Citrus Sinensis ID: 032292

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHcccEEEEEEcHHcHHHHHHHHHccccccccccccccEEEEEccccccHHHHHHHHcccccccEEEEEccccccEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccHHEEEEEHccHHHHHHHHHHccccccccccccEEEEEEEcccHcHHHHHHHHHHHHccccEEEEEcccccccEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHcc
Coil and Loop (DISEMBL)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTaltipedgqsenegsfdyafvdadkdnyCNYHERLMKLLKVGGiavydntlwggtvavpeeqvpdhfrgsSRQAILDLNrsladdprvqlSHVALGDGITICRRIF
Flexible Loop (DISEMBL)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSladdprvqlshvalgdgiticrrif
Low Complexity Region (SEG)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered region (IsUnstruct)
*LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE*******GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV**********AILDLNRSLADDPRVQLSHVALGDGITICRR**
Disordered Region (DISOPRED)
***LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISEMBL)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISPRO)
**LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.944	0.581	0.533	3e-45
Q43161	241	Caffeoyl-CoA O-methyltran	N/A	no	0.944	0.560	0.45	3e-39
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.944	0.581	0.440	1e-37
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.944	0.546	0.441	2e-37
O65162	254	Caffeoyl-CoA O-methyltran	N/A	no	0.951	0.535	0.422	3e-37
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.951	0.550	0.45	1e-36
O65862	247	Caffeoyl-CoA O-methyltran	yes	no	0.951	0.550	0.45	1e-36
O04854	249	Caffeoyl-CoA O-methyltran	N/A	no	0.951	0.546	0.441	2e-36
O81185	246	Caffeoyl-CoA O-methyltran	N/A	no	0.951	0.552	0.441	2e-36
O49499	259	Caffeoyl-CoA O-methyltran	no	no	0.951	0.525	0.422	2e-36

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 116/180 (64%), Gaps = 45/180 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           GQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG                      
Sbjct: 54  GQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKA 113

Query: 46  ---------QSE-------------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                    +SE             NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct: 114 GVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIV 173

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
           YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 174 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q43161|CAMT_STELP Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 107/180 (59%), Gaps = 45/180 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQL++ +L+ V  KKTIE+GVFTGYSLL TAL+IP+DG+                     
Sbjct: 63  GQLLSFMLKTVKPKKTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYNVGLALIKKA 122

Query: 47  -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                     +GS+D+AFVDADK NY NYHERL++L+KVGGI  
Sbjct: 123 GVESKISFIVSDAMTLLDDLLADGRYQGSYDFAFVDADKTNYVNYHERLIELVKVGGIIA 182

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
           YDNTLWGGTVA+PE +VPD F  ++   +  LN  L  D R+ ++H+ +GDGIT CRR++
Sbjct: 183 YDNTLWGGTVALPESEVPD-FMKNNWVCVTKLNEILGSDARIDIAHLPVGDGITFCRRVY 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Stellaria longipes (taxid: 19744)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/177 (44%), Positives = 107/177 (60%), Gaps = 42/177 (23%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------- 46
            G  ++ML++++NAK TIEIGVFTGYSLL TAL +PEDG+                    
Sbjct: 56  EGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK 115

Query: 47  ---------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 85
                                  ++  FD+AF DADK +Y N+HERL+KL+KVGGI  +D
Sbjct: 116 AGVDHKINFIHSDGLKALDQLVNDKCEFDFAFADADKSSYVNFHERLLKLVKVGGIIAFD 175

Query: 86  NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           NTLW G VA  E+ VP+H R   R A+++ N+ LA DPRV++S +++GDGIT+CRR+
Sbjct: 176 NTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGITLCRRL 231

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 105/179 (58%), Gaps = 44/179 (24%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+                     
Sbjct: 68  GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA 127

Query: 47  -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                   +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  
Sbjct: 128 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 187

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65162|CAMT_MESCR Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  153 bits (386), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 106/180 (58%), Gaps = 44/180 (24%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------- 46
            GQ + MLL+L+NAK TIEIGV+TGYSLL +AL +P+DG+                    
Sbjct: 74  EGQFLNMLLKLINAKNTIEIGVYTGYSLLASALALPDDGKILAMDINRENYELGLPVIQK 133

Query: 47  ------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 82
                                   ++N GSFD+AFVDADKDNY NYH+RL+ L+K+GG+ 
Sbjct: 134 AGVAHKIDFREGPALPVLDLLIEDAKNHGSFDFAFVDADKDNYGNYHKRLIDLVKIGGVI 193

Query: 83  VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
            YDNTLW G+VA P +     +    R  +++ N+++A DPRV++  + +GDGIT+CRRI
Sbjct: 194 GYDNTLWNGSVAAPADAPMRKYVRYYRDFVMEFNKAIAADPRVEICQLPVGDGITLCRRI 253

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 105/180 (58%), Gaps = 44/180 (24%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------SEN---------- 49
            GQ + MLL+LVNAK T+EIGV+TGYSLL TAL IPEDG+        EN          
Sbjct: 67  EGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQK 126

Query: 50  ---------------------------EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 82
                                       GSFD+ FVDADKDNY NYH+RL++L+KVGG+ 
Sbjct: 127 AGVAHKIDFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIELVKVGGLI 186

Query: 83  VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
            YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 187 GYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/180 (45%), Positives = 105/180 (58%), Gaps = 44/180 (24%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------SEN---------- 49
            GQ + MLL+LVNAK T+EIGV+TGYSLL TAL IPEDG+        EN          
Sbjct: 67  EGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQK 126

Query: 50  ---------------------------EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 82
                                       GSFD+ FVDADKDNY NYH+RL++L+KVGG+ 
Sbjct: 127 AGVAHKIDFKEGPALPVLDQMIEDGKCHGSFDFIFVDADKDNYINYHKRLIELVKVGGLI 186

Query: 83  VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
            YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 187 GYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04854|CAMT_EUCGU Caffeoyl-CoA O-methyltransferase OS=Eucalyptus gunnii PE=2 SV=1

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 106/179 (59%), Gaps = 43/179 (24%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------SEN---------- 49
            GQ + MLL+L+NAK T+EIGVFTGYSLL TAL +P+DG+        EN          
Sbjct: 67  EGQFLNMLLKLINAKNTMEIGVFTGYSLLATALALPDDGKILAMDINRENYELGLPVIQK 126

Query: 50  --------------------------EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                     +GSFD+ FVDADKDNY NYH+RL++L+KVGG+  
Sbjct: 127 AGVADKIDFREGPALPILDQLIEDGKQGSFDFIFVDADKDNYLNYHKRLIELVKVGGLIG 186

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 187 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 245

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Eucalyptus gunnii (taxid: 3933)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O81185|CAMT1_EUCGL Caffeoyl-CoA O-methyltransferase 1 OS=Eucalyptus globulus GN=CCOMT PE=2 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 106/179 (59%), Gaps = 43/179 (24%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------SEN---------- 49
            GQ + MLL+L+NAK T+EIGVFTGYSLL TAL +P+DG+        EN          
Sbjct: 67  EGQFLNMLLKLINAKNTMEIGVFTGYSLLATALALPDDGKILAMDINRENYELGLPVIQK 126

Query: 50  --------------------------EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                     +GSFD+ FVDADKDNY NYH+RL++L+KVGG+  
Sbjct: 127 AGVADKIDFREGPALPILDQLIEDGKQGSFDFIFVDADKDNYLNYHKRLIELVKVGGLIG 186

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 187 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 245

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O49499|CAMT4_ARATH Caffeoyl-CoA O-methyltransferase 1 OS=Arabidopsis thaliana GN=CCOAOMT1 PE=1 SV=1

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 104/180 (57%), Gaps = 44/180 (24%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------- 46
            GQ + ML++LVNAK T+EIGV+TGYSLL TAL +PEDG+                    
Sbjct: 79  EGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEK 138

Query: 47  ------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 82
                                    +N G++D+ FVDADKDNY NYH+RL+ L+K+GG+ 
Sbjct: 139 AGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVI 198

Query: 83  VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
            YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 199 GYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
255546215	228	o-methyltransferase, putative [Ricinus c	0.944	0.592	0.566	1e-47
224122628	236	predicted protein [Populus trichocarpa]	0.944	0.572	0.561	2e-46
255546213	228	o-methyltransferase, putative [Ricinus c	0.937	0.587	0.558	1e-45
171849075	237	Chain A, Crystal Structure Of Pfomt, Phe	0.958	0.578	0.510	2e-45
297803474	238	hypothetical protein ARALYDRAFT_913940 [	0.944	0.567	0.522	6e-44
297738705	236	unnamed protein product [Vitis vinifera]	0.937	0.567	0.558	1e-43
18416703	232	putative caffeoyl-CoA O-methyltransferas	0.944	0.581	0.533	2e-43
225444995	282	PREDICTED: probable caffeoyl-CoA O-methy	0.937	0.475	0.558	2e-43
4539418	242	caffeoyl-CoA O-methyltransferase-like pr	0.944	0.557	0.533	2e-43
147799759	1625	hypothetical protein VITISV_020117 [Viti	0.937	0.082	0.558	3e-43

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/180 (56%), Positives = 121/180 (67%), Gaps = 45/180 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           GQL+A+LL+LVNAKKTIE+GVFTGYSLLLTAL+IPEDG                      
Sbjct: 50  GQLIALLLQLVNAKKTIEVGVFTGYSLLLTALSIPEDGKITAIDVNRETYDIGLPIIRKA 109

Query: 46  ---------QSE-------------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                    +SE             NEGSFD+AFVDADK NY NYHERL+KLLKVGGI V
Sbjct: 110 GVEHKIDFMESEALPVLDKLLKDHGNEGSFDFAFVDADKINYWNYHERLLKLLKVGGIVV 169

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
           YDNTLWGGTVA+PEE+ P+  R   RQ  ++LN+ LA D R+Q+SH +LGDGITICRR++
Sbjct: 170 YDNTLWGGTVAIPEEEAPEAMR-MGRQLTIELNKLLAADSRIQISHASLGDGITICRRLY 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/180 (56%), Positives = 118/180 (65%), Gaps = 45/180 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           GQLMAMLL+LVNA+KTIE+GVFTGYSLLLTAL+IP+DG                      
Sbjct: 58  GQLMAMLLKLVNAQKTIEVGVFTGYSLLLTALSIPKDGKITAIDVNREAYEIGLPIIRNA 117

Query: 46  ---------QSE-------------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                    +SE             NEGSFD+AFVDADK NY NYHERLMKLLKVGGI V
Sbjct: 118 GVEHKINFIESEAQPILDKLLEDHGNEGSFDFAFVDADKVNYWNYHERLMKLLKVGGIVV 177

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
           YDNTLWGGTVA+ EE  P++ + + RQ  ++ N+ LA D RVQ+SH   GDGITICRRI+
Sbjct: 178 YDNTLWGGTVALSEESTPENMK-AGRQLTIEFNKLLAADSRVQISHAPSGDGITICRRIY 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 117/179 (65%), Gaps = 45/179 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           GQ MAMLL+LVNAKKTIE+GVFTGYSLLLTAL+IPEDG                      
Sbjct: 50  GQFMAMLLQLVNAKKTIEVGVFTGYSLLLTALSIPEDGKIVAIDVDREAYEIGLPIIRKA 109

Query: 46  ---------QSE-------------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                    +SE             NE SFD+AFVDADK NY NYHERL+KL+KVGGI +
Sbjct: 110 GVEHKIDFMESEALPVLDKLLKEHGNESSFDFAFVDADKINYWNYHERLLKLVKVGGIVI 169

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDN+LW G+VAVPEE+ P+H R   RQ  ++ N+ LA D RVQ+SH +LGDGITICRRI
Sbjct: 170 YDNSLWRGSVAVPEEEAPEHLR-FCRQLTIEHNKFLAADSRVQISHASLGDGITICRRI 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171849075|pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|171849076|pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|37720881|gb|AAN61072.1| O-methyltransferase [Mesembryanthemum crystallinum]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 118/182 (64%), Gaps = 45/182 (24%)

Query: 6   IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------- 46
           + GQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+                   
Sbjct: 57  LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR 116

Query: 47  -------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 81
                                     E+EGS+D+ FVDADK NY  YHERLMKL+KVGGI
Sbjct: 117 KAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGI 176

Query: 82  AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
             YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR
Sbjct: 177 VAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR 235

Query: 142 IF 143
           ++
Sbjct: 236 LY 237

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803474|ref|XP_002869621.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata] gi|297315457|gb|EFH45880.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 115/180 (63%), Gaps = 45/180 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQLM MLL+LVNA+KTIE+GVFTGYSLLLTALT+PEDG+                     
Sbjct: 60  GQLMGMLLKLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDVNRDSYEIGLPVIKKV 119

Query: 47  -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                    NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct: 120 GVEHKIDFRESEALPALDELLNDKANEGGFDFAFVDADKVNYWNYHERLIRLIKVGGIIV 179

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
           YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 180 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738705|emb|CBI27950.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 114/179 (63%), Gaps = 45/179 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           GQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG                      
Sbjct: 58  GQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKA 117

Query: 46  ----------------------QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                 + ENEG FD+AFVDADK NY NYHERLMKLLK+GGI V
Sbjct: 118 GVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKLLKMGGIVV 177

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 178 YDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416703|ref|NP_567739.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|30580368|sp|Q9C5D7.1|CAMT3_ARATH RecName: Full=Probable caffeoyl-CoA O-methyltransferase At4g26220; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase; Short=CCoAMT; Short=CCoAOMT gi|13430810|gb|AAK26027.1|AF360317_1 putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|15810549|gb|AAL07162.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|332659772|gb|AEE85172.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 116/180 (64%), Gaps = 45/180 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           GQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG                      
Sbjct: 54  GQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKA 113

Query: 46  ---------QSE-------------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                    +SE             NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct: 114 GVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIV 173

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
           YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 174 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444995|ref|XP_002279921.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Vitis vinifera]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 114/179 (63%), Gaps = 45/179 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           GQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG                      
Sbjct: 104 GQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKA 163

Query: 46  ----------------------QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                 + ENEG FD+AFVDADK NY NYHERLMKLLK+GGI V
Sbjct: 164 GVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKLLKMGGIVV 223

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 224 YDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539418|emb|CAB38951.1| caffeoyl-CoA O-methyltransferase-like protein [Arabidopsis thaliana] gi|7269473|emb|CAB79477.1| caffeoyl-CoA O-methyltransferase-like protein [Arabidopsis thaliana]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/180 (53%), Positives = 116/180 (64%), Gaps = 45/180 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           GQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG                      
Sbjct: 64  GQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKA 123

Query: 46  ---------QSE-------------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                    +SE             NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct: 124 GVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIV 183

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
           YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 184 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 114/179 (63%), Gaps = 45/179 (25%)

Query: 8    GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
            GQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG                      
Sbjct: 1447 GQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKA 1506

Query: 46   ----------------------QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                  + ENEG FD+AFVDADK NY NYHERLMKLLK+GGI V
Sbjct: 1507 GVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKXNYKNYHERLMKLLKMGGIVV 1566

Query: 84   YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
            YDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 1567 YDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 1624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.657	0.405	0.642	7.6e-46
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.622	0.383	0.577	4e-39
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.664	0.325	0.526	1.9e-37
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.622	0.381	0.533	5.7e-36
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.629	0.310	0.468	1.4e-27
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.664	0.366	0.515	1.2e-24
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.706	0.400	0.533	5.3e-24
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.594	0.318	0.404	1.4e-23
DICTYBASE|DDB_G0271590	251	omt1 "O-methyltransferase fami	0.629	0.358	0.401	6e-22
UNIPROTKB|E2RDX6	262	COMTD1 "Uncharacterized protei	0.601	0.328	0.391	3.3e-21

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 61/95 (64%), Positives = 77/95 (81%)

Query:    49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSS 108
             NEG FD+AFVDADK NY NYHERL++L+KVGGI VYDNTLWGG+VA P+   P+ +R   
Sbjct:   139 NEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEV 197

Query:   109 RQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
             ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct:   198 KKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 52/90 (57%), Positives = 71/90 (78%)

Query:    53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI 112
             FD+AF DADK +Y N+HERL+KL+KVGGI  +DNTLW G VA  E+ VP+H R   R A+
Sbjct:   143 FDFAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAEDEDGVPEHMR-EYRAAL 201

Query:   113 LDLNRSLADDPRVQLSHVALGDGITICRRI 142
             ++ N+ LA DPRV++S +++GDGIT+CRR+
Sbjct:   202 IEFNKKLALDPRVEVSQISIGDGITLCRRL 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 288 (106.4 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 50/95 (52%), Positives = 70/95 (73%)

Query:    48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGS 107
             ENEG FD+AFVDADK NY  YHERL++L++ GG+  YDNTLWGG+VA+ ++ V + F   
Sbjct:   197 ENEGKFDFAFVDADKGNYGEYHERLLRLVRAGGVLAYDNTLWGGSVALEDDSVLEEFDQD 256

Query:   108 SRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
              R++I+  N  +A DPRV+   + + DGIT+CRR+
Sbjct:   257 IRRSIVAFNAKIAGDPRVEAVQLPVSDGITLCRRL 291

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 48/90 (53%), Positives = 71/90 (78%)

Query:    53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI 112
             +D+AFVDADK NY  + E+L+KL+KVGGI  +DNTLW GT+   E +VP H R + R+A+
Sbjct:   144 YDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDNTLWFGTLIQKENEVPGHMR-AYREAL 202

Query:   113 LDLNRSLADDPRVQLSHVALGDGITICRRI 142
             L+ N+ LA DPRV+++ +++GDG+T+CRR+
Sbjct:   203 LEFNKILARDPRVEIAQISIGDGLTLCRRL 232

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 45/96 (46%), Positives = 62/96 (64%)

Query:    46 QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFR 105
             Q+  E S+D+AF+DADK  Y  Y E L++L++VGG+ V DN LW G VA  +  V D   
Sbjct:   200 QNGEESSYDFAFLDADKAMYQEYFESLLRLVRVGGVIVIDNVLWHGWVA--DSTVNDERT 257

Query:   106 GSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
              S R    + N+ L DD RV +S V++GDG+TICR+
Sbjct:   258 ISLR----NFNKKLMDDQRVSISMVSIGDGMTICRK 289

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 49/95 (51%), Positives = 70/95 (73%)

Query:    48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGS 107
             +N G++D+ FVDADKDNY NYH+RL+ L+K+GG+  YDNTLW G+V  P +     +   
Sbjct:   164 KNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRY 223

Query:   108 SRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
              R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct:   224 YRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 55/103 (53%), Positives = 73/103 (70%)

Query:    41 IPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ- 99
             + E+  +  E +FD+AFVDADK NY  YHE+L++L++VGG  VYDNTLW GTVA+P +  
Sbjct:   150 LAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGHIVYDNTLWAGTVALPPDTP 209

Query:   100 VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
             + D  R  S  AI DLN  LA DPR+ +  +A+ DGITICRR+
Sbjct:   210 LSDLDRRFS-VAIRDLNSRLAADPRIDVCQLAIADGITICRRL 251

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
 Identities = 38/94 (40%), Positives = 58/94 (61%)

Query:    45 GQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF 104
             G++E   +FD+AF+DADK++Y  Y+E+ ++L+K GGI   DN L  G V  P +   D  
Sbjct:   179 GEAE---TFDFAFIDADKESYNEYYEKCLRLIKKGGIIAIDNVLRCGMVLKPRK---DDL 232

Query:   105 RGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 138
                + Q+I  LN  L  D RV +S + +GDG+T+
Sbjct:   233 ---ATQSIHHLNEKLVRDARVNISMIPMGDGVTL 263

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0271590 omt1 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 165 (63.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
 Identities = 43/107 (40%), Positives = 65/107 (60%)

Query:    43 EDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV------P 96
             ++G+S   G+FD+ F+DADKD+Y  Y+E  +KL++ GGI  +DN L+ G   V      P
Sbjct:   147 DNGES---GTFDFIFIDADKDSYDAYYELSLKLIRKGGIIAFDNILFFGATLVDHDSKKP 203

Query:    97 EEQVPDHFRGS-SRQAILD----LNRSLADDPRVQLSHVALGDGITI 138
             E+Q+   F G  S Q ++D    LN  +A+D RV  + + L DGIT+
Sbjct:   204 EDQI---FLGCPSFQRMVDALKLLNEKIANDERVIKTMLPLSDGITL 247

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2RDX6 COMTD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 161 (61.7 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
 Identities = 36/92 (39%), Positives = 54/92 (58%)

Query:    51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQ 110
             G+FD A VDADK+N   Y+ER ++LL+ GG+    + LW G V  P+   P   R    +
Sbjct:   177 GTFDVAVVDADKENCAAYYERCLQLLRSGGVLAVLSVLWRGEVLQPQ---P---RDVQAR 230

Query:   111 AILDLNRSLADDPRVQLSHVALGDGITICRRI 142
              + +LN  +  D RV +S + LGDG+T+  +I
Sbjct:   231 CVQNLNERILRDARVHISLLPLGDGLTLAFKI 262

GO:0008171 "O-methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_1450034 hypothetical protein (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	2e-59
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	4e-59
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	1e-48
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	5e-32
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	1e-28

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  182 bits (463), Expect = 2e-59
 Identities = 76/178 (42%), Positives = 102/178 (57%), Gaps = 49/178 (27%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQ ++MLL+L+ AK+T+EIGVFTGYSLL TAL +PEDG+                     
Sbjct: 33  GQFLSMLLKLIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPEAYEIGLPFIQKA 92

Query: 47  ----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84
                                  +  G FD+ FVDADK NY NY+ERL++L+KVGG+   
Sbjct: 93  GVADKISFRLGDALPTLEELVKDKPLGEFDFIFVDADKSNYPNYYERLLELVKVGGLIAI 152

Query: 85  DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           DNTLW G VA P+++VP          + +LN+ LA D RV++S + +GDGIT+CRRI
Sbjct: 153 DNTLWFGKVAEPDDEVPKT------VRVRELNKLLASDERVEISMLPVGDGITLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  182 bits (463), Expect = 4e-59
 Identities = 77/179 (43%), Positives = 112/179 (62%), Gaps = 44/179 (24%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           G  ++ML++++NAK T+EIGVFTGYSLL TAL +PEDG+                     
Sbjct: 57  GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA 116

Query: 47  ----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84
                                 ++ +  FD+AFVDADK NY ++HE+L+KL+KVGGI  +
Sbjct: 117 GVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176

Query: 85  DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 143
           DNTLW G VA  E++VP+H R + R+A+L+ N+ LA DPRV++S +++GDG+T+CRR+ 
Sbjct: 177 DNTLWFGFVAQEEDEVPEHMR-AYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV 234

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  155 bits (394), Expect = 1e-48
 Identities = 76/179 (42%), Positives = 103/179 (57%), Gaps = 44/179 (24%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQ + MLL+L+NAK T+EIGV+TGYSLL TAL +PEDG+                     
Sbjct: 68  GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA 127

Query: 47  -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                   +  G+FD+ FVDADKDNY NYH+RL+ L+KVGG+  
Sbjct: 128 GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIG 187

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Length = 247

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  114 bits (286), Expect = 5e-32
 Identities = 65/178 (36%), Positives = 92/178 (51%), Gaps = 49/178 (27%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------------------- 45
             QL+AML++++ A++ IE+GV+TGYS L  AL +PE G                     
Sbjct: 106 QAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL 165

Query: 46  ----------------------QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                 Q+    S+D+AFVDADK  Y +Y E L++L++VGG+ V
Sbjct: 166 AGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIV 225

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
            DN LW G VA P   V D    +   +I + N+ L DD RV +S V +GDG+TICR+
Sbjct: 226 MDNVLWHGRVADP--LVND----AKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRK 277

Length = 278

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  103 bits (260), Expect = 1e-28
 Identities = 55/174 (31%), Positives = 77/174 (44%), Gaps = 44/174 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
           G L+ +L RL   K+ +EIG   GYS L  AL +P+DG                      
Sbjct: 48  GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA 107

Query: 46  ------------------QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 87
                                 +GSFD  F+DADK +Y  Y ER + LL+ GG+ V DN 
Sbjct: 108 GVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNV 167

Query: 88  LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
           L+GG VA P  +       +  + + D N  L +DPR     + LGDG+ + R+
Sbjct: 168 LFGGRVADPSIRDAR----TQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRK 217

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
PLN02476	278	O-methyltransferase	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.24
PLN03075	296	nicotianamine synthase; Provisional	99.21
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.19
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.19
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.18
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.16
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.16
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.15
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.15
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.15
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.13
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.13
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.12
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.1
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.09
PRK04457	262	spermidine synthase; Provisional	99.09
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.08
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.07
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.07
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.06
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.05
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.04
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.02
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.01
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.0
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.98
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.97
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.97
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.97
PRK08317	241	hypothetical protein; Provisional	98.97
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.96
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.96
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.96
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.95
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.95
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.95
PRK07402	196	precorrin-6B methylase; Provisional	98.94
PLN02244	340	tocopherol O-methyltransferase	98.93
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.91
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.9
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.9
PRK04266	226	fibrillarin; Provisional	98.89
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.88
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.87
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.87
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.86
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.86
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.85
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.85
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.85
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.84
PLN02336	475	phosphoethanolamine N-methyltransferase	98.83
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.82
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.81
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.81
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.81
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.8
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.79
PRK11207	197	tellurite resistance protein TehB; Provisional	98.78
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.78
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.77
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.76
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.76
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.76
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.75
TIGR00438	188	rrmJ cell division protein FtsJ.	98.72
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.72
PRK00811	283	spermidine synthase; Provisional	98.72
PRK12335	287	tellurite resistance protein TehB; Provisional	98.7
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.69
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.69
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.68
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.68
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.68
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.67
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.67
PTZ00146	293	fibrillarin; Provisional	98.66
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.66
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.66
PLN02336	475	phosphoethanolamine N-methyltransferase	98.65
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.64
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.64
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.63
PLN02366	308	spermidine synthase	98.63
PRK06922	677	hypothetical protein; Provisional	98.62
PRK01581	374	speE spermidine synthase; Validated	98.61
PLN02490	340	MPBQ/MSBQ methyltransferase	98.6
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.6
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.58
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.57
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.55
PRK05785	226	hypothetical protein; Provisional	98.54
COG4123	248	Predicted O-methyltransferase [General function pr	98.51
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.5
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.49
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.49
PRK14968	188	putative methyltransferase; Provisional	98.49
PRK14967	223	putative methyltransferase; Provisional	98.49
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.48
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.48
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.46
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.45
PRK06202	232	hypothetical protein; Provisional	98.44
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.43
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.43
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.42
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.39
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.39
KOG2899	288	consensus Predicted methyltransferase [General fun	98.37
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.37
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	98.36
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.35
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.33
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.33
KOG2361	264	consensus Predicted methyltransferase [General fun	98.31
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.31
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.31
PLN02823	336	spermine synthase	98.3
PRK03612	521	spermidine synthase; Provisional	98.28
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.25
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.22
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.22
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.18
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.15
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.12
COG2890	280	HemK Methylase of polypeptide chain release factor	98.11
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.11
KOG4300	252	consensus Predicted methyltransferase [General fun	98.09
TIGR03438	301	probable methyltransferase. This model represents	98.09
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.08
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.08
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.05
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.05
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.04
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.04
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.03
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.0
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.98
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.96
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.96
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.96
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.93
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.93
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.93
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.91
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.9
PHA03412	241	putative methyltransferase; Provisional	97.87
KOG2904	328	consensus Predicted methyltransferase [General fun	97.86
KOG3010	261	consensus Methyltransferase [General function pred	97.84
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.81
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.8
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.8
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.75
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.75
PRK00536	262	speE spermidine synthase; Provisional	97.73
KOG1271	227	consensus Methyltransferases [General function pre	97.71
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.68
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.63
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.63
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.62
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.57
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.54
PHA03411	279	putative methyltransferase; Provisional	97.48
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.47
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.47
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.44
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	97.44
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.41
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.38
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.36
COG2521	287	Predicted archaeal methyltransferase [General func	97.35
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.31
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.31
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.21
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.2
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.19
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.08
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.08
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.08
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.05
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.01
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.98
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	96.98
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.96
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.95
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.84
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	96.81
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.78
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.73
PF13679	141	Methyltransf_32: Methyltransferase domain	96.69
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.68
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.68
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.6
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.56
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	96.54
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.41
COG4798	238	Predicted methyltransferase [General function pred	96.37
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.34
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.33
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.31
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.3
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.28
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.2
KOG2940	325	consensus Predicted methyltransferase [General fun	96.11
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.01
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.94
PRK04148	134	hypothetical protein; Provisional	95.91
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.87
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	95.87
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	95.84
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	95.77
KOG3201	201	consensus Uncharacterized conserved protein [Funct	95.68
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	95.48
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.27
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	95.26
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.24
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	95.19
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.09
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.81
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	94.81
COG3897	218	Predicted methyltransferase [General function pred	94.76
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	94.73
PHA01634	156	hypothetical protein	94.42
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	94.33
PLN02672	1082	methionine S-methyltransferase	94.08
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.08
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	94.07
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.04
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	93.81
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	93.75
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	93.64
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	93.54
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	93.41
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	93.23
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	93.05
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	92.73
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	92.65
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	92.65
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	92.54
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	92.07
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	91.86
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	91.82
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.54
COG4262	508	Predicted spermidine synthase with an N-terminal m	91.48
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	91.36
KOG1331	293	consensus Predicted methyltransferase [General fun	91.08
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.81
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	89.28
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	88.99
KOG3115	249	consensus Methyltransferase-like protein [General	88.72
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	86.97
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	86.8
COG2265	432	TrmA SAM-dependent methyltransferases related to t	86.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	86.15
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	86.14
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	86.09
COG2520	341	Predicted methyltransferase [General function pred	85.27
PF14314	675	Methyltrans_Mon: Virus-capping methyltransferase	84.48
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	84.38
PRK11524	284	putative methyltransferase; Provisional	83.69
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	83.42
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	83.21
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	82.95
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	82.63
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	82.3
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	82.12
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	81.95
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	81.35
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	81.31
KOG4058	199	consensus Uncharacterized conserved protein [Funct	81.27
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	81.18
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	81.03
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	80.58
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	80.41
PLN02668	386	indole-3-acetate carboxyl methyltransferase	80.28
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	80.12

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=2.2e-37  Score=228.56  Aligned_cols=136  Identities=45%  Similarity=0.834  Sum_probs=120.8

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++++|+||..+++..+|++||||||++||||+|||++++++++                                  
T Consensus        27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda  106 (205)
T PF01596_consen   27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA  106 (205)
T ss_dssp             GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred             CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence            5789999999999999999999999999999999999999997766                                  


Q ss_pred             ---------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292           47 ---------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  117 (143)
Q Consensus        47 ---------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~  117 (143)
                               ....++||+||+|+++.+|..+++.+.++|++||+|++||++|+|.+.++..+.+      ...++++|++
T Consensus       107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~------~~~~ir~f~~  180 (205)
T PF01596_consen  107 LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDP------KTVAIREFNE  180 (205)
T ss_dssp             HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSH------HHHHHHHHHH
T ss_pred             HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhh------hHHHHHHHHH
Confidence                     1124689999999999999999999999999999999999999999998843322      4556999999


Q ss_pred             HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          118 SLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       118 ~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      +|.++|+|+++++|+|||+++++||
T Consensus       181 ~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  181 YIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             HHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             HHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            9999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=1.3e-34  Score=218.90  Aligned_cols=142  Identities=54%  Similarity=0.978  Sum_probs=122.8

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++++|+||..+++..+|++||||||++||||+|||++++++++                                  
T Consensus        61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a  140 (247)
T PLN02589         61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA  140 (247)
T ss_pred             CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence            5689999999999999999999999999999999999999987665                                  


Q ss_pred             ----cC------CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHH
Q 032292           47 ----SE------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  116 (143)
Q Consensus        47 ----~~------~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~  116 (143)
                          +.      ..++||+||+|+++.+|..+++.++++|++||+|++||++|+|.+.++....++...+...+++++|+
T Consensus       141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn  220 (247)
T PLN02589        141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN  220 (247)
T ss_pred             HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHH
Confidence                11      13689999999999999999999999999999999999999999988753322221111233689999


Q ss_pred             HHhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          117 RSLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       117 ~~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      +.|.++|+|+++++|+|||+++++|+
T Consensus       221 ~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        221 KALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             HHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            99999999999999999999999987

>PLN02476 O-methyltransferase

Probab=100.00  E-value=1e-33  Score=216.72  Aligned_cols=136  Identities=46%  Similarity=0.798  Sum_probs=122.2

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++++|+||..+++..++++||||||++||||+|+|+.++++++                                  
T Consensus       100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            5789999999999999999999999999999999999999887654                                  


Q ss_pred             ----cC-----CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292           47 ----SE-----NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  117 (143)
Q Consensus        47 ----~~-----~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~  117 (143)
                          +.     ..++||+||+|+++.+|..+++.+.++|+|||+|++||++|+|.+.++....+      ...++++|++
T Consensus       180 ~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~------~t~~ir~fn~  253 (278)
T PLN02476        180 AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDA------KTISIRNFNK  253 (278)
T ss_pred             HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCH------HHHHHHHHHH
Confidence                11     13689999999999999999999999999999999999999999988753221      3468999999


Q ss_pred             HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          118 SLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       118 ~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      .+.++|+|+++++|+|||+++++|+
T Consensus       254 ~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        254 KLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             HHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            9999999999999999999999986

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=5e-33  Score=209.31  Aligned_cols=141  Identities=55%  Similarity=1.012  Sum_probs=125.6

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++++|+||..+++..++++|||||||+|+++++||++++++++                                  
T Consensus        50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda  129 (234)
T PLN02781         50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA  129 (234)
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence            5789999999999999999999999999999999999999876554                                  


Q ss_pred             ----c-----CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292           47 ----S-----ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  117 (143)
Q Consensus        47 ----~-----~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~  117 (143)
                          +     ...++||+||+|+++..|..+++.+.++|+|||+|++||++|+|.+.++....+++.++ ..+++++|++
T Consensus       130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~~  208 (234)
T PLN02781        130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFNK  208 (234)
T ss_pred             HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHHH
Confidence                0     01368999999999999999999999999999999999999999999886544444444 5678999999


Q ss_pred             HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          118 SLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       118 ~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      ++.++|+++++++|+|||+++++|+
T Consensus       209 ~i~~~~~~~~~~lp~gdG~~i~~k~  233 (234)
T PLN02781        209 LLASDPRVEISQISIGDGVTLCRRL  233 (234)
T ss_pred             HHhhCCCeEEEEEEeCCccEEEEEe
Confidence            9999999999999999999999986

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=2.9e-33  Score=207.41  Aligned_cols=135  Identities=41%  Similarity=0.691  Sum_probs=122.0

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------   46 (143)
                      .|++|+||..|++..++++||||||++||||+|||..++++++                                     
T Consensus        44 ~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~  123 (219)
T COG4122          44 DPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALD  123 (219)
T ss_pred             ChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHH
Confidence            4999999999999999999999999999999999999997665                                     


Q ss_pred             ---cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 032292           47 ---SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  123 (143)
Q Consensus        47 ---~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~  123 (143)
                         ....++||+||+|++|.+|+.+++.+.++|+|||++++||++++|.+..+..   +..++ ...+++.|++.+.++|
T Consensus       124 ~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~~~~~  199 (219)
T COG4122         124 VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYLLEDP  199 (219)
T ss_pred             HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHHhhCc
Confidence               1246899999999999999999999999999999999999999999888743   23333 5566999999999999


Q ss_pred             CeeEEEeecCCeeEEEEEc
Q 032292          124 RVQLSHVALGDGITICRRI  142 (143)
Q Consensus       124 ~~~~~~lp~~~Gl~~~~k~  142 (143)
                      +++++++|+|||+.+++|+
T Consensus       200 ~~~t~~lP~gDGl~v~~k~  218 (219)
T COG4122         200 RYDTVLLPLGDGLLLSRKR  218 (219)
T ss_pred             CceeEEEecCCceEEEeec
Confidence            9999999999999999986

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.7e-32  Score=199.93  Aligned_cols=137  Identities=58%  Similarity=0.983  Sum_probs=124.5

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |+++|++|+|++.++++.+|+++||||+.||||++.+|.++|++|+                                  
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a  134 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA  134 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence            7899999999999999999999999999999999999999999876                                  


Q ss_pred             ---------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHH---H
Q 032292           47 ---------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL---D  114 (143)
Q Consensus        47 ---------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~  114 (143)
                               ....+.|||+|+|++|.+|..+++++.+++|+||+|++||++|.|.+.+|+...+.+.+     .++   +
T Consensus       135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~-----~~r~~~~  209 (237)
T KOG1663|consen  135 LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGR-----SIREALN  209 (237)
T ss_pred             hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchh-----hhhhhhh
Confidence                     23468899999999999999999999999999999999999999988877665554433     356   9


Q ss_pred             HHHHhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          115 LNRSLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       115 f~~~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      ||..|..||+++.+++|+|+|+++|+|+
T Consensus       210 ~n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  210 LNKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             hhhHhccCcceeeEeeeccCceeeeccC
Confidence            9999999999999999999999999985

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.24  E-value=5.2e-11  Score=88.44  Aligned_cols=80  Identities=29%  Similarity=0.389  Sum_probs=60.5

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      ..|.....+...+...+..+|||||||+|+.|..+++..++.++                                    
T Consensus        60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~  139 (212)
T PRK13942         60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG  139 (212)
T ss_pred             CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence            45566666666667778899999999999999999988754332                                    


Q ss_pred             cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....++||.|++++...+.+   +.+.+.|+|||.+++.
T Consensus       140 ~~~~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        140 YEENAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCcCCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence            11246899999998765544   4567899999999874

>PLN03075 nicotianamine synthase; Provisional

Probab=99.21  E-value=8.4e-11  Score=91.16  Aligned_cols=83  Identities=17%  Similarity=0.160  Sum_probs=64.7

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEecc-ccHHHHHHHhhCCCCCc-----------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-----------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~-----------------------------------   46 (143)
                      +++.++++|..+... +|++|+||||| .|+++++++....++++                                   
T Consensus       108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da  186 (296)
T PLN03075        108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV  186 (296)
T ss_pred             HHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch
Confidence            456788888888776 89999999999 55777777765443333                                   


Q ss_pred             -c-C-CCCceeEEEEcC----CccchHHHHHHHHhcccCCeEEEEec
Q 032292           47 -S-E-NEGSFDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        47 -~-~-~~~~fD~v~~d~----~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                       . . ..++||+||+++    ++.++..+++.+.+.|+|||++++..
T Consensus       187 ~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        187 MDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             hhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence             1 1 236899999996    35688999999999999999998864

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.19  E-value=6.1e-10  Score=80.85  Aligned_cols=78  Identities=28%  Similarity=0.283  Sum_probs=60.0

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCcee
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFD   54 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD   54 (143)
                      .++...+...+..+|||+|||+|..++.+++..+. ++                                  ....++||
T Consensus        21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D   99 (187)
T PRK08287         21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKAD   99 (187)
T ss_pred             HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCC
Confidence            33334445567889999999999999999987653 22                                  01235799


Q ss_pred             EEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           55 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        55 ~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +|++++....+...++.+.+.|+|||++++..+
T Consensus       100 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        100 AIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             EEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence            999987666677889999999999999998654

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.19  E-value=2.1e-10  Score=77.08  Aligned_cols=77  Identities=22%  Similarity=0.270  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c----CCC
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S----ENE   50 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~----~~~   50 (143)
                      ...+.......+..+|||+|||+|..+..+++..+. ++                                 .    ...
T Consensus         8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (124)
T TIGR02469         8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSL   86 (124)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhc
Confidence            333444444455689999999999999999998764 22                                 0    123


Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++||.|+++.....+...++.+.+.|+|||.+++.
T Consensus        87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            57999999876667778899999999999999875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.18  E-value=5.6e-11  Score=78.85  Aligned_cols=66  Identities=23%  Similarity=0.304  Sum_probs=50.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC-
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA-   60 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~-   60 (143)
                      +..+|||||||+|..++++++..+. .+                                     ....++||+|++.. 
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPG-ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence            4689999999999999999995442 21                                     12346799999988 


Q ss_pred             Cccch------HHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNY------CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~------~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....+      ..+++.+.+.|+|||+++++
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            32222      34688999999999999986

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.16  E-value=1.9e-10  Score=85.40  Aligned_cols=78  Identities=32%  Similarity=0.387  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SE   48 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~   48 (143)
                      |.....+..++...+..+|||||||+|+.++.+++..+++++                                    ..
T Consensus        63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~  142 (215)
T TIGR00080        63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE  142 (215)
T ss_pred             HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence            444455555566778899999999999999999998765332                                    11


Q ss_pred             CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        49 ~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..++||+|++++....++   +.+.+.|+|||++++.
T Consensus       143 ~~~~fD~Ii~~~~~~~~~---~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       143 PLAPYDRIYVTAAGPKIP---EALIDQLKEGGILVMP  176 (215)
T ss_pred             ccCCCCEEEEcCCccccc---HHHHHhcCcCcEEEEE
Confidence            235799999987654443   4567899999999874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1e-10  Score=86.27  Aligned_cols=79  Identities=25%  Similarity=0.276  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC------------Cc---------------------cCCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED------------GQ---------------------SENE   50 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~------------~~---------------------~~~~   50 (143)
                      .|.....|..++...+..+|||||||+||.|+.||+....-            ++                     ....
T Consensus        57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~  136 (209)
T COG2518          57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE  136 (209)
T ss_pred             CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence            34444455555567788999999999999999999987520            00                     1235


Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .+||.|++.+.....+.   .+++.|++||++++-
T Consensus       137 aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P  168 (209)
T COG2518         137 APYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP  168 (209)
T ss_pred             CCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence            79999999988766554   457899999999873

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.15  E-value=2.8e-10  Score=85.88  Aligned_cols=79  Identities=20%  Similarity=0.226  Sum_probs=62.8

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCce
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSF   53 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~f   53 (143)
                      .+.......++.+|||+|||||-.|+.+++..+ .+.                                    |+.+++|
T Consensus        42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF  120 (238)
T COG2226          42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF  120 (238)
T ss_pred             HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence            333344444789999999999999999999987 333                                    6678999


Q ss_pred             eEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           54 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        54 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      |+|.+.-.   ..++..+++++.|+|||||.+++-+...
T Consensus       121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            99998753   4578899999999999999888765543

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.15  E-value=2.6e-10  Score=84.17  Aligned_cols=74  Identities=28%  Similarity=0.407  Sum_probs=53.8

