss_dssp             TEEE-EEEEECSC-HHHHHHHHHHHHT--------TCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTCCCCCSBCS
T ss_pred             CcEE-EEEEeccc-ccHHHHHHHHHHH--------hCCCEEEEeccCCCCceEEeEEEEEcCCCccCCCCCCCCCCCCce
Confidence            4444 44569999 9999999888874        789999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           90 VLEDGGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        90 ~~~~~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                      +++   ||++|| |+||+++|+++|++.|+|++-     +++|+|++|++|..
T Consensus       101 ~~~---gp~~~~-t~lp~~~iv~~l~~~g~p~~vS~~AG~ylCN~i~Y~sL~~  149 (192)
T 2ebj_A          101 VPG---GPLALP-ARFPVKPVLARWREAGIPGRPSLSAGSYLCNQAFYLSLYR  149 (192)
T ss_dssp             STT---SCSEEE-CBSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHH
T ss_pred             eCC---CCceeE-cCCCHHHHHHHHHHCCCCEEEeCCCCccHHHHHHHHHHHh
Confidence            998   899999 999999999999999999987     88899988888754

>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}

Probab=99.97  E-value=2e-31  Score=214.74  Aligned_cols=111  Identities=18%  Similarity=0.222  Sum_probs=103.8

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +....|+|+++.+.+.+.++|++        .+|++|||+|||+||+.|++||+|+|..|||+|||+|++|.++||+++ 
T Consensus        38 i~~~~lPv~~~~~~~~l~~~i~~--------~~Pd~vi~~G~a~gr~~i~~Er~A~N~~~~r~pDn~G~~p~~~~i~~~-  108 (216)
T 4gxh_A           38 IEICQIPCIFDTSLEHLYAAVDK--------YQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVD-  108 (216)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCCSBCSSTT-
T ss_pred             EEEEecCccHHHHHHHHHHHHHh--------hCCCEEEEeccCCCCCcceeEEEEcccCcccCCccCCCCCCCCcccCC-
Confidence            34678999999999999998886        789999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                        ||++|| |+||+++|+++|+++|+|++-     +++|+|++|++|-
T Consensus       109 --gp~~~~-t~Lpv~~iv~~l~~~gipa~vS~dAG~ylCN~i~Y~sL~  153 (216)
T 4gxh_A          109 --GPAAYF-SRLPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLH  153 (216)
T ss_dssp             --CCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHH
T ss_pred             --Cchhee-cCCCHHHHHHHHHHCCCCEEEeCCCcccHHHHHHHHHHH
Confidence              899999 999999999999999999976     8888888888874

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A

Probab=99.97  E-value=2.4e-31  Score=215.57  Aligned_cols=112  Identities=17%  Similarity=0.110  Sum_probs=104.2

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +....|+|+++.+.+.+.++|++        .+||+|||+|+|+||+.|++||+|+|.+|+|+|||+|++|.++||.++ 
T Consensus        38 i~~~~lPv~y~~~~~~l~~~i~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~~-  108 (223)
T 3ro0_A           38 IVSEQVPTVFYKSLAVLREAMKK--------HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQG-  108 (223)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTT-
T ss_pred             EEEEEeeeEehhHHHHHHHHHHH--------hCCCEEEEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcCC-
Confidence            44678999999999999888875        789999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                        ||++|| |+||+++|+++|+++|+|++-     +++|+|+||++|-.
T Consensus       109 --Gp~a~~-stLpv~~~v~~l~~~gipa~vS~dAG~yvCN~iyY~sL~~  154 (223)
T 3ro0_A          109 --GPAAYW-TGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDE  154 (223)
T ss_dssp             --SCSEEE-CCSCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHH
T ss_pred             --CCceee-cCCCHHHHHHHHHHCCCCEEEeCCCCcccchHHHHHHHHH
Confidence              899999 999999999999999999976     88888888888764

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A

Probab=99.97  E-value=2.6e-31  Score=212.66  Aligned_cols=112  Identities=27%  Similarity=0.226  Sum_probs=103.4