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEG   51 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~   51 (143)
                      ..+..++...+..+|||||||+|+.+..+++.+++.++                                     ....+
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            33333444456689999999999999999988753332                                     01235


Q ss_pred             ceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +||.|++++....++   +.+.+.|+|||++++.
T Consensus       142 ~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        142 PFDAIIVTAAASTIP---SALVRQLKDGGVLVIP  172 (205)
T ss_pred             CccEEEEccCcchhh---HHHHHhcCcCcEEEEE
Confidence            899999998654443   5778999999999875

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.15  E-value=1.3e-10  Score=87.55  Aligned_cols=77  Identities=19%  Similarity=0.188  Sum_probs=53.1

Q ss_pred             HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCcee
Q 032292           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFD   54 (143)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD   54 (143)
                      +..+....++.+|||+|||||.++..+++..++.++                                    +..+++||
T Consensus        39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD  118 (233)
T PF01209_consen   39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFD  118 (233)
T ss_dssp             HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EE
T ss_pred             HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCcee
Confidence            334445567889999999999999999998765443                                    45678999


Q ss_pred             EEEEcCCc---cchHHHHHHHHhcccCCeEEEEecc
Q 032292           55 YAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        55 ~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .|++.-..   .+....++++.++|||||.+++-+.
T Consensus       119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~  154 (233)
T PF01209_consen  119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF  154 (233)
T ss_dssp             EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence            99987533   4677899999999999998876443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.13  E-value=3.7e-10  Score=82.52  Aligned_cols=66  Identities=23%  Similarity=0.276  Sum_probs=52.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      .++.+|||+|||+|..++.+++..+. ++                                   ....++||+|++++. 
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-  121 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-  121 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence            34789999999999999999986653 22                                   111568999999874 


Q ss_pred             cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++...++.+.++|+|||++++-
T Consensus       122 ~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        122 ASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             cCHHHHHHHHHHhcCCCeEEEEE
Confidence            56788899999999999999874

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.13  E-value=1.2e-10  Score=86.54  Aligned_cols=79  Identities=28%  Similarity=0.282  Sum_probs=54.7

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S   47 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~   47 (143)
                      .|..-..+..++.+.+..+|||||||+||.|..+|..+.+.++                                    .
T Consensus        57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~  136 (209)
T PF01135_consen   57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW  136 (209)
T ss_dssp             -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence            3444444445555788899999999999999999998776442                                    1


Q ss_pred             CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....+||.|++.+.....+.   .+.+.|++||++|+-
T Consensus       137 ~~~apfD~I~v~~a~~~ip~---~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  137 PEEAPFDRIIVTAAVPEIPE---ALLEQLKPGGRLVAP  171 (209)
T ss_dssp             GGG-SEEEEEESSBBSS--H---HHHHTEEEEEEEEEE
T ss_pred             ccCCCcCEEEEeeccchHHH---HHHHhcCCCcEEEEE
Confidence            23468999999987665443   467889999999973

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.12  E-value=2.2e-10  Score=84.74  Aligned_cols=69  Identities=23%  Similarity=0.270  Sum_probs=57.5

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCC---c--------------------------cCCCCceeEEEEcCC---ccc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDG---Q--------------------------SENEGSFDYAFVDAD---KDN   64 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~---~--------------------------~~~~~~fD~v~~d~~---~~~   64 (143)
                      ..++.+|.|+|||+|.+|..|+++.|..-   .                          ...+.++|++|.++.   ..+
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvlqWlpd  107 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVLQWLPD  107 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhhhhccc
Confidence            45789999999999999999999998521   1                          234568999999984   467


Q ss_pred             hHHHHHHHHhcccCCeEEEEe
Q 032292           65 YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +.+.|..+...|+|||+|.++
T Consensus       108 H~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106         108 HPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             cHHHHHHHHHhhCCCceEEEE
Confidence            788999999999999999986

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.10  E-value=9.6e-10  Score=81.99  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=55.8

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEE
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~   57 (143)
                      .+...+.++|||+|||+|..+..+++..++.+.                                    +...++||+|+
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  119 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVT  119 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEE
Confidence            334456789999999999999999988654332                                    22357899999


Q ss_pred             EcCC---ccchHHHHHHHHhcccCCeEEEEec
Q 032292           58 VDAD---KDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        58 ~d~~---~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +...   ..++...++++.+.|+|||.+++.+
T Consensus       120 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       120 IGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             EecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            8642   3467788999999999999998643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.09  E-value=4.1e-10  Score=81.81  Aligned_cols=66  Identities=30%  Similarity=0.376  Sum_probs=52.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEEEcCCc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAFVDADK   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~~d~~~   62 (143)
                      .++.+|||+|||+|+.++.++...+. ++                                  . ...++||+|++++ .
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~  118 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-L  118 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-h
Confidence            45899999999999999999876543 22                                  1 1246899999987 5


Q ss_pred             cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++...++.+.++|+|||++++.
T Consensus       119 ~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       119 ASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             hCHHHHHHHHHHhcCCCCEEEEE
Confidence            66788888999999999999863

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK04457 spermidine synthase; Provisional

Probab=99.09  E-value=3.6e-09  Score=81.03  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=56.9

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCC
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEG   51 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~   51 (143)
                      ++..+....++++|||||||+|.++.++++..+. .+                                      ....+
T Consensus        57 m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~  135 (262)
T PRK04457         57 MMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRH  135 (262)
T ss_pred             HHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCC
Confidence            4444444457899999999999999999988763 21                                      12246


Q ss_pred             ceeEEEEcCCccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292           52 SFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        52 ~fD~v~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +||+|++|+....       ..++++.+.+.|+|||++++.
T Consensus       136 ~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        136 STDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            8999999974322       257899999999999999984

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.08  E-value=1.2e-09  Score=80.17  Aligned_cols=72  Identities=24%  Similarity=0.341  Sum_probs=56.9

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEE
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~   57 (143)
                      ...+..+|||+|||+|..++.+++..++.++                                      +...++||.||
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~  116 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF  116 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence            3456789999999999999999887643222                                      11236799999


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           58 VDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +.+....+...++.+.++|+|||.++++..
T Consensus       117 ~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        117 IGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             ECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            987667788899999999999999998654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.07  E-value=2e-09  Score=78.11  Aligned_cols=72  Identities=26%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c--CCC-CceeEEEEc
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S--ENE-GSFDYAFVD   59 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~--~~~-~~fD~v~~d   59 (143)
                      +..+.++++|||||||..|+.+|...| .++                                 +  ..+ .+||.||+.
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIG  109 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIG  109 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEEC
Confidence            456788999999999999999995444 344                                 1  112 279999999


Q ss_pred             CCccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           60 ADKDNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        60 ~~~~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      +. .+....++.+...|+|||.||++-+..
T Consensus       110 Gg-~~i~~ile~~~~~l~~ggrlV~naitl  138 (187)
T COG2242         110 GG-GNIEEILEAAWERLKPGGRLVANAITL  138 (187)
T ss_pred             CC-CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence            98 788999999999999999999976543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.07  E-value=1.1e-09  Score=83.71  Aligned_cols=74  Identities=12%  Similarity=0.101  Sum_probs=55.8

Q ss_pred             HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cCCCCceeE
Q 032292           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SENEGSFDY   55 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~~~~~fD~   55 (143)
                      +...+..+|||+|||+|..+..+++..++.++                                       +..+++||+
T Consensus        69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~  148 (261)
T PLN02233         69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDA  148 (261)
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeE
Confidence            34456789999999999999999886542211                                       234578999


Q ss_pred             EEEcCC---ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           56 AFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        56 v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      |++...   ..+....++++.+.|||||.+++-+..
T Consensus       149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            998643   245678899999999999999876544

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.06  E-value=7.7e-10  Score=85.15  Aligned_cols=82  Identities=22%  Similarity=0.226  Sum_probs=64.7

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEE
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYA   56 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v   56 (143)
                      +.+...+.+.++.+|||||||.|..++++|+.......                                +...++||-|
T Consensus        62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrI  141 (283)
T COG2230          62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRI  141 (283)
T ss_pred             HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccccee
Confidence            44555556778999999999999999999999743111                                3446779999


Q ss_pred             EEcC-----CccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           57 FVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        57 ~~d~-----~~~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      ++-+     .+.+|..+|+.+.++|+|||.++.+.+...
T Consensus       142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence            9754     345799999999999999999999877643

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.05  E-value=1.9e-09  Score=79.63  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=85.2

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccH--HHHHHHhhCCC-CCc---------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTIPE-DGQ---------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~--~t~~la~~~~~-~~~---------------------------------   46 (143)
                      -+|...+||+.||+..+++.|+|+.|+-|.  +|+.||-+... .|+                                 
T Consensus        25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~  104 (218)
T PF07279_consen   25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE  104 (218)
T ss_pred             CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence            367889999999999999999999877543  56666655332 122                                 


Q ss_pred             -----cCCCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 032292           47 -----SENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  120 (143)
Q Consensus        47 -----~~~~~~fD~v~~d~~~~~~~-~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~  120 (143)
                           ...-...||+++|+...+|. ..|+. .++-+.|.+++..|.+..+.                  ..-.|...++
T Consensus       105 ~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~-~~~~~~GaVVV~~Na~~r~~------------------~~~~w~~~~~  165 (218)
T PF07279_consen  105 APEEVMPGLKGIDFVVVDCKREDFAARVLRA-AKLSPRGAVVVCYNAFSRST------------------NGFSWRSVLR  165 (218)
T ss_pred             CHHHHHhhccCCCEEEEeCCchhHHHHHHHH-hccCCCceEEEEeccccCCc------------------CCccHHHhcC
Confidence                 01124689999999988888 66664 44445677888888764321                  0123445566


Q ss_pred             cCCCeeEEEeecCCeeEEEE
Q 032292          121 DDPRVQLSHVALGDGITICR  140 (143)
Q Consensus       121 ~~~~~~~~~lp~~~Gl~~~~  140 (143)
                      ..+.+.+++||+|.||.+++
T Consensus       166 ~~r~Vrsv~LPIG~GleVt~  185 (218)
T PF07279_consen  166 GRRVVRSVFLPIGKGLEVTR  185 (218)
T ss_pred             CCCceeEEEeccCCCeEEEE
Confidence            67779999999999999987

The function of this family is unknown.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=8.2e-10  Score=83.40  Aligned_cols=81  Identities=21%  Similarity=0.283  Sum_probs=68.5

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +.|+...++...+.+.+..+|||.|+|+|..|..||.++.+.|+                                    
T Consensus        78 IyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~  157 (256)
T COG2519          78 IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE  157 (256)
T ss_pred             ecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence            45666777888888899999999999999999999998877665                                    


Q ss_pred             cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....+.||.||+|-  .+.+++++.+.+.|+|||.+++-
T Consensus       158 ~~~~~~vDav~LDm--p~PW~~le~~~~~Lkpgg~~~~y  194 (256)
T COG2519         158 GIDEEDVDAVFLDL--PDPWNVLEHVSDALKPGGVVVVY  194 (256)
T ss_pred             cccccccCEEEEcC--CChHHHHHHHHHHhCCCcEEEEE
Confidence            12345899999995  57799999999999999999874

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.02  E-value=7.5e-11  Score=78.08  Aligned_cols=64  Identities=31%  Similarity=0.606  Sum_probs=28.2

Q ss_pred             EEEeccccHHHHHHHhhCCCCC--c-------------------------------------cCC-CCceeEEEEcCCcc
Q 032292           24 IEIGVFTGYSLLLTALTIPEDG--Q-------------------------------------SEN-EGSFDYAFVDADKD   63 (143)
Q Consensus        24 LeiG~g~G~~t~~la~~~~~~~--~-------------------------------------~~~-~~~fD~v~~d~~~~   63 (143)
                      |||||..|++|+++++++++.+  +                                     +.. .++||++|+|+++.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~   80 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS   80 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence            7999999999999998876533  1                                     111 47999999999863


Q ss_pred             --chHHHHHHHHhcccCCeEEEEecc
Q 032292           64 --NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 --~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                        .....++.+.++|+|||+|++||+
T Consensus        81 ~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   81 YEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence              456688899999999999999984

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.01  E-value=8.5e-10  Score=70.40  Aligned_cols=59  Identities=24%  Similarity=0.255  Sum_probs=45.8

Q ss_pred             EEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCc---cchHH
Q 032292           24 IEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADK---DNYCN   67 (143)
Q Consensus        24 LeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~---~~~~~   67 (143)
                      ||+|||+|..+..+++. +. ..                                 +..+++||+|++....   .+...
T Consensus         1 LdiG~G~G~~~~~l~~~-~~-~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~   78 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GG-ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA   78 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TT-CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred             CEecCcCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHH
Confidence            89999999999999988 22 11                                 4567899999987632   46678


Q ss_pred             HHHHHHhcccCCeEEEE
Q 032292           68 YHERLMKLLKVGGIAVY   84 (143)
Q Consensus        68 ~~~~~~~~L~~gG~li~   84 (143)
                      +++++.++|||||++++
T Consensus        79 ~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   79 ALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHcCcCeEEeC
Confidence            89999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.00  E-value=7.4e-10  Score=85.32  Aligned_cols=81  Identities=22%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEEE
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYAF   57 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v~   57 (143)
                      .+...+.+.+..+|||||||.|..++++|+..+....                                .....+||.|+
T Consensus        53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~Iv  132 (273)
T PF02353_consen   53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIV  132 (273)
T ss_dssp             HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEE
T ss_pred             HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEE
Confidence            3444445678899999999999999999998542111                                23456999998


Q ss_pred             EcC-----CccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           58 VDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        58 ~d~-----~~~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      +-.     ...+|..+|+.+.++|+|||.++++.+...
T Consensus       133 Si~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~  170 (273)
T PF02353_consen  133 SIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR  170 (273)
T ss_dssp             EESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred             EEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence            753     235788999999999999999999877654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.98  E-value=2.4e-09  Score=84.25  Aligned_cols=72  Identities=15%  Similarity=0.153  Sum_probs=55.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      .++++|||||||+|+.+..++...+....                                   +. .++||+|++.+..
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl  199 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL  199 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence            35689999999999999999876432100                                   11 5789999986532


Q ss_pred             ---cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           63 ---DNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        63 ---~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                         .+....++++.+.|+|||.++++.....
T Consensus       200 ~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~  230 (322)
T PRK15068        200 YHRRSPLDHLKQLKDQLVPGGELVLETLVID  230 (322)
T ss_pred             hccCCHHHHHHHHHHhcCCCcEEEEEEEEec
Confidence               4567889999999999999999865443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.97  E-value=3.5e-09  Score=80.34  Aligned_cols=69  Identities=23%  Similarity=0.336  Sum_probs=54.2

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------cCCCCceeEEEEcCCc---
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------SENEGSFDYAFVDADK---   62 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------~~~~~~fD~v~~d~~~---   62 (143)
                      ...++.+|||||||+|..+..+++..+. ++                              ....++||+|++....   
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  106 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWL  106 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhC
Confidence            3456789999999999999999988753 11                              1124589999987642   


Q ss_pred             cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .+....++++.+.|+|||.+++.
T Consensus       107 ~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683        107 PDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEE
Confidence            35678899999999999999885

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.97  E-value=1.7e-09  Score=82.05  Aligned_cols=80  Identities=21%  Similarity=0.240  Sum_probs=61.0

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +-|....++...+.+.++.+|||.|+|+|..|.+|++.+.+.|+                                    
T Consensus        24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE  103 (247)
T ss_dssp             --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred             eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence            45677778888888999999999999999999999999887776                                    


Q ss_pred             c----CCCCceeEEEEcCCccchHHHHHHHHhcc-cCCeEEEE
Q 032292           47 S----ENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVY   84 (143)
Q Consensus        47 ~----~~~~~fD~v~~d~~~~~~~~~~~~~~~~L-~~gG~li~   84 (143)
                      .    ..+..+|.||+|-  .+.+.+++.+.+.| ++||+|++
T Consensus       104 ~g~~~~~~~~~DavfLDl--p~Pw~~i~~~~~~L~~~gG~i~~  144 (247)
T PF08704_consen  104 EGFDEELESDFDAVFLDL--PDPWEAIPHAKRALKKPGGRICC  144 (247)
T ss_dssp             G--STT-TTSEEEEEEES--SSGGGGHHHHHHHE-EEEEEEEE
T ss_pred             ccccccccCcccEEEEeC--CCHHHHHHHHHHHHhcCCceEEE
Confidence            0    1236799999996  45677889999999 89999976

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.97  E-value=2.8e-08  Score=75.47  Aligned_cols=82  Identities=17%  Similarity=0.198  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------cCCCCceeEEEE
Q 032292            7 HGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------SENEGSFDYAFV   58 (143)
Q Consensus         7 ~~~~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------~~~~~~fD~v~~   58 (143)
                      +...+..+... .++.+|||+|||+|+.++.+++.......                           ...+.+||+|++
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vva  185 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVA  185 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEE
Confidence            33444455443 46789999999999999987764322111                           011127999998


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +.....+...++.+.++|+|||++++..+.
T Consensus       186 ni~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        186 NILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             cCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            876555667888999999999999987654

>PRK08317 hypothetical protein; Provisional

Probab=98.97  E-value=8.9e-09  Score=76.24  Aligned_cols=83  Identities=20%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCc
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGS   52 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~   52 (143)
                      ...+.......++.+|||+|||+|..+..+++.+++.++                                   +...++
T Consensus         8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   87 (241)
T PRK08317          8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS   87 (241)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence            344445556667889999999999999999987632211                                   123468


Q ss_pred             eeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           53 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        53 fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      ||+|++...   ..+....++.+.+.|+|||.+++.+..+.
T Consensus        88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  128 (241)
T PRK08317         88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWD  128 (241)
T ss_pred             ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence            999998743   24567789999999999999988765544

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.96  E-value=3.2e-09  Score=80.65  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=53.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------cCCCCceeEEEEcCC---ccchH
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------SENEGSFDYAFVDAD---KDNYC   66 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------~~~~~~fD~v~~d~~---~~~~~   66 (143)
                      .++.+|||||||+|..+..+++..+. ++                            ....++||+|++...   ..+..
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d~~  106 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAALQWVPEHA  106 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhhhhCCCHH
Confidence            46789999999999999999988653 22                            123468999999763   24567


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 032292           67 NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        67 ~~~~~~~~~L~~gG~li~d   85 (143)
                      ..++++.+.|+|||.+++.
T Consensus       107 ~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103        107 DLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             HHHHHHHHhCCCCcEEEEE
Confidence            7899999999999999874

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.96  E-value=1.7e-08  Score=82.32  Aligned_cols=121  Identities=26%  Similarity=0.283  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S-   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~-   47 (143)
                      .....++..++...+..+|||+|||+|..|..+++.+.+.++                                    + 
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~  317 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE  317 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence            344556666666667789999999999999999988754333                                    1 


Q ss_pred             ---CCCCceeEEEEcCCc---------cc----------------hHHHHHHHHhcccCCeEEEEeccCCCccccCCCCC
Q 032292           48 ---ENEGSFDYAFVDADK---------DN----------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ   99 (143)
Q Consensus        48 ---~~~~~fD~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~   99 (143)
                         ...++||.|++|+.-         .+                ....++.+.++|||||.+++......     +++ 
T Consensus       318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-----~~E-  391 (434)
T PRK14901        318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-----PAE-  391 (434)
T ss_pred             ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----hhh-
Confidence               113579999998521         00                13457788899999999987643321     111 


Q ss_pred             CCCCcccchHHHHHHHHHHhhcCCCeeEE-----Eeec---CCeeEEEEEc
Q 032292          100 VPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRI  142 (143)
Q Consensus       100 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~-----~lp~---~~Gl~~~~k~  142 (143)
                              -...+..|+   ...|+|+..     ++|-   .||+.+|+-+
T Consensus       392 --------ne~~v~~~l---~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~  431 (434)
T PRK14901        392 --------NEAQIEQFL---ARHPDWKLEPPKQKIWPHRQDGDGFFMAVLR  431 (434)
T ss_pred             --------HHHHHHHHH---HhCCCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence                    112356665   345666533     3453   4999998743

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.96  E-value=2.8e-09  Score=74.53  Aligned_cols=81  Identities=30%  Similarity=0.339  Sum_probs=60.4

Q ss_pred             HHHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCC-CCc----------------------cCCCCceeEEEEcCCc-
Q 032292            8 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ----------------------SENEGSFDYAFVDADK-   62 (143)
Q Consensus         8 ~~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~----------------------~~~~~~fD~v~~d~~~-   62 (143)
                      .+++..+.. ..+..+|||||||+|..+..+++.... .+.                      ...+++||+|++.... 
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~   89 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVLE   89 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence            355666664 567899999999999999999765321 000                      1346899999987643 


Q ss_pred             --cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           63 --DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        63 --~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                        .+....++.+.++|+|||++++....
T Consensus        90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   90 HLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             GSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence              35677899999999999999987655

...

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.95  E-value=4e-09  Score=80.70  Aligned_cols=76  Identities=16%  Similarity=0.268  Sum_probs=57.6

Q ss_pred             HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEE
Q 032292           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~   58 (143)
                      +...+.++|||||||+|..++.+++...+.++                                    +..+++||+|++
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence            34557789999999999999888877654322                                    123468999998


Q ss_pred             cCC---ccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           59 DAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        59 d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      +..   ..+....++++.++|+|||.+++.++...
T Consensus       153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~  187 (272)
T PRK11873        153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR  187 (272)
T ss_pred             cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            763   23556789999999999999998776543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.95  E-value=3.4e-09  Score=78.36  Aligned_cols=80  Identities=28%  Similarity=0.312  Sum_probs=57.8

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC------C--------------Cc--------c-----CC
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------D--------------GQ--------S-----EN   49 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~------~--------------~~--------~-----~~   49 (143)
                      ..|.....+..++...+..+|||+|||+|+.+..+++....      +              +.        .     ..
T Consensus        62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  141 (212)
T PRK00312         62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA  141 (212)
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc
Confidence            45666666666667777899999999999999988876321      0              00        0     11


Q ss_pred             CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+|++++....+   .+.+.+.|+|||.+++.
T Consensus       142 ~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        142 YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            3689999999865544   34667999999999874

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.95  E-value=3.6e-09  Score=80.97  Aligned_cols=74  Identities=19%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCC---------------------c-----------cCCCCceeEEEEcC-C-
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------Q-----------SENEGSFDYAFVDA-D-   61 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~---------------------~-----------~~~~~~fD~v~~d~-~-   61 (143)
                      ...+..+|||||||+|..+..+++......                     .           +..+++||+|++.. - 
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~  128 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL  128 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence            455678999999999999999887542100                     0           23357899999842 1 


Q ss_pred             c---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           62 K---DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        62 ~---~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      +   .+....++++.++|+|||.+++.+...
T Consensus       129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        129 HLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            1   255678999999999999999876643

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.94  E-value=1.9e-08  Score=73.53  Aligned_cols=81  Identities=21%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~   47 (143)
                      ++...++...+...+..+|||+|||+|..++++++..+. ++                                     .
T Consensus        26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~  104 (196)
T PRK07402         26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA  104 (196)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence            344555566666667789999999999999999876543 22                                     0


Q ss_pred             CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .....+|.+++++. ......++.+.++|+|||.+++...
T Consensus       105 ~~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        105 QLAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             hCCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            11234678888754 3456789999999999999988643

>PLN02244 tocopherol O-methyltransferase

Probab=98.93  E-value=4.5e-09  Score=83.19  Aligned_cols=70  Identities=16%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      .++.+|||||||+|..+..+++.......                                   +..+++||+|++....
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            45689999999999999999987531100                                   2345789999985432


Q ss_pred             ---cchHHHHHHHHhcccCCeEEEEecc
Q 032292           63 ---DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        63 ---~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                         .+...+++++.++|+|||.+++.+.
T Consensus       197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        197 EHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             hccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence               3556789999999999999988543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.91  E-value=8.4e-09  Score=79.94  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCccc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKDN   64 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~~   64 (143)
                      .+.++|||+|||+|..++.+++.......                                 ....++||+|+++.....
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~  237 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV  237 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence            35689999999999999988764221100                                 112468999999876556


Q ss_pred             hHHHHHHHHhcccCCeEEEEeccC
Q 032292           65 YCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +...++.+.++|+|||.+++..+.
T Consensus       238 l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       238 IKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEeCc
Confidence            667888999999999999987654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.90  E-value=8.5e-09  Score=77.97  Aligned_cols=69  Identities=14%  Similarity=0.258  Sum_probs=51.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC----C------------C---c---------cCCCCceeEEEEcCC---ccchH
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE----D------------G---Q---------SENEGSFDYAFVDAD---KDNYC   66 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~----~------------~---~---------~~~~~~fD~v~~d~~---~~~~~   66 (143)
                      .++.+|||+|||+|..+..+++....    +            .   .         +..+++||+|++...   ..+..
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~  120 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLS  120 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHH
Confidence            35689999999999999888754211    0            0   0         234568999998753   24567


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 032292           67 NYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        67 ~~~~~~~~~L~~gG~li~d~   86 (143)
                      ..+.++.++|+|||++++..
T Consensus       121 ~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        121 TALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             HHHHHHHHHcCCCeEEEEEe
Confidence            78999999999999999864

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.90  E-value=3.1e-09  Score=78.30  Aligned_cols=81  Identities=20%  Similarity=0.183  Sum_probs=60.4

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +++.++.+...+..  +..+|||+|||+|..+..+++..+....                                    
T Consensus        26 ~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l  103 (202)
T PRK00121         26 LSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVL  103 (202)
T ss_pred             hcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHH
Confidence            45667777777776  6789999999999999999987653100                                    


Q ss_pred             c--CCCCceeEEEEcCCc---c--------chHHHHHHHHhcccCCeEEEEe
Q 032292           47 S--ENEGSFDYAFVDADK---D--------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ~--~~~~~fD~v~~d~~~---~--------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +  ...++||.|++....   .        .+...++.+.++|+|||++++.
T Consensus       104 ~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        104 LDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             HHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            1  235679999985311   0        1467899999999999999874

>PRK04266 fibrillarin; Provisional

Probab=98.89  E-value=9.5e-09  Score=77.17  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             HHHHHHH--HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cC------
Q 032292            8 GQLMAML--LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SE------   48 (143)
Q Consensus         8 ~~~l~~l--~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~------   48 (143)
                      ..++..+  +...+..+|||+|||+|+.+..+++.++ .++                               ..      
T Consensus        59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~  137 (226)
T PRK04266         59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAH  137 (226)
T ss_pred             HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhh
Confidence            3444434  4556778999999999999999999875 232                               00      


Q ss_pred             CCCceeEEEEcCCcc-chHHHHHHHHhcccCCeEEEEe
Q 032292           49 NEGSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        49 ~~~~fD~v~~d~~~~-~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..++||+||++.... .....++.+.+.|||||.+++.
T Consensus       138 l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        138 VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            135699999886532 2234578899999999999884

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.88  E-value=8.6e-09  Score=73.95  Aligned_cols=75  Identities=21%  Similarity=0.263  Sum_probs=53.1

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeE
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDY   55 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~   55 (143)
                      +|...+...+.++|||+|||+|..++.+++..+....                                  ....++||+
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~  101 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDL  101 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEE
T ss_pred             HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeE
Confidence            4444444447899999999999999999998775101                                  123578999


Q ss_pred             EEEcCCc----c----chHHHHHHHHhcccCCeEEEE
Q 032292           56 AFVDADK----D----NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        56 v~~d~~~----~----~~~~~~~~~~~~L~~gG~li~   84 (143)
                      |+++-..    .    .....++.+.++|+|||.+++
T Consensus       102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen  102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence            9997421    1    235678888899999998854

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.87  E-value=7e-09  Score=80.41  Aligned_cols=81  Identities=21%  Similarity=0.292  Sum_probs=61.8

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCce
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSF   53 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~f   53 (143)
                      ++...+.. ...++|||||||.||.+..|+.+-+....                                   +. .+.|
T Consensus       106 rl~p~l~~-L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~F  183 (315)
T PF08003_consen  106 RLLPHLPD-LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAF  183 (315)
T ss_pred             HHHhhhCC-cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCc
Confidence            34444443 36799999999999999999887543100                                   22 5789


Q ss_pred             eEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccCCCc
Q 032292           54 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGG   91 (143)
Q Consensus        54 D~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~~g   91 (143)
                      |.||+-+-   ..+....++++...|++||.+|++.....|
T Consensus       184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g  224 (315)
T PF08003_consen  184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG  224 (315)
T ss_pred             CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence            99999873   356778899999999999999998776654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.87  E-value=7.5e-09  Score=72.64  Aligned_cols=71  Identities=23%  Similarity=0.308  Sum_probs=53.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-C--CCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-E--NEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~--~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..+..+++...+.++                                  . .  ..++||+|++.+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence            35789999999999999999965443332                                  1 1  126899999986


Q ss_pred             Cc---cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           61 DK---DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        61 ~~---~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ..   .+....++.+.+.|++||++++.+..
T Consensus        82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            42   34557899999999999999886654

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.86  E-value=2.3e-08  Score=74.19  Aligned_cols=69  Identities=22%  Similarity=0.333  Sum_probs=53.1

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeEEEEcCCc---cc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDYAFVDADK---DN   64 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~v~~d~~~---~~   64 (143)
                      ++.+|||+|||+|..+..+++..+....                               +..+++||+|++....   .+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            4579999999999999999887653100                               2245789999987532   35


Q ss_pred             hHHHHHHHHhcccCCeEEEEecc
Q 032292           65 YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ....++.+.++|+|||.+++...
T Consensus       114 ~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       114 LSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEeC
Confidence            66789999999999999998643

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.86  E-value=1.3e-08  Score=75.55  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=50.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+..+|||||||+|.++..+++..++.+.                                 +...++||+|+++.... 
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~  129 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM  129 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCcc
Confidence            46679999999999999999988653222                                 02356799999986321 


Q ss_pred             ------ch-------HHHHHHHHhcccCCeEEEEe
Q 032292           64 ------NY-------CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ------~~-------~~~~~~~~~~L~~gG~li~d   85 (143)
                            +.       ...++.+.++|+|||.+++.
T Consensus       130 ~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        130 SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence                  11       34678888999999999984

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.85  E-value=7.7e-08  Score=78.66  Aligned_cols=84  Identities=23%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cC-
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SE-   48 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~-   48 (143)
                      ..+...++..++...+.++|||+|||+|..|+.+++.+++.++                                  .. 
T Consensus       235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~  314 (444)
T PRK14902        235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH  314 (444)
T ss_pred             EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence            3455566766776677789999999999999999988743332                                  00 


Q ss_pred             --CCCceeEEEEcCCcc------------------c-------hHHHHHHHHhcccCCeEEEEecc
Q 032292           49 --NEGSFDYAFVDADKD------------------N-------YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        49 --~~~~fD~v~~d~~~~------------------~-------~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                        ..++||+|++|+.-.                  +       ....++.+.++|+|||.+++...
T Consensus       315 ~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc  380 (444)
T PRK14902        315 EKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC  380 (444)
T ss_pred             chhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence              126799999986310                  0       12467788899999999987543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.85  E-value=7.8e-08  Score=78.33  Aligned_cols=81  Identities=25%  Similarity=0.284  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------c-----
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------S-----   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~-----   47 (143)
                      .....++..++...+..+|||+|||+|..|..+++..+. ++                                .     
T Consensus       230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~  308 (427)
T PRK10901        230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQW  308 (427)
T ss_pred             CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhh
Confidence            344455555666667889999999999999999988753 22                                0     


Q ss_pred             CCCCceeEEEEcCCcc---------------c----------hHHHHHHHHhcccCCeEEEEec
Q 032292           48 ENEGSFDYAFVDADKD---------------N----------YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~~---------------~----------~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...++||.|++|+.-.               .          ....++.+.++|+|||.+++..
T Consensus       309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            1135799999886311               0          1246778889999999998764

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.85  E-value=1.4e-08  Score=74.45  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             HHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCC
Q 032292           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ......++.+|||+|||+|..+.++|+.... .+.                              ....++||+|++...
T Consensus        24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~  103 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVV  103 (195)
T ss_pred             HHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecc
Confidence            3344556899999999999999999975321 000                              112357999987642


Q ss_pred             c-----cchHHHHHHHHhcccCCeEEEE
Q 032292           62 K-----DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        62 ~-----~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .     .....+++.+.++|+|||++++
T Consensus       104 ~~~~~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477       104 FMFLQAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            1     2345788999999999998544

Part of a tellurite-reducing operon tehA and tehB

>TIGR00452 methyltransferase, putative

Probab=98.84  E-value=1.2e-08  Score=80.10  Aligned_cols=73  Identities=15%  Similarity=0.201  Sum_probs=54.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC--Cc--------------------------------cCCCCceeEEEEcCC--
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED--GQ--------------------------------SENEGSFDYAFVDAD--   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~--~~--------------------------------~~~~~~fD~v~~d~~--   61 (143)
                      .+.++|||||||+|+.+..++......  |.                                .....+||+||+.+.  
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~  199 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY  199 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence            456899999999999999887664320  00                                012358999998763  


Q ss_pred             -ccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           62 -KDNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        62 -~~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                       ..+....++++.+.|+|||.+++......
T Consensus       200 H~~dp~~~L~el~r~LkpGG~Lvletl~i~  229 (314)
T TIGR00452       200 HRKSPLEHLKQLKHQLVIKGELVLETLVID  229 (314)
T ss_pred             ccCCHHHHHHHHHHhcCCCCEEEEEEEEec
Confidence             24566789999999999999998765443

Known examples to date are restricted to the proteobacteria.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.83  E-value=2.1e-08  Score=82.36  Aligned_cols=73  Identities=18%  Similarity=0.203  Sum_probs=55.4

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCC--
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDAD--   61 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~--   61 (143)
                      ..++.+|||||||+|..++.+++.......                                 +..+++||+|++...  
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~  343 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL  343 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence            456789999999999999999986532100                                 223568999998643  


Q ss_pred             -ccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           62 -KDNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        62 -~~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                       ..+....++++.+.|+|||.+++.+...
T Consensus       344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        344 HIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             ccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence             2456788999999999999999876543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.82  E-value=1.3e-07  Score=76.99  Aligned_cols=82  Identities=22%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c---
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S---   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~---   47 (143)
                      .....++..++...+..+|||+|||+|..|..+++.++ .++                                  .   
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~  302 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS  302 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence            34455666666666789999999999999999999876 333                                  0   


Q ss_pred             C--CCCceeEEEEcCCc---------cc----------------hHHHHHHHHhcccCCeEEEEecc
Q 032292           48 E--NEGSFDYAFVDADK---------DN----------------YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        48 ~--~~~~fD~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .  ..++||.|++|+.-         .+                ....++.+.++|+|||.+++...
T Consensus       303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            0  23569999998520         00                13467788899999999998644

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.7e-08  Score=78.34  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCC-CCce
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SEN-EGSF   53 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~-~~~f   53 (143)
                      -++|..+..  ++++|||+|||+|..++..++.-.....                                 ... .++|
T Consensus       153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~  230 (300)
T COG2264         153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPF  230 (300)
T ss_pred             HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcc
Confidence            345555544  7899999999999999987765332110                                 112 3699


Q ss_pred             eEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           54 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        54 D~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      |+|+.+.-..-.....+.+.++++|||+++++.++
T Consensus       231 DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         231 DVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             cEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence            99999874444556788889999999999998876

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.81  E-value=1.8e-08  Score=76.53  Aligned_cols=68  Identities=15%  Similarity=0.040  Sum_probs=50.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc----------------------------------cCCCCceeEEEEcCC-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ----------------------------------SENEGSFDYAFVDAD-   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~----------------------------------~~~~~~fD~v~~d~~-   61 (143)
                      .++.+|||+|||+|..+..+++.... .+.                                  +...++||+|++... 
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            35689999999999999999886321 000                                  123568999998753 


Q ss_pred             --ccchHHHHHHHHhcccCCeEEEEe
Q 032292           62 --KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 --~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                        ..+...+++++.++|+|||++++-
T Consensus       123 ~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        123 EWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             HhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence              235567899999999999999763

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.81  E-value=1.2e-07  Score=77.34  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S-   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~-   47 (143)
                      .....++..++...++.+|||+|||+|..|..+++.+++.+.                                    + 
T Consensus       223 d~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~  302 (431)
T PRK14903        223 GESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE  302 (431)
T ss_pred             CHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh
Confidence            345566666777777889999999999999999998754433                                    1 


Q ss_pred             CCCCceeEEEEcCCc---------c----------------chHHHHHHHHhcccCCeEEEEecc
Q 032292           48 ENEGSFDYAFVDADK---------D----------------NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~---------~----------------~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ...++||.|++|+.-         .                ...+.++.+.++|+|||++++...
T Consensus       303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  367 (431)
T PRK14903        303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC  367 (431)
T ss_pred             hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            124679999998521         0                013357788899999999988644

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.80  E-value=1.9e-08  Score=72.49  Aligned_cols=78  Identities=21%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeE
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDY   55 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~   55 (143)
                      ...+|.......++++|||+|||+|+.+..+++..+. ..                               ....++||+
T Consensus         7 d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~   85 (179)
T TIGR00537         7 DSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKC-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDV   85 (179)
T ss_pred             cHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccE
Confidence            3456656556667899999999999999999886541 11                               112468999


Q ss_pred             EEEcCCcc------------------------chHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~------------------------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |+++....                        .+..+++.+.++|+|||.+++-
T Consensus        86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~  139 (179)
T TIGR00537        86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI  139 (179)
T ss_pred             EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence            99874210                        0345688888999999998763

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.79  E-value=1.4e-08  Score=78.97  Aligned_cols=80  Identities=20%  Similarity=0.255  Sum_probs=55.7

Q ss_pred             HHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeEEE
Q 032292           10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDYAF   57 (143)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~v~   57 (143)
                      -|..|... .+.++|||+|||||..++..++.-.....                               ....++||+|+
T Consensus       151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvv  230 (295)
T PF06325_consen  151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVV  230 (295)
T ss_dssp             HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEE
T ss_pred             HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEE
Confidence            34444443 45689999999999999987664221100                               22358999999


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           58 VDADKDNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .+.-..-.....+.+.++|+|||+++++.++-
T Consensus       231 ANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  231 ANILADVLLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             EES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             ECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence            98766556677778889999999999988763

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.78  E-value=2.4e-08  Score=73.31  Aligned_cols=68  Identities=18%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------------cCCCCceeEEEEcCCc--
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------------SENEGSFDYAFVDADK--   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------------~~~~~~fD~v~~d~~~--   62 (143)
                      ..++.+|||+|||+|..+++||+.... .+.                               ....++||+|++....  
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF  107 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence            456789999999999999999986321 000                               1124679999976432  


Q ss_pred             ---cchHHHHHHHHhcccCCeEEEE
Q 032292           63 ---DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        63 ---~~~~~~~~~~~~~L~~gG~li~   84 (143)
                         .....+++.+.++|+|||++++
T Consensus       108 ~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        108 LEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence               1345788999999999998543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.78  E-value=3.8e-08  Score=79.20  Aligned_cols=74  Identities=22%  Similarity=0.206  Sum_probs=54.7

Q ss_pred             HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------cCCCCceeEEEEcCC-----
Q 032292           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------SENEGSFDYAFVDAD-----   61 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------~~~~~~fD~v~~d~~-----   61 (143)
                      +...++.+|||||||+|..+..+++..+....                            ....++||.|++...     
T Consensus       163 l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg  242 (383)
T PRK11705        163 LQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVG  242 (383)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCC
Confidence            34456789999999999999999987542110                            112468999986532     


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           62 KDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 ~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ..++..+++.+.++|+|||++++..+.
T Consensus       243 ~~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        243 PKNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             hHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            234678899999999999999987654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.77  E-value=4.9e-08  Score=76.85  Aligned_cols=69  Identities=26%  Similarity=0.355  Sum_probs=50.0

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEE
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~   57 (143)
                      .+...+..+|||||||+|+.++.+++..+..+.                                    ....++||+|+
T Consensus        75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii  154 (322)
T PRK13943         75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIF  154 (322)
T ss_pred             hcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEE
Confidence            334556789999999999999999987753221                                    11125799999


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           58 VDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++....+.+   +.+.+.|+|||.+++.
T Consensus       155 ~~~g~~~ip---~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        155 VTVGVDEVP---ETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ECCchHHhH---HHHHHhcCCCCEEEEE
Confidence            987544433   3567899999998774

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.76  E-value=3e-07  Score=75.26  Aligned_cols=81  Identities=22%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCC
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEG   51 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~   51 (143)
                      ...+...++...+.++|||+|||+|..|..+++.++..++                                   ....+
T Consensus       238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~  317 (445)
T PRK14904        238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEE  317 (445)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCC
Confidence            3444445555556789999999999999999987654333                                   01235


Q ss_pred             ceeEEEEcCCc---------c----------------chHHHHHHHHhcccCCeEEEEecc
Q 032292           52 SFDYAFVDADK---------D----------------NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        52 ~fD~v~~d~~~---------~----------------~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +||.|++|+.-         .                .....+..+.++|+|||++++...
T Consensus       318 ~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        318 QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            79999998420         0                012367788899999999998643

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.76  E-value=2.6e-08  Score=76.45  Aligned_cols=63  Identities=27%  Similarity=0.276  Sum_probs=47.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC-C-c-------------------------------cCCCCceeEEEEcCCccch
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED-G-Q-------------------------------SENEGSFDYAFVDADKDNY   65 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~-~-~-------------------------------~~~~~~fD~v~~d~~~~~~   65 (143)
                      +..+|||+|||+|+.+..+++.++.. + .                               +..+++||+|+.....   
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~---  161 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP---  161 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence            45789999999999999998876531 1 1                               3346789999975432   


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 032292           66 CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d   85 (143)
                       ..++++.+.|+|||++++-
T Consensus       162 -~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        162 -CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             -CCHHHHHhhccCCCEEEEE
Confidence             2356788999999999863

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.76  E-value=2.4e-08  Score=74.11  Aligned_cols=68  Identities=19%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             CEEEEEeccccHHHHHHHhhCCCCC---c--------------------------------cCCCCceeEEEEcC---Cc
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPEDG---Q--------------------------------SENEGSFDYAFVDA---DK   62 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~~~---~--------------------------------~~~~~~fD~v~~d~---~~   62 (143)
                      ++|||||||+|..+..+++..+...   .                                ....++||+|++..   ..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            4799999999999999998764210   0                                01245799999753   22


Q ss_pred             cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      .+...+++.+.++|+|||.+++.+..
T Consensus        81 ~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       81 KDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            45678999999999999999987764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.75  E-value=4.6e-08  Score=73.50  Aligned_cols=81  Identities=19%  Similarity=0.188  Sum_probs=59.0

Q ss_pred             HHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCC----CCc----------------------------cCCCCcee
Q 032292           10 LMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPE----DGQ----------------------------SENEGSFD   54 (143)
Q Consensus        10 ~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~----~~~----------------------------~~~~~~fD   54 (143)
                      ++...+..   ....+|||||||-|..+.+||+.-..    +..                            ....++||
T Consensus        47 ~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FD  126 (243)
T COG2227          47 YIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFD  126 (243)
T ss_pred             hhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCcc
Confidence            44444443   36789999999999999999986421    100                            12237999


Q ss_pred             EEEEcC---CccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           55 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        55 ~v~~d~---~~~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      +|.+--   +..+....+..+.+++||||++++..+.+.
T Consensus       127 vV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         127 VVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             EEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence            999864   335666788999999999999999877643

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.72  E-value=6.5e-08  Score=70.30  Aligned_cols=75  Identities=13%  Similarity=0.098  Sum_probs=52.9

Q ss_pred             HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------c-------------CCCCceeEEE
Q 032292           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------S-------------ENEGSFDYAF   57 (143)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------~-------------~~~~~fD~v~   57 (143)
                      ...+....+.++|||+|||+|..+..+++...+.++                    .             ...++||+|+
T Consensus        24 ~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~  103 (188)
T TIGR00438        24 NQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM  103 (188)
T ss_pred             HHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence            333444467889999999999999988877633211                    0             1235799999


Q ss_pred             EcCCc-------cc-------hHHHHHHHHhcccCCeEEEEe
Q 032292           58 VDADK-------DN-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~-------~~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +++..       .+       ....++.+.+.|+|||++++.
T Consensus       104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438       104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            97531       11       145788889999999999884

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.72  E-value=4.5e-08  Score=77.07  Aligned_cols=70  Identities=20%  Similarity=0.135  Sum_probs=51.6

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------cCCCCceeEEEEcCC---
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------SENEGSFDYAFVDAD---   61 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~~~~~~fD~v~~d~~---   61 (143)
                      +..+|||||||+|..+..+++.... .|.                                 +...++||+|++...   
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            4469999999999999999864211 000                                 122468999998652   


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           62 KDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 ~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ..+...+++.+.++|||||.+++..+.
T Consensus       211 v~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        211 VANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             cCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            346678899999999999999987543

>PRK00811 spermidine synthase; Provisional

Probab=98.72  E-value=2.5e-07  Score=71.62  Aligned_cols=68  Identities=28%  Similarity=0.290  Sum_probs=50.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDYA   56 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~v   56 (143)
                      .+|++||+||||+|..+.++++..+....                                         ....++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            47899999999999999998875321100                                         1225689999


Q ss_pred             EEcCCccc------h-HHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADKDN------Y-CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~~~------~-~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++|.....      | .++++.+.+.|+|||++++.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            99963221      1 45678899999999999874

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.70  E-value=6.4e-08  Score=74.89  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCCc---
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDADK---   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~~---   62 (143)
                      ..++++|||+|||+|..++++++.... .+.                              ...+++||+|++....   
T Consensus       118 ~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        118 TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence            346789999999999999999875211 000                              1135789999986531   


Q ss_pred             --cchHHHHHHHHhcccCCeEEEE
Q 032292           63 --DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        63 --~~~~~~~~~~~~~L~~gG~li~   84 (143)
                        .+....++.+.++|+|||++++
T Consensus       198 ~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        198 NRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEE
Confidence              2456788999999999998654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.69  E-value=1.7e-07  Score=68.91  Aligned_cols=71  Identities=20%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCC-
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDAD-   61 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~-   61 (143)
                      ..++.+|||+|||+|..+..+++..+..++                                  +...++||+|++... 
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~  116 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL  116 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence            346789999999999999999988763111                                  123467999987542 


Q ss_pred             --ccchHHHHHHHHhcccCCeEEEEecc
Q 032292           62 --KDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        62 --~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                        ..+....++.+.+.|+|||.+++.+.
T Consensus       117 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       117 RNVTDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             CCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence              34567789999999999999987543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.69  E-value=1.1e-07  Score=74.14  Aligned_cols=77  Identities=16%  Similarity=0.050  Sum_probs=55.1

Q ss_pred             HHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------c---CCCCceeEEEE
Q 032292           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------S---ENEGSFDYAFV   58 (143)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~---~~~~~fD~v~~   58 (143)
                      ..+...+..+|||||||+|..++.+++..|. .+                               .   .....+|+|++
T Consensus       143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~  221 (306)
T TIGR02716       143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLF  221 (306)
T ss_pred             HHcCCCCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEe
Confidence            3334456789999999999999999999874 21                               1   11234798876


Q ss_pred             cCCcc-----chHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           59 DADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        59 d~~~~-----~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      .....     .....++++.+.|+|||.+++.+..+.
T Consensus       222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~  258 (306)
T TIGR02716       222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  258 (306)
T ss_pred             EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            54221     124578999999999999988776653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.68  E-value=2.2e-07  Score=68.97  Aligned_cols=70  Identities=19%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..+..+++..+...+                                     +...++||+|++..
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~  129 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF  129 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence            35689999999999999999888752111                                     11246799998764


Q ss_pred             C---ccchHHHHHHHHhcccCCeEEEEecc
Q 032292           61 D---KDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        61 ~---~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .   ..+....++.+.++|+|||.+++-+.
T Consensus       130 ~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        130 GLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             ccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            2   24567789999999999999876543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.68  E-value=1.1e-08  Score=66.58  Aligned_cols=59  Identities=25%  Similarity=0.359  Sum_probs=36.3

Q ss_pred             EEEeccccHHHHHHHhhCCCC--------------Cc-----------------------cCCCCceeEEEEcCCc---c
Q 032292           24 IEIGVFTGYSLLLTALTIPED--------------GQ-----------------------SENEGSFDYAFVDADK---D   63 (143)
Q Consensus        24 LeiG~g~G~~t~~la~~~~~~--------------~~-----------------------~~~~~~fD~v~~d~~~---~   63 (143)
                      ||||||+|..+..+++..+..              ++                       ....++||+|++....   .
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            799999999999999886420              00                       0112599999987532   3


Q ss_pred             chHHHHHHHHhcccCCeEE
Q 032292           64 NYCNYHERLMKLLKVGGIA   82 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~l   82 (143)
                      +....++.+.++|+|||+|
T Consensus        81 ~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -HHHHHHHHTTT-TSS-EE
T ss_pred             hHHHHHHHHHHHcCCCCCC
Confidence            5567889999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00740 methyltransferase, putative

Probab=98.68  E-value=2e-07  Score=70.14  Aligned_cols=71  Identities=10%  Similarity=0.139  Sum_probs=50.7

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCC-CCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIP-EDGQ-----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~-~~~~-----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      +..+|||+|||+|..+..+++.+. +.++                                   .....++|+|++....
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l  132 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  132 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence            567999999999999999988753 1222                                   0122457888765421


Q ss_pred             -----cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           63 -----DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        63 -----~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                           .+....++++.+.|+|||.+++.+...
T Consensus       133 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       133 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence                 123568899999999999999876543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00417 speE spermidine synthase

Probab=98.67  E-value=3.5e-07  Score=70.24  Aligned_cols=68  Identities=26%  Similarity=0.259  Sum_probs=49.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v~   57 (143)
                      .+|++||+||||+|..+..+++..+....                                        ....++||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            46889999999999999888765421000                                        01146899999


Q ss_pred             EcCCcc-----c--hHHHHHHHHhcccCCeEEEEe
Q 032292           58 VDADKD-----N--YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~~-----~--~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +|....     .  ..++++.+.+.|+|||++++.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            987421     1  246788999999999999875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.67  E-value=1.2e-07  Score=75.20  Aligned_cols=75  Identities=20%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCcee
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFD   54 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD   54 (143)
                      ..++..+.. ....+|||+|||+|..++.+++..+. .+                                 ....++||
T Consensus       186 ~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fD  263 (342)
T PRK09489        186 QLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFD  263 (342)
T ss_pred             HHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCcc
Confidence            344444432 34568999999999999999988663 11                                 12357899


Q ss_pred             EEEEcCCc--------cchHHHHHHHHhcccCCeEEEE
Q 032292           55 YAFVDADK--------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        55 ~v~~d~~~--------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      +|+++-..        ......++.+.++|+|||.+++
T Consensus       264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            99997422        1235678888999999998854

>PTZ00146 fibrillarin; Provisional

Probab=98.66  E-value=1e-07  Score=73.86  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=51.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c----CCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S----ENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~----~~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|+++..+|+.+.+.++                                 +    ...++||+||+|.
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv  210 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADV  210 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence            45679999999999999999999864332                                 1    0235799999998


Q ss_pred             CccchH-HHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYC-NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~-~~~~~~~~~L~~gG~li~d   85 (143)
                      ...+.. ..+..+.++|||||.+++.
T Consensus       211 a~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        211 AQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCcchHHHHHHHHHHhccCCCEEEEE
Confidence            654433 3455778999999999883

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.66  E-value=1.6e-07  Score=71.91  Aligned_cols=79  Identities=16%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCC
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEG   51 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~   51 (143)
                      ..+...++...+..+|||+|||+|..|..+++.+.+.+.                                    +...+
T Consensus        60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~  139 (264)
T TIGR00446        60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVP  139 (264)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhcc
Confidence            344444555567789999999999999999998764333                                    11235


Q ss_pred             ceeEEEEcCCcc-------------------------chHHHHHHHHhcccCCeEEEEec
Q 032292           52 SFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        52 ~fD~v~~d~~~~-------------------------~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +||.|++|+.-.                         ...+.++.+.++|+|||+|++..
T Consensus       140 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       140 KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            699999985210                         01246777889999999998763

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.66  E-value=1.4e-07  Score=75.68  Aligned_cols=65  Identities=12%  Similarity=0.099  Sum_probs=47.9

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEcCC
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ..+|||+|||+|..++.+++..|. .+                                      ....++||+|+++-.
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPP  307 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP  307 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcC
Confidence            469999999999999999988764 21                                      011347999999742


Q ss_pred             cc--------chHHHHHHHHhcccCCeEEEEe
Q 032292           62 KD--------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ~~--------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..        .....+..+.++|+|||.+.+-
T Consensus       308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        308 FHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             cccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            11        1235678888999999988763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.65  E-value=1.8e-07  Score=76.95  Aligned_cols=72  Identities=25%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+.++|||||||+|..+..+++.... .+.                                +...++||+|++..... 
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~  115 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY  115 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence            35679999999999999999986431 000                                12346899999875321 


Q ss_pred             ----chHHHHHHHHhcccCCeEEEEeccCC
Q 032292           64 ----NYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        64 ----~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                          .....++++.++|+|||++++.+..+
T Consensus       116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~  145 (475)
T PLN02336        116 LSDKEVENLAERMVKWLKVGGYIFFRESCF  145 (475)
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence                23567889999999999999876554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.64  E-value=1.6e-07  Score=71.09  Aligned_cols=71  Identities=11%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCC-CCCc-----------------------------------cCCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQ-----------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~-~~~~-----------------------------------~~~~~~fD~v~~d~~   61 (143)
                      .+..+|||+|||+|..+..+++.+. +.++                                   ....+++|+|++...
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            3568999999999999999987542 2222                                   011245888886532


Q ss_pred             c-----cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           62 K-----DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 ~-----~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      .     ......++++.+.|+|||.+++.+..
T Consensus       135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            1     12346789999999999999886643

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.64  E-value=1.5e-07  Score=72.88  Aligned_cols=80  Identities=14%  Similarity=0.158  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHh----hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            5 TIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         5 ~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      +++..++...+.    ..++.+|||+|||+|..++.+++..+. .+                                  
T Consensus       103 ~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~  181 (284)
T TIGR03533       103 SPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL  181 (284)
T ss_pred             CchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence            345555554433    134679999999999999999987653 11                                  


Q ss_pred             --cCCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           47 --SENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 --~~~~~~fD~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                        ....++||+|+++-.-                            ..|...++.+.++|+|||+++++
T Consensus       182 ~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       182 FAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             hhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              1123479999986210                            11345577778999999999875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.63  E-value=2e-07  Score=68.24  Aligned_cols=67  Identities=22%  Similarity=0.317  Sum_probs=50.1

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c---CCCCceeEEEEcC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S---ENEGSFDYAFVDA   60 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~---~~~~~fD~v~~d~   60 (143)
                      +..++||||||+|..+..+|+..+....                                   .   ...+++|.|+++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            5679999999999999999998764211                                   1   2245899999874


Q ss_pred             Ccc-----------chHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKD-----------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~-----------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...           .....++.+.++|+|||.+++.
T Consensus        96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            211           1246789999999999999763

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02366 spermidine synthase

Probab=98.63  E-value=4.3e-07  Score=71.14  Aligned_cols=68  Identities=24%  Similarity=0.291  Sum_probs=50.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cC-CCCceeEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SE-NEGSFDYA   56 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~-~~~~fD~v   56 (143)
                      .+|++||+||||.|..+.++++.-+....                                        .. ..++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            57899999999999999999876321100                                        11 14579999


Q ss_pred             EEcCCccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADKDN-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++|+....       ..++++.+.+.|+|||+++..
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            99975421       245788999999999999764

>PRK06922 hypothetical protein; Provisional

Probab=98.62  E-value=1.8e-07  Score=79.19  Aligned_cols=75  Identities=15%  Similarity=0.178  Sum_probs=54.6

Q ss_pred             HHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c--CCCCcee
Q 032292           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S--ENEGSFD   54 (143)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~--~~~~~fD   54 (143)
                      ..+....++.+|||+|||+|..+..+++..+. +.                                   +  ..+++||
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFD  489 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVD  489 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEE
Confidence            34455567899999999999999888876652 11                                   1  2357899


Q ss_pred             EEEEcCCc----------------cchHHHHHHHHhcccCCeEEEEecc
Q 032292           55 YAFVDADK----------------DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        55 ~v~~d~~~----------------~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +|++....                .+....++.+.+.|+|||.+++.+.
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            99875311                2345678899999999999988654

>PRK01581 speE spermidine synthase; Validated

Probab=98.61  E-value=1.7e-07  Score=74.75  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------------cCCCC
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------------SENEG   51 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------------~~~~~   51 (143)
                      ...+|++||+||||+|+.+..+++..+. .+                                            ....+
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~  225 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKYETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS  225 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence            3468999999999999988888765321 11                                            22356


Q ss_pred             ceeEEEEcCCcc-------ch-HHHHHHHHhcccCCeEEEEe
Q 032292           52 SFDYAFVDADKD-------NY-CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        52 ~fD~v~~d~~~~-------~~-~~~~~~~~~~L~~gG~li~d   85 (143)
                      +||+|++|....       -| .++++.+.+.|+|||++++.
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            899999996422       12 45788999999999999875

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.60  E-value=2.7e-07  Score=73.18  Aligned_cols=66  Identities=17%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCc---
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADK---   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~---   62 (143)
                      +..+|||||||+|..+..+++..+. ..                                 +...++||+|++....   
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence            4579999999999999998887642 11                                 1235689999986532   


Q ss_pred             cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .+....++++.+.|+|||.+++-
T Consensus       192 ~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        192 PDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEEE
Confidence            34567899999999999998763

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.60  E-value=3.5e-07  Score=67.62  Aligned_cols=72  Identities=17%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------cCCCCceeEEEEcCCcc
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      +....++.+|||+|||+|+.+..+++..+. ..                              +..+++||+|++.+...
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~  116 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLI  116 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhh
Confidence            334456789999999999999999887542 11                              23466899999876421


Q ss_pred             -----chHHHHHHHHhcccCCeEEEEeccC
Q 032292           64 -----NYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        64 -----~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                           .....++++.+.+  ++++++.+..
T Consensus       117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~  144 (204)
T TIGR03587       117 HINPDNLPTAYRELYRCS--NRYILIAEYY  144 (204)
T ss_pred             hCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence                 2345677777776  4567666554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=2.7e-07  Score=71.58  Aligned_cols=75  Identities=21%  Similarity=0.206  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCc
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGS   52 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~   52 (143)
                      +--++..+..... .+|||+|||.|+.++.+|+..|. .+                                  ....++
T Consensus       147 S~lLl~~l~~~~~-~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k  224 (300)
T COG2813         147 SRLLLETLPPDLG-GKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK  224 (300)
T ss_pred             HHHHHHhCCccCC-CcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence            3345555554434 49999999999999999999883 22                                  122458


Q ss_pred             eeEEEEcCCcc----ch----HHHHHHHHhcccCCeEEE
Q 032292           53 FDYAFVDADKD----NY----CNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        53 fD~v~~d~~~~----~~----~~~~~~~~~~L~~gG~li   83 (143)
                      ||+|+++-..+    -.    .+.+..+.++|++||-|-
T Consensus       225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~  263 (300)
T COG2813         225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW  263 (300)
T ss_pred             ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence            99999875321    12    257788889999999774

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.57  E-value=6e-07  Score=67.41  Aligned_cols=80  Identities=21%  Similarity=0.280  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhhc--CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCC
Q 032292            6 IHGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SEN   49 (143)
Q Consensus         6 ~~~~~l~~l~~~~--~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~   49 (143)
                      ++-.++..+....  ++.+|||+|||+|..+..+++..+....                                  ...
T Consensus        72 ~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~  151 (251)
T TIGR03534        72 DTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP  151 (251)
T ss_pred             ChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc
Confidence            3344544444432  4569999999999999999988653100                                  122


Q ss_pred             CCceeEEEEcCCc-----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+|+++..-                             ..|...++.+.++|+|||.+++.
T Consensus       152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            5789999985310                             01235677888999999999885

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.55  E-value=3.6e-07  Score=67.00  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCcee
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFD   54 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD   54 (143)
                      ..-+++.. +...++.++||+|||.|..+++||+.--+ .+.                              ...++.||
T Consensus        18 ~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD   96 (192)
T PF03848_consen   18 THSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD   96 (192)
T ss_dssp             --HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred             CcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence            33344433 45567899999999999999999987321 000                              12357899


Q ss_pred             EEEEcC-----CccchHHHHHHHHhcccCCeEEEEe
Q 032292           55 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        55 ~v~~d~-----~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +|++..     .....+..++.+...++|||++++.
T Consensus        97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen   97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            998743     2234456788889999999998874

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK05785 hypothetical protein; Provisional

Probab=98.54  E-value=7.7e-07  Score=66.72  Aligned_cols=71  Identities=14%  Similarity=0.105  Sum_probs=50.9

Q ss_pred             HHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCC--Cc------------------------cCCCCceeEEEEcCC-
Q 032292           10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPED--GQ------------------------SENEGSFDYAFVDAD-   61 (143)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~--~~------------------------~~~~~~fD~v~~d~~-   61 (143)
                      ++..+... .++.+|||+|||||..+..+++.....  |.                        +..+++||+|++... 
T Consensus        41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l  120 (226)
T PRK05785         41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFAL  120 (226)
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChh
Confidence            34444332 357899999999999999998874210  00                        455789999998653 


Q ss_pred             --ccchHHHHHHHHhcccCCe
Q 032292           62 --KDNYCNYHERLMKLLKVGG   80 (143)
Q Consensus        62 --~~~~~~~~~~~~~~L~~gG   80 (143)
                        ..+....++++.++|||..
T Consensus       121 ~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        121 HASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             hccCCHHHHHHHHHHHhcCce
Confidence              2456778999999999954

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.51  E-value=6e-07  Score=68.10  Aligned_cols=77  Identities=21%  Similarity=0.242  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------c
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------S   47 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~   47 (143)
                      .+-+|...+.....++|||+|||+|..++.+|++.++ ++                                       .
T Consensus        32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            4567888888878999999999999999999998664 22                                       2


Q ss_pred             CCCCceeEEEEcCC-----c----------------cchHHHHHHHHhcccCCeEEEE
Q 032292           48 ENEGSFDYAFVDAD-----K----------------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        48 ~~~~~fD~v~~d~~-----~----------------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ....+||+|+++-.     .                .+..++++.+..+||+||.+.+
T Consensus       111 ~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         111 LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            23457999998631     0                1233467777899999999976

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=7.4e-07  Score=65.87  Aligned_cols=76  Identities=21%  Similarity=0.289  Sum_probs=55.3

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------
Q 032292            7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------   46 (143)
Q Consensus         7 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------   46 (143)
                      ....+..|-. +.+..+.||+|+|+||.|.+++..+...+.                                       
T Consensus        69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i  148 (237)
T KOG1661|consen   69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI  148 (237)
T ss_pred             HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence            3445555543 557789999999999999999977654322                                       


Q ss_pred             --------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 --------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 --------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                              .....+||.|++.+.....+   +.+...|++||.+++-
T Consensus       149 vvGDgr~g~~e~a~YDaIhvGAaa~~~p---q~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  149 VVGDGRKGYAEQAPYDAIHVGAAASELP---QELLDQLKPGGRLLIP  192 (237)
T ss_pred             EeCCccccCCccCCcceEEEccCccccH---HHHHHhhccCCeEEEe
Confidence                    23467899999987655433   4677899999998763

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.49  E-value=6e-07  Score=59.80  Aligned_cols=65  Identities=23%  Similarity=0.358  Sum_probs=47.2

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCCc
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      +.+|||+|||+|..++.+++.......                                     ....++||+|+.+...
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            358999999999999999988721100                                     2457899999997522


Q ss_pred             c-----------chHHHHHHHHhcccCCeEEEE
Q 032292           63 D-----------NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        63 ~-----------~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .           .+...++.+.++|+|||++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            1           245678999999999999976

...

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.49  E-value=6.8e-07  Score=66.72  Aligned_cols=82  Identities=17%  Similarity=0.207  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC------C--------------Cc------------c-CCCC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------D--------------GQ------------S-ENEG   51 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~------~--------------~~------------~-~~~~   51 (143)
                      +...+++.......+..+|||||||+|..+..+++....      +              +.            + ...+
T Consensus        34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (233)
T PRK05134         34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPG  113 (233)
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCC
Confidence            334455555555556789999999999999888765211      0              00            1 1347


Q ss_pred             ceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEec
Q 032292           52 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        52 ~fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +||+|++...   ..+....++.+.+.|+|||.+++..
T Consensus       114 ~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        114 QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            8999988532   2355677899999999999998864

>PRK14968 putative methyltransferase; Provisional

Probab=98.49  E-value=1.2e-06  Score=62.89  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCce
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSF   53 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~f   53 (143)
                      .++.......+.++|||+|||+|+.+..+++. .....                                   ...+++|
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   91 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKF   91 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCc
Confidence            34444444467789999999999999999876 21100                                   0112379


Q ss_pred             eEEEEcCCc------------------------cchHHHHHHHHhcccCCeEEEE
Q 032292           54 DYAFVDADK------------------------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        54 D~v~~d~~~------------------------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      |+|+.+...                        ..+...++.+.++|+|||.+++
T Consensus        92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~  146 (188)
T PRK14968         92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL  146 (188)
T ss_pred             eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence            999876321                        0124468888899999998876

>PRK14967 putative methyltransferase; Provisional

Probab=98.49  E-value=1e-06  Score=65.74  Aligned_cols=67  Identities=12%  Similarity=0.064  Sum_probs=46.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEEEEcCCcc--
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYAFVDADKD--   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v~~d~~~~--   63 (143)
                      .+..+|||+|||+|..++.+++.......                                ....++||+|+++....  
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVPA  114 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCCC
Confidence            34579999999999999998875221110                                12346899999973100  


Q ss_pred             ----------------------chHHHHHHHHhcccCCeEEEE
Q 032292           64 ----------------------NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        64 ----------------------~~~~~~~~~~~~L~~gG~li~   84 (143)
                                            .+...++.+.++|++||.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence                                  023467778899999999986

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.48  E-value=7e-07  Score=69.91  Aligned_cols=64  Identities=13%  Similarity=0.199  Sum_probs=47.3

Q ss_pred             CEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcCCc--
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDADK--   62 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~~~--   62 (143)
                      .+|||+|||+|..++.+++..+. .+                                    ....++||+|+++-.-  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence            79999999999999999988653 11                                    1123479999986200  


Q ss_pred             --------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 --------------------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 --------------------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                                                ..|...++.+.++|+|||.++++
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                                      11345677888999999999885

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.48  E-value=3.1e-07  Score=67.34  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC----CCc--------------------------cCCCCceeEEEEcCCc------
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE----DGQ--------------------------SENEGSFDYAFVDADK------   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~----~~~--------------------------~~~~~~fD~v~~d~~~------   62 (143)
                      .-.++||+|||.|..|..||.....    +..                          ..+.++||+|++..-.      
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~  122 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDDA  122 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSSSH
T ss_pred             ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCCCH
Confidence            3479999999999999999988532    000                          2357899999987521      


Q ss_pred             cchHHHHHHHHhcccCCeEEEEeccCC--CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEeecCCeeEEEE
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYDNTLW--GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR  140 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~lp~~~Gl~~~~  140 (143)
                      .+...+++.+...|+|||.+|+-..--  .-.+..+.        . ...-.+-|++++.+-+.+++.--..+..-.+++
T Consensus       123 ~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~--------g-a~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (201)
T PF05401_consen  123 EDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAA--------G-AETVLEMLQEHLTEVERVECRGGSPNEDCLLAR  193 (201)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S-----------HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCccc--------c-hHHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence            223446788889999999998743210  00111111        0 233456677777655555554333334344443

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.46  E-value=7.9e-07  Score=68.73  Aligned_cols=79  Identities=18%  Similarity=0.175  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhh---cCC-CEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------
Q 032292            6 IHGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------   46 (143)
Q Consensus         6 ~~~~~l~~l~~~---~~~-~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------   46 (143)
                      ++..++......   .++ .+|||+|||+|..++.++...+. .+                                   
T Consensus        97 ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~  175 (284)
T TIGR00536        97 ETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF  175 (284)
T ss_pred             ccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh
Confidence            444455544322   233 69999999999999999988753 11                                   


Q ss_pred             -cCCCCceeEEEEcCC---------------c-------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           47 -SENEGSFDYAFVDAD---------------K-------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 -~~~~~~fD~v~~d~~---------------~-------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                       .....+||+|+++-.               +             ..|...++.+.++|+|||++++.
T Consensus       176 ~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e  243 (284)
T TIGR00536       176 EPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE  243 (284)
T ss_pred             ccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence             111237999998620               0             02445677888999999999875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.45  E-value=2.3e-06  Score=63.22  Aligned_cols=87  Identities=20%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhhc-CCC-EEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-
Q 032292            7 HGQLMAMLLRLV-NAK-KTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S-   47 (143)
Q Consensus         7 ~~~~l~~l~~~~-~~~-~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~-   47 (143)
                      ..-++..|.+.. ... +|||||||||--+.++|+.+|. -.                                    + 
T Consensus        11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP   89 (204)
T ss_pred             HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC
Confidence            344555555543 334 5999999999999999999984 11                                    1 


Q ss_pred             --------CCCCceeEEEEcC-Cc----cchHHHHHHHHhcccCCeEEEEeccCC-Ccccc
Q 032292           48 --------ENEGSFDYAFVDA-DK----DNYCNYHERLMKLLKVGGIAVYDNTLW-GGTVA   94 (143)
Q Consensus        48 --------~~~~~fD~v~~d~-~~----~~~~~~~~~~~~~L~~gG~li~d~~~~-~g~~~   94 (143)
                              ...++||.||+-- -|    ......|+.+.++|++||.+++-..+. .|...
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t  150 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT  150 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC
Confidence                    1245899999642 11    223457888889999999998876554 34443

The function of this family is unknown.

>PRK06202 hypothetical protein; Provisional

Probab=98.44  E-value=7.2e-07  Score=66.77  Aligned_cols=69  Identities=10%  Similarity=0.023  Sum_probs=46.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC---CCc---------------------------------cCCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE---DGQ---------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~---~~~---------------------------------~~~~~~fD~v~~d~~   61 (143)
                      .++.+|||+|||+|..+..+++..+.   +.+                                 +..+++||+|++...
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            46789999999999999988764321   111                                 123568999998753


Q ss_pred             cc---c--hHHHHHHHHhcccCCeEEEEeccC
Q 032292           62 KD---N--YCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 ~~---~--~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ..   +  ....++++.++++  |.+++.+..
T Consensus       139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~  168 (232)
T PRK06202        139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLI  168 (232)
T ss_pred             eecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence            22   1  2457888888887  555555544

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.43  E-value=1.7e-06  Score=69.69  Aligned_cols=66  Identities=26%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ....+||||||+|..++.+|+..|....                                     ...++++|.|++...
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            3468999999999999999999864211                                     134678999998642


Q ss_pred             cc----c-----hHHHHHHHHhcccCCeEEEE
Q 032292           62 KD----N-----YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        62 ~~----~-----~~~~~~~~~~~L~~gG~li~   84 (143)
                      ..    .     ....++.+.+.|+|||.+.+
T Consensus       202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             CCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            11    1     14678899999999998876

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.43  E-value=9.5e-07  Score=67.39  Aligned_cols=67  Identities=22%  Similarity=0.327  Sum_probs=48.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      .++.+|||+|||+|..++.+++..+. ..                                   +...++||+|+++..-
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            46789999999999999999988753 11                                   1112689999985210


Q ss_pred             -----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 -----------------------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 -----------------------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                                                   ..|...++.+.++|+|||++++.
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence                                         11345667777999999999883

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.42  E-value=1.9e-07  Score=61.10  Aligned_cols=58  Identities=21%  Similarity=0.337  Sum_probs=40.7

Q ss_pred             EEEEeccccHHHHHHHhhCCCC--Cc-----------------------------------cCCCCceeEEEEcCC---c
Q 032292           23 TIEIGVFTGYSLLLTALTIPED--GQ-----------------------------------SENEGSFDYAFVDAD---K   62 (143)
Q Consensus        23 vLeiG~g~G~~t~~la~~~~~~--~~-----------------------------------~~~~~~fD~v~~d~~---~   62 (143)
                      |||+|||+|..+..+++.++..  ..                                   +...++||+|++.+.   +
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999887211  11                                   223579999999443   1


Q ss_pred             ---cchHHHHHHHHhcccCCe
Q 032292           63 ---DNYCNYHERLMKLLKVGG   80 (143)
Q Consensus        63 ---~~~~~~~~~~~~~L~~gG   80 (143)
                         .+....++++.++|+|||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence               234568899999999998

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.39  E-value=3.6e-07  Score=69.53  Aligned_cols=69  Identities=19%  Similarity=0.127  Sum_probs=51.4

Q ss_pred             CEEEEEeccccHHHHHHHhhCCC----CCc--------------------------------cCCCCceeEEEEcCCc--
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPE----DGQ--------------------------------SENEGSFDYAFVDADK--   62 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~----~~~--------------------------------~~~~~~fD~v~~d~~~--   62 (143)
                      ++|||+|||+|..+..||+....    +..                                ....++||.|++.-..  
T Consensus        91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevleH  170 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLEH  170 (282)
T ss_pred             ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHHH
Confidence            67999999999999999986432    100                                2235679999986432  


Q ss_pred             -cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           63 -DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        63 -~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                       .+..+.++.+.++|+|||.+++..+..
T Consensus       171 V~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  171 VKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             HhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence             345667888889999999999876643

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.39  E-value=2.7e-06  Score=67.06  Aligned_cols=82  Identities=22%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC----C--Cc---------------------------cCC
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE----D--GQ---------------------------SEN   49 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~----~--~~---------------------------~~~   49 (143)
                      +.|.....+..++...+..+|||+|||+|..++..+.....    +  ..                           +..
T Consensus       166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~  245 (329)
T TIGR01177       166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS  245 (329)
T ss_pred             CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc
Confidence            45566677777777777789999999999998876553211    0  00                           122


Q ss_pred             CCceeEEEEcCC-------c-----cchHHHHHHHHhcccCCeEEEE
Q 032292           50 EGSFDYAFVDAD-------K-----DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        50 ~~~fD~v~~d~~-------~-----~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .++||.|++|..       .     ..|...++.+.+.|+|||.+++
T Consensus       246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~  292 (329)
T TIGR01177       246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY  292 (329)
T ss_pred             cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence            468999999731       1     1256788899999999999876

This family is found exclusively in the Archaea.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.37  E-value=2.9e-06  Score=64.06  Aligned_cols=74  Identities=22%  Similarity=0.364  Sum_probs=55.3

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------------------
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------------------   46 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------------------   46 (143)
                      ...++.+|||||.+|..|+.+|+.+.+.-.                                                  
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            346899999999999999999999865211                                                  


Q ss_pred             -------------------------cCCCCceeEEEEcC-------Cc--cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           47 -------------------------SENEGSFDYAFVDA-------DK--DNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        47 -------------------------~~~~~~fD~v~~d~-------~~--~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                                               ......||.|++-.       +.  ......|..+.++|.|||++|+.-=-|.
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk  213 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK  213 (288)
T ss_pred             cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH
Confidence                                     12356799998643       11  2356789999999999999998654443

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.37  E-value=8.6e-07  Score=71.68  Aligned_cols=70  Identities=21%  Similarity=0.248  Sum_probs=48.4

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c---CCCCceeE
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S---ENEGSFDY   55 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~---~~~~~fD~   55 (143)
                      ...++++|||+|||+|..++..+..-.....                                     .   ...++||+
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            3456799999999999998876543110000                                     0   11358999


Q ss_pred             EEEcCCc------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADK------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |++|...            ..|..++..+.++|+|||+++.-
T Consensus       297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~  338 (396)
T PRK15128        297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF  338 (396)
T ss_pred             EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9999532            23666677788999999999853

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=98.36  E-value=5.2e-06  Score=61.41  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=55.8

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC---CCCCc----------------------------------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQ----------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~---~~~~~----------------------------------   46 (143)
                      .|..--.++.|+-..+|+.|+|+|+..|-|++++|..+   ...++                                  
T Consensus        17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d   96 (206)
T PF04989_consen   17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID   96 (206)
T ss_dssp             -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence            46666778888888899999999999999999998643   22222                                  


Q ss_pred             -------cC--CCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           47 -------SE--NEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        47 -------~~--~~~~fD~v~~d~~~--~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                             ..  ......+|+.|++|  .+....++...+++++|+++|+.|....
T Consensus        97 ~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~  151 (206)
T PF04989_consen   97 PEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIE  151 (206)
T ss_dssp             THHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred             HHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecccc
Confidence                   11  12455699999876  4567778888899999999999887654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.35  E-value=1.7e-06  Score=72.04  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.1

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCC
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPE   43 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~   43 (143)
                      +.+|||+|||+|..++.+++..+.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~  162 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPN  162 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCC
Confidence            468999999999999999987653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.33  E-value=2e-06  Score=64.62  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=65.6

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCC-CCc-----------------------------cCCCCceeEEEEcCCccchHH--
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------------------------SENEGSFDYAFVDADKDNYCN--   67 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------------------------~~~~~~fD~v~~d~~~~~~~~--   67 (143)
                      -+++||+|||||..+..+-..... .|.                             ...+++||+|.. ++.-.|..  
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A-aDVl~YlG~L  204 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA-ADVLPYLGAL  204 (287)
T ss_pred             cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh-hhHHHhhcch
Confidence            579999999999887765333211 111                             245789999874 33334443  


Q ss_pred             --HHHHHHhcccCCeEEEEeccCC---CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe-----------e
Q 032292           68 --YHERLMKLLKVGGIAVYDNTLW---GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV-----------A  131 (143)
Q Consensus        68 --~~~~~~~~L~~gG~li~d~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l-----------p  131 (143)
                        .|--+..+|+|||.++|+--..   .+.+..|..+         +..-+.|........+++.+-+           |
T Consensus       205 e~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R---------yAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~p  275 (287)
T COG4976         205 EGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR---------YAHSESYVRALLAASGLEVIAIEDTTIRRDAGEP  275 (287)
T ss_pred             hhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhh---------hccchHHHHHHHHhcCceEEEeecccchhhcCCC
Confidence              4445569999999999872221   1222222211         1223455555445556655322           4


Q ss_pred             cCCeeEEEEEc
Q 032292          132 LGDGITICRRI  142 (143)
Q Consensus       132 ~~~Gl~~~~k~  142 (143)
                      +..++.+++|+
T Consensus       276 v~G~L~iark~  286 (287)
T COG4976         276 VPGILVIARKK  286 (287)
T ss_pred             CCCceEEEecC
Confidence            66777777775

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.33  E-value=4e-06  Score=62.03  Aligned_cols=81  Identities=16%  Similarity=0.159  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhh----cCCCEEEEEeccccHHHHHHHhhCCC------C---------------C-c-----------c-
Q 032292            6 IHGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPE------D---------------G-Q-----------S-   47 (143)
Q Consensus         6 ~~~~~l~~l~~~----~~~~~vLeiG~g~G~~t~~la~~~~~------~---------------~-~-----------~-   47 (143)
                      ...+++...+..    .++.+|||+|||+|..+..+++....      +               . .           + 
T Consensus        28 ~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~  107 (224)
T TIGR01983        28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE  107 (224)
T ss_pred             HHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc
Confidence            334555555543    24789999999999999988764321      0               0 0           1 


Q ss_pred             CCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEEec
Q 032292           48 ENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        48 ~~~~~fD~v~~d~---~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...++||+|++..   ...+....++.+.+.|++||.+++..
T Consensus       108 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       108 KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            1136899999864   23456678899999999999988754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.31  E-value=9.9e-07  Score=66.41  Aligned_cols=70  Identities=24%  Similarity=0.338  Sum_probs=52.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEEEE
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v~~   58 (143)
                      .+.+|||||||.|.+...+.+-.+....                                        +...+++|.|.+
T Consensus        71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence            3458999999999999999887664211                                        234577887742


Q ss_pred             ----cC-CccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           59 ----DA-DKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        59 ----d~-~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                          .+ .......+++.+.++|||||.|++-|.-
T Consensus       151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg  185 (264)
T KOG2361|consen  151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG  185 (264)
T ss_pred             EEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence                23 3346778899999999999999997754

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.31  E-value=6.3e-06  Score=60.82  Aligned_cols=76  Identities=12%  Similarity=0.080  Sum_probs=48.3

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCcee
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFD   54 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD   54 (143)
                      ++..+....+..+|||+|||+|..++.++........                                   +...++||
T Consensus        44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fD  123 (199)
T PRK10909         44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHN  123 (199)
T ss_pred             HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCce
Confidence            4555554456789999999999999964433221100                                   11234699


Q ss_pred             EEEEcCC-ccc-hHHHHHHHH--hcccCCeEEEEe
Q 032292           55 YAFVDAD-KDN-YCNYHERLM--KLLKVGGIAVYD   85 (143)
Q Consensus        55 ~v~~d~~-~~~-~~~~~~~~~--~~L~~gG~li~d   85 (143)
                      +||+|-. ... +...++.+.  .+|+++++++++
T Consensus       124 lV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        124 VVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             EEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence            9999975 222 344455554  347899988876

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.31  E-value=2.2e-06  Score=73.82  Aligned_cols=73  Identities=21%  Similarity=0.348  Sum_probs=53.0

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEE
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYA   56 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v   56 (143)
                      ++...++++|||+|||+|..++++++.-.....                                     ....++||+|
T Consensus       533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlI  612 (702)
T PRK11783        533 IGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLI  612 (702)
T ss_pred             HHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEE
Confidence            444556899999999999999999875221000                                     0124689999


Q ss_pred             EEcCCc--------------cchHHHHHHHHhcccCCeEEEEec
Q 032292           57 FVDADK--------------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        57 ~~d~~~--------------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ++|...              .+|...+..+.++|+|||++++..
T Consensus       613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~  656 (702)
T PRK11783        613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN  656 (702)
T ss_pred             EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            998531              235667888889999999998764

>PLN02823 spermine synthase

Probab=98.30  E-value=3.1e-06  Score=67.05  Aligned_cols=68  Identities=19%  Similarity=0.132  Sum_probs=49.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v~   57 (143)
                      .+|++||.||+|.|.++.++++..+....                                        ....++||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            46899999999999999988775332100                                        12346899999


Q ss_pred             EcCCcc--------c-hHHHHH-HHHhcccCCeEEEEe
Q 032292           58 VDADKD--------N-YCNYHE-RLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~~--------~-~~~~~~-~~~~~L~~gG~li~d   85 (143)
                      +|....        - -.++++ .+.+.|+|||++++.
T Consensus       182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            996321        1 135677 789999999999874

>PRK03612 spermidine synthase; Provisional

Probab=98.28  E-value=2.9e-06  Score=70.85  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=50.4

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCC-CC------------------------------Cc------------cCCCCce
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIP-ED------------------------------GQ------------SENEGSF   53 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~-~~------------------------------~~------------~~~~~~f   53 (143)
                      ..++++|||||||+|..+..+++.-+ ..                              .+            ....++|
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            35789999999999999998876522 00                              00            1234689


Q ss_pred             eEEEEcCCccc--------hHHHHHHHHhcccCCeEEEEe
Q 032292           54 DYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        54 D~v~~d~~~~~--------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |+|++|.....        ..+.++.+.++|+|||+++++
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~  414 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ  414 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence            99999964221        135788999999999999875

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.25  E-value=8e-06  Score=62.20  Aligned_cols=23  Identities=9%  Similarity=-0.013  Sum_probs=20.3

Q ss_pred             CCEEEEEeccccHHHHHHHhhCC
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +.+|||+|||+|..++.+++..+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~  109 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD  109 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC
Confidence            45899999999999999998765

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.22  E-value=7.2e-06  Score=51.75  Aligned_cols=64  Identities=25%  Similarity=0.316  Sum_probs=46.1

Q ss_pred             EEEEEeccccHHHHHHHhhCCCCCc---------------------------------cC--CCCceeEEEEcCCcc---
Q 032292           22 KTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SE--NEGSFDYAFVDADKD---   63 (143)
Q Consensus        22 ~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~--~~~~fD~v~~d~~~~---   63 (143)
                      +++|+|||+|..+..+++.......                                 ..  ..++||+|+++....   
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~   80 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV   80 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence            4899999999999988872110000                                 11  356799999986432   