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++.+.+.+.+++++        .+||+|||+|+|+||+.|++||+|+|..|||+|||+|++|.++||+++ 
T Consensus        36 i~~~~lPv~~~~~~~~l~~~~~~--------~~pd~vi~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~i~~~-  106 (208)
T 1x10_A           36 VFGRVLPVVFGKAKEVLEKTLEE--------IKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG-  106 (208)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTT-
T ss_pred             EEEEEEeeEHHHHHHHHHHHHHH--------hCCCEEEEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCceeCC-
Confidence            34568999999999999888875        689999999999999999999999999999999999999999999988 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                        ||++|| ||||+++|+++|+++|+|++-     +++|+|++|.+|..
T Consensus       107 --gp~~~~-ttlpi~~iv~~l~~~gi~~~vS~~AG~ylCN~i~Y~sL~~  152 (208)
T 1x10_A          107 --APTAYF-STLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHH  152 (208)
T ss_dssp             --SCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHH
T ss_pred             --CCceeE-cCCCHHHHHHHHHhCCCCEEEecCCCcchhhHHHHHHHHH
Confidence              899999 999999999999999999987     88888888887754

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}

Probab=99.97  E-value=3e-31  Score=213.60  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +....|+|+++.+.+.+.+++++        .+|++|||+|+|+||+.|++||+|+|.+|||+|||+|++|.++||.++ 
T Consensus        37 i~~~~lPv~y~~~~~~l~~~~~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~-  107 (215)
T 3lac_A           37 IISKQVPTVFHKSISVLKEYIEE--------LAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEE-  107 (215)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSSTT-
T ss_pred             EEEEEEeeEhHHHHHHHHHHHHh--------hCCCeEEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcCC-
Confidence            45678999999999999888875        789999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                        ||++|| |+||+++|+++|+++|+|++-     +++|+|++|++|-.
T Consensus       108 --Gp~~~~-s~Lpv~~~v~~l~~~gipa~vS~dAG~yvCN~i~Y~sL~~  153 (215)
T 3lac_A          108 --GPAAYW-STLPMKAIVKKLQEEGIPASVSQTAGTFVCNHLFYGLMHE  153 (215)
T ss_dssp             --SCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHH
T ss_pred             --CCceee-cCCCHHHHHHHHHhCCCcEEEcCCCCccccHHHHHHHHHH
Confidence              899999 999999999999999999976     88888888888854

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1

Probab=99.97  E-value=1.9e-31  Score=213.34  Aligned_cols=112  Identities=23%  Similarity=0.219  Sum_probs=103.4

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +....|+|+++.+.+.+.++|++        .+||+|||+|+|+||+.|++||+|+|..|||+|||+|++|.++||+++ 
T Consensus        33 i~~~~lPv~~~~~~~~l~~~~~~--------~~Pd~vi~vG~a~gr~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~-  103 (206)
T 1iu8_A           33 VVGEILPVSFKRAREKLLKVLDD--------VRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEG-  103 (206)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTT-
T ss_pred             EEEEEEEeEHHHHHHHHHHHHHH--------hCCCEEEEcccCCCCceEEEEEEEecCCCCccCCCCCCCCCCCceeCC-
Confidence            34568999999999999888875        689999999999999999999999999999999999999999999988 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                        ||++|| |+||+++|+++|++.|+|++-     +++|+|++|++|..
T Consensus       104 --gp~~~~-t~Lpi~~iv~~l~~~gip~~vS~~AG~ylCN~i~Y~sL~~  149 (206)
T 1iu8_A          104 --GPAAYF-ATIPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHT  149 (206)
T ss_dssp             --CCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHH
T ss_pred             --CCceeE-cCCCHHHHHHHHHhCCCCEEEeCCCCccHhhHHHHHHHHH
Confidence              899999 999999999999999999987     88888888877754

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0

Probab=99.97  E-value=3e-31  Score=213.76  Aligned_cols=112  Identities=17%  Similarity=0.076  Sum_probs=104.1