Q ss_pred             -chHHHHHHHHhcccCCeEEEEe
Q 032292           64 -NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 -~~~~~~~~~~~~L~~gG~li~d   85 (143)
                       .....++.+.+.+++||++++.
T Consensus        81 ~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          81 EDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hHHHHHHHHHHHHcCCCCEEEEE
Confidence             3466788889999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.22  E-value=4.8e-06  Score=63.84  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             CCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+|++....     ......++.+.+.|+|||++++.
T Consensus       201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            5679999986421     22346889999999999999875

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.18  E-value=1.4e-05  Score=64.95  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=27.9

Q ss_pred             hHHHHHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            5 TIHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         5 ~~~~~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      |++-.++..+.. ..+..+|||+|||+|..++.+++..+
T Consensus       236 peTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p  274 (423)
T PRK14966        236 PETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP  274 (423)
T ss_pred             ccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC
Confidence            345555555544 33457999999999999999987655

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.15  E-value=3.6e-06  Score=69.15  Aligned_cols=68  Identities=13%  Similarity=0.116  Sum_probs=47.9

Q ss_pred             CCEEEEEeccccHHHHHHHhhC-------CCCCc------------------------cCCCCceeEEEEcCCccch---
Q 032292           20 AKKTIEIGVFTGYSLLLTALTI-------PEDGQ------------------------SENEGSFDYAFVDADKDNY---   65 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~-------~~~~~------------------------~~~~~~fD~v~~d~~~~~~---   65 (143)
                      ...+||+|||+|..+.+|.+.-       +.+..                        +..++.||+|++......+   
T Consensus       118 iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~  197 (506)
T PF03141_consen  118 IRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPN  197 (506)
T ss_pred             eEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhc
Confidence            4678999999999999987661       11111                        5678999999876432222   


Q ss_pred             -HHHHHHHHhcccCCeEEEEecc
Q 032292           66 -CNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        66 -~~~~~~~~~~L~~gG~li~d~~   87 (143)
                       -.++-++-|+|||||+++.+..
T Consensus       198 ~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  198 DGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             ccceeehhhhhhccCceEEecCC
Confidence             1245567799999999987643

; GO: 0008168 methyltransferase activity

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.12  E-value=6.4e-06  Score=60.08  Aligned_cols=62  Identities=27%  Similarity=0.276  Sum_probs=50.1

Q ss_pred             EEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCccchHH
Q 032292           22 KTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKDNYCN   67 (143)
Q Consensus        22 ~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~~~~~   67 (143)
                      +++|||||.|.-++.+|-..|+...                                  ....++||+|++.|- .....
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv-~~l~~  129 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV-APLDK  129 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS-SSHHH
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh-cCHHH
Confidence            8999999999999999998875211                                  246789999999985 45678


Q ss_pred             HHHHHHhcccCCeEEEE
Q 032292           68 YHERLMKLLKVGGIAVY   84 (143)
Q Consensus        68 ~~~~~~~~L~~gG~li~   84 (143)
                      .++.+.+++++||.+++
T Consensus       130 l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  130 LLELARPLLKPGGRLLA  146 (184)
T ss_dssp             HHHHHGGGEEEEEEEEE
T ss_pred             HHHHHHHhcCCCCEEEE
Confidence            88999999999999965

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=1.9e-05  Score=61.15  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHH-hhcC-CCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCC
Q 032292            5 TIHGQLMAMLL-RLVN-AKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SEN   49 (143)
Q Consensus         5 ~~~~~~l~~l~-~~~~-~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~   49 (143)
                      +++-.++..+. .... +.+|||+|||+|..++.+|+..+....                                 ...
T Consensus        94 ~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~  173 (280)
T COG2890          94 PDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL  173 (280)
T ss_pred             CchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc
Confidence            34555555533 2222 227999999999999999999874111                                 123


Q ss_pred             CCceeEEEEcC-----C----------c-------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDA-----D----------K-------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~-----~----------~-------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+|+++-     .          +             .-|...++.+..+|+|||++++.
T Consensus       174 ~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le  237 (280)
T COG2890         174 RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE  237 (280)
T ss_pred             CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence            45899999753     1          0             01233556677999999999875

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.11  E-value=8.3e-06  Score=58.76  Aligned_cols=68  Identities=24%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDY   55 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~   55 (143)
                      ..++++|||+|||+|..++.+|+..+....                                         .....+||+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            457899999999999999999887332100                                         012357999


Q ss_pred             EEEc-C--CccchHHHHHHHHhcccCCeEEEE
Q 032292           56 AFVD-A--DKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        56 v~~d-~--~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      |+.. .  ....+...++.+..+|+++|.+++
T Consensus       123 IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~  154 (173)
T PF10294_consen  123 ILASDVLYDEELFEPLVRTLKRLLKPNGKVLL  154 (173)
T ss_dssp             EEEES--S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred             EEEecccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence            9853 3  234566778888899999887554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.09  E-value=4.8e-06  Score=61.62  Aligned_cols=37  Identities=19%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             CCCCceeEEEEc---CCccchHHHHHHHHhcccCCeEEEE
Q 032292           48 ENEGSFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        48 ~~~~~fD~v~~d---~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ..++++|.|+..   +.+.+..+.+.++.++|||||++++
T Consensus       141 l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif  180 (252)
T KOG4300|consen  141 LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF  180 (252)
T ss_pred             cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence            357899999754   5677889999999999999999986

>TIGR03438 probable methyltransferase

Probab=98.09  E-value=2.8e-05  Score=60.62  Aligned_cols=24  Identities=13%  Similarity=0.057  Sum_probs=21.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++.+|||+|||+|..|..++++++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~   86 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALR   86 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhc
Confidence            558999999999999999998864

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.08  E-value=1.5e-05  Score=59.35  Aligned_cols=67  Identities=16%  Similarity=0.116  Sum_probs=45.6

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CC---------------------------------c---------c-C--CCCc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DG---------------------------------Q---------S-E--NEGS   52 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~---------------------------------~---------~-~--~~~~   52 (143)
                      +..+|||+|||.|..+++||+.--. .|                                 .         . .  ..++
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~  113 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP  113 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence            5579999999999999999976211 00                                 0         0 0  1245


Q ss_pred             eeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 032292           53 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        53 fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ||.|+-.+.     ......+++.+.++|+|||++++.
T Consensus       114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            888874432     123456889999999999976554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.08  E-value=1.1e-05  Score=59.08  Aligned_cols=100  Identities=20%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------cCCCCceeEEEEcCCcc---ch
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------SENEGSFDYAFVDADKD---NY   65 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~~~~~~fD~v~~d~~~~---~~   65 (143)
                      .+..+|||+|||.|....+|.+.-...+.                             ...+++||.|++.-...   +.
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P   91 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRP   91 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHH
Confidence            35689999999999999988775322221                             35689999999864322   22


Q ss_pred             HHHHHHHHhcccCCe--EEEEecc---------CCCccccCCCCCCCCCcccc--hHHHHHHHHHHhh
Q 032292           66 CNYHERLMKLLKVGG--IAVYDNT---------LWGGTVAVPEEQVPDHFRGS--SRQAILDLNRSLA  120 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG--~li~d~~---------~~~g~~~~~~~~~~~~~~~~--~~~~~~~f~~~l~  120 (143)
                      ...+++   +||-|.  ++-|.|.         ++.|++.....=.-+|+.+|  ..-.++.|.+-..
T Consensus        92 ~~vL~E---mlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~  156 (193)
T PF07021_consen   92 DEVLEE---MLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR  156 (193)
T ss_pred             HHHHHH---HHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence            334444   455554  4445454         22566554421112333331  1123777766544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.05  E-value=1.9e-05  Score=60.15  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=39.3

Q ss_pred             CCceeEEEEcCCc-cchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292           50 EGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  128 (143)
Q Consensus        50 ~~~fD~v~~d~~~-~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~  128 (143)
                      .+++-++.+|++. ......++.+.+.|.|||+|++||....|                ..+|+.+|.+.-.    +..-
T Consensus       175 ~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~g----------------cr~AvdeF~~~~g----i~~~  234 (248)
T PF05711_consen  175 IERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPG----------------CRKAVDEFRAEHG----ITDP  234 (248)
T ss_dssp             T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHH----------------HHHHHHHHHHHTT------S-
T ss_pred             CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChH----------------HHHHHHHHHHHcC----CCCc
Confidence            4678888888875 23346788899999999999999976532                5567888865543    3334


Q ss_pred             EeecC
Q 032292          129 HVALG  133 (143)
Q Consensus       129 ~lp~~  133 (143)
                      +.++.
T Consensus       235 l~~id  239 (248)
T PF05711_consen  235 LHPID  239 (248)
T ss_dssp             -EE-S
T ss_pred             cEEec
Confidence            45554

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.05  E-value=2.3e-05  Score=59.73  Aligned_cols=66  Identities=15%  Similarity=0.135  Sum_probs=52.7

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC-----Cc---------------------------------------cCCCCcee
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED-----GQ---------------------------------------SENEGSFD   54 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~-----~~---------------------------------------~~~~~~fD   54 (143)
                      +..++||++||||-.|..+.+.++..     ++                                       ++.+++||
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D  179 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD  179 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence            34799999999999999999887641     11                                       56678899


Q ss_pred             EEEEcCCc---cchHHHHHHHHhcccCCeEEEE
Q 032292           55 YAFVDADK---DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        55 ~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ...+....   .+..+.++++.|+|||||++.+
T Consensus       180 ~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  180 AYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             eEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence            88876543   4567889999999999998874

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.04  E-value=3e-05  Score=57.46  Aligned_cols=24  Identities=13%  Similarity=0.059  Sum_probs=20.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      .++.+|||+|||+|..+..+++..
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~   85 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG   85 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC
Confidence            456899999999999999998653

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.04  E-value=7.8e-05  Score=57.83  Aligned_cols=68  Identities=26%  Similarity=0.287  Sum_probs=52.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCC-c---------------------------------------cCCCCceeEEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDG-Q---------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~-~---------------------------------------~~~~~~fD~v~   57 (143)
                      .+|++||-||-|.|..+..+.+..+... .                                       ....++||+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            4568999999999999999988764211 0                                       22345899999


Q ss_pred             EcCCcc-ch------HHHHHHHHhcccCCeEEEEe
Q 032292           58 VDADKD-NY------CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~~-~~------~~~~~~~~~~L~~gG~li~d   85 (143)
                      +|+... .+      .++++.+.+.|+++|++++.
T Consensus       155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            997432 22      57899999999999999986

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.03  E-value=4.1e-05  Score=54.62  Aligned_cols=72  Identities=8%  Similarity=-0.102  Sum_probs=46.1

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCCccc
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDADKDN   64 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~~~~   64 (143)
                      ...+..+|||||||+|..+..+++.... .+.                              +....+||.|+.+..-..
T Consensus        10 ~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~   89 (169)
T smart00650       10 NLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI   89 (169)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence            3445679999999999999999887321 000                              112235899988754332


Q ss_pred             hHHHHHHHHh--cccCCeEEEEecc
Q 032292           65 YCNYHERLMK--LLKVGGIAVYDNT   87 (143)
Q Consensus        65 ~~~~~~~~~~--~L~~gG~li~d~~   87 (143)
                      ....+..+.+  .+.++|+++++.-
T Consensus        90 ~~~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       90 STPILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             HHHHHHHHHhcCCCcceEEEEEEHH
Confidence            2345555553  3458899988754

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.00  E-value=3.5e-05  Score=57.07  Aligned_cols=69  Identities=17%  Similarity=0.099  Sum_probs=45.5

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCCc---
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDADK---   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~~---   62 (143)
                      ..+.++|||+|||+|..+.++++.... .|.                              ....++||+|++....   
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~  132 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY  132 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence            345789999999999999999875221 000                              1113679999864321   


Q ss_pred             --cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 --DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 --~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                        .+....+..+.+.+++++++.+.
T Consensus       133 ~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       133 PASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEEC
Confidence              12335677788888887777664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=3.1e-05  Score=59.46  Aligned_cols=75  Identities=17%  Similarity=0.119  Sum_probs=57.9

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cC
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SE   48 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~   48 (143)
                      ..++..+....+..+|+|-|||+|..+..+++++.+.|+                                       ..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            445566667888999999999999999999999987665                                       12


Q ss_pred             CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        49 ~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .+..+|.||+|-.  ..+.++.-+.+.|+.+|.-++
T Consensus       174 ks~~aDaVFLDlP--aPw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  174 KSLKADAVFLDLP--APWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             cccccceEEEcCC--ChhhhhhhhHHHhhhcCceEE
Confidence            3678999999964  456667777778888774433

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.96  E-value=1.6e-05  Score=58.87  Aligned_cols=101  Identities=13%  Similarity=0.087  Sum_probs=60.9

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC--------CC-Cc--------cCCCCceeEEEEcCC--ccchHHHH
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP--------ED-GQ--------SENEGSFDYAFVDAD--KDNYCNYH   69 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~--------~~-~~--------~~~~~~fD~v~~d~~--~~~~~~~~   69 (143)
                      .++..|....+...|-|+|||.+-.+..+.....        .+ ..        |..+++.|+++..-.  ..+|..++
T Consensus        62 ~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi  141 (219)
T PF05148_consen   62 VIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFI  141 (219)
T ss_dssp             HHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHH
Confidence            4455555554557999999999988765532210        00 00        667899999987654  36899999


Q ss_pred             HHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292           70 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  128 (143)
Q Consensus        70 ~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~  128 (143)
                      .++.|.||+||.+.+-++-.+-                  ...+.|.+.+..- +|...
T Consensus       142 ~EA~RvLK~~G~L~IAEV~SRf------------------~~~~~F~~~~~~~-GF~~~  181 (219)
T PF05148_consen  142 REANRVLKPGGILKIAEVKSRF------------------ENVKQFIKALKKL-GFKLK  181 (219)
T ss_dssp             HHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHHCT-TEEEE
T ss_pred             HHHHheeccCcEEEEEEecccC------------------cCHHHHHHHHHHC-CCeEE
Confidence            9999999999999887765321                  1368888887643 55544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.96  E-value=4.6e-05  Score=56.86  Aligned_cols=64  Identities=27%  Similarity=0.302  Sum_probs=48.9

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCC-CCc-eeEEEEcCCccc
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SEN-EGS-FDYAFVDADKDN   64 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~-~~~-fD~v~~d~~~~~   64 (143)
                      +++++|||+|.|.-++.+|-..|+...                                 ... ..+ ||+|.+.|- ..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-a~  146 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-AS  146 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc-cc
Confidence            689999999999999999966664211                                 111 123 999999984 45


Q ss_pred             hHHHHHHHHhcccCCeEEEE
Q 032292           65 YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~   84 (143)
                      ....++.+.+++++||.+++
T Consensus       147 L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         147 LNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             hHHHHHHHHHhcccCCcchh
Confidence            66778889999999998853

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.96  E-value=2.5e-05  Score=56.96  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=40.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------c----CCCCceeEEEEcCCc---cch
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------S----ENEGSFDYAFVDADK---DNY   65 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------~----~~~~~fD~v~~d~~~---~~~   65 (143)
                      .+..+|||+|||+|..+..+++.......                         .    ..+++||+|++....   .+.
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~   91 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP   91 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence            35679999999999999988765321100                         1    224689999987532   344


Q ss_pred             HHHHHHHHhcccC
Q 032292           66 CNYHERLMKLLKV   78 (143)
Q Consensus        66 ~~~~~~~~~~L~~   78 (143)
                      ...++++.+.+++
T Consensus        92 ~~~l~e~~r~~~~  104 (194)
T TIGR02081        92 EEILDEMLRVGRH  104 (194)
T ss_pred             HHHHHHHHHhCCe
Confidence            5567777666554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.93  E-value=4e-05  Score=57.24  Aligned_cols=65  Identities=17%  Similarity=0.131  Sum_probs=44.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------------------c---CCCCc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------------------S---ENEGS   52 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------------------~---~~~~~   52 (143)
                      +..+|||+|||.|..+++||+.--. .|.                                          .   ...+.
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~  116 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD  116 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence            4579999999999999999976210 000                                          0   01246


Q ss_pred             eeEEEEcC-----CccchHHHHHHHHhcccCCeEEE
Q 032292           53 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        53 fD~v~~d~-----~~~~~~~~~~~~~~~L~~gG~li   83 (143)
                      ||+|+-.+     .......+++.+.++|+|||+++
T Consensus       117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~  152 (218)
T PRK13255        117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL  152 (218)
T ss_pred             eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence            88888433     22334678999999999998644

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.93  E-value=5.5e-05  Score=54.45  Aligned_cols=78  Identities=19%  Similarity=0.218  Sum_probs=48.4

Q ss_pred             HHHHHHHHhhc-----CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c
Q 032292            8 GQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S   47 (143)
Q Consensus         8 ~~~l~~l~~~~-----~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~   47 (143)
                      -++...+.+..     ++.+|||+||++|.++-++++...+.++                                   .
T Consensus         7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~   86 (181)
T PF01728_consen    7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLP   86 (181)
T ss_dssp             HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred             HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhcc
Confidence            34444444433     3489999999999999999988722111                                   1


Q ss_pred             CCCCceeEEEEcCCc--------cch------HHHHHHHHhcccCCeEEEEe
Q 032292           48 ENEGSFDYAFVDADK--------DNY------CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~--------~~~------~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...++||+|++|+..        ..+      ...+..+.++|++||.+++-
T Consensus        87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            123689999999831        111      12445556899999988763

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.93  E-value=5.1e-05  Score=57.03  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=54.2

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------cCCCCceeEEEEcCCccch---
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------SENEGSFDYAFVDADKDNY---   65 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------~~~~~~fD~v~~d~~~~~~---   65 (143)
                      ...+.++|||||.|+|..+..++++.|. .+                           ...+. +|++++..-.+++   
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~-~D~~~l~~vLh~~~d~  174 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV-ADVYLLRHVLHDWSDE  174 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS-ESEEEEESSGGGS-HH
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCCC-CcceeeccHhhhhccccccccccccccHHhhhcc-ccceeeehhhhhcchH
Confidence            3456789999999999999999999885 22                           11233 9999987644443   


Q ss_pred             --HHHHHHHHhcccCC--eEEEEeccCCC
Q 032292           66 --CNYHERLMKLLKVG--GIAVYDNTLWG   90 (143)
Q Consensus        66 --~~~~~~~~~~L~~g--G~li~d~~~~~   90 (143)
                        ...++++.+.|+||  |.|++.+.+..
T Consensus       175 ~~~~iL~~~~~al~pg~~g~llI~e~~~~  203 (241)
T PF00891_consen  175 DCVKILRNAAAALKPGKDGRLLIIEMVLP  203 (241)
T ss_dssp             HHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence              34788999999999  98887766643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.91  E-value=0.00032  Score=53.61  Aligned_cols=108  Identities=16%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC-Cc-----------------------cCCCCceeEEEEcC---CccchHHHHHH
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED-GQ-----------------------SENEGSFDYAFVDA---DKDNYCNYHER   71 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~-~~-----------------------~~~~~~fD~v~~d~---~~~~~~~~~~~   71 (143)
                      +..++||||.|-|..|..|+..+.+- +.                       ...+.+||+|-+--   ........++.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~  173 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLLRD  173 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHHHH
Confidence            56789999999999999999887641 00                       22346899997632   12356778999


Q ss_pred             HHhcccCCeEEEEeccC-CCcccc-------CCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292           72 LMKLLKVGGIAVYDNTL-WGGTVA-------VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  128 (143)
Q Consensus        72 ~~~~L~~gG~li~d~~~-~~g~~~-------~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~  128 (143)
                      +.+.|+|+|++++.=++ |+-.|.       .|.+..+-.-.+ ....+..|. .+-.--+|+..
T Consensus       174 i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~-~v~~p~GF~v~  236 (265)
T PF05219_consen  174 IRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLV-NVFEPAGFEVE  236 (265)
T ss_pred             HHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHH-HHHHhcCCEEE
Confidence            99999999999876443 222222       222112222222 555677777 44444466653

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.90  E-value=6.8e-06  Score=61.17  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhhc-----CCCEEEEEeccccHHHHHHHhhCCCC----------------------Cc------------c
Q 032292            7 HGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPED----------------------GQ------------S   47 (143)
Q Consensus         7 ~~~~l~~l~~~~-----~~~~vLeiG~g~G~~t~~la~~~~~~----------------------~~------------~   47 (143)
                      +-.||..+....     +..+.||.|+|.|-.|-.+....-+.                      .+            .
T Consensus        38 S~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~  117 (218)
T PF05891_consen   38 SRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT  117 (218)
T ss_dssp             HHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--
T ss_pred             HHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc
Confidence            345666655442     45799999999999998653322110                      00            1


Q ss_pred             CCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe-ccCCCcc-ccCCCCC
Q 032292           48 ENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD-NTLWGGT-VAVPEEQ   99 (143)
Q Consensus        48 ~~~~~fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d-~~~~~g~-~~~~~~~   99 (143)
                      ....+||+||+-=.     -.+...+++++...|+|||+|++- |+.-.|. +.++++.
T Consensus       118 P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds  176 (218)
T PF05891_consen  118 PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS  176 (218)
T ss_dssp             --TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT
T ss_pred             CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC
Confidence            22468999997421     135678999999999999999885 6666664 6665543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PHA03412 putative methyltransferase; Provisional

Probab=97.87  E-value=0.00023  Score=53.92  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC--CCc------------------------------cCCCCceeEEEEcCCc----
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE--DGQ------------------------------SENEGSFDYAFVDADK----   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~--~~~------------------------------~~~~~~fD~v~~d~~~----   62 (143)
                      ...+|||+|||+|..++.+++.++.  ...                              ....++||+|+++-.-    
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence            4689999999999999999876431  111                              1124689999986310    


Q ss_pred             -----c------chHHHHHHHHhcccCCeEEE
Q 032292           63 -----D------NYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        63 -----~------~~~~~~~~~~~~L~~gG~li   83 (143)
                           .      .....++.+.+++++|+.|+
T Consensus       129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL  160 (241)
T PHA03412        129 TSDFKGKYTGAEFEYKVIERASQIARQGTFII  160 (241)
T ss_pred             ccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence                 0      12346777778777777644

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.86  E-value=8.9e-05  Score=57.10  Aligned_cols=39  Identities=10%  Similarity=0.178  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHhh------cCCCEEEEEeccccHHHHHHHhhCCC
Q 032292            5 TIHGQLMAMLLRL------VNAKKTIEIGVFTGYSLLLTALTIPE   43 (143)
Q Consensus         5 ~~~~~~l~~l~~~------~~~~~vLeiG~g~G~~t~~la~~~~~   43 (143)
                      |++-+++......      .++..+||+|||+|..++.++..+++
T Consensus       128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~  172 (328)
T KOG2904|consen  128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQ  172 (328)
T ss_pred             ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCC
Confidence            4555555555432      24568999999999999999999885

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.84  E-value=5.1e-05  Score=57.28  Aligned_cols=76  Identities=12%  Similarity=0.091  Sum_probs=53.9

Q ss_pred             HHHHHHHhhcCCC-EEEEEeccccHHHHHHHhhCCCC-Cc-------------------------------cC--CCCce
Q 032292            9 QLMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPED-GQ-------------------------------SE--NEGSF   53 (143)
Q Consensus         9 ~~l~~l~~~~~~~-~vLeiG~g~G~~t~~la~~~~~~-~~-------------------------------~~--~~~~f   53 (143)
                      .++..++...... .++|+|||+|..++.+|....+- +.                               +.  .+++.
T Consensus        22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SV  101 (261)
T KOG3010|consen   22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESV  101 (261)
T ss_pred             HHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcce
Confidence            4666777766655 78999999998888888775420 00                               22  26889


Q ss_pred             eEEEEcCCc--cchHHHHHHHHhcccCCe-EEEE
Q 032292           54 DYAFVDADK--DNYCNYHERLMKLLKVGG-IAVY   84 (143)
Q Consensus        54 D~v~~d~~~--~~~~~~~~~~~~~L~~gG-~li~   84 (143)
                      |+|.+--..  -+..++++.+.++||+.| ++.+
T Consensus       102 DlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  102 DLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             eeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence            999864322  355778899999999977 6655

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.81  E-value=0.00013  Score=60.42  Aligned_cols=83  Identities=19%  Similarity=0.259  Sum_probs=57.9

Q ss_pred             HHHHHHHHHH--hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292            6 IHGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------   46 (143)
Q Consensus         6 ~~~~~l~~l~--~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------   46 (143)
                      ....+...++  ...++.+|||++++.|.=|..+|..+...|.                                     
T Consensus        98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~  177 (470)
T PRK11933         98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG  177 (470)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh
Confidence            3344444444  4467789999999999999999998865443                                     


Q ss_pred             cCCCCceeEEEEcCCc-------cc------h------------HHHHHHHHhcccCCeEEEEeccC
Q 032292           47 SENEGSFDYAFVDADK-------DN------Y------------CNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~-------~~------~------------~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ....+.||.|++|+.=       .+      +            .+.++.+.++|||||+||.....
T Consensus       178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence            0123579999999620       00      0            23566778999999999886443

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.80  E-value=6e-05  Score=55.38  Aligned_cols=64  Identities=27%  Similarity=0.283  Sum_probs=47.8

Q ss_pred             CEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEcCC-
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVDAD-   61 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d~~-   61 (143)
                      ..+||||||.|...+.+|+..|+...                                      ...++++|.|++.-. 
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            38899999999999999999886311                                      134689999998642 


Q ss_pred             ---cc-------chHHHHHHHHhcccCCeEEEE
Q 032292           62 ---KD-------NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        62 ---~~-------~~~~~~~~~~~~L~~gG~li~   84 (143)
                         +.       -....++.+.+.|+|||.|.+
T Consensus        99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence               11       124688899999999998865

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.80  E-value=0.00021  Score=52.19  Aligned_cols=75  Identities=8%  Similarity=-0.072  Sum_probs=49.6

Q ss_pred             HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-C-C-CC
Q 032292           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S-E-N-EG   51 (143)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~-~-~-~~   51 (143)
                      ...+.......++||++||+|..++.++.+......                                    . . . ..
T Consensus        41 f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~  120 (189)
T TIGR00095        41 FNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPT  120 (189)
T ss_pred             HHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCC
Confidence            333333346789999999999999998876432111                                    1 1 1 12


Q ss_pred             ceeEEEEcCCc--cchHHHHHHHH--hcccCCeEEEEe
Q 032292           52 SFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD   85 (143)
Q Consensus        52 ~fD~v~~d~~~--~~~~~~~~~~~--~~L~~gG~li~d   85 (143)
                      .||+||.|-..  ..+...++.+.  .+|+++|++++.
T Consensus       121 ~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       121 FDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             CceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence            48999998643  33455565554  579999999886

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.75  E-value=0.00028  Score=53.15  Aligned_cols=65  Identities=23%  Similarity=0.272  Sum_probs=49.3

Q ss_pred             CEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEcC--
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVDA--   60 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d~--   60 (143)
                      ..+||||||.|-+.+.+|+..|+...                                      -..+++.|-|++.-  
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            58999999999999999999886321                                      12345888888753  


Q ss_pred             -Cc------c--chHHHHHHHHhcccCCeEEEEe
Q 032292           61 -DK------D--NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 -~~------~--~~~~~~~~~~~~L~~gG~li~d   85 (143)
                       |+      .  -+...++.+.+.|+|||.|-+-
T Consensus       130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             CCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence             32      1  1356889999999999999763

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.75  E-value=0.0002  Score=58.71  Aligned_cols=67  Identities=19%  Similarity=0.157  Sum_probs=45.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------c------CCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------S------ENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~------~~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..++.+|+.... -+.                              .      ...++||+|++|.
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP  375 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP  375 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence            35579999999999999999987531 000                              0      1135799999986


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .-....+.++.+.+ +++++++.++
T Consensus       376 Pr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        376 PRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             CCcChHHHHHHHHh-cCCCeEEEEE
Confidence            54334455554444 6888888764

>PRK00536 speE spermidine synthase; Provisional

Probab=97.73  E-value=0.00014  Score=55.91  Aligned_cols=65  Identities=11%  Similarity=-0.010  Sum_probs=51.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEEEcCCc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAFVDADK   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~~d~~~   62 (143)
                      .+|++||-||.|-|..+..+.+.-. ...                                  . ...++||+|++|...
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~  149 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEP  149 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCC
Confidence            5799999999999999999988732 111                                  1 123789999999642


Q ss_pred             cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                        -.+.++.+.+.|+|||+++.+
T Consensus       150 --~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        150 --DIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             --ChHHHHHHHHhcCCCcEEEEC
Confidence              256778899999999999875

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.71  E-value=0.00051  Score=50.17  Aligned_cols=71  Identities=28%  Similarity=0.367  Sum_probs=47.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC---Cc---------------------------------cCCCCceeEEEE----
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED---GQ---------------------------------SENEGSFDYAFV----   58 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~---~~---------------------------------~~~~~~fD~v~~----   58 (143)
                      ++.+|||+|||.|.....|++.--++   |.                                 ....++||+|.=    
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence            45699999999999988887652211   11                                 133567888762    


Q ss_pred             cC-----Cc--cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           59 DA-----DK--DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        59 d~-----~~--~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      |+     +.  .....|++.+.++|+|||++++-...|
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            22     11  222346778889999999999865554

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.68  E-value=0.00012  Score=54.78  Aligned_cols=67  Identities=25%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC----CC-------------------------ccCCCCceeEEEE--------cCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE----DG-------------------------QSENEGSFDYAFV--------DAD   61 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~----~~-------------------------~~~~~~~fD~v~~--------d~~   61 (143)
                      .+.-|||||||+|.|+..+...--.    +.                         .++.+++||-+++        +++
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~  129 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNAD  129 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccC
Confidence            3789999999999998876543110    00                         0677899999874        333


Q ss_pred             cc------chHHHHHHHHhcccCCeEEEEe
Q 032292           62 KD------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ~~------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +.      ....+|..++.+|++|+..++.
T Consensus       130 ~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  130 KSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             ccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            32      1234677888999999998875

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.63  E-value=0.00043  Score=49.79  Aligned_cols=82  Identities=20%  Similarity=0.094  Sum_probs=58.0

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC-CCCCc-----------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI-PEDGQ-----------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~-~~~~~-----------------------------------   46 (143)
                      .|+-.++-|...+.-.++.-|||+|.|||..|..+.+.. +++..                                   
T Consensus        32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~  111 (194)
T COG3963          32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG  111 (194)
T ss_pred             CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence            345556666666666678899999999999999977654 32211                                   


Q ss_pred             cCCCCceeEEEEcCCccc-----hHHHHHHHHhcccCCeEEEE
Q 032292           47 SENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~~~-----~~~~~~~~~~~L~~gG~li~   84 (143)
                      ......||.|++.-...+     -.+.++.+...|+.||.++-
T Consensus       112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            223456999998654322     34678899999999998874

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.63  E-value=0.00036  Score=54.72  Aligned_cols=68  Identities=10%  Similarity=-0.040  Sum_probs=43.2

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .++.+|||+|||+|..++.+|+.... -+.                                 ....++||+|++|-...
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~  251 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR  251 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence            35789999999999999999975321 000                                 11234799999996533


Q ss_pred             chHHHHHHHHhcccCCeEEEEe
Q 032292           64 NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .....+...+..++|++++.+.
T Consensus       252 G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        252 GIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             CccHHHHHHHHHcCCCeEEEEE
Confidence            3322333334456787777653

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.62  E-value=0.00019  Score=54.56  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=49.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCC-ceeEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEG-SFDYA   56 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~-~fD~v   56 (143)
                      .+|++||-||-|.|..+..+.+.-+....                                        ....+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            36999999999999999998766432100                                        22344 89999


Q ss_pred             EEcCCccc-------hHHHHHHHHhcccCCeEEEEec
Q 032292           57 FVDADKDN-------YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        57 ~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ++|.....       -.+.++.+.+.|+|||+++...
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            99975321       1478999999999999998753

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.57  E-value=0.00032  Score=57.21  Aligned_cols=66  Identities=14%  Similarity=0.016  Sum_probs=45.1

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------c---CCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------S---ENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~---~~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..++++|+.... -+.                                 +   ...++||+|++|.
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP  370 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP  370 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence            35589999999999999999986431 000                                 0   1134699999997


Q ss_pred             Cccc-hHHHHHHHHhcccCCeEEEE
Q 032292           61 DKDN-YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        61 ~~~~-~~~~~~~~~~~L~~gG~li~   84 (143)
                      .... ....++.+. .+++++++.+
T Consensus       371 Pr~G~~~~~l~~l~-~l~~~~ivyv  394 (431)
T TIGR00479       371 PRKGCAAEVLRTII-ELKPERIVYV  394 (431)
T ss_pred             CCCCCCHHHHHHHH-hcCCCEEEEE
Confidence            5433 455566544 4789887765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.54  E-value=0.00014  Score=57.42  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=22.7

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCC
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +.+.+.|||+|||||..++.-|++..
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA   83 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGA   83 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCc
Confidence            45789999999999999999888753

>PHA03411 putative methyltransferase; Provisional

Probab=97.48  E-value=0.00087  Score=51.83  Aligned_cols=24  Identities=8%  Similarity=-0.058  Sum_probs=20.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ....+|||+|||+|..++.+++..
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~   86 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRC   86 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhC
Confidence            346799999999999999887764

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.47  E-value=0.00027  Score=51.43  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=50.7

Q ss_pred             HHHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cC
Q 032292            9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SE   48 (143)
Q Consensus         9 ~~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~   48 (143)
                      .+...|... ....++||+=||||..++..+.+-.....                                       ..
T Consensus        31 alFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~  110 (183)
T PF03602_consen   31 ALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK  110 (183)
T ss_dssp             HHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH
T ss_pred             HHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc
Confidence            455555555 67899999999999999986655322111                                       12


Q ss_pred             CCCceeEEEEcCCc--cc-hHHHHHHHH--hcccCCeEEEEec
Q 032292           49 NEGSFDYAFVDADK--DN-YCNYHERLM--KLLKVGGIAVYDN   86 (143)
Q Consensus        49 ~~~~fD~v~~d~~~--~~-~~~~~~~~~--~~L~~gG~li~d~   86 (143)
                      ...+||+||+|-.-  .. +...++.+.  ++|+++|+|++..
T Consensus       111 ~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  111 KGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             CTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             cCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            46899999999632  23 366777776  8999999999863

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.47  E-value=0.0012  Score=53.45  Aligned_cols=74  Identities=20%  Similarity=0.292  Sum_probs=54.3

Q ss_pred             HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCcee
Q 032292           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFD   54 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD   54 (143)
                      ....+.++||++=|+||..|+..|..-.....                                        .....+||
T Consensus       213 ~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD  292 (393)
T COG1092         213 GELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD  292 (393)
T ss_pred             hhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence            33345899999999999999998876431111                                        12345999


Q ss_pred             EEEEcCC------------ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           55 YAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        55 ~v~~d~~------------~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +|++|-.            ..+|.+.+..+.++|+|||++++.+..
T Consensus       293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9999952            135777788889999999999886543

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.44  E-value=0.00022  Score=53.67  Aligned_cols=22  Identities=18%  Similarity=0.099  Sum_probs=20.0

Q ss_pred             CCCEEEEEeccccHHHHHHHhh
Q 032292           19 NAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +.++|||+|||||..|.++++.
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~   96 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK   96 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc
Confidence            5679999999999999999886

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=97.44  E-value=0.0015  Score=48.85  Aligned_cols=80  Identities=24%  Similarity=0.311  Sum_probs=52.6

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------------   46 (143)
                      .|.--+++..+ ...++.+||..|||.|+-..|||+.--+ -|.                                    
T Consensus        23 ~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   23 NPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             THHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             CHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            34444555552 3455679999999999999999986211 000                                    


Q ss_pred             ---------cCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEE
Q 032292           47 ---------SENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 ---------~~~~~~fD~v~~d~-----~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                               +...++||+|+=.+     ......++.+.+.++|+|||.++.
T Consensus       102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen  102 YCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             EES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             EEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence                     11224799998433     224456788999999999999443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.41  E-value=0.0012  Score=53.23  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             CEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c-CC-CCceeEEEEcCCccch
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S-EN-EGSFDYAFVDADKDNY   65 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~-~~-~~~fD~v~~d~~~~~~   65 (143)
                      .+|||++||+|..++.+|...+....                                 . .. .++||+|++|.- ...
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-Gs~  137 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-GSP  137 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC-CCc
Confidence            58999999999999999877552100                                 0 11 467999999964 344


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 032292           66 CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..+++.+...+++||++.+.
T Consensus       138 ~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        138 APFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             HHHHHHHHHHhcCCCEEEEE
Confidence            56778878889999999886

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.38  E-value=0.00097  Score=52.53  Aligned_cols=22  Identities=23%  Similarity=0.157  Sum_probs=19.8

Q ss_pred             CCCEEEEEeccccHHHHHHHhh
Q 032292           19 NAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      ++.+|||+|||+|..++.+++.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~  165 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE  165 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC
Confidence            4679999999999999999875

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.00088  Score=49.59  Aligned_cols=68  Identities=19%  Similarity=0.188  Sum_probs=50.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCc--
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADK--   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~--   62 (143)
                      .+..+|+|+|+..|.|+..+++.+.+.++                                 .....++|+|.+|...  
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~  123 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNT  123 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCc
Confidence            35799999999999999999999876432                                 1234457999999753  


Q ss_pred             ------cchH------HHHHHHHhcccCCeEEEEe
Q 032292           63 ------DNYC------NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 ------~~~~------~~~~~~~~~L~~gG~li~d   85 (143)
                            +++.      ..++.+..+|++||.+++-
T Consensus       124 ~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K  158 (205)
T COG0293         124 SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK  158 (205)
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence                  1221      2456667999999999885

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.35  E-value=0.0017  Score=49.15  Aligned_cols=66  Identities=20%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-------C------Cc-------------------------cCCCCceeEEEEc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-------D------GQ-------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-------~------~~-------------------------~~~~~~fD~v~~d   59 (143)
                      .+..+|||.-+|-||.++..+++-..       +      ++                         .+.+++||+|+-|
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD  212 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD  212 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence            35789999999999999997766320       0      00                         4567889999987


Q ss_pred             CCc-----cch-HHHHHHHHhcccCCeEEE
Q 032292           60 ADK-----DNY-CNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        60 ~~~-----~~~-~~~~~~~~~~L~~gG~li   83 (143)
                      -.-     +-| .++++++.+.|+|||.+.
T Consensus       213 PPRfS~AgeLYseefY~El~RiLkrgGrlF  242 (287)
T COG2521         213 PPRFSLAGELYSEEFYRELYRILKRGGRLF  242 (287)
T ss_pred             CCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence            421     223 357889999999999985

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.31  E-value=0.0015  Score=52.48  Aligned_cols=67  Identities=10%  Similarity=-0.025  Sum_probs=43.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .++.+|||+|||+|..++.+|..... -+.                                 ....++||+|++|-.-.
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~  311 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR  311 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence            35689999999999999999865321 000                                 01124699999996432


Q ss_pred             c-hHHHHHHHHhcccCCeEEEEe
Q 032292           64 N-YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ~-~~~~~~~~~~~L~~gG~li~d   85 (143)
                      . ....++.+. .++|++++.+.
T Consensus       312 G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       312 GIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             CCcHHHHHHHH-hcCCCeEEEEE
Confidence            2 234444443 57898888764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.31  E-value=0.0011  Score=55.41  Aligned_cols=66  Identities=21%  Similarity=0.100  Sum_probs=50.0

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC-
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA-   60 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~-   60 (143)
                      ....+||||||.|-.++.+|+..|+...                                     ...++++|-|++.- 
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            4578899999999999999999886321                                     23467899998854 


Q ss_pred             --Cc--c------chHHHHHHHHhcccCCeEEEE
Q 032292           61 --DK--D------NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        61 --~~--~------~~~~~~~~~~~~L~~gG~li~   84 (143)
                        |.  .      -....++.+.+.|+|||.|-+
T Consensus       427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence              21  1      124578899999999998865

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.21  E-value=0.0014  Score=50.31  Aligned_cols=80  Identities=13%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC------CCCc---------cCCCCceeEEEEcCC--ccchHHHHHH
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP------EDGQ---------SENEGSFDYAFVDAD--KDNYCNYHER   71 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~------~~~~---------~~~~~~fD~v~~d~~--~~~~~~~~~~   71 (143)
                      .++..+-...+...|-|+|||.+-.+..--..+.      .+.+         |..+++.|+++....  ..++...+.+
T Consensus       170 ~ii~~ik~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kE  249 (325)
T KOG3045|consen  170 VIIRKIKRRPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKE  249 (325)
T ss_pred             HHHHHHHhCcCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHH
Confidence            4555555555567889999998876641111100      0000         567889999876643  2578889999


Q ss_pred             HHhcccCCeEEEEeccC
Q 032292           72 LMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        72 ~~~~L~~gG~li~d~~~   88 (143)
                      +.+.|++||.+-+..+-
T Consensus       250 a~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  250 ANRILKPGGLLYIAEVK  266 (325)
T ss_pred             HHHHhccCceEEEEehh
Confidence            99999999999887664

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.20  E-value=0.0029  Score=52.38  Aligned_cols=103  Identities=16%  Similarity=0.207  Sum_probs=67.7

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhh-------CCCCCc----------------------cCCCCceeEEEEcCCccc---
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALT-------IPEDGQ----------------------SENEGSFDYAFVDADKDN---   64 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~-------~~~~~~----------------------~~~~~~fD~v~~d~~~~~---   64 (143)
                      ...-.+|+|..+|.|-.++.|.+.       +|..+.                      +..+.+||+|+.++-.+.   
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~  442 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKD  442 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcc
Confidence            345689999999999999988654       111111                      456789999998864333   


Q ss_pred             ---hHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEeecC------Ce
Q 032292           65 ---YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG------DG  135 (143)
Q Consensus        65 ---~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~lp~~------~G  135 (143)
                         ....+-++-|.|||||.+++.|...                  ....++.....+    ++++.+.-..      ..
T Consensus       443 rC~~~~illEmDRILRP~G~~iiRD~~~------------------vl~~v~~i~~~l----rW~~~~~d~e~g~~~~Ek  500 (506)
T PF03141_consen  443 RCEMEDILLEMDRILRPGGWVIIRDTVD------------------VLEKVKKIAKSL----RWEVRIHDTEDGPDGPEK  500 (506)
T ss_pred             cccHHHHHHHhHhhcCCCceEEEeccHH------------------HHHHHHHHHHhC----cceEEEEecCCCCCCCce
Confidence               3345666679999999999865431                  333456655554    4555554333      56


Q ss_pred             eEEEEE
Q 032292          136 ITICRR  141 (143)
Q Consensus       136 l~~~~k  141 (143)
                      +++|+|
T Consensus       501 iL~~~K  506 (506)
T PF03141_consen  501 ILICQK  506 (506)
T ss_pred             EEEEEC
Confidence            788776

; GO: 0008168 methyltransferase activity

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.19  E-value=0.00062  Score=52.37  Aligned_cols=39  Identities=10%  Similarity=-0.192  Sum_probs=29.1

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++...+.+...+...+..+|||||||+|..|..+++..+
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~   65 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA   65 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC
Confidence            444444444445556778999999999999999998754

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.08  E-value=0.00087  Score=51.14  Aligned_cols=39  Identities=13%  Similarity=-0.078  Sum_probs=31.3

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      +++...+.+...+...+..+|||||||+|..|..+++..
T Consensus        13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~   51 (258)
T PRK14896         13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA   51 (258)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC
Confidence            455666666666666678899999999999999999873

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.08  E-value=0.00065  Score=55.95  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=41.6

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCC---CCc------------------------------------cCCCCceeEEEEcC
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPE---DGQ------------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~---~~~------------------------------------~~~~~~fD~v~~d~   60 (143)
                      .+.|+|+|||+|..+...+++...   ..+                                    -...++.|+|++.-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            468999999999998776665411   000                                    12356899998742


Q ss_pred             -----CccchHHHHHHHHhcccCCeEEE
Q 032292           61 -----DKDNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        61 -----~~~~~~~~~~~~~~~L~~gG~li   83 (143)
                           +.+-.++.++...+.|+|||+++
T Consensus       267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  267 LGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence                 23345677877789999999986

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.08  E-value=0.0029  Score=51.04  Aligned_cols=64  Identities=9%  Similarity=0.045  Sum_probs=49.3

Q ss_pred             CEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCCcc
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      -+|||.-||+|..++.+++..+....                                     .....+||+|++|. ..
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG  124 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG  124 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence            48999999999999999987531001                                     11235799999998 34


Q ss_pred             chHHHHHHHHhcccCCeEEEEe
Q 032292           64 NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....+++.+.+.+++||+|.+.
T Consensus       125 s~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       125 TPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             CcHHHHHHHHHhcccCCEEEEE
Confidence            4467889999999999999876

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.05  E-value=0.0014  Score=48.19  Aligned_cols=37  Identities=27%  Similarity=0.322  Sum_probs=24.5

Q ss_pred             CCCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292           49 NEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        49 ~~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..++||+||+.--.     ..-...++.+.+.|+|||+|++-
T Consensus       133 ~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  133 PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             ----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence            35789999997632     22345788889999999999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.01  E-value=0.0012  Score=50.23  Aligned_cols=39  Identities=13%  Similarity=-0.092  Sum_probs=29.0

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++...+-+...+...+..+|||||||+|..|..+++..+
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~   52 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK   52 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC
Confidence            344444444444556778999999999999999998764

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.98  E-value=0.0062  Score=44.74  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=51.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADK-   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~-   62 (143)
                      .+..+|||+||..|.|+....+...+.|.                                  ..++.+.|.|++|..+ 
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapn  147 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPN  147 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCC
Confidence            35789999999999999988888755443                                  2345789999998532 


Q ss_pred             ------cchHHHHHH-------HHhcccCCeEEEEeccCCCc
Q 032292           63 ------DNYCNYHER-------LMKLLKVGGIAVYDNTLWGG   91 (143)
Q Consensus        63 ------~~~~~~~~~-------~~~~L~~gG~li~d~~~~~g   91 (143)
                            .++...++.       ....++|+|.+++.  +|.|
T Consensus       148 aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g  187 (232)
T KOG4589|consen  148 ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG  187 (232)
T ss_pred             CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence                  122333333       34788999999984  5665

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=96.98  E-value=0.014  Score=43.06  Aligned_cols=113  Identities=23%  Similarity=0.206  Sum_probs=70.0

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------   46 (143)
                      +|..-..++.|+-..+|..|+|+|+-.|-|++++|..+-.-|+                                     
T Consensus        54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~  133 (237)
T COG3510          54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIA  133 (237)
T ss_pred             CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHH
Confidence            3445556777777789999999999999999999876432221                                     


Q ss_pred             ---c--CCCCceeEEEEcCCcc--chHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHh
Q 032292           47 ---S--ENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL  119 (143)
Q Consensus        47 ---~--~~~~~fD~v~~d~~~~--~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l  119 (143)
                         .  ...-+-=||..|++|+  +.+..++...++|.-|-++++.|..-.+.-. +  ..|.+....-..++++|++.-
T Consensus       134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~--~~p~~~g~gP~~AVe~ylr~~  210 (237)
T COG3510         134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-P--VLPWRFGGGPYEAVEAYLREF  210 (237)
T ss_pred             HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-c--ccchhcCCChHHHHHHHHHhC
Confidence               0  1111122556677664  3455677777999999999888776554321 1  112211111345778776543

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.96  E-value=0.0045  Score=47.73  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             CCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 032292           49 NEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        49 ~~~~fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..+.||+|||.--     ...-...++.+.+.|+|||+|++-
T Consensus       199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence            4567999998742     233356788889999999999874

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.95  E-value=0.018  Score=43.37  Aligned_cols=69  Identities=12%  Similarity=0.041  Sum_probs=48.0

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CC--------------------------------c------------c---CCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DG--------------------------------Q------------S---ENE   50 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~--------------------------------~------------~---~~~   50 (143)
                      +..+||..|||.|.-+.|||..--. .|                                .            +   ...
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~  122 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL  122 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence            4579999999999999999976211 00                                0            0   112


Q ss_pred             CceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 032292           51 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        51 ~~fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ++||+|+-.+.     .....++.+.+.++|+|||.++.-..
T Consensus       123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~  164 (226)
T PRK13256        123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM  164 (226)
T ss_pred             CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            57999885542     22345688899999999998876433

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.84  E-value=0.0051  Score=47.47  Aligned_cols=35  Identities=40%  Similarity=0.641  Sum_probs=28.2

Q ss_pred             CCceeEE----EEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYA----FVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v----~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||.|    |+|.. .+..++++.+.++|||||+.|=-
T Consensus       163 ~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WIN~  201 (270)
T PF07942_consen  163 KGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWINF  201 (270)
T ss_pred             CCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEEec
Confidence            4689998    46663 56788999999999999988743

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=96.81  E-value=0.0022  Score=49.88  Aligned_cols=70  Identities=24%  Similarity=0.362  Sum_probs=47.3

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c--CCCCceeEE
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S--ENEGSFDYA   56 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~--~~~~~fD~v   56 (143)
                      ...+.++||++=|.||..++..+..-.....                                     .  ...++||+|
T Consensus       120 ~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I  199 (286)
T PF10672_consen  120 KYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI  199 (286)
T ss_dssp             HHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred             HHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence            3446799999999999999986654221100                                     0  124689999


Q ss_pred             EEcCCc---------cchHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADK---------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~---------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++|-..         .+|.+.+..+.++|+|||+|++-
T Consensus       200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~  237 (286)
T PF10672_consen  200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC  237 (286)
T ss_dssp             EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999531         35777888899999999998753

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.78  E-value=0.0058  Score=45.87  Aligned_cols=67  Identities=18%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~   60 (143)
                      .+..+||-+|..+|..-..++...+++|.                                     ...-+..|+||.|-
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DV  151 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDV  151 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecC
Confidence            45689999999999999999999886665                                     22346999999997


Q ss_pred             CccchH-HHHHHHHhcccCCeEEEE
Q 032292           61 DKDNYC-NYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        61 ~~~~~~-~~~~~~~~~L~~gG~li~   84 (143)
                      ...+-. -....+...||+||.+++
T Consensus       152 aQp~Qa~I~~~Na~~fLk~gG~~~i  176 (229)
T PF01269_consen  152 AQPDQARIAALNARHFLKPGGHLII  176 (229)
T ss_dssp             SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CChHHHHHHHHHHHhhccCCcEEEE
Confidence            765444 355667789999998875

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.73  E-value=0.014  Score=43.75  Aligned_cols=70  Identities=21%  Similarity=0.383  Sum_probs=51.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~~   61 (143)
                      .+..+||++|-|-|...-.+-++-|. -.                                    ...++.||=|+-|.-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy  178 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY  178 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence            57899999999999988877555332 11                                    245678999999986


Q ss_pred             ccch---HHHHHHHHhcccCCeEEEEeccC
Q 032292           62 KDNY---CNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 ~~~~---~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ...|   .+..+.+.++|||+|++-+-|-+
T Consensus       179 ~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  179 SELYEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            5444   45677888999999999665443

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.69  E-value=0.01  Score=41.12  Aligned_cols=50  Identities=14%  Similarity=0.168  Sum_probs=35.4

Q ss_pred             HHHHHHHHhh----cCCCEEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCc
Q 032292            8 GQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADK   62 (143)
Q Consensus         8 ~~~l~~l~~~----~~~~~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~   62 (143)
                      .+++..+...    .++..|+|+|||.||.+..++..+++     ......++-+|.+.
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~-----~~~~~~v~~iD~~~   63 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCN-----SSPNLRVLGIDCNE   63 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHh-----cCCCCeEEEEECCc
Confidence            3455555444    67889999999999999999996653     12345666677654

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.68  E-value=0.0081  Score=43.86  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=22.5

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE   43 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~   43 (143)
                      +++.++|||||+|+.+..+++...+
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~   67 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGP   67 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCC
Confidence            4899999999999999999998764

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.68  E-value=0.011  Score=43.22  Aligned_cols=77  Identities=17%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             HHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCC-
Q 032292            9 QLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENE-   50 (143)
Q Consensus         9 ~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~-   50 (143)
                      .+...+.. .....++||+=+|+|..++..+.+-...+.                                    +... 
T Consensus        32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~  111 (187)
T COG0742          32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT  111 (187)
T ss_pred             HHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC
Confidence            45555555 367899999999999999987766322111                                    1223 


Q ss_pred             -CceeEEEEcCCcc--chHHHHHHH----HhcccCCeEEEEe
Q 032292           51 -GSFDYAFVDADKD--NYCNYHERL----MKLLKVGGIAVYD   85 (143)
Q Consensus        51 -~~fD~v~~d~~~~--~~~~~~~~~----~~~L~~gG~li~d   85 (143)
                       ++||+||+|-.-.  -+.......    ..+|+|+|.+++.
T Consensus       112 ~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E  153 (187)
T COG0742         112 REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE  153 (187)
T ss_pred             CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence             3599999996432  222222222    2789999999986

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.60  E-value=0.015  Score=46.58  Aligned_cols=85  Identities=22%  Similarity=0.292  Sum_probs=60.4

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------   46 (143)
                      +.....+...++...+..+|||+-++.|-=|..+|..+.+.+.                                     
T Consensus       141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~  220 (355)
T COG0144         141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL  220 (355)
T ss_pred             cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence            3455566666777778899999999999999999999875222                                     


Q ss_pred             c---CCCCceeEEEEcCC---------ccc----------------hHHHHHHHHhcccCCeEEEEeccC
Q 032292           47 S---ENEGSFDYAFVDAD---------KDN----------------YCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        47 ~---~~~~~fD~v~~d~~---------~~~----------------~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +   ...++||.|++|+.         +.+                -.+.++.+.++|||||+|+++..-
T Consensus       221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS  290 (355)
T COG0144         221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS  290 (355)
T ss_pred             cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence            0   11225999999962         000                013566778999999999987543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.56  E-value=0.016  Score=46.18  Aligned_cols=83  Identities=23%  Similarity=0.223  Sum_probs=63.4

Q ss_pred             CcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-----C--------Cc----------------------
Q 032292            2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----D--------GQ----------------------   46 (143)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-----~--------~~----------------------   46 (143)
                      +++|..++.+..|++..+++.|||==||||...+.... ++.     +        ++                      
T Consensus       180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l  258 (347)
T COG1041         180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL  258 (347)
T ss_pred             CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence            47899999999999999999999999999998887543 221     1        00                      


Q ss_pred             cCCCCceeEEEEcCC-------cc-c----hHHHHHHHHhcccCCeEEEEe
Q 032292           47 SENEGSFDYAFVDAD-------KD-N----YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~-------~~-~----~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +..+.++|.|..|-.       +. .    |.+.++.+.+.|++||+++|-
T Consensus       259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            333446999999842       11 1    667888999999999999873

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=96.54  E-value=0.0038  Score=48.74  Aligned_cols=38  Identities=13%  Similarity=-0.053  Sum_probs=28.7

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ++.....+...+...+..+|||||||+|..|..+++..
T Consensus        21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~   58 (294)
T PTZ00338         21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA   58 (294)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC
Confidence            44445555555556677899999999999999998764

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.41  E-value=0.0082  Score=42.50  Aligned_cols=40  Identities=13%  Similarity=0.089  Sum_probs=31.8

Q ss_pred             CCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 032292           48 ENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        48 ~~~~~fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ..+++||+|++...   ..+....++++.++|||||.+++.+.
T Consensus        40 ~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~   82 (160)
T PLN02232         40 FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDF   82 (160)
T ss_pred             CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            45678999998653   24567889999999999999987654

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.37  E-value=0.0088  Score=44.20  Aligned_cols=71  Identities=15%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCcee
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFD   54 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD   54 (143)
                      .+.+...|+|+=-|.||+|..++..+.+.|+                                         .......|
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d  124 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD  124 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence            3456789999999999999999999876554                                         12345566


Q ss_pred             EEEEcCC---------ccch-HHHHHHHHhcccCCeEEEEec
Q 032292           55 YAFVDAD---------KDNY-CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        55 ~v~~d~~---------~~~~-~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +++....         +..+ ...+..+.+.|||||++++.+
T Consensus       125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            6664211         1122 346778889999999887643

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.34  E-value=0.013  Score=44.41  Aligned_cols=67  Identities=24%  Similarity=0.160  Sum_probs=51.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC------Cc--------------------------cCCCCceeEEEEcCCccch
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED------GQ--------------------------SENEGSFDYAFVDADKDNY   65 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~------~~--------------------------~~~~~~fD~v~~d~~~~~~   65 (143)
                      .+.+.+||||+.||-.|-.+.+.-...      |.                          ....+..|++++|...-..
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFISL  157 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFISL  157 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhhH
Confidence            367899999999999999988762210      11                          1123478999999887777


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 032292           66 CNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~   84 (143)
                      ...+..+..++++++-++.
T Consensus       158 ~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         158 KLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             HHHHHHHHHhcCCCceEEE
Confidence            7888999999999998764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.33  E-value=0.017  Score=44.32  Aligned_cols=34  Identities=12%  Similarity=-0.016  Sum_probs=26.3

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE   43 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~   43 (143)
                      -+-..+...+..+|||||+|.|..|..|++....
T Consensus        21 kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~   54 (259)
T COG0030          21 KIVEAANISPGDNVLEIGPGLGALTEPLLERAAR   54 (259)
T ss_pred             HHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCe
Confidence            3344444556789999999999999999988653

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.31  E-value=0.026  Score=44.55  Aligned_cols=34  Identities=35%  Similarity=0.707  Sum_probs=27.4

Q ss_pred             CCceeEE----EEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           50 EGSFDYA----FVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        50 ~~~fD~v----~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .+.||.|    |||.. .+..++++.+...|+|||+.+=
T Consensus       257 ~~~~d~VvTcfFIDTa-~NileYi~tI~~iLk~GGvWiN  294 (369)
T KOG2798|consen  257 AGSYDVVVTCFFIDTA-HNILEYIDTIYKILKPGGVWIN  294 (369)
T ss_pred             CCccceEEEEEEeech-HHHHHHHHHHHHhccCCcEEEe
Confidence            3579988    46664 4678899999999999999984

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.30  E-value=0.011  Score=46.89  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             CceeEEEEcCCc-------cchHHHHHHHHhcccCCeEEEE
Q 032292           51 GSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        51 ~~fD~v~~d~~~-------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .+||+|-+--..       ......++.+..+|+|||++|.
T Consensus       144 ~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg  184 (331)
T PF03291_consen  144 RKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG  184 (331)
T ss_dssp             S-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            589999765432       1234578889999999999986

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.28  E-value=0.023  Score=44.24  Aligned_cols=36  Identities=28%  Similarity=0.364  Sum_probs=27.5

Q ss_pred             CCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+||+..-     .......++.+.+.|+|||+|++-
T Consensus       221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            468999998542     223456888999999999999764

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.20  E-value=0.016  Score=46.66  Aligned_cols=73  Identities=15%  Similarity=0.224  Sum_probs=54.3

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCC--Cc---------------------------------cCCCCceeEEEE-c
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPED--GQ---------------------------------SENEGSFDYAFV-D   59 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~--~~---------------------------------~~~~~~fD~v~~-d   59 (143)
                      ...++..++++|||.|-.+..++..-...  |.                                 +..+..||.+.. +
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld  186 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE  186 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence            34466789999999999999988664321  11                                 466788999854 4


Q ss_pred             C--CccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           60 A--DKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        60 ~--~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      .  ...+....++++.+.++|||+.+..+..
T Consensus       187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             ecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            3  3456778899999999999999976543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.11  E-value=0.0036  Score=47.47  Aligned_cols=66  Identities=17%  Similarity=0.052  Sum_probs=48.3

Q ss_pred             CCEEEEEeccccHHHHHHHhhC-CC---------------CCc----------------cCCCCceeEEEEcC---Cccc
Q 032292           20 AKKTIEIGVFTGYSLLLTALTI-PE---------------DGQ----------------SENEGSFDYAFVDA---DKDN   64 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~-~~---------------~~~----------------~~~~~~fD~v~~d~---~~~~   64 (143)
                      -..++||||+-|+.+..+.... ..               ++.                ++.++++|+|+..-   |..+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd  152 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND  152 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence            4688999999999988865432 11               000                45578999998764   3345


Q ss_pred             hHHHHHHHHhcccCCeEEEEe
Q 032292           65 YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .+..+.++...|||.|.++..
T Consensus       153 LPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  153 LPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             CchHHHHHHHhcCCCccchhH
Confidence            677888999999999999863

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.01  E-value=0.025  Score=44.86  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=22.8

Q ss_pred             CceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEE
Q 032292           51 GSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        51 ~~fD~v~~d~~-------~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .+||+|-+--.       ......++..+.++|+|||++|-
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence            33888854311       11223467888999999999985

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.94  E-value=0.11  Score=43.49  Aligned_cols=38  Identities=13%  Similarity=-0.105  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHHhhc-------CCCEEEEEeccccHHHHHHHhhCC
Q 032292            5 TIHGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         5 ~~~~~~l~~l~~~~-------~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +...++|..++...       ...+|||.+||+|...+.+++.++
T Consensus        10 ~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~   54 (524)
T TIGR02987        10 PDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNE   54 (524)
T ss_pred             HHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHH
Confidence            44555665544221       346999999999999988877653

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK04148 hypothetical protein; Provisional

Probab=95.91  E-value=0.014  Score=40.43  Aligned_cols=64  Identities=22%  Similarity=0.226  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccH-HHHHHHhhCCCCCccCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~-~t~~la~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      -+++|.......+..+|||||||+|. .+..|++.           .+|++.+|.+..    ..+.+.+.   +-..+.+
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-----------G~~ViaIDi~~~----aV~~a~~~---~~~~v~d   65 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-----------GFDVIVIDINEK----AVEKAKKL---GLNAFVD   65 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-----------CCEEEEEECCHH----HHHHHHHh---CCeEEEC
Confidence            34555554444456899999999997 66666632           268999887643    23333221   3345666


Q ss_pred             ccC
Q 032292           86 NTL   88 (143)
Q Consensus        86 ~~~   88 (143)
                      |++
T Consensus        66 Dlf   68 (134)
T PRK04148         66 DLF   68 (134)
T ss_pred             cCC
Confidence            665

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.87  E-value=0.034  Score=43.15  Aligned_cols=80  Identities=26%  Similarity=0.377  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c-C
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S-E   48 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~-~   48 (143)
                      ...+...++...+..+|||+.++.|.=|..+|..+...+.                                     + .
T Consensus        73 sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~  152 (283)
T PF01189_consen   73 SSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK  152 (283)
T ss_dssp             HHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH
T ss_pred             ccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc
Confidence            3445555556667789999999999999999999885454                                     1 1


Q ss_pred             CCCceeEEEEcCC---------ccc--h--------------HHHHHHHHhcc----cCCeEEEEec
Q 032292           49 NEGSFDYAFVDAD---------KDN--Y--------------CNYHERLMKLL----KVGGIAVYDN   86 (143)
Q Consensus        49 ~~~~fD~v~~d~~---------~~~--~--------------~~~~~~~~~~L----~~gG~li~d~   86 (143)
                      ....||.|++|+.         +.+  +              .+.++.+.+.+    +|||++++..
T Consensus       153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            2346999999962         000  0              12566778999    9999999863

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=95.87  E-value=0.022  Score=44.31  Aligned_cols=37  Identities=16%  Similarity=0.027  Sum_probs=27.9

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +....+++..++...+..+|+|-.||+|...+.+.+.
T Consensus        31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~   67 (311)
T PF02384_consen   31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEY   67 (311)
T ss_dssp             -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHh
Confidence            3456688888887777789999999999988877664

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=95.84  E-value=0.093  Score=41.03  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=55.6

Q ss_pred             HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC--CCc---------------------------------------cCC
Q 032292           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE--DGQ---------------------------------------SEN   49 (143)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~--~~~---------------------------------------~~~   49 (143)
                      +..|.....|-+||||.||.|..-+-.....+.  ...                                       ...
T Consensus       127 i~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l  206 (311)
T PF12147_consen  127 IARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL  206 (311)
T ss_pred             HHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc
Confidence            334444457899999999999887777766664  111                                       122


Q ss_pred             CCceeEEEEcCCccc------hHHHHHHHHhcccCCeEEEEeccCCCcc
Q 032292           50 EGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVYDNTLWGGT   92 (143)
Q Consensus        50 ~~~fD~v~~d~~~~~------~~~~~~~~~~~L~~gG~li~d~~~~~g~   92 (143)
                      ....+++++.+-.+-      ....+..+.+.+.|||++|.-+-.|+-.
T Consensus       207 ~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  207 DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence            345688887764321      2235777789999999999987777643

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=95.77  E-value=0.031  Score=41.42  Aligned_cols=72  Identities=19%  Similarity=0.155  Sum_probs=39.1

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCC---Cc------------------------------------cCCC----
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPED---GQ------------------------------------SENE----   50 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~---~~------------------------------------~~~~----   50 (143)
                      .+.+.+....+|||||.|...+..|...+-.   |.                                    ...+    
T Consensus        37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~  116 (205)
T PF08123_consen   37 ELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV  116 (205)
T ss_dssp             HTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred             HhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence            3455567889999999999888777554421   11                                    1111    


Q ss_pred             ----CceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEe
Q 032292           51 ----GSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        51 ----~~fD~v~~d~~~--~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                          ..-|+||++...  ......+.+....||+|..||.-
T Consensus       117 ~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  117 KDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             HHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             hhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEEC
Confidence                234888887542  23334566677889999988764

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=0.0096  Score=42.79  Aligned_cols=66  Identities=23%  Similarity=0.358  Sum_probs=45.9

Q ss_pred             CCCEEEEEecc-ccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEEE
Q 032292           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        19 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v~   57 (143)
                      .+++|||+|.| +|.+++.+|...++...                                        ......||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            56899999987 57788888877765322                                        12346899998


Q ss_pred             E-cCCc-cc-hHHHHHHHHhcccCCeEEEE
Q 032292           58 V-DADK-DN-YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        58 ~-d~~~-~~-~~~~~~~~~~~L~~gG~li~   84 (143)
                      + |+-. .+ .....+.+..+|+|.|.-++
T Consensus       109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~  138 (201)
T KOG3201|consen  109 AADCLFFDEHHESLVDTIKSLLRPSGRALL  138 (201)
T ss_pred             eccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence            6 4422 23 34567778899999997654

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=95.48  E-value=0.069  Score=38.59  Aligned_cols=82  Identities=16%  Similarity=0.102  Sum_probs=54.4

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCC------------c------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG------------Q------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~------------~------------------------   46 (143)
                      +.|.-+..|..++...+...+||-=||+|...+..|.......            .                        
T Consensus        12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~   91 (179)
T PF01170_consen   12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID   91 (179)
T ss_dssp             S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence            5677888888999888889999999999999877654432211            1                        


Q ss_pred             ---------cCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEE
Q 032292           47 ---------SENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 ---------~~~~~~fD~v~~d~~~-----------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                               +...+++|.|+.|-.-           .-|...++.+.+++++..++++
T Consensus        92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~  149 (179)
T PF01170_consen   92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT  149 (179)
T ss_dssp             EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred             EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence                     2245789999998521           1255667788899999666655

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.27  E-value=0.024  Score=45.49  Aligned_cols=67  Identities=22%  Similarity=0.259  Sum_probs=43.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC--CCc------------------------------------c-CCCCceeEEEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE--DGQ------------------------------------S-ENEGSFDYAFV   58 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~--~~~------------------------------------~-~~~~~fD~v~~   58 (143)
                      ..|++|||+|.|.|.....+-..+|.  ++.                                    + ...+.|+++++
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~  191 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV  191 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence            36899999999999776655454543  111                                    1 22456777765


Q ss_pred             cC------CccchHHHHHHHHhcccCCeEEEE
Q 032292           59 DA------DKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        59 d~------~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ..      ........++.++.+++|||.||+
T Consensus       192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi  223 (484)
T COG5459         192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVI  223 (484)
T ss_pred             hhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence            32      111223478889999999999876

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=95.26  E-value=0.05  Score=43.57  Aligned_cols=65  Identities=15%  Similarity=0.104  Sum_probs=42.6

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCC-----c----------------------------cCCCCceeEEEEcCCc---
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDG-----Q----------------------------SENEGSFDYAFVDADK---   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~-----~----------------------------~~~~~~fD~v~~d~~~---   62 (143)
                      +.+.|||+|||+|..+...|.+-....     .                            -.++++.|+|++.--.   
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL  256 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML  256 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence            678999999999999998777643210     0                            1356788988875311   


Q ss_pred             --cchHHHHHHHHhcccCCeEEE
Q 032292           63 --DNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        63 --~~~~~~~~~~~~~L~~gG~li   83 (143)
                        +..++.+-.+.+.|+|.|-..
T Consensus       257 ~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  257 VNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             hhHHHHHHHHHHHhhcCCCCccc
Confidence              122232334459999999764

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.24  E-value=0.064  Score=42.88  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=43.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-----CCc-------------------c-C-CCCceeEEEEcCCccchHHHHHH
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-----DGQ-------------------S-E-NEGSFDYAFVDADKDNYCNYHER   71 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-----~~~-------------------~-~-~~~~fD~v~~d~~~~~~~~~~~~   71 (143)
                      .+..++|||||++|-+|-.+++.-..     .+.                   . . ..+++|++++|.. .......+.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-e~P~rva~l  288 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-EKPARVAEL  288 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-cCHHHHHHH
Confidence            46789999999999999999876321     000                   1 1 1668999999975 334566677


Q ss_pred             HHhcccCC
Q 032292           72 LMKLLKVG   79 (143)
Q Consensus        72 ~~~~L~~g   79 (143)
                      +.++|..|
T Consensus       289 m~~Wl~~g  296 (357)
T PRK11760        289 MAQWLVNG  296 (357)
T ss_pred             HHHHHhcC
Confidence            77888776

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.19  E-value=0.042  Score=40.31  Aligned_cols=37  Identities=19%  Similarity=0.172  Sum_probs=26.3

Q ss_pred             ChHHHHHHHHHHhhc---CCCEEEEEeccccHHHHHHHhh
Q 032292            4 LTIHGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~---~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      .+..+..+...+.+.   ..++|+|+|||||..++..+..
T Consensus        27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l   66 (198)
T COG2263          27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL   66 (198)
T ss_pred             ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc
Confidence            345555555566543   4678999999999999976544

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.09  E-value=0.072  Score=40.66  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             CCCEEEEEeccccHHHHHHHhhC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ++.+|||+|+|+|..++.+|...
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~  108 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL  108 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh
Confidence            46789999999999999888754

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.81  E-value=0.13  Score=38.27  Aligned_cols=67  Identities=18%  Similarity=0.279  Sum_probs=51.3

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d   59 (143)
                      +.+..+||=+|..+|.+...++...+ +|.                                     ...-+..|+||.|
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence            34678999999999999999999888 453                                     1234679999999


Q ss_pred             CCccchHH-HHHHHHhcccCCeEEEE
Q 032292           60 ADKDNYCN-YHERLMKLLKVGGIAVY   84 (143)
Q Consensus        60 ~~~~~~~~-~~~~~~~~L~~gG~li~   84 (143)
                      -...+-.+ ....+...|++||.+++
T Consensus       153 VAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         153 VAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             cCCchHHHHHHHHHHHhcccCCeEEE
Confidence            87665444 45567789999996554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=94.81  E-value=0.031  Score=42.70  Aligned_cols=38  Identities=16%  Similarity=-0.047  Sum_probs=31.4

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ++...+-+...+...+...|||||.|+|..|..|++..
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~   52 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG   52 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc
Confidence            45566666666666788999999999999999999886

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=94.76  E-value=0.12  Score=38.28  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      .+.++|||+|+|+|..++.-+++.
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aG  101 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAG  101 (218)
T ss_pred             cccceeeecccccChHHHHHHHhh
Confidence            467999999999999999877663

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=94.73  E-value=0.067  Score=39.54  Aligned_cols=65  Identities=20%  Similarity=0.220  Sum_probs=42.4

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cC-CCCceeEEEEcC
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SE-NEGSFDYAFVDA   60 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~-~~~~fD~v~~d~   60 (143)
                      ..+...|+|.-||.|+.++.+|+..+. .+                                   .. ..+.||-|+++-
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l  177 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL  177 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence            346789999999999999999985332 11                                   11 267899998876


Q ss_pred             CccchHHHHHHHHhcccCCeEEE
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li   83 (143)
                      .... ..+++.+.+++++||++-
T Consensus       178 p~~~-~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  178 PESS-LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             TSSG-GGGHHHHHHHEEEEEEEE
T ss_pred             hHHH-HHHHHHHHHHhcCCcEEE
Confidence            5432 357778889999999873

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PHA01634 hypothetical protein

Probab=94.42  E-value=0.075  Score=36.80  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=33.5

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC-------Cc------------------------cCCCCceeEEEEcCCc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED-------GQ------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~-------~~------------------------~~~~~~fD~v~~d~~~   62 (143)
                      +.++|+|||.+.|-|+++++..-...       -+                        +..-++||...+|+..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~iDCeG  102 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVMDCEG  102 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEEEccc
Confidence            67999999999999999998653211       00                        3345899999999864

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=94.33  E-value=0.35  Score=37.31  Aligned_cols=34  Identities=15%  Similarity=0.285  Sum_probs=23.7

Q ss_pred             HHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCC
Q 032292            9 QLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         9 ~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++|..+...   .+|++|||+|||+|..+......++
T Consensus        20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~   56 (274)
T PF09243_consen   20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP   56 (274)
T ss_pred             HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc
Confidence            444445432   4789999999999987666655555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PLN02672 methionine S-methyltransferase

Probab=94.08  E-value=0.088  Score=47.84  Aligned_cols=38  Identities=18%  Similarity=0.066  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHhhc----CCCEEEEEeccccHHHHHHHhhCC
Q 032292            5 TIHGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         5 ~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      |++-.++..|....    ++++|||+|||+|..++.+++..+
T Consensus       100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~  141 (1082)
T PLN02672        100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL  141 (1082)
T ss_pred             hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC
Confidence            34445555533221    246899999999999999998865

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.08  E-value=0.16  Score=39.44  Aligned_cols=67  Identities=16%  Similarity=0.101  Sum_probs=37.5

Q ss_pred             CCCEEEEEeccc-cHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEc
Q 032292           19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        19 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d   59 (143)
                      .|++|+=||||. -.++++|++....+..                                      ...-..||.||+.
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            467999999995 4677778765332211                                      1123589999998


Q ss_pred             CCcc----chHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKD----NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~----~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +-..    .-.+.++.+.+.++||..+++-
T Consensus       200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  200 ALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            7554    6678999999999999999875

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=94.07  E-value=0.042  Score=37.52  Aligned_cols=21  Identities=24%  Similarity=0.196  Sum_probs=18.6

Q ss_pred             EEEEEeccccHHHHHHHhhCC
Q 032292           22 KTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        22 ~vLeiG~g~G~~t~~la~~~~   42 (143)
                      .++|||||.|+.+.++++..+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~   21 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA   21 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC
Confidence            479999999999999998765

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.04  E-value=0.31  Score=37.41  Aligned_cols=68  Identities=19%  Similarity=0.210  Sum_probs=50.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~   60 (143)
                      .+..+||=+|.++|++-...+..+.+++.                                     +.+-+-.|.||.|-
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv  234 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV  234 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccC
Confidence            46789999999999998888888776543                                     12235789999998


Q ss_pred             CccchHHHH-HHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYH-ERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~-~~~~~~L~~gG~li~d   85 (143)
                      ...+....+ -.+.-.|++||-+++.
T Consensus       235 aqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  235 AQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             CCchhhhhhhhhhhhhhccCCeEEEE
Confidence            766544432 3455799999988764

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=93.81  E-value=0.14  Score=41.02  Aligned_cols=23  Identities=17%  Similarity=0.023  Sum_probs=20.0

Q ss_pred             CCEEEEEeccccHHHHHHHhhCC
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +.+|||++||+|..++.+++...
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~  220 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFR  220 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCC
Confidence            45799999999999999998753

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=93.75  E-value=0.1  Score=40.57  Aligned_cols=38  Identities=13%  Similarity=-0.025  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      |....-+..-+...++..|||||-|||..|..|.++..
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k   81 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK   81 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC
Confidence            34444455555667889999999999999999988743

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=93.64  E-value=0.38  Score=37.80  Aligned_cols=110  Identities=17%  Similarity=0.188  Sum_probs=72.4

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------------cCCCCce
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------------SENEGSF   53 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------------~~~~~~f   53 (143)
                      +..+|++||-||-|-|-.....+++ +.-+.                                          ....++|
T Consensus       118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~  196 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF  196 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence            4568999999999988766655544 11000                                          2337899


Q ss_pred             eEEEEcCCccc------h-HHHHHHHHhcccCCeEEEEe-ccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCe
Q 032292           54 DYAFVDADKDN------Y-CNYHERLMKLLKVGGIAVYD-NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV  125 (143)
Q Consensus        54 D~v~~d~~~~~------~-~~~~~~~~~~L~~gG~li~d-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~  125 (143)
                      |+|..|.+...      | ..+++.+.+.||++|+++.. +..|-..              .....+++|-..+...-.+
T Consensus       197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~--------------~~i~e~r~~~~~~f~~t~y  262 (337)
T KOG1562|consen  197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHL--------------DYIKEGRSFCYVIFDLTAY  262 (337)
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHH--------------HHHHHHHHhHHHhcCccce
Confidence            99999976432      2 34788889999999999764 3333210              0445678888777766667


Q ss_pred             eEEEeecC----CeeEEEE
Q 032292          126 QLSHVALG----DGITICR  140 (143)
Q Consensus       126 ~~~~lp~~----~Gl~~~~  140 (143)
                      -.+..|+-    -|+.+|-
T Consensus       263 a~ttvPTypsg~igf~l~s  281 (337)
T KOG1562|consen  263 AITTVPTYPSGRIGFMLCS  281 (337)
T ss_pred             eeecCCCCccceEEEEEec
Confidence            77777742    4555554

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=93.54  E-value=0.44  Score=38.05  Aligned_cols=70  Identities=17%  Similarity=0.140  Sum_probs=46.8

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCC-CCc-----------cCC--------------CCceeEEEEc---CCc--cchHHH
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------SEN--------------EGSFDYAFVD---ADK--DNYCNY   68 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------~~~--------------~~~fD~v~~d---~~~--~~~~~~   68 (143)
                      -...+|+|.|.|..+-.+...+|. ++.           +..              -.+-|+||+-   ++.  .+-.++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvki  257 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKI  257 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHH
Confidence            478899999999999998887663 111           111              1234577653   111  234578


Q ss_pred             HHHHHhcccCCeEEEE-eccCC
Q 032292           69 HERLMKLLKVGGIAVY-DNTLW   89 (143)
Q Consensus        69 ~~~~~~~L~~gG~li~-d~~~~   89 (143)
                      +++++.-|+|||.|++ +++.-
T Consensus       258 LknC~~sL~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  258 LKNCKKSLPPGGKIIVVENVTP  279 (342)
T ss_pred             HHHHHHhCCCCCEEEEEeccCC
Confidence            9999999999987755 55454

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=93.41  E-value=0.13  Score=40.81  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=19.0

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ...++||||||+|.....++...+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~  137 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY  137 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC
Confidence            357999999999988777776543

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=93.23  E-value=0.21  Score=40.89  Aligned_cols=69  Identities=28%  Similarity=0.427  Sum_probs=49.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c--CCCCceeEEEEc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S--ENEGSFDYAFVD   59 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~--~~~~~fD~v~~d   59 (143)
                      ++..+|||.-+..|-=|.++|..+...|.                                    +  ...++||-|++|
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLLD  319 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLLD  319 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeeec
Confidence            45689999999999999999988876443                                    0  112379999999


Q ss_pred             CC--------cc-------------ch----HHHHHHHHhcccCCeEEEEec
Q 032292           60 AD--------KD-------------NY----CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        60 ~~--------~~-------------~~----~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +.        +.             .|    .+.+..+..++++||+||...
T Consensus       320 APCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  320 APCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             CCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            62        10             11    124566779999999999863

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=93.05  E-value=0.17  Score=39.65  Aligned_cols=37  Identities=8%  Similarity=-0.023  Sum_probs=27.9

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ   46 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~   46 (143)
                      +++..|. ..+...+||.+||.|.-|..+++.+++.++
T Consensus        10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~   46 (296)
T PRK00050         10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR   46 (296)
T ss_pred             HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE
Confidence            4444443 235579999999999999999999875454

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=92.73  E-value=0.043  Score=41.13  Aligned_cols=70  Identities=16%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC------CCc------------------cCCCCceeEEEEcC---CccchHHHHHH
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE------DGQ------------------SENEGSFDYAFVDA---DKDNYCNYHER   71 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~------~~~------------------~~~~~~fD~v~~d~---~~~~~~~~~~~   71 (143)
                      .|.++||+|.|-|-.|..|+..+.+      +.+                  ...+-+||+|.+-.   ...+....++.
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~D  191 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLED  191 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHHH
Confidence            4689999999999999988766542      000                  12345688886421   11244567888


Q ss_pred             HHhcccC-CeEEEEeccC
Q 032292           72 LMKLLKV-GGIAVYDNTL   88 (143)
Q Consensus        72 ~~~~L~~-gG~li~d~~~   88 (143)
                      +...|+| +|.+|+.-++
T Consensus       192 i~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  192 IHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             HHHHhccCCCcEEEEEEe
Confidence            8999999 8887776443

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=92.65  E-value=0.19  Score=31.40  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=17.2

Q ss_pred             hcCCCEEEEEeccccH-HHHHHHhhCC
Q 032292           17 LVNAKKTIEIGVFTGY-SLLLTALTIP   42 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~-~t~~la~~~~   42 (143)
                      ...|++||-||+.+|| .+..++.++.
T Consensus        36 ~~GpK~VLViGaStGyGLAsRIa~aFg   62 (78)
T PF12242_consen   36 INGPKKVLVIGASTGYGLASRIAAAFG   62 (78)
T ss_dssp             -TS-SEEEEES-SSHHHHHHHHHHHHC
T ss_pred             CCCCceEEEEecCCcccHHHHHHHHhc
Confidence            3568999999999998 4444666554

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=92.65  E-value=0.33  Score=41.83  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=26.3

Q ss_pred             CceeEEEEcCCcc--c--h--HHHHHHHHhcccCCeEEEE
Q 032292           51 GSFDYAFVDADKD--N--Y--CNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        51 ~~fD~v~~d~~~~--~--~--~~~~~~~~~~L~~gG~li~   84 (143)
                      ..||.+|.|+-..  +  .  .++|..+.+++++||+++-
T Consensus       165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence            5699999997321  1  1  4578999999999999984

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=92.54  E-value=0.25  Score=39.66  Aligned_cols=22  Identities=18%  Similarity=0.033  Sum_probs=19.6

Q ss_pred             CEEEEEeccccHHHHHHHhhCC
Q 032292           21 KKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      .++||++||+|..++.+++...
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~  229 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR  229 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC
Confidence            5899999999999999998754

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.07  E-value=0.14  Score=38.87  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC----CCc-------------------------------------cCCCCceeEEE
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE----DGQ-------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~----~~~-------------------------------------~~~~~~fD~v~   57 (143)
                      ..++++|+-...|.|+-.+++.+-.    ++.                                     .+..++-|+|+
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVv  120 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVV  120 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEE
Confidence            4689999999999999999988643    111                                     23457899999


Q ss_pred             EcCCc-----cc---hH------HHHHHHHhcccCCeEEEE
Q 032292           58 VDADK-----DN---YC------NYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        58 ~d~~~-----~~---~~------~~~~~~~~~L~~gG~li~   84 (143)
                      +|+..     ++   |.      .++......|+|||.+|.
T Consensus       121 cDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa  161 (294)
T KOG1099|consen  121 CDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA  161 (294)
T ss_pred             eCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence            99853     22   32      234444589999999986

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=91.86  E-value=0.88  Score=36.03  Aligned_cols=24  Identities=8%  Similarity=0.015  Sum_probs=19.6

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +...++|+|||.|.=+..|.+++.
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~   99 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALE   99 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH
Confidence            455899999999998888777764

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=91.82  E-value=0.2  Score=38.47  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=30.1

Q ss_pred             ceeEEEEcC-------CccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           52 SFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        52 ~fD~v~~d~-------~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +||.|++..       +...|..+++.+.++|||||.||+-.++
T Consensus       158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence            599998643       4467889999999999999999886554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.54  E-value=0.16  Score=34.05  Aligned_cols=39  Identities=21%  Similarity=0.500  Sum_probs=26.1

Q ss_pred             ceeEEEEcCCc---------cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           52 SFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        52 ~fD~v~~d~~~---------~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      +||+|++-.-.         ......|+.+...|+|||++|+.-=-|.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~   48 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWK   48 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcH
Confidence            48999875421         1234589999999999999998744443

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=91.48  E-value=0.92  Score=36.92  Aligned_cols=67  Identities=22%  Similarity=0.288  Sum_probs=48.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------------cCCCCce
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------------SENEGSF   53 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------------~~~~~~f   53 (143)
                      ....+||-+|-|-|.....+.+ .|...+                                            ....+.|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            4678999999999999988865 342111                                            2345789


Q ss_pred             eEEEEcCCccc-------h-HHHHHHHHhcccCCeEEEEe
Q 032292           54 DYAFVDADKDN-------Y-CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        54 D~v~~d~~~~~-------~-~~~~~~~~~~L~~gG~li~d   85 (143)
                      |+|++|-...+       | .+++..+.++|+++|+++++
T Consensus       367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ  406 (508)
T COG4262         367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ  406 (508)
T ss_pred             cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence            99999863221       2 24566777999999999886

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=91.36  E-value=0.58  Score=35.96  Aligned_cols=37  Identities=19%  Similarity=0.112  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCC
Q 032292            7 HGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPE   43 (143)
Q Consensus         7 ~~~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~   43 (143)
                      +..++..+...   .+...++|.|||.|..+.|++..++.
T Consensus         3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~   42 (259)
T PF05206_consen    3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQE   42 (259)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhh
Confidence            45566666654   35678999999999999999999853

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=91.08  E-value=0.25  Score=38.45  Aligned_cols=76  Identities=22%  Similarity=0.225  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHH----------HHhhCCC-----CC--c--------cCCCCceeEEEEcC
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLL----------TALTIPE-----DG--Q--------SENEGSFDYAFVDA   60 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~----------la~~~~~-----~~--~--------~~~~~~fD~v~~d~   60 (143)
                      .+.+|+..+.   ....++|+|||.|-.+..          +...+-.     ++  .        +..+.+||.+..-+
T Consensus        35 ~v~qfl~~~~---~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsia  111 (293)
T KOG1331|consen   35 MVRQFLDSQP---TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIA  111 (293)
T ss_pred             HHHHHHhccC---CcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhh
Confidence            4445555443   367889999999843321          0000000     11  0        45578899987655


Q ss_pred             Cccc------hHHHHHHHHhcccCCeEEEE
Q 032292           61 DKDN------YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        61 ~~~~------~~~~~~~~~~~L~~gG~li~   84 (143)
                      ..++      -..+++++.+.|+|||-..+
T Consensus       112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  112 VIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            3222      24578999999999997654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.81  E-value=1.5  Score=34.88  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=46.7

Q ss_pred             CCCEEEEEeccc-cHHHHHHHhhCCCCCc-----------------------cC-C------------CCceeEEEEcCC
Q 032292           19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQ-----------------------SE-N------------EGSFDYAFVDAD   61 (143)
Q Consensus        19 ~~~~vLeiG~g~-G~~t~~la~~~~~~~~-----------------------~~-~------------~~~fD~v~~d~~   61 (143)
                      +..+|+-+|||+ |..++.+|+..+....                       .. .            ...+|++|-...
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            445899999996 8888888888764211                       00 0            125899886544


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEecc
Q 032292           62 KDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        62 ~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                         ....++.+.+.+++||.+++-.+
T Consensus       248 ---~~~~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         248 ---SPPALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             ---CHHHHHHHHHHhcCCCEEEEEec
Confidence               35578899999999999987543

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=89.28  E-value=0.47  Score=33.15  Aligned_cols=67  Identities=25%  Similarity=0.341  Sum_probs=41.3

Q ss_pred             CceeEEEEcC------Ccc------chHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 032292           51 GSFDYAFVDA------DKD------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  118 (143)
Q Consensus        51 ~~fD~v~~d~------~~~------~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~  118 (143)
                      +++|+++.+-      ++.      .-..+++.++++|++||++++  +.|.|.-...+          ...++.+|...
T Consensus        45 ~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~i--v~Y~GH~gG~e----------E~~av~~~~~~  112 (140)
T PF06962_consen   45 GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITI--VVYPGHPGGKE----------ESEAVEEFLAS  112 (140)
T ss_dssp             --EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEE--EE--STCHHHH----------HHHHHHHHHHT
T ss_pred             CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEE--EEeCCCCCCHH----------HHHHHHHHHHh
Confidence            4899998752      331      224578899999999999988  67776422110          45678888888


Q ss_pred             hhcCCCeeEEEe
Q 032292          119 LADDPRVQLSHV  130 (143)
Q Consensus       119 l~~~~~~~~~~l  130 (143)
                      |. ...|.+...
T Consensus       113 L~-~~~~~V~~~  123 (140)
T PF06962_consen  113 LD-QKEFNVLKY  123 (140)
T ss_dssp             S--TTTEEEEEE
T ss_pred             CC-cceEEEEEE
Confidence            74 335666544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=88.99  E-value=0.32  Score=40.62  Aligned_cols=75  Identities=21%  Similarity=0.192  Sum_probs=56.7

Q ss_pred             HHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCC
Q 032292           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENE   50 (143)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~   50 (143)
                      ..+.+..++-+|||.=+++|.-++..|+.++.-..                                         +...
T Consensus       102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~  181 (525)
T KOG1253|consen  102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVA  181 (525)
T ss_pred             chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccc
Confidence            34455567889999999999999999998874111                                         2335


Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ..||+|-+|--. ....+++.+.+.++.||++.+--+
T Consensus       182 ~~FDvIDLDPyG-s~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  182 KFFDVIDLDPYG-SPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             cccceEecCCCC-CccHHHHHHHHHhhcCCEEEEEec
Confidence            789999998642 345678889999999999987533

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=88.72  E-value=0.3  Score=36.52  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=20.8

Q ss_pred             CEEEEEeccccHHHHHHHhhCCCC
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPED   44 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~~   44 (143)
                      -.+.|||||.|-..+.++..+|+.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdt   85 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDT   85 (249)
T ss_pred             ceEEeeccCccchhhhccccCccc
Confidence            457999999999999999888863

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=86.97  E-value=0.96  Score=29.21  Aligned_cols=37  Identities=22%  Similarity=0.166  Sum_probs=25.3

Q ss_pred             CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .+...||++++|+...--++++-.+...++-||++++
T Consensus         7 ~LG~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllil   43 (92)
T PF08351_consen    7 LLGQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLIL   43 (92)
T ss_dssp             TTT--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEE
T ss_pred             hhCCccCEEEEEccCCCCHHHHHHHhcceecCeEEEE
Confidence            3456899999999877678889999999999999986

; PDB: 2ZPA_B.