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++.+.+.+.++|++        .+|++|||+|+|+||+.|++||+|+|.+|+|+|||+|++|.++||.++ 
T Consensus        38 i~~~~lPv~~~~~~~~l~~~i~~--------~~Pd~Vi~vG~a~gr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~-  108 (215)
T 3giu_A           38 IDKLKLPTSFKKVDNIINKTLAS--------NHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHLD-  108 (215)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHH--------SCCSEEEEEEECTTCCSBEEBCEEESCEECSSCCTTSCCCEEECSCTT-
T ss_pred             EEEEEeceehHhHHHHHHHHHHH--------hCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCCCCCCCCCCcccCC-
Confidence            34578999999999999888875        889999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                        ||++|| |+||+++|+++|+++|+|++-     +++|+|+||++|-.
T Consensus       109 --gp~~~~-stLpv~~iv~~l~~~gipa~vS~dAG~yvCN~i~Y~sL~~  154 (215)
T 3giu_A          109 --GAPAYF-SNLPVKAMTQSIINQGLPGALSNSAGTFVCNHTLYHLGYL  154 (215)
T ss_dssp             --SCSEEE-CCSCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHHH
T ss_pred             --Cccccc-cCCCHHHHHHHHHHcCCCEEEeCCCCccccHHHHHHHHHH
Confidence              899999 999999999999999999976     88888888888764

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1

Probab=99.97  E-value=5e-31  Score=213.08  Aligned_cols=113  Identities=22%  Similarity=0.196  Sum_probs=103.9

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++.+.+.+.+++++        .+||+|||+|||+||+.|++||+|+|..|||+|||+|++|.++||+++ 
T Consensus        37 i~~~~lPv~~~~~~~~l~~~i~~--------~~Pd~Vi~vG~aggr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~-  107 (220)
T 1a2z_A           37 VYGRVLPVSVKRATIELKRYLEE--------IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEED-  107 (220)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCTT-
T ss_pred             EEEEEEEeEHHHHHHHHHHHHHH--------hCCCEEEEecCCCCCceEEEEEEEccCCCCCcCCCCCCCCCCCCccCC-
Confidence            34568999999999999888875        689999999999999999999999999999999999999999999988 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHhh
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMKT  138 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~~  138 (143)
                        ||++|| |+||+++|+++|+++|+|++-     +++|+|++|++|...
T Consensus       108 --gp~~~~-ttLpi~~iv~~l~~~gip~~vS~~AG~ylCN~i~Y~sL~~~  154 (220)
T 1a2z_A          108 --APLAYM-ATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFS  154 (220)
T ss_dssp             --SCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHH
T ss_pred             --CCceeE-cCCCHHHHHHHHHHCCCCEEEeCCCCcchhhHHHHHHHHHH
Confidence              899999 999999999999999999987     888888888877643

>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A

Probab=99.97  E-value=4.3e-31  Score=214.85  Aligned_cols=112  Identities=18%  Similarity=0.214  Sum_probs=104.1

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +....|+|+++.+.+.+.++|++        .+|++|||+|+|+||+.|++||+|+|++|||+|||+|++|.++||.++ 
T Consensus        59 i~~~~lPv~y~~~~~~l~~~i~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~-  129 (228)
T 4hps_A           59 IEICQIPCIFDTSLEHLYAAVDK--------YQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVD-  129 (228)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTT-
T ss_pred             EEEEEcceEeHHHHHHHHHHHHh--------hCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCcCcCC-
Confidence            45678999999999999888875        789999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHHh
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLMK  137 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~~  137 (143)
                        ||++|| |+||+++|+++|++.|+|++-     +++|+|++|++|-.
T Consensus       130 --Gp~a~~-stLpvk~~v~~l~~~Gipa~vS~dAGtYvCN~iyY~sL~~  175 (228)
T 4hps_A          130 --GPAAYF-SRLPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLHY  175 (228)
T ss_dssp             --CCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHH
T ss_pred             --CCceee-eCCCHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHH
Confidence              899999 999999999999999999976     88888888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1iofa_	208	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	2e-09
d1auga_	210	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	4e-09
d1iu8a_	206	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	6e-08
d1a2za_	220	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	3e-06

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 9   AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRA 68
            G+ +G   V             + LE ++ +   +    I IHVG+  G S  ++ER A
Sbjct: 27  DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEIKPD----IAIHVGLAPGRSAISIERIA 82