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=86.80  E-value=4.6  Score=28.67  Aligned_cols=81  Identities=16%  Similarity=0.180  Sum_probs=40.9

Q ss_pred             HHHHHHHhhc--CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------c---CCCCcee
Q 032292            9 QLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------S---ENEGSFD   54 (143)
Q Consensus         9 ~~l~~l~~~~--~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~---~~~~~fD   54 (143)
                      ..|...+...  -+.-|||+|-|.|-.=-.|-+.+|+.-.                             +   ....+.-
T Consensus        16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~   95 (160)
T PF12692_consen   16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAA   95 (160)
T ss_dssp             HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EE
T ss_pred             HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceE
Confidence            3444444433  3578999999999988889888875211                             0   1233445


Q ss_pred             EEEEcCCccchH------HH-HHHHHhcccCCeEEEEeccCC
Q 032292           55 YAFVDADKDNYC------NY-HERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        55 ~v~~d~~~~~~~------~~-~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ++..|-...+..      .+ -..+.++|++||+++.+.-+.
T Consensus        96 laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen   96 LAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             EEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            666664322211      12 234569999999999876654

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=86.51  E-value=4.1  Score=33.68  Aligned_cols=81  Identities=14%  Similarity=0.056  Sum_probs=49.3

Q ss_pred             cChHHHHHHHHHHh----hcCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------------
Q 032292            3 LLTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------------   46 (143)
                      ..+...+-|...+.    ..+..+++|+=||.|..++++|+.... .|.                               
T Consensus       273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~  352 (432)
T COG2265         273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE  352 (432)
T ss_pred             cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence            44455544444442    235679999999999999999966542 000                               


Q ss_pred             --cC--CCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEE
Q 032292           47 --SE--NEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 --~~--~~~~fD~v~~d~~~~~~~-~~~~~~~~~L~~gG~li~   84 (143)
                        ..  ....+|.|++|-.-.--. ..++. +..++|..++.+
T Consensus       353 ~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~-l~~~~p~~IvYV  394 (432)
T COG2265         353 FTPAWWEGYKPDVVVVDPPRAGADREVLKQ-LAKLKPKRIVYV  394 (432)
T ss_pred             HhhhccccCCCCEEEECCCCCCCCHHHHHH-HHhcCCCcEEEE
Confidence              11  134789999996432222 34444 455567677755

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=86.15  E-value=4.9  Score=32.63  Aligned_cols=76  Identities=11%  Similarity=-0.056  Sum_probs=51.0

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------cCCCCceeEEEEcC
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~~~~~~fD~v~~d~   60 (143)
                      +|..++......+||-++=..|..|.+++..-+..-.                             +...+.+|+|++--
T Consensus        35 ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~~  114 (378)
T PRK15001         35 LLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKV  114 (378)
T ss_pred             HHHHHhhcccCCCEEEEcCchhHHHHHHHhCCCCeeehHHHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEEe
Confidence            4555555333348999999999999999954332110                             22345799999877


Q ss_pred             Ccc--chHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKD--NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~--~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .|.  .....+..+.++|.+|+.+++-
T Consensus       115 PK~~~~l~~~l~~l~~~l~~~~~ii~g  141 (378)
T PRK15001        115 PKTLALLEQQLRALRKVVTSDTRIIAG  141 (378)
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            654  2233566777999999998754

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=86.14  E-value=1.9  Score=34.47  Aligned_cols=68  Identities=18%  Similarity=0.051  Sum_probs=45.9

Q ss_pred             hhcCCCEEEEEecc-ccHHHHHHHhhCCCCCc-----------------------c------CCCCceeEEEEcCCccch
Q 032292           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-----------------------S------ENEGSFDYAFVDADKDNY   65 (143)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~-----------------------~------~~~~~fD~v~~d~~~~~~   65 (143)
                      ...+.++|+-+|+| .|..++.+|+++...-.                       .      ...+.||+|+....    
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----  238 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----  238 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence            34567889888877 34678888987753100                       0      11223899887654    


Q ss_pred             HHHHHHHHhcccCCeEEEEecc
Q 032292           66 CNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ...++...+.|++||.+++-..
T Consensus       239 ~~~~~~~l~~l~~~G~~v~vG~  260 (339)
T COG1064         239 PATLEPSLKALRRGGTLVLVGL  260 (339)
T ss_pred             hhhHHHHHHHHhcCCEEEEECC
Confidence            4567788899999999987443

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=86.09  E-value=0.72  Score=34.58  Aligned_cols=61  Identities=18%  Similarity=0.181  Sum_probs=38.1

Q ss_pred             CEEEEEeccccHHHHHHHhhCCC---------CCc--------c---CCCCceeEEEEcCC------ccchHHHHHHHHh
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPE---------DGQ--------S---ENEGSFDYAFVDAD------KDNYCNYHERLMK   74 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~---------~~~--------~---~~~~~fD~v~~d~~------~~~~~~~~~~~~~   74 (143)
                      -++|||||-+.+..+.-...+.-         .+.        |   ...+.||+|.+.--      ....-+.+..+.+
T Consensus        53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~  132 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHK  132 (219)
T ss_pred             ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHH
Confidence            59999999866544432222210         111        2   24678999976531      1223457788889


Q ss_pred             cccCCeE
Q 032292           75 LLKVGGI   81 (143)
Q Consensus        75 ~L~~gG~   81 (143)
                      +|+++|.
T Consensus       133 fL~~~g~  139 (219)
T PF11968_consen  133 FLKPPGL  139 (219)
T ss_pred             HhCCCCc
Confidence            9999999

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=85.27  E-value=4.1  Score=32.66  Aligned_cols=69  Identities=17%  Similarity=0.138  Sum_probs=51.2

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ..+.+|||.=+|.|+.|+.+|+.-.+. .                                    ....+.+|-|++..-
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            358999999999999999999876542 1                                    011156888887764


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           62 KDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 ~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +. -.+++..+.+.+++||++-++...
T Consensus       266 ~~-a~~fl~~A~~~~k~~g~iHyy~~~  291 (341)
T COG2520         266 KS-AHEFLPLALELLKDGGIIHYYEFV  291 (341)
T ss_pred             Cc-chhhHHHHHHHhhcCcEEEEEecc
Confidence            42 245777888999999999887654

>PF14314 Methyltrans_Mon: Virus-capping methyltransferase

Probab=84.48  E-value=4.9  Score=35.09  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------------------
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------------------   46 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------------------   46 (143)
                      ++.-.|-.|=|+|-.|..+.+..|. ++                                                    
T Consensus       322 ~~~d~l~~GDGSGGita~lLR~~p~-sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~  400 (675)
T PF14314_consen  322 KYRDALCGGDGSGGITACLLRMNPT-SRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPE  400 (675)
T ss_pred             CcceeEEEecCchHHHHHHHHhCcc-cceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCcc
Confidence            4577899999999999999888764 22                                                    


Q ss_pred             ---------cCCCCceeEEEEcCCccchHH-------HHHHHHhcccCCeEEEEecc
Q 032292           47 ---------SENEGSFDYAFVDADKDNYCN-------YHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        47 ---------~~~~~~fD~v~~d~~~~~~~~-------~~~~~~~~L~~gG~li~d~~   87 (143)
                               ....-++|+|++|+...+...       .-+.+..+|.++|.|||-..
T Consensus       401 TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTY  457 (675)
T PF14314_consen  401 TWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTY  457 (675)
T ss_pred             HHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehh
Confidence                     233568999999997654221       22234478899999998743

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=84.38  E-value=8.6  Score=30.67  Aligned_cols=30  Identities=13%  Similarity=0.018  Sum_probs=23.6

Q ss_pred             HHhhcCCCEEEEEeccc-cHHHHHHHhhCCC
Q 032292           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPE   43 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~t~~la~~~~~   43 (143)
                      ++...+..+||.+|+|. |..++.+|++.+.
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~  209 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGA  209 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            33445678999999988 8899999988763

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK11524 putative methyltransferase; Provisional

Probab=83.69  E-value=2.1  Score=33.08  Aligned_cols=36  Identities=22%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             CCceeEEEEcCCc---------------cchH----HHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADK---------------DNYC----NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~---------------~~~~----~~~~~~~~~L~~gG~li~d   85 (143)
                      +++||+|++|-.-               .+|.    ..+..+.++|++||.+++.
T Consensus        25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524         25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            5789999997421               1122    4677888999999998763

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=83.42  E-value=3.3  Score=33.50  Aligned_cols=27  Identities=7%  Similarity=0.026  Sum_probs=22.6

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ...+..+|||+-...|.-|+.+.+++-
T Consensus       152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~  178 (375)
T KOG2198|consen  152 GVKPGDKVLDMCAAPGGKTAQLLEALH  178 (375)
T ss_pred             ccCCCCeeeeeccCCCccHHHHHHHHh
Confidence            456778999999999999988877754

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.21  E-value=5.2  Score=31.99  Aligned_cols=80  Identities=18%  Similarity=0.110  Sum_probs=53.2

Q ss_pred             cChHHHHHHHHHH---------hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc--------------------------
Q 032292            3 LLTIHGQLMAMLL---------RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ--------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~---------~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~--------------------------   46 (143)
                      ++-++|.++.-|.         ......+||-+|+|. |..|...|++++..-.                          
T Consensus       144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~  223 (354)
T KOG0024|consen  144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSH  223 (354)
T ss_pred             CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccc
Confidence            5566666665544         335678999999995 8899989999874211                          


Q ss_pred             ------------c-CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 ------------S-ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ------------~-~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                                  . .....+|+.|-...   ....++.+...+++||.++.-
T Consensus       224 ~~~~~~~~~~v~~~~g~~~~d~~~dCsG---~~~~~~aai~a~r~gGt~vlv  272 (354)
T KOG0024|consen  224 KSSPQELAELVEKALGKKQPDVTFDCSG---AEVTIRAAIKATRSGGTVVLV  272 (354)
T ss_pred             cccHHHHHHHHHhhccccCCCeEEEccC---chHHHHHHHHHhccCCEEEEe
Confidence                        0 11234777774332   234566778899999997653

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=82.95  E-value=5.8  Score=30.39  Aligned_cols=65  Identities=22%  Similarity=0.173  Sum_probs=42.1

Q ss_pred             hcCCCEEEEEecc-ccHHHHHHHhhCCCCCc-----------------------c----------CCCCceeEEEEcCCc
Q 032292           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-----------------------S----------ENEGSFDYAFVDADK   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~-----------------------~----------~~~~~fD~v~~d~~~   62 (143)
                      ..+..+||..|+| .|..++.+|+..+....                       .          .....+|+|+-....
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~  242 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGT  242 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCC
Confidence            4456788888876 47888888887643100                       0          113458876633221


Q ss_pred             cchHHHHHHHHhcccCCeEEEE
Q 032292           63 DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~   84 (143)
                         ...++.+.+.|+++|.++.
T Consensus       243 ---~~~~~~~~~~l~~~G~~v~  261 (338)
T cd08254         243 ---QPTFEDAQKAVKPGGRIVV  261 (338)
T ss_pred             ---HHHHHHHHHHhhcCCEEEE
Confidence               3467788899999999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=82.63  E-value=1.9  Score=37.31  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=47.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+++.|||++|..|.|.-..++.+|.++.                                 -...-+-|+|+.|+.+. 
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnV  122 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNV  122 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCcc
Confidence            46789999999999999998888886432                                 01123459999998642 


Q ss_pred             --ch-----------HHHHHHHHhcccCCeEEE
Q 032292           64 --NY-----------CNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        64 --~~-----------~~~~~~~~~~L~~gG~li   83 (143)
                        .+           ...++.+...|+.||.++
T Consensus       123 g~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv  155 (780)
T KOG1098|consen  123 GGNWVQDAFQQACLTLRALKLATEFLAKGGTFV  155 (780)
T ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence              22           134566678999999954

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=82.30  E-value=7.4  Score=30.50  Aligned_cols=67  Identities=18%  Similarity=0.117  Sum_probs=39.4

Q ss_pred             cCCCEEEEEeccc-cHHHHHHHhh-CCCCCc-------------c---------CC-C-CceeEEEEcCCcc-chHHHHH
Q 032292           18 VNAKKTIEIGVFT-GYSLLLTALT-IPEDGQ-------------S---------EN-E-GSFDYAFVDADKD-NYCNYHE   70 (143)
Q Consensus        18 ~~~~~vLeiG~g~-G~~t~~la~~-~~~~~~-------------~---------~~-~-~~fD~v~~d~~~~-~~~~~~~   70 (143)
                      .+.++||-+|+|. |..++.++++ .+....             .         .. + ..+|+|| |+... .....++
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~vi-D~~G~~~~~~~~~  240 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAF-ECVGGRGSQSAIN  240 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEE-ECCCCCccHHHHH
Confidence            4568999999753 3345555664 321100             0         00 1 1378777 43322 1345788


Q ss_pred             HHHhcccCCeEEEEe
Q 032292           71 RLMKLLKVGGIAVYD   85 (143)
Q Consensus        71 ~~~~~L~~gG~li~d   85 (143)
                      ...++|++||.+++-
T Consensus       241 ~~~~~l~~~G~iv~~  255 (341)
T cd08237         241 QIIDYIRPQGTIGLM  255 (341)
T ss_pred             HHHHhCcCCcEEEEE
Confidence            889999999998753

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=82.12  E-value=1.4  Score=29.58  Aligned_cols=22  Identities=9%  Similarity=0.191  Sum_probs=17.8

Q ss_pred             CCCEEEEEeccccHHHHHHHhh
Q 032292           19 NAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      ++..-+|||||.|...--|.+.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E   79 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE   79 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC
Confidence            4568999999999988776654

; GO: 0008168 methyltransferase activity

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=81.95  E-value=2.2  Score=34.91  Aligned_cols=35  Identities=11%  Similarity=0.213  Sum_probs=29.2

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +++++.+....+.+.++|+|.|.|+.+..|+-..+
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~  176 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG  176 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC
Confidence            46667777777889999999999999999987654

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=81.35  E-value=1.5  Score=31.28  Aligned_cols=30  Identities=13%  Similarity=0.218  Sum_probs=21.1

Q ss_pred             HHHHHHHhh---cCCCEEEEEeccccHHHHHHH
Q 032292            9 QLMAMLLRL---VNAKKTIEIGVFTGYSLLLTA   38 (143)
Q Consensus         9 ~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la   38 (143)
                      .+++.+-..   ...+.++|+|||+|..++..+
T Consensus        35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s   67 (185)
T KOG3420|consen   35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS   67 (185)
T ss_pred             HHHHHHHhhhccccCcchhhhcCchhhhHHHhh
Confidence            455555443   357899999999999985443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=81.31  E-value=5  Score=26.46  Aligned_cols=74  Identities=19%  Similarity=0.158  Sum_probs=46.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------c-CCCCceeEEEEcCCccchHHHHHHHH
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------S-ENEGSFDYAFVDADKDNYCNYHERLM   73 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------~-~~~~~fD~v~~d~~~~~~~~~~~~~~   73 (143)
                      |.+...+++... .+|+-+..  .-.-..+++.++.+..             . .....+|.||-....   ...++...
T Consensus         3 G~~a~q~ak~~G-~~vi~~~~--~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---~~~~~~~~   76 (130)
T PF00107_consen    3 GLMAIQLAKAMG-AKVIATDR--SEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---GDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHTT-SEEEEEES--SHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---HHHHHHHH
T ss_pred             HHHHHHHHHHcC-CEEEEEEC--CHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc---HHHHHHHH
Confidence            555666666655 66554443  3445566676652111             1 223579999865442   45788899


Q ss_pred             hcccCCeEEEEecc
Q 032292           74 KLLKVGGIAVYDNT   87 (143)
Q Consensus        74 ~~L~~gG~li~d~~   87 (143)
                      .+|+++|.+++-..
T Consensus        77 ~~l~~~G~~v~vg~   90 (130)
T PF00107_consen   77 KLLRPGGRIVVVGV   90 (130)
T ss_dssp             HHEEEEEEEEEESS
T ss_pred             HHhccCCEEEEEEc
Confidence            99999999987443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.27  E-value=10  Score=27.14  Aligned_cols=79  Identities=16%  Similarity=0.111  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC--CCCCc-------------------------------cCCCCc
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI--PEDGQ-------------------------------SENEGS   52 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~--~~~~~-------------------------------~~~~~~   52 (143)
                      ++-+=...++..++..+.+|+|+|-|..-+..++..  +..|.                               ...-.+
T Consensus        59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d  138 (199)
T KOG4058|consen   59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD  138 (199)
T ss_pred             HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence            333333344444566899999999998777766553  22222                               122356


Q ss_pred             eeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        53 fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      |..|.+-+...-....-+++..-+..|..++.
T Consensus       139 y~~vviFgaes~m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  139 YRNVVIFGAESVMPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             cceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence            66777666544344444455556677777764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=81.18  E-value=7.9  Score=29.85  Aligned_cols=64  Identities=19%  Similarity=0.190  Sum_probs=41.2

Q ss_pred             CCCEEEEEecc-ccHHHHHHHhhCCCCCc-------------------c-C--CCCceeEEEEcCCccchHHHHHHHHhc
Q 032292           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQ-------------------S-E--NEGSFDYAFVDADKDNYCNYHERLMKL   75 (143)
Q Consensus        19 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~-------------------~-~--~~~~fD~v~~d~~~~~~~~~~~~~~~~   75 (143)
                      +.+++|-+|+| .|..++.+|++.+..-.                   . .  ....+|+|| |+...  ...++.+.+.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvi-d~~G~--~~~~~~~~~~  220 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIY-DASGD--PSLIDTLVRR  220 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEE-ECCCC--HHHHHHHHHh
Confidence            45789999975 36677778887653210                   0 0  123578777 44322  3456788899


Q ss_pred             ccCCeEEEEe
Q 032292           76 LKVGGIAVYD   85 (143)
Q Consensus        76 L~~gG~li~d   85 (143)
                      |+++|.+++-
T Consensus       221 l~~~G~iv~~  230 (308)
T TIGR01202       221 LAKGGEIVLA  230 (308)
T ss_pred             hhcCcEEEEE
Confidence            9999999853

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=81.03  E-value=4.5  Score=34.16  Aligned_cols=70  Identities=17%  Similarity=0.102  Sum_probs=46.8

Q ss_pred             cCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------cC-C--------------C---------
Q 032292           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------SE-N--------------E---------   50 (143)
Q Consensus        18 ~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~~-~--------------~---------   50 (143)
                      .++.+|+-+|+|. |..++..|+.++..-.                      .. .              +         
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            4689999999986 7788888888764100                      00 0              0         


Q ss_pred             ----CceeEEEEcCCccc--hHHH-HHHHHhcccCCeEEEEecc
Q 032292           51 ----GSFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        51 ----~~fD~v~~d~~~~~--~~~~-~~~~~~~L~~gG~li~d~~   87 (143)
                          ..+|+|+-.+....  .+.. .++..+.+||||+++.=.+
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                34899887654322  2334 4889999999999875333

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=80.58  E-value=9.5  Score=27.89  Aligned_cols=64  Identities=16%  Similarity=0.112  Sum_probs=42.1

Q ss_pred             cCCCEEEEEeccc-cHHHHHHHhhCCCCCc---------------------c------------CCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQ---------------------S------------ENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~-G~~t~~la~~~~~~~~---------------------~------------~~~~~fD~v~~d~~~~   63 (143)
                      .+.++||..|+|. |..++.+++.....-.                     .            ...+.+|+++..... 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~-  211 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG-  211 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC-
Confidence            5678999999985 7777777776542100                     0            013568888854432 


Q ss_pred             chHHHHHHHHhcccCCeEEEE
Q 032292           64 NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~   84 (143)
                        ...++.+.+.|+++|.++.
T Consensus       212 --~~~~~~~~~~l~~~G~~v~  230 (271)
T cd05188         212 --PETLAQALRLLRPGGRIVV  230 (271)
T ss_pred             --HHHHHHHHHhcccCCEEEE
Confidence              1346677889999999875

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=80.41  E-value=6.5  Score=30.63  Aligned_cols=34  Identities=6%  Similarity=0.049  Sum_probs=25.5

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ++||+|++..-..+....++.+.+++++++.++.
T Consensus        71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence            5799999876444456677888888999987753

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=80.28  E-value=1.3  Score=36.07  Aligned_cols=19  Identities=11%  Similarity=0.272  Sum_probs=15.7

Q ss_pred             CCEEEEEeccccHHHHHHH
Q 032292           20 AKKTIEIGVFTGYSLLLTA   38 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la   38 (143)
                      +-+|+|+|||+|..|+.+.
T Consensus        64 ~~~iaDlGcs~G~ntl~~v   82 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHII   82 (386)
T ss_pred             ceeEEEecCCCCccHHHHH
Confidence            5589999999998887653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=80.12  E-value=9.5  Score=29.79  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=39.8

Q ss_pred             CCCEEEEEecc-ccHHHHHHHhhCCCCCc----------------------c----------CCCCceeEEEEcCCccch
Q 032292           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQ----------------------S----------ENEGSFDYAFVDADKDNY   65 (143)
Q Consensus        19 ~~~~vLeiG~g-~G~~t~~la~~~~~~~~----------------------~----------~~~~~fD~v~~d~~~~~~   65 (143)
                      +.++||-+|+| .|..++.+|+..+..-.                      .          ...+.+|+||-....   
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~---  245 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH---  245 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC---
Confidence            56789988875 25566677777653100                      0          011347887743321   


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 032292           66 CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...++.+.+.|++||.++.-
T Consensus       246 ~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        246 PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             HHHHHHHHHHhhcCCEEEEE
Confidence            23567788999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		3e-48
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		2e-38
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		8e-20
3cbg_A	232	Functional And Structural Characterization Of A Cat		9e-19
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		2e-16
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		6e-15
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		2e-11
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		4e-08
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		6e-05
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		9e-04

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  186 bits (473), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 118/182 (64%), Gaps = 45/182 (24%)
Query: 6   IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------- 46
           + GQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+                   
Sbjct: 57  LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR 116
Query: 47  -------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 81
                                     E+EGS+D+ FVDADK NY  YHERLMKL+KVGGI
Sbjct: 117 KAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGI 176
Query: 82  AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
             YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR
Sbjct: 177 VAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR 235
Query: 142 IF 143
           ++
Sbjct: 236 LY 237

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 105/179 (58%), Gaps = 44/179 (24%)
Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+                     
Sbjct: 68  GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA 127
Query: 47  -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                   +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  
Sbjct: 128 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 187
Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 49/179 (27%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----SENEG----------- 51
             Q M ML+RL  AKK +E+G FTGYS L  +L +P+DGQ      NEG           
Sbjct: 48  QAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE 107
Query: 52  ----------------------------SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                        FD+ F+DADK NY NY+E  +KL+   G+  
Sbjct: 108 AKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIA 167
Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
            DN  W G V  P +       G +R+ I  LN+ + +D RV +S +A+ DG+ + + I
Sbjct: 168 IDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 78/178 (43%), Gaps = 53/178 (29%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------- 46
             Q + +L+ L  AK+ +EIGVF GYS L  AL +P DGQ                    
Sbjct: 60  QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119
Query: 47  -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                   +    FD  F+DADK NY  Y+E  + LL+ GG+ V
Sbjct: 120 AGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMV 179
Query: 84  YDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 139
            DN LW G V    P+E        +  Q +   NR LA D RV++S + LGDG+T+ 
Sbjct: 180 IDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLAQDERVRISVIPLGDGMTLA 229

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 83/179 (46%), Gaps = 49/179 (27%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------------------Q 46
             QL+A L RL+ AKK +++G FTGYS L  AL +P DG                    Q
Sbjct: 57  QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116
Query: 47  SENE-----------------------GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
           +E E                       G+FD A VDADK+N   Y+ER ++LL+ GGI  
Sbjct: 117 AEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILA 176
Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
               LW G V  P +         + + + +LN  +  D RV +S + LGDG+T+  +I
Sbjct: 177 VLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 49/178 (27%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------SEN 49
             QL+A+L++L  AKK I+IG FTGYS +   L +P+DG                   E 
Sbjct: 52  QAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEK 111
Query: 50  EG--------------------------SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
            G                           +D  ++DADK N   Y+E  +KLL+ GG+  
Sbjct: 112 AGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIA 171
Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
            DN L  G VA  E Q        + Q I   N+ +  D RV    + +GDG+T+ R+
Sbjct: 172 VDNVLRRGQVADEENQ------SENNQLIRLFNQKVYKDERVDXILIPIGDGLTLARK 223

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 60/189 (31%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE----------------------- 43
            GQ + +L ++  AK+ IEIG FTGYS L  A  +PE                       
Sbjct: 48  EGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE 107
Query: 44  ----------------------DGQSENEGSFDYAF---------VDADKDNYCNYHERL 72
                                 D +S    + D+AF         +DADK+NY NY+  +
Sbjct: 108 NGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLI 167
Query: 73  MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 132
           +KLLK GG+ + DN LW G+VA    Q P      S   I   N  + +D  V +S V +
Sbjct: 168 LKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGIRKFNELVYNDSLVDVSLVPI 221
Query: 133 GDGITICRR 141
            DG+++ R+
Sbjct: 222 ADGVSLVRK 230

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 40/131 (30%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------SEN--- 49
            GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DGQ               EN   
Sbjct: 51  QGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENLQL 110
Query: 50  ----------EG-------------SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 86
                     EG             +FD  F+DADK N  +Y    ++  + G + + DN
Sbjct: 111 AGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDN 170
Query: 87  TLWGGTVAVPE 97
            +  G V  P+
Sbjct: 171 VVRDGEVVNPQ 181

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 61/162 (37%), Gaps = 50/162 (30%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------------------- 45
            G+ + +L+++  A+  +EIG   GYS +  A  +   G                     
Sbjct: 46  QGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER 105
Query: 46  -------------------QSENEG--SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84
                              Q ENE    FD+ F+DADK N   Y E  +KL + G + + 
Sbjct: 106 ANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIG 165
Query: 85  DNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSLADDPRV 125
           DN        V E +V D+     R Q I      +A +PRV
Sbjct: 166 DNV-------VREGEVIDNTSNDPRVQGIRRFYELIAAEPRV 200

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 53  FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI 112
           FD  F+DA K  Y  + +     ++ GG+ + DN L+ G VA   E   +H R       
Sbjct: 127 FDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLFRGLVA---ETDIEHKRHKQLATK 183
Query: 113 LD-LNRSLADDPRVQLSHVALGDGITIC 139
           +D  N+ L + P+       +GDGI I 
Sbjct: 184 IDTYNQWLLEHPQYDTRIFPVGDGIAIS 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-57
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	8e-57
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	7e-53
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	1e-52
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	3e-52
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	1e-51
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	2e-51
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	5e-50
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	7e-50
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	1e-49
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	4e-49
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	3e-46
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	2e-45
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	1e-36

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  177 bits (451), Expect = 2e-57
 Identities = 93/187 (49%), Positives = 119/187 (63%), Gaps = 45/187 (24%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------- 46
           M    + GQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+              
Sbjct: 52  MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111

Query: 47  ------------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLL 76
                                          E+EGS+D+ FVDADK NY  YHERLMKL+
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171

Query: 77  KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 136
           KVGGI  YDNTLWGGTVA PE +VPD  +  +R+A+++LN+ LA DPR+++ H+ LGDGI
Sbjct: 172 KVGGIVAYDNTLWGGTVAQPESEVPDFMK-ENREAVIELNKLLAADPRIEIVHLPLGDGI 230

Query: 137 TICRRIF 143
           T CRR++
Sbjct: 231 TFCRRLY 237

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  176 bits (448), Expect = 8e-57
 Identities = 80/186 (43%), Positives = 106/186 (56%), Gaps = 44/186 (23%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------- 46
           M      GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+              
Sbjct: 61  MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 120

Query: 47  ------------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLL 76
                                          +N GS+D+ FVDADKDNY NYH+RL+ L+
Sbjct: 121 LPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV 180

Query: 77  KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 136
           KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGI
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 240

Query: 137 TICRRI 142
           TICRRI
Sbjct: 241 TICRRI 246

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  166 bits (422), Expect = 7e-53
 Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 49/185 (26%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------- 46
           M +     Q M ML+RL  AKK +E+G FTGYS L  +L +P+DGQ              
Sbjct: 42  MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101

Query: 47  -----------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLK 77
                                           E  FD+ F+DADK NY NY+E  +KL+ 
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVT 161

Query: 78  VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGIT 137
             G+   DN  W G V  P +           + I  LN+ + +D RV +S +A+ DG+ 
Sbjct: 162 PKGLIAIDNIFWDGKVIDPNDTSGQ------TREIKKLNQVIKNDSRVFVSLLAIADGMF 215

Query: 138 ICRRI 142
           + + I
Sbjct: 216 LVQPI 220

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  164 bits (418), Expect = 1e-52
 Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 49/184 (26%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------- 46
           M       QL+A+L++L+ AKK I+IG FTGYS +   L +P+DG               
Sbjct: 46  MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALA 105

Query: 47  -----------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLK 77
                                        +     +D  ++DADK N   Y+E  +KLL+
Sbjct: 106 KEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLR 165

Query: 78  VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGIT 137
            GG+   DN L  G VA  E Q  ++      Q I   N+ +  D RV +  + +GDG+T
Sbjct: 166 EGGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDMILIPIGDGLT 219

Query: 138 ICRR 141
           + R+
Sbjct: 220 LARK 223

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  164 bits (416), Expect = 3e-52
 Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 49/185 (26%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------- 46
            ++     QL+A L RL+ AKK +++G FTGYS L  AL +P DG+              
Sbjct: 51  SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 110

Query: 47  -----------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLK 77
                                        +   G+FD A VDADK+N   Y+ER ++LL+
Sbjct: 111 RPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLR 170

Query: 78  VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGIT 137
            GGI      LW G V  P +           + + +LN  +  D RV +S + LGDG+T
Sbjct: 171 PGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDGLT 224

Query: 138 ICRRI 142
           +  +I
Sbjct: 225 LAFKI 229

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  162 bits (412), Expect = 1e-51
 Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 41/173 (23%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
             L+  L+R+ N K  +EIG   GYS +  A  I +D                       
Sbjct: 60  LDLIKQLIRMNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATY 118

Query: 46  -----------------QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 88
                            ++ N+  +D  F+DA K     + E    LLK  G+ + DN L
Sbjct: 119 HFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVL 178

Query: 89  WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
           + G V+        + R    + + D N  L   P    + + + DG+ I  +
Sbjct: 179 YHGFVSDIGIVRSRNVR-QMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  162 bits (411), Expect = 2e-51
 Identities = 58/184 (31%), Positives = 79/184 (42%), Gaps = 49/184 (26%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------- 46
           M +     Q + +L+ L  AK+ +EIGVF GYS L  AL +P DGQ              
Sbjct: 54  MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113

Query: 47  -----------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLK 77
                                         +    FD  F+DADK NY  Y+E  + LL+
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLR 173

Query: 78  VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGIT 137
            GG+ V DN LW G V   + Q          Q +   NR LA D RV++S + LGDG+T
Sbjct: 174 RGGLMVIDNVLWHGKVTEVDPQEAQT------QVLQQFNRDLAQDERVRISVIPLGDGMT 227

Query: 138 ICRR 141
           +  +
Sbjct: 228 LALK 231

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  158 bits (402), Expect = 5e-50
 Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 43/174 (24%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------------------- 45
            + +  LL++    + +EIG   GYS +  A  +P +                       
Sbjct: 43  MESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKAL 101

Query: 46  ------------------QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT 87
                             + E    FD  F+DA K  Y  + +    +++ GG+ + DN 
Sbjct: 102 GLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNV 161

Query: 88  LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 141
           L+ G VA  + +   H +      I   N+ L + P+       +GDGI I  +
Sbjct: 162 LFRGLVAETDIEHKRHKQ--LATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIK 213

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  158 bits (402), Expect = 7e-50
 Identities = 40/185 (21%), Positives = 63/185 (34%), Gaps = 51/185 (27%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------------- 45
             +    GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DG               
Sbjct: 45  HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVA 104

Query: 46  -------------------------QSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 80
                                          +FD  F+DADK N  +Y    ++  + G 
Sbjct: 105 RENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGT 164

Query: 81  IAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV-----QLSHVALGDG 135
           + + DN +  G V  P+            Q +      +  +PR+     Q       DG
Sbjct: 165 LIIGDNVVRDGEVVNPQSADER------VQGVRQFIEMMGAEPRLTATALQTVGTKGWDG 218

Query: 136 ITICR 140
            T+  
Sbjct: 219 FTLAW 223

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  157 bits (399), Expect = 1e-49
 Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 53/188 (28%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------- 46
             +    G+ + +L+++  A+  +EIG   GYS +  A  +   G+              
Sbjct: 40  HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIA 99

Query: 47  ----------------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKV 78
                                       +E    FD+ F+DADK N   Y E  +KL + 
Sbjct: 100 RSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRP 159

Query: 79  GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV-----QLSHVALG 133
           G + + DN +  G V       P        Q I      +A +PRV     Q       
Sbjct: 160 GTVIIGDNVVREGEVIDNTSNDPR------VQGIRRFYELIAAEPRVSATALQTVGSKGY 213

Query: 134 DGITICRR 141
           DG  +   
Sbjct: 214 DGFIMAVV 221

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  155 bits (394), Expect = 4e-49
 Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 44/172 (25%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           G+L+ +L R+   +  +  G   G +    A  I    +                     
Sbjct: 45  GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN 104

Query: 47  ----------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWG 90
                           +  +   D  F+D D  N  +  ER+ + L    + +  N L  
Sbjct: 105 GLIDRVELQVGDPLGIAAGQRDIDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRR 164

Query: 91  GTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           G+VA   E            A+ + N  L+       + V +G+G+ +  R+
Sbjct: 165 GSVAESHEDP-------ETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL 209

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  149 bits (378), Expect = 3e-46
 Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 60/195 (30%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLL-----------LTAL---------- 39
           M +    GQ + +L ++  AK+ IEIG FTGYS L           +             
Sbjct: 42  MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101

Query: 40  ----------------------TIPE-----------DGQSENEGSFDYAFVDADKDNYC 66
                                 T+                +    S D  F+DADK+NY 
Sbjct: 102 RKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP 161

Query: 67  NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 126
           NY+  ++KLLK GG+ + DN LW G+VA    Q P          I   N  + +D  V 
Sbjct: 162 NYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPST------VGIRKFNELVYNDSLVD 215

Query: 127 LSHVALGDGITICRR 141
           +S V + DG+++ R+
Sbjct: 216 VSLVPIADGVSLVRK 230

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  146 bits (371), Expect = 2e-45
 Identities = 28/178 (15%), Positives = 48/178 (26%), Gaps = 49/178 (27%)

Query: 8   GQLMAMLLRLVN---AKKTIEIGVFTGYSLLLTALTIPEDGQ------------------ 46
           GQL+  L    N   +   I I    G   L     + ++                    
Sbjct: 42  GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF 101

Query: 47  ----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84
                                      S+   F      +     +    LL+ GG  V 
Sbjct: 102 REAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVL 161

Query: 85  DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
            + L  GT+A    +  D       QA  D +  +       ++ + LG G+T+  + 
Sbjct: 162 ADALLDGTIADQTRKDRDT------QAARDADEYIRSIEGAHVARLPLGAGLTVVTKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  123 bits (312), Expect = 1e-36
 Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 58/177 (32%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQ+M  ++R  +    +E+G + GYS +  A  +    +                     
Sbjct: 47  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA 106

Query: 47  ----------------------SENEGSFDYAFVDADKDNYCNYHERLM--KLLKVGGIA 82
                                   +  + D  F+D  KD Y      L    LL+ G + 
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVL 166

Query: 83  VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 139
           + DN +  GT                   +   +          L ++ + DG+   
Sbjct: 167 LADNVIVPGTPDFLA-------------YVRGSSSFECTHYSSYLEYMKVVDGLEKA 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.96
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.96
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.96
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.96
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.95
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.94
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.94
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.94
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.94
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.93
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.91
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.91
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.88
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.87
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.62
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.58
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.47
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.26
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.26
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.25
2o07_A	304	Spermidine synthase; structural genomics, structur	99.25
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.23
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.23
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.2
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.14
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.11
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.11
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.1
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.1
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.1
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.09
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.08
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.07
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.06
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.06
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.05
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.05
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.04
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.03
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.03
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.01
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.01
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.0
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.99
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.99
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.99
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.98
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.98
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.97
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.97
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.97
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.97
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.96
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.96
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.95
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.95
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.95
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.95
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.94
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.94
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.94
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.94
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.94
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.94
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.94
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.94
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.93
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.93
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.93
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.93
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.92
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.92
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.91
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.91
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.91
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.9
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.9
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.9
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.9
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.89
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.89
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.89
3ocj_A	305	Putative exported protein; structural genomics, PS	98.89
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.89
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.88
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.88
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.88
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.88
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.88
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.88
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.88
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.88
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.87
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.87
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.87
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.87
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.87
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.86
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.86
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.86
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.86
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.86
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.86
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.85
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.85
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.85
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.85
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.84
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.84
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.84
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.83
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.83
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.83
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.83
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.83
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.82
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.82
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.82
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.82
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	98.82
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.82
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.82
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.82
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.82
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.81
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.81
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.81
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.81
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.81
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.81
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.81
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.81
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.81
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.8
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.79
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.79
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.79
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.79
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.79
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.79
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.78
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.78
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.78
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.76
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.76
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.75
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.75
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.74
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.74
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.74
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.74
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.73
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.73
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.72
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.72
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.72
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.72
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.71
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.71
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.71
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.71
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.71
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.7
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.7
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.7
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.7
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.68
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.67
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.67
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.66
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.66
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.66
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.65
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.65
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.65
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.64
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.64
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.63
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.62
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.62
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.62
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.62
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.61
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.6
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.59
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.58
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.58
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.58
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.57
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.56
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.56
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.55
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.55
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.53
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.53
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.53
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.51
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.5
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.5
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.5
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.49
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.48
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.47
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.47
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.47
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.46
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.46
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.45
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.45
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.44
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.44
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.41
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.41
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.4
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.4
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.4
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.39
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.37
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.36
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.36
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.34
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.33
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.32
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.32
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.3
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.29
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.27
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.26
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.26
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.25
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.23
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.2
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.2
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.19
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.17
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.16
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.15
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.13
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.13
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.09
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.03
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.0
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.99
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.98
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.94
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.93
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.93
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.92
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.9
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.88
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.88
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.85
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.85
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.84
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.79
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.74
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.63
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.6
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.6
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.59
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.51
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.46
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.35
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.3
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.26
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.2
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.17
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.15
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.13
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.07
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.96
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	96.96
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.96
3lkd_A	542	Type I restriction-modification system methyltrans	96.95
3khk_A	544	Type I restriction-modification system methylation	96.94
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.88
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.76
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.73
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.72
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.64
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.59
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	96.58
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	96.54
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.52
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.47
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.22
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.13
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.08
3ufb_A	530	Type I restriction-modification system methyltran	96.06
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	95.93
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	95.81
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.74
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.61
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.2
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	94.55
3ll7_A	410	Putative methyltransferase; methytransferase, stru	93.24
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.59
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	92.58
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.29
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.22
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.14
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.1
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	91.63
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	91.32
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.13
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	90.61
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	89.72
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	89.61
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.57
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.47
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	88.5
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	88.22
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	87.98
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	87.52
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	87.49
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	87.48
3gms_A	340	Putative NADPH:quinone reductase; structural genom	87.33
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	87.31
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	87.25
2oo3_A	283	Protein involved in catabolism of external DNA; st	87.2
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.18
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	86.98
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	86.78
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	86.67
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	86.4
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	86.07
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	85.8
4eye_A	342	Probable oxidoreductase; structural genomics, niai	85.7
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	85.66
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	85.33
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	84.97
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	84.75
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	84.46
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	84.38
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	83.22
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	83.2
4gua_A	670	Non-structural polyprotein; viral precursor polypr	83.02
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	82.89
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	82.33
2zig_A	297	TTHA0409, putative modification methylase; methylt	82.24
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	82.2
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	81.62
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	80.96
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	80.8
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	80.72
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	80.55
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	80.26

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.96  E-value=4.4e-29  Score=187.11  Aligned_cols=136  Identities=41%  Similarity=0.706  Sum_probs=120.0

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |+++++++++|..++...++++|||||||+|++|+++|+.++++++                                  
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            5689999999999999999999999999999999999998864333                                  


Q ss_pred             ----cCC-----CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292           47 ----SEN-----EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  117 (143)
Q Consensus        47 ----~~~-----~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~  117 (143)
                          +..     .++||+||+|+.+.+|..+++.+.++|+|||+|++||++|.|.+.++....+      ...++++|++
T Consensus       122 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~------~~~~~~~~~~  195 (242)
T 3r3h_A          122 LDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSG------QTREIKKLNQ  195 (242)
T ss_dssp             HHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCH------HHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccCh------HHHHHHHHHH
Confidence                111     4789999999999999999999999999999999999999998887643211      4568999999


Q ss_pred             HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          118 SLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       118 ~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      .+.++++|+++++|++||+++++||
T Consensus       196 ~l~~~~~~~~~~lp~~dG~~~~~k~  220 (242)
T 3r3h_A          196 VIKNDSRVFVSLLAIADGMFLVQPI  220 (242)
T ss_dssp             HHHTCCSEEEEEESSSSCEEEEEEC
T ss_pred             HHhhCCCEEEEEEEccCceEEEEEc
Confidence            9999999999999999999999986

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.96  E-value=1.2e-28  Score=182.67  Aligned_cols=135  Identities=21%  Similarity=0.273  Sum_probs=118.3

Q ss_pred             CcChHHHHHHHHHHhhcCCC---EEEEEeccccHHHHHHHhhCCCCCc--------------------------------
Q 032292            2 LLLTIHGQLMAMLLRLVNAK---KTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------   46 (143)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~---~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------   46 (143)
                      .+++.++++|..++...+++   +|||||||+|+++++||++++++++                                
T Consensus        36 ~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~  115 (221)
T 3dr5_A           36 APDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL  115 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence            46899999999999998888   9999999999999999998865443                                


Q ss_pred             -------cCC-CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 032292           47 -------SEN-EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  118 (143)
Q Consensus        47 -------~~~-~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~  118 (143)
                             +.. .++||+||+|+++.+|..+++.+.++|+|||++++||++|.|.+.+++...      ....++++|++.
T Consensus       116 gda~~~l~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~------~~~~~~~~~~~~  189 (221)
T 3dr5_A          116 SRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKD------RDTQAARDADEY  189 (221)
T ss_dssp             SCHHHHGGGSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCC------HHHHHHHHHHHH
T ss_pred             cCHHHHHHHhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCC------hHHHHHHHHHHH
Confidence                   112 578999999999999999999999999999999999999999988764221      145679999999


Q ss_pred             hhcCCCeeEEEeecCCeeEEEEEc
Q 032292          119 LADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       119 l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      +.++|+++++++|+|+|+++++|-
T Consensus       190 l~~~~~~~~~~lp~gdGl~~~~~~  213 (221)
T 3dr5_A          190 IRSIEGAHVARLPLGAGLTVVTKA  213 (221)
T ss_dssp             HTTCTTEEEEEESSTTCEEEEEEC
T ss_pred             HhhCCCeeEEEeeccchHHHHHHH
Confidence            999999999999999999999973

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.96  E-value=1.1e-28  Score=184.19  Aligned_cols=142  Identities=65%  Similarity=1.149  Sum_probs=123.1

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++++++++..++...++++|||||||+|++++++|+.++++++                                  
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4678999999999999999999999999999999999999875443                                  


Q ss_pred             ----cC------CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHH
Q 032292           47 ----SE------NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  116 (143)
Q Consensus        47 ----~~------~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~  116 (143)
                          +.      ..++||+||+|+++.+|..+++.+.++|+|||+|++||++|.|.+.++....+...++ ....+++|+
T Consensus       132 ~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~-~~~~i~~~~  210 (237)
T 3c3y_A          132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKE-NREAVIELN  210 (237)
T ss_dssp             HHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHH-HHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHH-HHHHHHHHH
Confidence                11      1478999999999999999999999999999999999999999988764333333443 567899999


Q ss_pred             HHhhcCCCeeEEEeecCCeeEEEEEcC
Q 032292          117 RSLADDPRVQLSHVALGDGITICRRIF  143 (143)
Q Consensus       117 ~~l~~~~~~~~~~lp~~~Gl~~~~k~~  143 (143)
                      +.+.+++++.++++|++||+++++|++
T Consensus       211 ~~l~~~~~~~~~~lp~~dG~~~~~~~~  237 (237)
T 3c3y_A          211 KLLAADPRIEIVHLPLGDGITFCRRLY  237 (237)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEECC
T ss_pred             HHHhcCCCeEEEEEEeCCceEEEEEcC
Confidence            999999999999999999999999974

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.96  E-value=2.1e-28  Score=183.93  Aligned_cols=142  Identities=57%  Similarity=0.986  Sum_probs=122.2

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++++++++..++...++++|||||||+|++++++|+.++++++                                  
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            4688999999999999989999999999999999999999875433                                  


Q ss_pred             ----cCC------CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCc-ccchHHHHHHH
Q 032292           47 ----SEN------EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF-RGSSRQAILDL  115 (143)
Q Consensus        47 ----~~~------~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~f  115 (143)
                          +..      .++||+||+|+++.+|..+++.+.++|+|||+|++||++|.|.+.+++...+... ++ ...++++|
T Consensus       141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~-~~~~i~~~  219 (247)
T 1sui_A          141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLEL  219 (247)
T ss_dssp             HHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhH-HHHHHHHH
Confidence                111      4789999999999899999999999999999999999999999988754333211 22 45689999


Q ss_pred             HHHhhcCCCeeEEEeecCCeeEEEEEcC
Q 032292          116 NRSLADDPRVQLSHVALGDGITICRRIF  143 (143)
Q Consensus       116 ~~~l~~~~~~~~~~lp~~~Gl~~~~k~~  143 (143)
                      ++.+..++++.++++|++||+++++|+.
T Consensus       220 ~~~l~~~~~~~~~~lp~~dG~~l~~k~~  247 (247)
T 1sui_A          220 NKALAVDPRIEICMLPVGDGITICRRIK  247 (247)
T ss_dssp             HHHHHTCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHhhCCCeEEEEEecCCccEEEEEcC
Confidence            9999999999999999999999999874

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.95  E-value=1.1e-26  Score=172.55  Aligned_cols=136  Identities=43%  Similarity=0.723  Sum_probs=119.0

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++.+++++..++...++++|||||||+|++++++++.++++++                                  
T Consensus        54 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  133 (232)
T 3cbg_A           54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA  133 (232)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            5689999999999999889999999999999999999998874333                                  


Q ss_pred             -------cCCC--CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292           47 -------SENE--GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  117 (143)
Q Consensus        47 -------~~~~--~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~  117 (143)
                             +...  ++||+||+|+.+.+|..+++.+.++|+|||+|+++|++|.|.+.++....     . ....+++|++
T Consensus       134 ~~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~-----~-~~~~~~~~~~  207 (232)
T 3cbg_A          134 LATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQE-----A-QTQVLQQFNR  207 (232)
T ss_dssp             HHHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCS-----H-HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCC-----h-HHHHHHHHHH
Confidence                   0011  78999999999889999999999999999999999999999988764221     1 5678999999


Q ss_pred             HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          118 SLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       118 ~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      .+.+++++.++++|+++|+++++|+
T Consensus       208 ~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          208 DLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             HHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            9999999999999999999999985

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.94  E-value=2.3e-26  Score=168.87  Aligned_cols=137  Identities=39%  Similarity=0.604  Sum_probs=119.0

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++..++++..++...++++|||||||+|++++++++.+++.++                                  
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            4578999999999999989999999999999999999998874333                                  


Q ss_pred             ----cCCC-----CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292           47 ----SENE-----GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  117 (143)
Q Consensus        47 ----~~~~-----~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~  117 (143)
                          +...     ++||+||+|+....+..+++.+.++|+|||+++++|++|.|.+..++...+      ...++++|++
T Consensus       126 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~------~~~~~~~~~~  199 (225)
T 3tr6_A          126 KDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSE------NNQLIRLFNQ  199 (225)
T ss_dssp             HHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCH------HHHHHHHHHH
T ss_pred             HHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccCh------HHHHHHHHHH
Confidence                0111     789999999998889999999999999999999999999998887643211      4568999999


Q ss_pred             HhhcCCCeeEEEeecCCeeEEEEEcC
Q 032292          118 SLADDPRVQLSHVALGDGITICRRIF  143 (143)
Q Consensus       118 ~l~~~~~~~~~~lp~~~Gl~~~~k~~  143 (143)
                      .+..+++++++++|+++|+++++|+.
T Consensus       200 ~l~~~~~~~~~~lp~~dG~~~~~k~~  225 (225)
T 3tr6_A          200 KVYKDERVDMILIPIGDGLTLARKKS  225 (225)
T ss_dssp             HHHHCTTEEEEEECSTTCEEEEEECC
T ss_pred             HHhcCCCeEEEEEEcCCccEEEEECC
Confidence            99999999999999999999999973

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.94  E-value=3.6e-26  Score=169.68  Aligned_cols=138  Identities=26%  Similarity=0.357  Sum_probs=118.5

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +.++.++++..++...++++|||||||+|++++++|+..+. ++                                    
T Consensus        55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (232)
T 3ntv_A           55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDD-IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE  133 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTT-CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence            57889999999999989999999999999999999996542 22                                    


Q ss_pred             --c-CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 032292           47 --S-ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  123 (143)
Q Consensus        47 --~-~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~  123 (143)
                        + ...++||+||+++....+..+++.+.++|+|||++++||++|.|.+.+++...+++.+. ...++++|++.+..++
T Consensus       134 ~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~  212 (232)
T 3ntv_A          134 QFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQ-MVKKVQDYNEWLIKQP  212 (232)
T ss_dssp             CHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHH-HHHHHHHHHHHHHTCT
T ss_pred             HHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhH-HHHHHHHHHHHHhcCC
Confidence              1 22578999999999999999999999999999999999999999988765422332333 5568999999999999


Q ss_pred             CeeEEEeecCCeeEEEEEc
Q 032292          124 RVQLSHVALGDGITICRRI  142 (143)
Q Consensus       124 ~~~~~~lp~~~Gl~~~~k~  142 (143)
                      +++++++|+++|+.+++||
T Consensus       213 ~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          213 GYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             TEEEEEECSTTCEEEEEEC
T ss_pred             CeEEEEEEcCCceEEEEEC
Confidence            9999999999999999986

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.94  E-value=1.7e-25  Score=164.21  Aligned_cols=137  Identities=28%  Similarity=0.440  Sum_probs=118.4

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++..++++..++...++++|||||||+|++++++|+.+++.++                                  
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (223)
T 3duw_A           40 HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA  119 (223)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4578999999999999999999999999999999999999874333                                  


Q ss_pred             ----c----CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 032292           47 ----S----ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  118 (143)
Q Consensus        47 ----~----~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~  118 (143)
                          +    ...++||+||+|+....+..+++.+.++|+|||+++++|++|.|.+.++....+      ....+++|++.
T Consensus       120 ~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~  193 (223)
T 3duw_A          120 LDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDP------RVQGIRRFYEL  193 (223)
T ss_dssp             HHHHHHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCH------HHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccch------HHHHHHHHHHH
Confidence                0    001579999999998899999999999999999999999999998887643211      55679999999


Q ss_pred             hhcCCCeeEEEeec-----CCeeEEEEEcC
Q 032292          119 LADDPRVQLSHVAL-----GDGITICRRIF  143 (143)
Q Consensus       119 l~~~~~~~~~~lp~-----~~Gl~~~~k~~  143 (143)
                      +..+++++++++|+     +||+.++++|.
T Consensus       194 l~~~~~~~~~~~p~~~~~~~dG~~~~~~~~  223 (223)
T 3duw_A          194 IAAEPRVSATALQTVGSKGYDGFIMAVVKE  223 (223)
T ss_dssp             HHHCTTEEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             HhhCCCeEEEEEeccCCCCCCeeEEEEEeC
Confidence            99999999999999     99999999863

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.94  E-value=2.7e-25  Score=166.71  Aligned_cols=136  Identities=30%  Similarity=0.503  Sum_probs=117.8

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |++++..++++..++...++++|||||||+|++++++|+.+++.++                                  
T Consensus        45 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~  124 (248)
T 3tfw_A           45 HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA  124 (248)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4678999999999999989999999999999999999999874333                                  


Q ss_pred             ----cCC--CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 032292           47 ----SEN--EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  120 (143)
Q Consensus        47 ----~~~--~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~  120 (143)
                          +..  .++||+||+|+....+..+++.+.++|+|||+|+++|++|.|.+.++....     . ....+++|++.+.
T Consensus       125 ~~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~-----~-~~~~~~~~~~~l~  198 (248)
T 3tfw_A          125 LQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSAD-----E-RVQGVRQFIEMMG  198 (248)
T ss_dssp             HHHHHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCC-----H-HHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccc-----h-HHHHHHHHHHHHh
Confidence                112  348999999999989999999999999999999999999999988764321     1 5678999999999


Q ss_pred             cCCCeeEEEe-ecC----CeeEEEEEc
Q 032292          121 DDPRVQLSHV-ALG----DGITICRRI  142 (143)
Q Consensus       121 ~~~~~~~~~l-p~~----~Gl~~~~k~  142 (143)
                      .+++|+++++ |++    ||+++++||
T Consensus       199 ~~~~~~~~~l~~~g~~~~DG~~i~~~~  225 (248)
T 3tfw_A          199 AEPRLTATALQTVGTKGWDGFTLAWVN  225 (248)
T ss_dssp             HCTTEEEEEEEECSTTCSEEEEEEEEC
T ss_pred             hCCCEEEEEeecCCCCCCCeeEEEEEe
Confidence            9999999988 776    999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.93  E-value=2.1e-25  Score=164.10  Aligned_cols=136  Identities=42%  Similarity=0.688  Sum_probs=117.5

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |.+++.+++++..++...++++|||||||+|++++++++.+++.++                                  
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            4578899999999999999999999999999999999998764332                                  


Q ss_pred             ----cCC--C---CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292           47 ----SEN--E---GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  117 (143)
Q Consensus        47 ----~~~--~---~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~  117 (143)
                          +..  .   ++||+||+|.....|..+++.+.++|+|||+++++|++|.|.+.++....     . ....+++|++
T Consensus       131 ~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~-----~-~~~~~~~~~~  204 (229)
T 2avd_A          131 LETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGD-----V-AAECVRNLNE  204 (229)
T ss_dssp             HHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTC-----H-HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCC-----h-HHHHHHHHHH
Confidence                000  1   68999999998888999999999999999999999999999987653221     1 5678999999


Q ss_pred             HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          118 SLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       118 ~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      .+..++++.++++|+++|+++++|+
T Consensus       205 ~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          205 RIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             HHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHhhCCCEEEEEEecCCceEEEEEC
Confidence            9999999999999999999999985

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.91  E-value=1.1e-23  Score=156.46  Aligned_cols=136  Identities=41%  Similarity=0.652  Sum_probs=117.6

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |+++|..++++..++...++++|||||||+|+++.++++.+++.++                                  
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            4688999999999999889999999999999999999999764332                                  


Q ss_pred             ----cCC---------------C-CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCccc
Q 032292           47 ----SEN---------------E-GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRG  106 (143)
Q Consensus        47 ----~~~---------------~-~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~  106 (143)
                          +..               . ++||+||+++...++..+++.+.++|+|||++++++++|.|.+.++...     ..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~-----~~  196 (239)
T 2hnk_A          122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ-----EP  196 (239)
T ss_dssp             HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC-----CH
T ss_pred             HHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCcccc-----ch
Confidence                000               2 7899999999888899999999999999999999999999988765422     11


Q ss_pred             chHHHHHHHHHHhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          107 SSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       107 ~~~~~~~~f~~~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                       ....+++|++.+..++++.++++|+++|+.+++|+
T Consensus       197 -~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          197 -STVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             -HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             -HHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence             56679999999999999999999999999999986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.91  E-value=1.2e-23  Score=153.36  Aligned_cols=133  Identities=21%  Similarity=0.285  Sum_probs=108.3

Q ss_pred             CcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------
Q 032292            2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------   46 (143)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------   46 (143)
                      .+++.++.++..++...++++|||||||+|++++++++.+++.++                                   
T Consensus        39 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  118 (210)
T 3c3p_A           39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL  118 (210)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHH
Confidence            367889999999988888999999999999999999998764332                                   


Q ss_pred             ---cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 032292           47 ---SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  123 (143)
Q Consensus        47 ---~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~  123 (143)
                         +...+ ||+||+|+...++..+++.+.++|+|||+++++|++|.|.+.++ .. .+     ....+++|++.+..++
T Consensus       119 ~~~~~~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~-~~-~~-----~~~~~~~~~~~l~~~~  190 (210)
T 3c3p_A          119 GIAAGQRD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAES-HE-DP-----ETAALREFNHHLSRRR  190 (210)
T ss_dssp             HHHTTCCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESSSSCC-------------------CCCHHHHHHTTCT
T ss_pred             HHhccCCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECccccCcccCc-cc-ch-----HHHHHHHHHHHHhhCC
Confidence               22345 99999999888999999999999999999999999999887643 11 11     3345899999999999


Q ss_pred             CeeEEEeecCCeeEEEEEc
Q 032292          124 RVQLSHVALGDGITICRRI  142 (143)
Q Consensus       124 ~~~~~~lp~~~Gl~~~~k~  142 (143)
                      ++.++++|+++|+.+++|+
T Consensus       191 ~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          191 DFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             TEEEEEECSTTCEEEEEEC
T ss_pred             CeEEEEEecCCceEEEEeC
Confidence            9999999999999999987

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.88  E-value=9e-22  Score=144.61  Aligned_cols=121  Identities=23%  Similarity=0.353  Sum_probs=102.0

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |+++++.++++..++...++++|||||||+|++++++|+.+++.++                                  
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            4688999999999999999999999999999999999998764443                                  


Q ss_pred             ----cCCC-----CceeEEEEcCCccchHHH---HHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHH
Q 032292           47 ----SENE-----GSFDYAFVDADKDNYCNY---HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  114 (143)
Q Consensus        47 ----~~~~-----~~fD~v~~d~~~~~~~~~---~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  114 (143)
                          +...     ++||+||+|+....|...   ++.+ ++|+|||+++++|+.+.+                    .++
T Consensus       120 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~--------------------~~~  178 (221)
T 3u81_A          120 QDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPG--------------------TPD  178 (221)
T ss_dssp             HHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCC--------------------CHH
T ss_pred             HHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcc--------------------hHH
Confidence                1122     689999999988777754   4444 999999999999998753                    367


Q ss_pred             HHHHhhcCCCeeEEEee-------cCCeeEEEEEc
Q 032292          115 LNRSLADDPRVQLSHVA-------LGDGITICRRI  142 (143)
Q Consensus       115 f~~~l~~~~~~~~~~lp-------~~~Gl~~~~k~  142 (143)
                      |++.+.++++|+++++|       .++|+.+++++
T Consensus       179 ~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          179 FLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             HHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             HHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            88888899999999999       79999999975

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.87  E-value=5.1e-22  Score=146.72  Aligned_cols=139  Identities=25%  Similarity=0.405  Sum_probs=100.4

Q ss_pred             CcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------
Q 032292            2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------   46 (143)
Q Consensus         2 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------   46 (143)
                      .+.+..++++..++...++.+|||||||+|++++++++.++. ++                                   
T Consensus        37 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           37 IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            367889999999998889999999999999999999998752 22                                   


Q ss_pred             ---cCC--CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 032292           47 ---SEN--EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD  121 (143)
Q Consensus        47 ---~~~--~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~  121 (143)
                         +..  .++||+|+++.....+..+++.+.++|+|||+++++|++|.|.+..++. .+++.+. ....+++|+..+..
T Consensus       116 ~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~  193 (233)
T 2gpy_A          116 QLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDI-EHKRHKQ-LATKIDTYNQWLLE  193 (233)
T ss_dssp             GSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETTTC---------------------------CTTTT
T ss_pred             HHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcCCcCCccCCccc-cccchhH-HHHHHHHHHHHHHh
Confidence               001  4689999999887888999999999999999999999999987765432 1112211 34568899999999


Q ss_pred             CCCeeEEEeecCCeeEEEEEcC
Q 032292          122 DPRVQLSHVALGDGITICRRIF  143 (143)
Q Consensus       122 ~~~~~~~~lp~~~Gl~~~~k~~  143 (143)
                      ++.+.++++|+++|+.+++|++
T Consensus       194 ~~~~~~~~~p~~dG~~~~~~~~  215 (233)
T 2gpy_A          194 HPQYDTRIFPVGDGIAISIKRE  215 (233)
T ss_dssp             CTTEEEEEECSTTCEEEEEEC-
T ss_pred             CCCeEEEEEEcCCeEEEEEEcC
Confidence            9999999999999999999863

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.62  E-value=8.8e-16  Score=112.25  Aligned_cols=106  Identities=12%  Similarity=0.034  Sum_probs=79.1

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      +.+++++++||..  .+.++++||||||  ||||+|||+..  +++                                  
T Consensus        14 ~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~g   87 (202)
T 3cvo_A           14 LTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAELP--GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWT   87 (202)
T ss_dssp             CCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEEC
T ss_pred             ccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence            3578999999998  4458999999998  69999999852  233                                  


Q ss_pred             c---C------------------------C--CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCC
Q 032292           47 S---E------------------------N--EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPE   97 (143)
Q Consensus        47 ~---~------------------------~--~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~   97 (143)
                      +   .                        .  .++||+||+|+++.  ..++..++++|+|||+|++||+.+...     
T Consensus        88 da~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r~~-----  160 (202)
T 3cvo_A           88 DIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDDYSQRRW-----  160 (202)
T ss_dssp             CCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETTGGGCSS-----
T ss_pred             CchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCCcc-----
Confidence            1   1                        1  26799999999876  367778889999999999999765421     


Q ss_pred             CCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe
Q 032292           98 EQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  130 (143)
Q Consensus        98 ~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l  130 (143)
                                 +..+.+|...+...++.-.+.+
T Consensus       161 -----------y~~v~~~~~~~~~~~~~a~f~~  182 (202)
T 3cvo_A          161 -----------QHQVEEFLGAPLMIGRLAAFQV  182 (202)
T ss_dssp             -----------GGGGHHHHCCCEEETTEEEEEE
T ss_pred             -----------hHHHHHHHhHHhhcCceEEEEe
Confidence                       1236888877776666544433

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.58  E-value=7.6e-15  Score=112.25  Aligned_cols=120  Identities=13%  Similarity=0.167  Sum_probs=90.3

Q ss_pred             CcChHHHHHHHHHHhh----cCCCEEEEEeccccHHHHHHHhhCC-----C------C----------------------
Q 032292            2 LLLTIHGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIP-----E------D----------------------   44 (143)
Q Consensus         2 ~~~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~t~~la~~~~-----~------~----------------------   44 (143)
                      +++++.+.+|+.+++.    ..|++|||+||+.|+|+++||+.++     .      +                      
T Consensus        85 mv~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~  164 (282)
T 2wk1_A           85 MIGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALH  164 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGG
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccc
Confidence            3567888888888875    4589999999999999999986642     1      0                      


Q ss_pred             ------------------------Cc------------cC-CCCceeEEEEcCCc-cchHHHHHHHHhcccCCeEEEEec
Q 032292           45 ------------------------GQ------------SE-NEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        45 ------------------------~~------------~~-~~~~fD~v~~d~~~-~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                                              .+            +. ..++||+||+|+++ ..+..+++.+.++|+|||+|++||
T Consensus       165 ~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          165 RRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             GGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             cccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcC
Confidence                                    00            22 24689999999997 456789999999999999999999


Q ss_pred             cCC-CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEeecCCeeEEEEE
Q 032292           87 TLW-GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR  141 (143)
Q Consensus        87 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~lp~~~Gl~~~~k  141 (143)
                      +.+ .|                ..+++++|++..    ++...++++..+..+-+|
T Consensus       245 ~~~~~G----------------~~~Av~Ef~~~~----~i~~~i~~~~~~~v~~rk  280 (282)
T 2wk1_A          245 YMMCPP----------------CKDAVDEYRAKF----DIADELITIDRDGVYWQR  280 (282)
T ss_dssp             CTTCHH----------------HHHHHHHHHHHT----TCCSCCEECSSSCEEEEC
T ss_pred             CCCCHH----------------HHHHHHHHHHhc----CCceEEEEecCEEEEEEe
Confidence            854 22                456788887544    455667788876666555

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.47  E-value=2.8e-13  Score=100.64  Aligned_cols=83  Identities=20%  Similarity=0.247  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh---CCCCCc----------------------------cC-----
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQ----------------------------SE-----   48 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~---~~~~~~----------------------------~~-----   48 (143)
                      |+...++..++...++.+|||||||+|++++++|+.   +.+.++                            ..     
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~  146 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFE  146 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGG
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHH
Confidence            788888888888888899999999999999999987   322222                            11     


Q ss_pred             -CC-CceeEEEEcCCccchHHHHHHHHh-cccCCeEEEEecc
Q 032292           49 -NE-GSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVYDNT   87 (143)
Q Consensus        49 -~~-~~fD~v~~d~~~~~~~~~~~~~~~-~L~~gG~li~d~~   87 (143)
                       .. .+||+|++++.+.++...+.++.+ +|+|||+++++++
T Consensus       147 ~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          147 HLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             GGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence             12 379999999988888899999996 9999999999876

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.26  E-value=4.1e-11  Score=86.87  Aligned_cols=132  Identities=14%  Similarity=0.103  Sum_probs=83.0

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +.+...+++..++...++.+|||||||+|..+..+++..+. ..                                    
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (217)
T 3jwh_A           13 LNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG   91 (217)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC
Confidence            34455667777777778899999999999999999986542 11                                    


Q ss_pred             -----cCCCCceeEEEEcCCcc-----chHHHHHHHHhcccCCeEEEEeccCCCccccC--CC--CCCCCCcccchHHHH
Q 032292           47 -----SENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PE--EQVPDHFRGSSRQAI  112 (143)
Q Consensus        47 -----~~~~~~fD~v~~d~~~~-----~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~--~~--~~~~~~~~~~~~~~~  112 (143)
                           +...++||+|++.....     .....++.+.++|+|||++++......+....  +.  ...+.+...-....+
T Consensus        92 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  171 (217)
T 3jwh_A           92 ALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQF  171 (217)
T ss_dssp             CTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHH
T ss_pred             CcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHH
Confidence                 11125899999876432     34578899999999999887643211111000  00  000111000023457


Q ss_pred             HHHHHHhhcCCCeeEEEeecCCe
Q 032292          113 LDLNRSLADDPRVQLSHVALGDG  135 (143)
Q Consensus       113 ~~f~~~l~~~~~~~~~~lp~~~G  135 (143)
                      +++.+.+....+|+....++++.
T Consensus       172 ~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          172 QNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             HHHHHHHHHHSSEEEEECCCSCC
T ss_pred             HHHHHHHHHHcCceEEEEecCCc
Confidence            77777887788899988877653

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.26  E-value=9.5e-12  Score=96.31  Aligned_cols=112  Identities=21%  Similarity=0.233  Sum_probs=75.6

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDY   55 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~   55 (143)
                      ..++++|||||||+|..+.++++..+. .+                                         +...++||+
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~  184 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESV-EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  184 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTC-CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceE
Confidence            356899999999999999999876432 11                                         112467999


Q ss_pred             EEEcCCc------cch-HHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292           56 AFVDADK------DNY-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  128 (143)
Q Consensus        56 v~~d~~~------~~~-~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~  128 (143)
                      |++|...      ..| ..+++.+.++|+|||+++++.-    .....    +     .....+.++++.+..+..+..+
T Consensus       185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~----~~~~~----~-----~~~~~~~~~l~~vF~~v~~~~~  251 (314)
T 2b2c_A          185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE----SVWLH----L-----PLIAHLVAFNRKIFPAVTYAQS  251 (314)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECC----CTTTC----H-----HHHHHHHHHHHHHCSEEEEEEE
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC----CcccC----H-----HHHHHHHHHHHHHCCcceEEEE
Confidence            9998732      113 5788999999999999998751    11100    0     0345577777777656666677


Q ss_pred             Eeec---CC-eeEEEEEc
Q 032292          129 HVAL---GD-GITICRRI  142 (143)
Q Consensus       129 ~lp~---~~-Gl~~~~k~  142 (143)
                      .+|.   |+ |+.++.|+
T Consensus       252 ~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          252 IVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             ECTTSGGGEEEEEEEESS
T ss_pred             EecCcCCCceEEEEEeCC
Confidence            7787   45 88888764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.25  E-value=5.7e-12  Score=93.39  Aligned_cols=82  Identities=20%  Similarity=0.235  Sum_probs=59.1

Q ss_pred             HHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCc
Q 032292           10 LMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGS   52 (143)
Q Consensus        10 ~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~   52 (143)
                      ++..++..  .++.+|||||||+|+++.++++..+..-.                                   ...+++
T Consensus        49 ~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  128 (236)
T 3orh_A           49 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGH  128 (236)
T ss_dssp             HHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTC
T ss_pred             HHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccC
Confidence            34444433  35689999999999999999887543100                                   245678


Q ss_pred             eeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEEeccCCCc
Q 032292           53 FDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNTLWGG   91 (143)
Q Consensus        53 fD~v~~d~~~--------~~~~~~~~~~~~~L~~gG~li~d~~~~~g   91 (143)
                      ||.|+.|...        .+...+++++.++|||||++++.+....+
T Consensus       129 FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~  175 (236)
T 3orh_A          129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  175 (236)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             CceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCch
Confidence            9999988642        23456788999999999999987755443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.25  E-value=1.9e-11  Score=94.17  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=78.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDYA   56 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~v   56 (143)
                      .++++|||||||+|..+.++++..+. .+                                         +...++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSV-ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            47899999999999999999887432 11                                         1235689999


Q ss_pred             EEcCCcc-------chHHHHHHHHhcccCCeEEEEec-cCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292           57 FVDADKD-------NYCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  128 (143)
Q Consensus        57 ~~d~~~~-------~~~~~~~~~~~~L~~gG~li~d~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~  128 (143)
                      ++|....       .+..+++.+.++|+|||++++++ ..|...             . ....++++++.+..+.++..+
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~-------------~-~~~~~~~~l~~~f~~v~~~~~  238 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHL-------------D-LIKEMRQFCQSLFPVVAYAYC  238 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCH-------------H-HHHHHHHHHHHHCSEEEEEEE
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccch-------------H-HHHHHHHHHHHhCCCceeEEE
Confidence            9997542       13467899999999999999976 333210             0 445688888888776677767


Q ss_pred             Eeec---C-CeeEEEEEc
Q 032292          129 HVAL---G-DGITICRRI  142 (143)
Q Consensus       129 ~lp~---~-~Gl~~~~k~  142 (143)
                      .+|.   | +|+.++.|.
T Consensus       239 ~vP~~~~g~~g~~~as~~  256 (304)
T 2o07_A          239 TIPTYPSGQIGFMLCSKN  256 (304)
T ss_dssp             ECTTSGGGEEEEEEEESS
T ss_pred             EeccccCcceEEEEEeCC
Confidence            7787   3 588888753

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.23  E-value=8.1e-11  Score=93.85  Aligned_cols=123  Identities=15%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             CCCEEEEEecc------ccHHHHHHHhhCCCCCc---------------------------cCC------CCceeEEEEc
Q 032292           19 NAKKTIEIGVF------TGYSLLLTALTIPEDGQ---------------------------SEN------EGSFDYAFVD   59 (143)
Q Consensus        19 ~~~~vLeiG~g------~G~~t~~la~~~~~~~~---------------------------~~~------~~~fD~v~~d   59 (143)
                      ++.+|||||||      +|..++.+++...+.++                           +..      .++||+|+++
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisd  295 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDD  295 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEEC
Confidence            67999999999      77778887766422232                           111      4789999999


Q ss_pred             CCc--cchHHHHHHHHhcccCCeEEEEeccCCCcc-ccCCCCCCCCCcccchHHHHHHHHHHhhcC---------CCee-
Q 032292           60 ADK--DNYCNYHERLMKLLKVGGIAVYDNTLWGGT-VAVPEEQVPDHFRGSSRQAILDLNRSLADD---------PRVQ-  126 (143)
Q Consensus        60 ~~~--~~~~~~~~~~~~~L~~gG~li~d~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~---------~~~~-  126 (143)
                      +.+  .++...|+++.++|||||+++++|+...-. ............++ ....++++.+.+...         |.+. 
T Consensus       296 gsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~t-ii~~lk~l~D~l~~~~~~~~~~~~~~~~~  374 (419)
T 3sso_A          296 GSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGT-SLGLLKSLIDAIQHQELPSDPNRSPGYVD  374 (419)
T ss_dssp             SCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTS-HHHHHHHHHHHHTGGGSCCCTTCCCCHHH
T ss_pred             CcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhH-HHHHHHHHHHHhcccccCCCcCCCCCccc
Confidence            865  345678999999999999999998873211 00000000112233 666788888776531         1121 


Q ss_pred             --EEEeecCCeeEEEEEc
Q 032292          127 --LSHVALGDGITICRRI  142 (143)
Q Consensus       127 --~~~lp~~~Gl~~~~k~  142 (143)
                        ..-+.+-+++.+..|+
T Consensus       375 ~~~~~~h~y~~i~~~~kg  392 (419)
T 3sso_A          375 RNIVGLHVYHNVAFVEKG  392 (419)
T ss_dssp             HHEEEEEEETTEEEEEES
T ss_pred             cceeEEEecCcEEEEEec
Confidence              2335667888888875

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.23  E-value=1.1e-10  Score=84.67  Aligned_cols=131  Identities=18%  Similarity=0.087  Sum_probs=81.1

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------   46 (143)
                      .+...+++..++...++.+|||||||+|..+..+++..+. .+                                     
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (219)
T 3jwg_A           14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS   92 (219)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred             hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence            3455566666666678899999999999999999987642 11                                     


Q ss_pred             ----cCCCCceeEEEEcCCcc-----chHHHHHHHHhcccCCeEEEEeccCCCccccC--CC--CCCCCCcccchHHHHH
Q 032292           47 ----SENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PE--EQVPDHFRGSSRQAIL  113 (143)
Q Consensus        47 ----~~~~~~fD~v~~d~~~~-----~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~--~~--~~~~~~~~~~~~~~~~  113 (143)
                          +...++||+|++.....     .....++.+.+.|+|||++++......+....  +.  ...+.+...-....++
T Consensus        93 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  172 (219)
T 3jwg_A           93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQ  172 (219)
T ss_dssp             SSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHH
T ss_pred             ccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHH
Confidence                11235899999875432     22467899999999999887642221111110  00  0000110000234577


Q ss_pred             HHHHHhhcCCCeeEEEeecCCe
Q 032292          114 DLNRSLADDPRVQLSHVALGDG  135 (143)
Q Consensus       114 ~f~~~l~~~~~~~~~~lp~~~G  135 (143)
                      ++.+.+....+|+....+++++
T Consensus       173 ~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          173 TWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             HHHHHHHHHHTEEEEEEEESCC
T ss_pred             HHHHHHHHHCCcEEEEEecCCc
Confidence            7777777677898888876644

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.20  E-value=1.2e-10  Score=83.67  Aligned_cols=81  Identities=16%  Similarity=0.169  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------c-----CC
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------S-----EN   49 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~-----~~   49 (143)
                      +....+...+...+..+|||+|||+|..++.+++..+. ++                               .     ..
T Consensus        27 ~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  105 (204)
T 3e05_A           27 EVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD  105 (204)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc
Confidence            33344444555667889999999999999999998753 22                               0     11


Q ss_pred             CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .++||+|+++....++...++.+.+.|+|||++++...
T Consensus       106 ~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          106 LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            26799999998766788999999999999999998644

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.14  E-value=7.3e-10  Score=78.23  Aligned_cols=99  Identities=12%  Similarity=0.058  Sum_probs=62.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------c---CCCCceeEEEEcC-C
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------S---ENEGSFDYAFVDA-D   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~---~~~~~fD~v~~d~-~   61 (143)
                      .+..+|||+|||+|..+..+++. .....                                .   ..+++||+|+++. .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~   99 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY   99 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence            45789999999999999999987 21000                                1   3357899999872 1


Q ss_pred             c-----------cchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEe
Q 032292           62 K-----------DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  130 (143)
Q Consensus        62 ~-----------~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~l  130 (143)
                      .           ......++.+.++|+|||++++.  .|.+.....     +     ....+.++...+. ...|....+
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~--~~~~~~~~~-----~-----~~~~~~~~~~~l~-~~~~~~~~~  166 (185)
T 3mti_A          100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM--IYYGHDGGD-----M-----EKDAVLEYVIGLD-QRVFTAMLY  166 (185)
T ss_dssp             ----------CHHHHHHHHHHHHHHEEEEEEEEEE--EC------C-----H-----HHHHHHHHHHHSC-TTTEEEEEE
T ss_pred             CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE--EeCCCCCCH-----H-----HHHHHHHHHHhCC-CceEEEEEe
Confidence            1           22345678899999999999873  343321100     0     3345677776664 334665544

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.11  E-value=3e-10  Score=87.68  Aligned_cols=112  Identities=13%  Similarity=0.097  Sum_probs=73.3

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------------cCCCCcee
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------------SENEGSFD   54 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------------~~~~~~fD   54 (143)
                      ..++++|||||||+|..+..+++..+. .+                                          +...++||
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTV-EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc
Confidence            357899999999999999999886432 11                                          11246799


Q ss_pred             EEEEcCCccc----------hHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCC
Q 032292           55 YAFVDADKDN----------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPR  124 (143)
Q Consensus        55 ~v~~d~~~~~----------~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~  124 (143)
                      +|++|.....          ...+++.+.++|+|||++++..    +.....  . ++     ....+.+.++.+..+..
T Consensus       154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~----~~~~~~--~-~~-----~~~~~~~~l~~~F~~v~  221 (314)
T 1uir_A          154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT----GMILLT--H-HR-----VHPVVHRTVREAFRYVR  221 (314)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE----EEECC------C-----HHHHHHHHHHTTCSEEE
T ss_pred             EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc----cCcccc--C-HH-----HHHHHHHHHHHHCCceE
Confidence            9999975432          4678999999999999998852    111100  0 01     34445555555544444


Q ss_pred             eeEEEeecCCe---eEEEEE
Q 032292          125 VQLSHVALGDG---ITICRR  141 (143)
Q Consensus       125 ~~~~~lp~~~G---l~~~~k  141 (143)
                      +..+.+|..+|   +.++.|
T Consensus       222 ~~~~~vP~~~g~~~~~~as~  241 (314)
T 1uir_A          222 SYKNHIPGFFLNFGFLLASD  241 (314)
T ss_dssp             EEEEEEGGGTEEEEEEEEES
T ss_pred             EEEEecCCCCCeEEEEEEEC
Confidence            55566788655   566665