Query: 69  VNEATFLCPDQLGWQPQQIPVV 90
           VN      PD  G + +  P+V
Sbjct: 83  VNAIDARIPDNEGKKIEDEPIV 104

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

 Score = 50.8 bits (121), Expect = 4e-09
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 9   AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRA 68
            G   G  +++           L  L  +I      ++  I I VG   G  +   ER A
Sbjct: 29  NGAAEGPASIVSEQVPTVFYKSLAVLREAIK----KHQPDIIICVGQAGGRMQITPERVA 84

Query: 69  VNEATFLCPDQLGWQPQQIPVVLE 92
           +N      PD  G QP    +   
Sbjct: 85  INLNEARIPDNEGNQPVGEDISQG 108

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.3 bits (112), Expect = 6e-08
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 5   EGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL 64
           E L   +      +L  +   A   LLK L+             I I++G+  G +  ++
Sbjct: 24  EALSERIPEVVGEILPVSFKRAREKLLKVLDD--------VRPDITINLGLAPGRTHISV 75

Query: 65  ERRAVNEATFLCPDQLGWQPQQIPVV 90
           ER AVN      PD  G QP+  P+V
Sbjct: 76  ERVAVNMIDARIPDNDGEQPKDEPIV 101

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSK 61
              + +   +  G   VL  +   A   L + LE          +  I I++G+    S 
Sbjct: 27  FDRKQIGNAMVYGR--VLPVSVKRATIELKRYLEE--------IKPEIVINLGLAPTYSN 76

Query: 62  FALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISR 98
             +ER AVN      PD  G+QP    +  ED  ++ 
Sbjct: 77  ITVERIAVNIIDARIPDNDGYQPIDEKIE-EDAPLAY 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1a2za_	220	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.96
d1iofa_	208	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.94
d1iu8a_	206	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.94
d1auga_	210	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.94

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.96  E-value=1.5e-29  Score=202.01  Aligned_cols=111  Identities=23%  Similarity=0.205  Sum_probs=102.9

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++++.+.+.+++++        .+|++|||||+++||+.|+|||+|+|..|+++|||+|++|.++||.++ 
T Consensus        37 i~~~~LPV~~~~~~~~l~~~~~~--------~~pd~vi~~G~a~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~-  107 (220)
T d1a2za_          37 VYGRVLPVSVKRATIELKRYLEE--------IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEED-  107 (220)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCTT-
T ss_pred             EEEEEcceeHHHHHHHHHHHHHh--------CCceEEEEEeecCCCceeEEEEEEEeCCCCccccccCCccCCCCccCC-
Confidence            45689999999999999888875        789999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                        ||.+|| ||||+++|+++|++.|+|++-     +++|||.+|.+|-
T Consensus       108 --gp~~~~-ttlp~~~i~~~l~~~gi~~~iS~dAG~YlCN~~~Y~sl~  152 (220)
T d1a2za_         108 --APLAYM-ATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLH  152 (220)
T ss_dssp             --SCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHH
T ss_pred             --CCceee-cCCCHHHHHHHHHhcCCCeEEcCCHHHhhhhHHHHHHHH
Confidence              899999 999999999999999999987     7777777777773

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=1.9e-27  Score=187.40  Aligned_cols=111  Identities=26%  Similarity=0.220  Sum_probs=103.2

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++++.+.+.+.+++        .+|++|||+|++++++.|+|||+|+|..++++|||+|++|.+++|+++ 
T Consensus        36 i~~~~LpV~~~~~~~~l~~l~~~--------~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~-  106 (208)
T d1iofa_          36 VFGRVLPVVFGKAKEVLEKTLEE--------IKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG-  106 (208)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTT-
T ss_pred             EEEEecceeHHHHHHHHHHHHHh--------CCCcEEEEEeecCCcceEEeEeEEeccCCCccCCccCCcCCCCCccCC-
Confidence            45789999999999999777775        789999999999999999999999999999999999999999999988 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                        ||.+|+ |+||+++|++++++.|+||+-     +.+|+|+||++|.
T Consensus       107 --g~~~~~-t~lp~~~l~~~l~~~g~~v~iS~daG~YlCN~~yY~sL~  151 (208)
T d1iofa_         107 --APTAYF-STLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLH  151 (208)
T ss_dssp             --SCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHH
T ss_pred             --Ccceee-cCCCHHHHHHHHHhcCCCeeecCchhhhhhhHHHHHHHH
Confidence              899999 999999999999999999987     8888888888874

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.94  E-value=1.8e-27  Score=187.49  Aligned_cols=110  Identities=24%  Similarity=0.226  Sum_probs=103.1

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++++.+.+.+.+++        .+|++|||||+++|++.|+||++|+|..++++|||+|++|.+++|.++ 
T Consensus        33 i~~~~LpV~~~~~~~~~~~~~~~--------~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~-  103 (206)
T d1iu8a_          33 VVGEILPVSFKRAREKLLKVLDD--------VRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEG-  103 (206)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTT-
T ss_pred             EEEEEeeccHHHHHHHHHHHHHh--------cCCcEEEEEEecCCccceeeEEEEEecCCCccccCCCCCCCCCcccCC-
Confidence            56789999999999999887775        789999999999999999999999999999999999999999999887 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHH
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQL  135 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~  135 (143)
                        ||.+|+ ||||+++|+++|++.|+||+-     +++|+|.||++|
T Consensus       104 --g~~~~~-ttlp~~~i~~~l~~~g~~v~~S~daG~YlCN~~yY~sL  147 (206)
T d1iu8a_         104 --GPAAYF-ATIPTREIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTL  147 (206)
T ss_dssp             --CCSEEE-CCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHH
T ss_pred             --Ccccee-cCCCHHHHHHHHHhcCCCeEEcCcHHhhhhhHHHHHHH
Confidence              899999 999999999999999999987     888888888887

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=99.94  E-value=9e-27  Score=183.79  Aligned_cols=111  Identities=17%  Similarity=0.107  Sum_probs=103.0

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEecccCCCCCcccceeeeecCCCCCCCCCCCCcccceeecCC
Q 032289           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (143)
Q Consensus        14 ~~~~VLeVS~~~a~~~L~~~ie~~v~~~~~~~~p~vvLhlGva~Gr~~i~lErvAiN~~dfriPDn~G~qP~depI~~~~   93 (143)
                      +...+|+|+++++.+.+.+.+++        .+|++|||||++++++.|+||++|+|..++++|||+|++|.+++|.++ 
T Consensus        38 i~~~~lpV~~~~~~~~~~~~~~~--------~~p~~vih~G~~~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~-  108 (210)
T d1auga_          38 IVSEQVPTVFYKSLAVLREAIKK--------HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQG-  108 (210)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTT-
T ss_pred             EEEEEccccHHHHHHHHHHHHHh--------CCCcEEEEEEecCCcceEEeeeEeeccCcccccccCCCCCCCCcccCC-
Confidence            46689999999999999888875        789999999999999999999999999999999999999999999988 


Q ss_pred             CCCCcceeecCCcHHHHHHHHhhCCCccce-----eehhhhhhHHHHH
Q 032289           94 GGISRSRQAVSFAIMSITTHFGLQSRRVTS-----RCLSMFLSSQQLM  136 (143)
Q Consensus        94 ~~gp~ayf~ttLPv~~iv~~l~~~gipv~~-----~~~~~~~~~~~~~  136 (143)
                        ||++|+ |+||+++|+++|++.|+|++-     +++|+|.+|.+|.
T Consensus       109 --g~~~~~-t~lp~~~l~~~l~~~g~~~~~S~daG~YlCN~~yY~sL~  153 (210)
T d1auga_         109 --GPAAYW-TGLPIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMD  153 (210)
T ss_dssp             --SCSEEE-CCSCHHHHHHHHHHTTCCBCCBSCCCSSHHHHHHHHHHH
T ss_pred             --CCceeE-cCCCHHHHHHHHHhcCCCeEEcCCCCccchhhHHHHHHH
Confidence              899999 999999999999999999987     7777777777774