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.11  E-value=1.8e-10  Score=85.11  Aligned_cols=86  Identities=20%  Similarity=0.235  Sum_probs=62.0

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SEN   49 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~   49 (143)
                      .+...+.+...+...++.+|||||||+|..+..+++..+....                                  ...
T Consensus        21 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~  100 (256)
T 1nkv_A           21 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA  100 (256)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc
Confidence            3444555555555667789999999999999999987642110                                  011


Q ss_pred             CCceeEEEEcCCc---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           50 EGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        50 ~~~fD~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .++||+|++....   .+....++++.++|+|||.+++.+..+
T Consensus       101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A          101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            5789999986532   346788999999999999999865443

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.10  E-value=1.1e-10  Score=86.30  Aligned_cols=80  Identities=19%  Similarity=0.239  Sum_probs=59.9

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCcee
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFD   54 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD   54 (143)
                      ++..+....++.+|||||||+|..+..+++..+....                                   +...++||
T Consensus        37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD  116 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELD  116 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEE
T ss_pred             HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEE
Confidence            3333334456789999999999999999998762100                                   22357899


Q ss_pred             EEEEcCCc--cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           55 YAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        55 ~v~~d~~~--~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      +|++....  .+....++.+.++|+|||++++.+..|
T Consensus       117 ~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  153 (257)
T 3f4k_A          117 LIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASW  153 (257)
T ss_dssp             EEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             EEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            99987532  257788999999999999999876544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.10  E-value=3.9e-10  Score=84.98  Aligned_cols=79  Identities=14%  Similarity=0.213  Sum_probs=56.4

Q ss_pred             HHHHHHh--hcCCCEEEEEeccccHHHHHHHhhCCCCC-c-----------------------------------cCCCC
Q 032292           10 LMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDG-Q-----------------------------------SENEG   51 (143)
Q Consensus        10 ~l~~l~~--~~~~~~vLeiG~g~G~~t~~la~~~~~~~-~-----------------------------------~~~~~   51 (143)
                      ++..++.  ..+..+|||+|||+|..+..+++.++..+ +                                   ....+
T Consensus        59 ~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~  138 (261)
T 4gek_A           59 MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE  138 (261)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC
T ss_pred             HHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc
Confidence            3444443  34668999999999999999998875322 2                                   12346


Q ss_pred             ceeEEEEcCCcc-----chHHHHHHHHhcccCCeEEEEeccC
Q 032292           52 SFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        52 ~fD~v~~d~~~~-----~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +||+|++.....     +....++++.+.|+|||++++.+..
T Consensus       139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            799999865322     2345789999999999999886543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.10  E-value=1.7e-10  Score=88.62  Aligned_cols=73  Identities=14%  Similarity=0.065  Sum_probs=57.2

Q ss_pred             HHHhhcCCCEEEEEeccccH-HHHHHHhhCCCCCc----------------------------------cCCCCceeEEE
Q 032292           13 MLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQ----------------------------------SENEGSFDYAF   57 (143)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~-~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~   57 (143)
                      .++...++.+|||||||+|. +++.+|+...  ++                                  ....++||+||
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~  193 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLM  193 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEE
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEE
Confidence            36677889999999999985 4566665432  22                                  11257899999


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           58 VDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +++...++...++++.+.|||||++++.+.
T Consensus       194 ~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          194 VAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             ECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            988878888999999999999999998763

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.09  E-value=1.9e-10  Score=85.68  Aligned_cols=69  Identities=13%  Similarity=0.166  Sum_probs=56.7

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d   59 (143)
                      +.+..+|||+|||+|+.+..+|+.++++|+                                     +...+++|+||+|
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            356799999999999999999999877665                                     2345789999998


Q ss_pred             CCcc-chHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKD-NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~-~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .... +....+.++.+.|||||.+++.
T Consensus       155 ~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          155 VAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             CCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            7554 3456788999999999998874

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.08  E-value=6.5e-10  Score=86.68  Aligned_cols=81  Identities=26%  Similarity=0.375  Sum_probs=58.9

Q ss_pred             HHHHHHHh--hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------
Q 032292            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------   46 (143)
Q Consensus         9 ~~l~~l~~--~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------   46 (143)
                      ++|..++.  ..++++|||||||+|..+..+++..+. .+                                        
T Consensus       108 e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~~-~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~  186 (334)
T 1xj5_A          108 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASI-EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF  186 (334)
T ss_dssp             HHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH
Confidence            34444432  347899999999999999999986432 11                                        


Q ss_pred             -cC-CCCceeEEEEcCCcc----c---hHHHHHHHHhcccCCeEEEEe-ccCCC
Q 032292           47 -SE-NEGSFDYAFVDADKD----N---YCNYHERLMKLLKVGGIAVYD-NTLWG   90 (143)
Q Consensus        47 -~~-~~~~fD~v~~d~~~~----~---~~~~~~~~~~~L~~gG~li~d-~~~~~   90 (143)
                       +. ..++||+|++|....    .   +..+++.+.++|+|||+++++ +..|.
T Consensus       187 l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~  240 (334)
T 1xj5_A          187 LKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWL  240 (334)
T ss_dssp             HHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT
T ss_pred             HHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccc
Confidence             11 246899999986421    1   467899999999999999997 55554

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.07  E-value=2.3e-10  Score=86.48  Aligned_cols=75  Identities=17%  Similarity=0.247  Sum_probs=58.5

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEc
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d   59 (143)
                      +....++.+|||||||+|..+..+++.++...+                                  ....++||+|++.
T Consensus        17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~   96 (284)
T 3gu3_A           17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICH   96 (284)
T ss_dssp             TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEE
T ss_pred             HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEEC
Confidence            334567899999999999999999998764222                                  1124689999997


Q ss_pred             CCc---cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           60 ADK---DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        60 ~~~---~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ...   .+....++++.++|+|||++++.+..
T Consensus        97 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           97 AFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            642   45678899999999999999976655

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.06  E-value=4e-10  Score=78.73  Aligned_cols=78  Identities=19%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------c--------------CCCC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------S--------------ENEG   51 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------~--------------~~~~   51 (143)
                      +.+...+...+..+|||+|||+|..+..+++..+. .+                       .              ...+
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~   93 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPD   93 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSS-EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCS
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCC
Confidence            33334444556779999999999999999988643 11                       0              0117


Q ss_pred             ceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +||+|++...... ...++.+.++|+|||++++....
T Consensus        94 ~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           94 NPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             CCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             CCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence            8999998875443 67889999999999999986543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.06  E-value=4.4e-10  Score=83.27  Aligned_cols=81  Identities=22%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S   47 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~   47 (143)
                      .+.....+...+...++.+|||+|||+|..+..+++.+.+.++                                    .
T Consensus        78 ~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  157 (255)
T 3mb5_A           78 HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG  157 (255)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred             cHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence            4556667777777778899999999999999999998433222                                    2


Q ss_pred             CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...++||+|+++..  +....++.+.+.|+|||++++..
T Consensus       158 ~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          158 IEEENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             CCCCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            23567999999753  45667899999999999998753

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.05  E-value=5.6e-10  Score=81.38  Aligned_cols=67  Identities=16%  Similarity=0.156  Sum_probs=51.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c----CCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S----ENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~----~~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..+..+++..+ .++                                 +    ...++||+|+++.
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  134 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI  134 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec
Confidence            4567999999999999999998875 222                                 0    1136799999986


Q ss_pred             CccchH-HHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYC-NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~-~~~~~~~~~L~~gG~li~d   85 (143)
                      ....-. ..++++.++|||||.+++.
T Consensus       135 ~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          135 AQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            443323 3488999999999999885

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.05  E-value=1.5e-09  Score=78.64  Aligned_cols=80  Identities=15%  Similarity=0.057  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c--CCC
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S--ENE   50 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~--~~~   50 (143)
                      +....+...+...+..+|||+|||+|..++.+|+. .....                                 .  ...
T Consensus        42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~  120 (204)
T 3njr_A           42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL  120 (204)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC
Confidence            44444445555667789999999999999999987 21100                                 0  113


Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ++||+||++... +.. .++.+.+.|+|||++++....
T Consensus       121 ~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          121 PLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             CCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            479999998744 445 899999999999999986543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.04  E-value=4.2e-10  Score=84.67  Aligned_cols=76  Identities=14%  Similarity=0.110  Sum_probs=56.1

Q ss_pred             HHHHHHhhc-CCCEEEEEeccccHHHHHHHhhCCC------C------Cc---------------cCCCCceeEEEEcCC
Q 032292           10 LMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPE------D------GQ---------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        10 ~l~~l~~~~-~~~~vLeiG~g~G~~t~~la~~~~~------~------~~---------------~~~~~~fD~v~~d~~   61 (143)
                      ++..|.... ...+|||||||+|..+..|++....      +      ++               +..+++||+|++...
T Consensus        29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~  108 (257)
T 4hg2_A           29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQA  108 (257)
T ss_dssp             HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSC
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeee
Confidence            445555443 3579999999999999999987532      0      00               345789999998643


Q ss_pred             c--cchHHHHHHHHhcccCCeEEEEe
Q 032292           62 K--DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ~--~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .  .+....+.++.++|||||+|++-
T Consensus       109 ~h~~~~~~~~~e~~rvLkpgG~l~~~  134 (257)
T 4hg2_A          109 MHWFDLDRFWAELRRVARPGAVFAAV  134 (257)
T ss_dssp             CTTCCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhHhhHHHHHHHHHHHcCCCCEEEEE
Confidence            2  35677899999999999999763

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.04  E-value=2.1e-09  Score=77.57  Aligned_cols=75  Identities=15%  Similarity=0.196  Sum_probs=57.6

Q ss_pred             HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEE
Q 032292           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~   58 (143)
                      ....+..+|||+|||+|..+..+++..++..+                                    +...++||+|++
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  112 (219)
T 3dh0_A           33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFM  112 (219)
T ss_dssp             HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEE
T ss_pred             hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEe
Confidence            34556789999999999999999988733222                                    223578999998


Q ss_pred             cCCc---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           59 DADK---DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        59 d~~~---~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ....   .+....++.+.++|+|||++++.+...
T Consensus       113 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          113 AFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             ESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence            7643   356778999999999999999865443

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.04  E-value=5.5e-10  Score=82.44  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCC---CCceeEEEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SEN---EGSFDYAFV   58 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~---~~~fD~v~~   58 (143)
                      .++.+|||||||+|+.++.+|...+. ++                                    +..   .++||+|++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            36789999999999999999976542 22                                    111   478999999


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++ ..++...++.+.++|+|||++++.
T Consensus       148 ~~-~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          148 RA-VARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence            88 467888999999999999999874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.03  E-value=3.8e-09  Score=75.24  Aligned_cols=69  Identities=14%  Similarity=0.184  Sum_probs=52.9

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c-CCCCceeEEEE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S-ENEGSFDYAFV   58 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~-~~~~~fD~v~~   58 (143)
                      ..+..+|||+|||+|..+..+++.+++.++                                     . ...++||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            346689999999999999999998643222                                     1 34578999998


Q ss_pred             cCCc------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           59 DADK------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        59 d~~~------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +...            ..+...++.+.++|+|||++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~  138 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV  138 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence            7521            13456899999999999999874

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.03  E-value=3.3e-10  Score=84.59  Aligned_cols=71  Identities=21%  Similarity=0.246  Sum_probs=55.8

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d   59 (143)
                      ..++.+|||||||+|..+..+++. +. ++                                     +...++||+|++.
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~  121 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VT-GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE  121 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CS-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEES
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cC-CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEc
Confidence            456789999999999999999987 32 11                                     2235789999987


Q ss_pred             CCc--cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           60 ADK--DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        60 ~~~--~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ...  .+....++.+.++|+|||++++.+..+
T Consensus       122 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          122 GAIYNIGFERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             SCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             CCceecCHHHHHHHHHHHcCCCCEEEEEEeee
Confidence            642  256788999999999999999877654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.01  E-value=2e-09  Score=81.79  Aligned_cols=111  Identities=14%  Similarity=-0.002  Sum_probs=71.5

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------cC----------------------------C--C
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------SE----------------------------N--E   50 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------~~----------------------------~--~   50 (143)
                      ..++++|||||||+|..+..+++. +. .+                ..                            .  .
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~-~~-~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~  150 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH-DV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  150 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-CC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhccc
Confidence            457899999999999999999876 32 11                00                            0  4


Q ss_pred             CceeEEEEcCCcc-----c--hHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 032292           51 GSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  123 (143)
Q Consensus        51 ~~fD~v~~d~~~~-----~--~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~  123 (143)
                      ++||+|++|....     .  ...+++.+.++|+|||+++++...    ....    ++     ....+.++...+..+.
T Consensus       151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~----~~~~----~~-----~~~~~~~~l~~~f~~v  217 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS----VYLF----TD-----ELISAYKEMKKVFDRV  217 (281)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE----TTTS----HH-----HHHHHHHHHHHHCSEE
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC----cccC----HH-----HHHHHHHHHHHHCCce
Confidence            5799999997521     1  367889999999999999986211    1000    00     3334555555554344


Q ss_pred             CeeEEEeecCCe---eEEEEEc
Q 032292          124 RVQLSHVALGDG---ITICRRI  142 (143)
Q Consensus       124 ~~~~~~lp~~~G---l~~~~k~  142 (143)
                      .+..+.+|..+|   +.++.|.
T Consensus       218 ~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          218 YYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             EEEEECCTTSSSSEEEEEEEES
T ss_pred             EEEEEecCCCCceEEEEEeeCC
Confidence            445556787644   6777763

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.01  E-value=2.3e-09  Score=76.18  Aligned_cols=70  Identities=11%  Similarity=0.060  Sum_probs=51.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c-CCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S-ENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~-~~~~~fD~v~~d~~   61 (143)
                      .++.+|||+|||+|..++.+++.-.....                                   . ...++||+|+++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            46789999999999999987764221000                                   1 22678999999864


Q ss_pred             cc----chHHHHHHHHh--cccCCeEEEEecc
Q 032292           62 KD----NYCNYHERLMK--LLKVGGIAVYDNT   87 (143)
Q Consensus        62 ~~----~~~~~~~~~~~--~L~~gG~li~d~~   87 (143)
                      ..    .+...++.+.+  +|+|||+++++..
T Consensus       123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          123 YNVDSADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             CCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence            32    35677888888  9999999998643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.00  E-value=7.7e-10  Score=82.25  Aligned_cols=69  Identities=17%  Similarity=0.220  Sum_probs=52.6

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c----CCCCceeEEEEc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S----ENEGSFDYAFVD   59 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~----~~~~~fD~v~~d   59 (143)
                      ..+..+|||+|||+|+.|..+|+.+.+.|+                                 +    ...++||+||+|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence            456789999999999999999988765444                                 0    123689999999


Q ss_pred             CCccchHHHHH-HHHhcccCCeEEEEe
Q 032292           60 ADKDNYCNYHE-RLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~~~~~~~~-~~~~~L~~gG~li~d   85 (143)
                      ....+....+. .+.+.|||||.+++.
T Consensus       154 ~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          154 IAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             CCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            87655555544 444599999999875

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.99  E-value=5.2e-10  Score=82.25  Aligned_cols=79  Identities=19%  Similarity=0.241  Sum_probs=53.5

Q ss_pred             HHHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCCC--Cc---------------------------------cCCCC
Q 032292            9 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPED--GQ---------------------------------SENEG   51 (143)
Q Consensus         9 ~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~~--~~---------------------------------~~~~~   51 (143)
                      .++..++..  .+..+|||||||+|..+..+++.....  +.                                 +..++
T Consensus        48 ~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~  127 (236)
T 1zx0_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDG  127 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTT
T ss_pred             HHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCC
Confidence            344444433  456799999999999999997643210  00                                 13357


Q ss_pred             ceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEEecc
Q 032292           52 SFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        52 ~fD~v~~d~~~--------~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +||+|++|...        ......++++.++|||||++++-+.
T Consensus       128 ~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          128 HFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             ceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            89999994321        1122458889999999999987554

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.99  E-value=7.2e-10  Score=79.77  Aligned_cols=79  Identities=27%  Similarity=0.300  Sum_probs=57.2

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------------cCCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------------SENE   50 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------------~~~~   50 (143)
                      .+.....+...+...++.+|||||||+|+.+..+++.... .+.                                ....
T Consensus        62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  141 (210)
T 3lbf_A           62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR  141 (210)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence            4555566666666677899999999999999999987321 000                                1124


Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++||+|+++.......   +.+.++|+|||++++.
T Consensus       142 ~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          142 APFDAIIVTAAPPEIP---TALMTQLDEGGILVLP  173 (210)
T ss_dssp             CCEEEEEESSBCSSCC---THHHHTEEEEEEEEEE
T ss_pred             CCccEEEEccchhhhh---HHHHHhcccCcEEEEE
Confidence            6899999987654433   3678999999999874

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.99  E-value=1.5e-09  Score=80.89  Aligned_cols=81  Identities=12%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             HHHHHHHh---hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCC
Q 032292            9 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENE   50 (143)
Q Consensus         9 ~~l~~l~~---~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~   50 (143)
                      +++..++.   ..++.+|||||||+|..+..+++..+....                                   +...
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            34444443   346789999999999999999986531100                                   2235


Q ss_pred             CceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           51 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        51 ~~fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ++||+|++...   ..+....++++.++|+|||++++.+...
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence            78999998653   2456788999999999999999876543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.98  E-value=1.6e-09  Score=79.12  Aligned_cols=79  Identities=13%  Similarity=0.130  Sum_probs=59.0

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CC-----------------c----------cCCCCceeEEEEcC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DG-----------------Q----------SENEGSFDYAFVDA   60 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~-----------------~----------~~~~~~fD~v~~d~   60 (143)
                      .++..+....++.+|||||||+|..+..+++..+. .+                 .          ...+++||+|++..
T Consensus        32 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  111 (250)
T 2p7i_A           32 FMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTH  111 (250)
T ss_dssp             HHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEES
T ss_pred             HHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhh
Confidence            34555555567889999999999999999876542 00                 0          12457899999876


Q ss_pred             Cc---cchHHHHHHHH-hcccCCeEEEEecc
Q 032292           61 DK---DNYCNYHERLM-KLLKVGGIAVYDNT   87 (143)
Q Consensus        61 ~~---~~~~~~~~~~~-~~L~~gG~li~d~~   87 (143)
                      ..   .+....++++. ++|+|||++++...
T Consensus       112 ~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          112 VLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            42   35678899999 99999999988653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.98  E-value=1.7e-09  Score=80.31  Aligned_cols=76  Identities=13%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             HHHHhhcCCCEEEEEeccccHHHHHHHhhCCC------C--------------C---c----------cCCCCceeEEEE
Q 032292           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------D--------------G---Q----------SENEGSFDYAFV   58 (143)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~------~--------------~---~----------~~~~~~fD~v~~   58 (143)
                      ...+...++.+|||||||+|..+..+++..+.      +              +   .          +..+++||+|++
T Consensus        30 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~  109 (260)
T 1vl5_A           30 MQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTC  109 (260)
T ss_dssp             HHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEE
T ss_pred             HHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEE
Confidence            33344557899999999999999999877531      0              0   0          234578999998


Q ss_pred             cCCc---cchHHHHHHHHhcccCCeEEEEecc
Q 032292           59 DADK---DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        59 d~~~---~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ....   .+....++++.++|+|||++++.+.
T Consensus       110 ~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          110 RIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            7532   4567889999999999999988543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.97  E-value=2.9e-09  Score=74.74  Aligned_cols=82  Identities=17%  Similarity=0.118  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC------C-----------------Cc---------c-CCC-
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------D-----------------GQ---------S-ENE-   50 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~------~-----------------~~---------~-~~~-   50 (143)
                      ......+...+...++.+|||+|||+|..+..+++....      +                 ..         . ... 
T Consensus        19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   98 (192)
T 1l3i_A           19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI   98 (192)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence            344455555556667889999999999999999876411      0                 00         0 112 


Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ++||+|+++....+....++.+.++|+|||.+++..
T Consensus        99 ~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A           99 PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            589999998765677889999999999999998854

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.97  E-value=1.2e-09  Score=82.97  Aligned_cols=72  Identities=11%  Similarity=0.091  Sum_probs=55.1

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEEEEcCCc---
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYAFVDADK---   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v~~d~~~---   62 (143)
                      .+..+|||||||+|..+..+++..+....                                ....++||+|++....   
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~~~  150 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHF  150 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGT
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHHhc
Confidence            45679999999999999999988542110                                1126789999987532   


Q ss_pred             ---------cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           63 ---------DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        63 ---------~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                               .++..+++++.++|+|||++++.+...
T Consensus       151 ~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          151 ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             TCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             CccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence                     234688999999999999999876654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.97  E-value=2.9e-09  Score=80.73  Aligned_cols=68  Identities=19%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDYA   56 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~v   56 (143)
                      .++++|||||||+|..+..+++..+. .+                                         +...++||+|
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSV-KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTC-SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCC-ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            46899999999999999999876432 11                                         1124689999


Q ss_pred             EEcCCccc-------hHHHHHHHHhcccCCeEEEEec
Q 032292           57 FVDADKDN-------YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        57 ~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ++|.....       -.++++.+.++|+|||++++..
T Consensus       153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            99875321       1568999999999999999863

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.97  E-value=3.5e-09  Score=77.94  Aligned_cols=84  Identities=17%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC-Cc--------------------------------cCCCC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-GQ--------------------------------SENEG   51 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~-~~--------------------------------~~~~~   51 (143)
                      +....-+..+....+..+|||||||+|..+..+++..+.- +.                                +..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   86 (239)
T 1xxl_A            7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   86 (239)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence            3444445555567788999999999999999998775310 00                                23357


Q ss_pred             ceeEEEEcCCc---cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           52 SFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        52 ~fD~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +||+|++....   .+....++++.++|+|||++++.+..
T Consensus        87 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           87 SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            89999987532   45678899999999999999885443

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.96  E-value=2.2e-09  Score=81.02  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=49.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~~   61 (143)
                      .++++|||||||+|..+..+++. +....                                    ... ++||+|++|..
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d~~  148 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCLQE  148 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEESSC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEECCC
Confidence            46789999999999999998876 41000                                    001 57999999974


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEe
Q 032292           62 KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .  ...+++.+.+.|+|||++++.
T Consensus       149 d--p~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          149 P--DIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             C--CHHHHHHHHTTEEEEEEEEEE
T ss_pred             C--hHHHHHHHHHhcCCCcEEEEE
Confidence            3  345889999999999999885

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.96  E-value=5.6e-09  Score=74.86  Aligned_cols=80  Identities=14%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCC
Q 032292            7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEG   51 (143)
Q Consensus         7 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~   51 (143)
                      ...++..+.. ..+..+|||+|||+|..+..+++. +. .+                                  ....+
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  124 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-GA-KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDG  124 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCS
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCC
Confidence            3344555544 345789999999999999998874 22 11                                  22357


Q ss_pred             ceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +||+|+++.....+...++.+.++|+|||++++.+..
T Consensus       125 ~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          125 KFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             CEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             CceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            8999999876656667788888999999999985443

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.95  E-value=9.8e-10  Score=82.17  Aligned_cols=71  Identities=24%  Similarity=0.207  Sum_probs=56.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~~   61 (143)
                      .++.+|||||||+|..+..+++..+. .+                                    +...++||+|++...
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            46789999999999999999998653 11                                    234678999998753


Q ss_pred             c---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           62 K---DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        62 ~---~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .   .+....++.+.++|+|||++++.+..+
T Consensus       115 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          115 LEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             hhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            2   356688999999999999999865443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.95  E-value=1.9e-09  Score=81.47  Aligned_cols=74  Identities=12%  Similarity=0.170  Sum_probs=56.1

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcC
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~   60 (143)
                      ...++.+|||||||+|..+..+++..+....                                   +..+++||+|++..
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  158 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  158 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence            4456789999999999999999987432100                                   22357899999875


Q ss_pred             Cc---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           61 DK---DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        61 ~~---~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ..   .+....++++.++|+|||++++.+...
T Consensus       159 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          159 AFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            32   356788999999999999999876543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.95  E-value=1.4e-09  Score=78.57  Aligned_cols=78  Identities=29%  Similarity=0.350  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SEN   49 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~   49 (143)
                      +.....+..++...+..+|||||||+|+.+..+++..++.++                                   ...
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  142 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE  142 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence            455555555566667889999999999999999988742221                                   111


Q ss_pred             -CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           50 -EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 -~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                       .++||+|+++.......   +.+.++|+|||.+++.
T Consensus       143 ~~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          143 PLAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             GGCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CCCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEE
Confidence             46799999987554433   4778999999999874

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.95  E-value=1.4e-09  Score=80.00  Aligned_cols=81  Identities=15%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhhc----CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cC
Q 032292            7 HGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SE   48 (143)
Q Consensus         7 ~~~~l~~l~~~~----~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~   48 (143)
                      ...++..++...    ++.+|||||||+|..+..+++.......                                  +.
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~  142 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP  142 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC
Confidence            445566655443    4789999999999999998876521100                                  12


Q ss_pred             CCCceeEEEEcCCcc-----chHHHHHHHHhcccCCeEEEEecc
Q 032292           49 NEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        49 ~~~~fD~v~~d~~~~-----~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ..++||+|+++....     .+...++++.++|+|||++++.+.
T Consensus       143 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          143 EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            345899999986432     244788999999999999988543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.94  E-value=2.2e-09  Score=76.92  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC--Cc---------------------------------cCCCCceeEEEEcCCc-
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED--GQ---------------------------------SENEGSFDYAFVDADK-   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~--~~---------------------------------~~~~~~fD~v~~d~~~-   62 (143)
                      ++.+|||+|||+|..+..+++.....  +.                                 +...++||+|++.... 
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~  122 (219)
T 3dlc_A           43 TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVF  122 (219)
T ss_dssp             CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHh
Confidence            34599999999999999999872100  00                                 2335789999997643 


Q ss_pred             --cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           63 --DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        63 --~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                        .+....++++.++|+|||.+++.+...
T Consensus       123 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          123 FWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             GCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             hccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence              355788999999999999999875443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.94  E-value=2.7e-09  Score=77.73  Aligned_cols=77  Identities=19%  Similarity=0.216  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhcCCCEEEEEecc-ccHHHHHHHhhCCCC--Cc--------------------------------cCCCCc
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVF-TGYSLLLTALTIPED--GQ--------------------------------SENEGS   52 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g-~G~~t~~la~~~~~~--~~--------------------------------~~~~~~   52 (143)
                      .+++.......+..+|||+||| +|..++.+++.....  +.                                ....++
T Consensus        44 ~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~  123 (230)
T 3evz_A           44 SRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGT  123 (230)
T ss_dssp             HHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSC
T ss_pred             hhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCc
Confidence            3444333334567899999999 999999999874210  00                                112478


Q ss_pred             eeEEEEcCCc----------------------cchHHHHHHHHhcccCCeEEEE
Q 032292           53 FDYAFVDADK----------------------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        53 fD~v~~d~~~----------------------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ||+|+++..-                      ..+...++.+.++|+|||++++
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~  177 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL  177 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence            9999987321                      1246788999999999999987

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.94  E-value=2.1e-09  Score=78.31  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=52.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------c-----CCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------S-----ENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~-----~~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..+..+++.+++.++                                .     ...++||+|+++.
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~  151 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV  151 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence            45679999999999999999987543222                                1     1235799999987


Q ss_pred             CccchHHH-HHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNY-HERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~-~~~~~~~L~~gG~li~d   85 (143)
                      ...+.... ++.+.++|+|||++++.
T Consensus       152 ~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          152 AQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            65444444 89999999999999875

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.94  E-value=1.4e-08  Score=71.33  Aligned_cols=80  Identities=10%  Similarity=0.038  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC------------------------C--c---------cCCCC
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED------------------------G--Q---------SENEG   51 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~------------------------~--~---------~~~~~   51 (143)
                      ..+.+...+...+..+|||+|||+|..+..+++. ...                        .  .         ....+
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  118 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence            3344444445557789999999999999999876 210                        0  0         11245


Q ss_pred             ceeEEEEcCCc----cchHHHHHHHHhcccCCeEEEEecc
Q 032292           52 SFDYAFVDADK----DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        52 ~fD~v~~d~~~----~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +||+|+++...    ......++.+.++|+|||++++...
T Consensus       119 ~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            89999998642    2345788899999999999988543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.94  E-value=1.4e-09  Score=81.25  Aligned_cols=64  Identities=25%  Similarity=0.404  Sum_probs=52.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c---CCCCceeEEEEc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S---ENEGSFDYAFVD   59 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~---~~~~~fD~v~~d   59 (143)
                      ++.+|||||||+|+.++.+|...+. ++                                    .   ...++||+|++.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            4689999999999999999988764 22                                    1   123789999998


Q ss_pred             CCccchHHHHHHHHhcccCCeEEEE
Q 032292           60 ADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        60 ~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      +. .++...++.+.++|+|||++++
T Consensus       159 a~-~~~~~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          159 AV-APLCVLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             SS-CCHHHHHHHHGGGEEEEEEEEE
T ss_pred             Cc-CCHHHHHHHHHHHcCCCeEEEE
Confidence            74 4677889999999999999876

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.94  E-value=2.7e-09  Score=80.43  Aligned_cols=80  Identities=14%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------------c--
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------------S--   47 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------------~--   47 (143)
                      ..+++..++...++.+|||||||+|..+..+++.... .+.                                    +  
T Consensus        45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            3456666666667899999999999999999887321 000                                    1  


Q ss_pred             -CCCCceeEEEEcC-C---ccc-------hHHHHHHHHhcccCCeEEEEec
Q 032292           48 -ENEGSFDYAFVDA-D---KDN-------YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        48 -~~~~~fD~v~~d~-~---~~~-------~~~~~~~~~~~L~~gG~li~d~   86 (143)
                       ...++||+|++.+ .   ..+       ....++.+.++|+|||++++..
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence             3457899999863 1   123       6778999999999999999763

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.94  E-value=1.8e-09  Score=74.54  Aligned_cols=70  Identities=14%  Similarity=0.095  Sum_probs=51.8

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------c--------CCCCceeEEEEcCCc-
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------S--------ENEGSFDYAFVDADK-   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------~--------~~~~~fD~v~~d~~~-   62 (143)
                      ..+..+|||+|||+|..+..+++.+++..+                         +        ...++||+|+++... 
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~   99 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPN   99 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCcc
Confidence            346789999999999999999988532111                         1        234689999997532 


Q ss_pred             --cch-----------HHHHHHHHhcccCCeEEEEec
Q 032292           63 --DNY-----------CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        63 --~~~-----------~~~~~~~~~~L~~gG~li~d~   86 (143)
                        ...           ...++.+.++|+|||.+++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (180)
T 1ej0_A          100 MSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence              122           567888999999999998743

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.93  E-value=1.9e-09  Score=75.54  Aligned_cols=68  Identities=18%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~   58 (143)
                      ..++.+|||+|||+|..++.+++. +. .+                                      +...++||+|++
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~  106 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL  106 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEE
Confidence            456789999999999999999876 31 11                                      112367999999


Q ss_pred             cCCc--cchHHHHHHHH--hcccCCeEEEEec
Q 032292           59 DADK--DNYCNYHERLM--KLLKVGGIAVYDN   86 (143)
Q Consensus        59 d~~~--~~~~~~~~~~~--~~L~~gG~li~d~   86 (143)
                      +...  ..+...++.+.  ++|+|||++++..
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~  138 (177)
T 2esr_A          107 DPPYAKETIVATIEALAAKNLLSEQVMVVCET  138 (177)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCCCCcchHHHHHHHHHhCCCcCCCcEEEEEE
Confidence            8652  34456677776  9999999999864

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.93  E-value=2.1e-09  Score=78.98  Aligned_cols=71  Identities=15%  Similarity=0.086  Sum_probs=53.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------cCCCCceeEEEEcCCc-----cch
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------SENEGSFDYAFVDADK-----DNY   65 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------~~~~~~fD~v~~d~~~-----~~~   65 (143)
                      .++.+|||||||+|..+..+++.... .+.                          +..+++||+|++....     .++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~  119 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERL  119 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGH
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHH
Confidence            45689999999999999999886321 000                          2346889999987532     245


Q ss_pred             HHHHHHHHhcccCCeEEEEeccC
Q 032292           66 CNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ..+++++.++|+|||++++....
T Consensus       120 ~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          120 FELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             HHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEEEEeCC
Confidence            78899999999999999986543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.93  E-value=4.6e-09  Score=78.29  Aligned_cols=81  Identities=16%  Similarity=0.063  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC----C--------C----c-----------cCCCCceeEEE
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE----D--------G----Q-----------SENEGSFDYAF   57 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~----~--------~----~-----------~~~~~~fD~v~   57 (143)
                      +...+.+...+...++.+|||||||+|..+..+++....    +        +    .           +..+++||+|+
T Consensus        20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~   99 (261)
T 3ege_A           20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI   99 (261)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence            344455555555567899999999999999999873210    0        0    0           23357899999


Q ss_pred             EcCCc---cchHHHHHHHHhcccCCeEEEEec
Q 032292           58 VDADK---DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        58 ~d~~~---~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +....   .+....++++.++|+ ||.+++.+
T Consensus       100 ~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A          100 SILAIHHFSHLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             EESCGGGCSSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             EcchHhhccCHHHHHHHHHHHhC-CcEEEEEE
Confidence            87632   467789999999999 99666543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.93  E-value=3.6e-09  Score=75.55  Aligned_cols=80  Identities=14%  Similarity=-0.019  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------cCCCCceeEEEE
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------SENEGSFDYAFV   58 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------~~~~~~fD~v~~   58 (143)
                      ...++..+.... +.+|||+|||+|..+..+++.... .+.                           +...++||+|++
T Consensus        30 ~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  108 (203)
T 3h2b_A           30 DRVLIEPWATGV-DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLA  108 (203)
T ss_dssp             THHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEE
T ss_pred             HHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEe
Confidence            345566665543 789999999999999999887221 000                           234588999998


Q ss_pred             cCCc-----cchHHHHHHHHhcccCCeEEEEecc
Q 032292           59 DADK-----DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        59 d~~~-----~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ....     .+....++.+.++|+|||++++...
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          109 WYSLIHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             ESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            6532     2567889999999999999998653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.92  E-value=1.5e-09  Score=80.14  Aligned_cols=67  Identities=12%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeEEEEcCCc---cc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDYAFVDADK---DN   64 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~v~~d~~~---~~   64 (143)
                      ++.+|||+|||+|..+..+++.......                               +...++||+|++....   .+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  123 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS  123 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh
Confidence            6789999999999999999987542100                               2335789999987632   45


Q ss_pred             hHHHHHHHHhcccCCeEEEEe
Q 032292           65 YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....++.+.++|+|||++++.
T Consensus       124 ~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          124 FDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEE
Confidence            678899999999999999985

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.92  E-value=1.4e-08  Score=87.12  Aligned_cols=122  Identities=10%  Similarity=0.106  Sum_probs=79.4

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------------
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------------   46 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------------   46 (143)
                      +++..++...++.+|||||||+|..+..+++..++...                                          
T Consensus       711 e~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dL  790 (950)
T 3htx_A          711 EYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEF  790 (950)
T ss_dssp             HHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSC
T ss_pred             HHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhC
Confidence            33444445557899999999999999999988742211                                          


Q ss_pred             cCCCCceeEEEEcCCccc-----hHHHHHHHHhcccCCeEEEEeccCC------Ccc---------------ccCCCCCC
Q 032292           47 SENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW------GGT---------------VAVPEEQV  100 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~~~-----~~~~~~~~~~~L~~gG~li~d~~~~------~g~---------------~~~~~~~~  100 (143)
                      +...++||+|++.....+     ...+++.+.++|+|| ++++.....      .+.               ........
T Consensus       791 p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHr  869 (950)
T 3htx_A          791 DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHK  869 (950)
T ss_dssp             CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCS
T ss_pred             CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcc
Confidence            112478999998764332     224788899999999 666653221      110               00000011


Q ss_pred             CCCcccchHHHHHHHHHHhhcCCCeeEEEeecCCe
Q 032292          101 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  135 (143)
Q Consensus       101 ~~~~~~~~~~~~~~f~~~l~~~~~~~~~~lp~~~G  135 (143)
                      -+|    .....+.+.+.+....+|.+.+.++|+|
T Consensus       870 FEW----TReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          870 FEW----TREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             CCB----CHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             eee----cHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence            122    2345777777888888999999999988

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.91  E-value=3.3e-09  Score=75.68  Aligned_cols=68  Identities=13%  Similarity=0.225  Sum_probs=49.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------c------------------------
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------S------------------------   47 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------~------------------------   47 (143)
                      .+..+|||+|||+|..+..+++..++ .++                         .                        
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  100 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKE  100 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHHHh
Confidence            45679999999999999999988752 111                         1                        


Q ss_pred             -CCCCceeEEEEcCCcc-------chH-------HHHHHHHhcccCCeEEEEe
Q 032292           48 -ENEGSFDYAFVDADKD-------NYC-------NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        48 -~~~~~fD~v~~d~~~~-------~~~-------~~~~~~~~~L~~gG~li~d   85 (143)
                       ...++||+|+++....       +..       ..++.+.++|+|||.+++.
T Consensus       101 ~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A          101 ILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence             1235899999986421       111       2577788999999999874

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.91  E-value=4.4e-09  Score=79.15  Aligned_cols=81  Identities=23%  Similarity=0.320  Sum_probs=60.4

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S   47 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~   47 (143)
                      .+.....+...+...+..+|||+|||+|..++.+++.+.+.++                                    .
T Consensus        97 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  176 (277)
T 1o54_A           97 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG  176 (277)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence            3445555556666677889999999999999999998543222                                    1


Q ss_pred             CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...++||+|+++.  .+....++.+.+.|+|||++++..
T Consensus       177 ~~~~~~D~V~~~~--~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          177 FDEKDVDALFLDV--PDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             CSCCSEEEEEECC--SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCccCEEEECC--cCHHHHHHHHHHHcCCCCEEEEEe
Confidence            1246799999975  344577889999999999998753

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.91  E-value=4.9e-09  Score=75.27  Aligned_cols=79  Identities=15%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC----C------------C-c-----------cCCCCceeEEEEcC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE----D------------G-Q-----------SENEGSFDYAFVDA   60 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~----~------------~-~-----------~~~~~~fD~v~~d~   60 (143)
                      .++..+....+..+|||||||+|..+..+++....    +            + .           ....++||+|++..
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  115 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAH  115 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEES
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEec
Confidence            45555555666789999999999999999887211    0            0 0           12457899999876


Q ss_pred             Ccc---c--hHHHHHHHHhcccCCeEEEEecc
Q 032292           61 DKD---N--YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        61 ~~~---~--~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ...   +  ....++.+.++|+|||.+++.+.
T Consensus       116 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          116 WLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            432   1  36678999999999999988654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.90  E-value=4.7e-09  Score=81.35  Aligned_cols=68  Identities=19%  Similarity=0.124  Sum_probs=52.4

Q ss_pred             cCCC--EEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEE
Q 032292           18 VNAK--KTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        18 ~~~~--~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~   57 (143)
                      .+++  +|||||||+|..+.++++..+. .+                                      ....++||+|+
T Consensus        86 p~p~~~rVLdIG~G~G~la~~la~~~p~-~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi  164 (317)
T 3gjy_A           86 QDASKLRITHLGGGACTMARYFADVYPQ-SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVII  164 (317)
T ss_dssp             SCGGGCEEEEESCGGGHHHHHHHHHSTT-CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEE
T ss_pred             CCCCCCEEEEEECCcCHHHHHHHHHCCC-cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEE
Confidence            3455  9999999999999999987653 12                                      11257899999


Q ss_pred             EcCCccc-------hHHHHHHHHhcccCCeEEEEec
Q 032292           58 VDADKDN-------YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        58 ~d~~~~~-------~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +|.....       ..++++.+.++|+|||++++..
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            9864321       1578999999999999998864

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.90  E-value=6.8e-09  Score=74.74  Aligned_cols=71  Identities=17%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCC-CCc-----------------------------c-CCCCceeEEEEcCC--cc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------------------------S-ENEGSFDYAFVDAD--KD   63 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------------------------~-~~~~~fD~v~~d~~--~~   63 (143)
                      ..++.+|||||||+|..+..+++.... .+.                             + ....+||+|++...  ..
T Consensus        50 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~~  129 (227)
T 3e8s_A           50 GRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLHQ  129 (227)
T ss_dssp             HTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCCSS
T ss_pred             cCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhhhh
Confidence            446799999999999999999876211 000                             1 22445999998753  34


Q ss_pred             chHHHHHHHHhcccCCeEEEEecc
Q 032292           64 NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +....++.+.++|+|||++++...
T Consensus       130 ~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          130 DIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             CCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hHHHHHHHHHHHhCCCeEEEEEec
Confidence            667899999999999999998754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.90  E-value=1.8e-09  Score=79.88  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEEEEcCCc---
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYAFVDADK---   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v~~d~~~---   62 (143)
                      .++.+|||||||+|..+..+++.......                                +...++||+|++....   
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhc
Confidence            45679999999999999999987421000                                2236789999987532   


Q ss_pred             --cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           63 --DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        63 --~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                        .+....++++.++|+|||.+++.+..
T Consensus       134 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          134 SLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence              34567889999999999999987653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.90  E-value=2.3e-09  Score=82.43  Aligned_cols=78  Identities=24%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c--C
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S--E   48 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~--~   48 (143)
                      +.....+...+...++.+|||||||+|..+..+++..+..++                                  .  .
T Consensus        61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~  140 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP  140 (317)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc
Confidence            445555555666677899999999999999999987653222                                  1  1


Q ss_pred             CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        49 ~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..++||+|+++.......   +.+.+.|+|||++++.
T Consensus       141 ~~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~  174 (317)
T 1dl5_A          141 EFSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (317)
T ss_dssp             GGCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             cCCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEE
Confidence            246899999987544433   5678899999999986

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.89  E-value=1.9e-09  Score=78.69  Aligned_cols=70  Identities=17%  Similarity=0.230  Sum_probs=53.1

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCccc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKDN   64 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~~   64 (143)
                      .++.+|||||||+|..+..+++..+. .+                                 ....++||+|++......
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  121 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH  121 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence            45789999999999999999998753 11                                 112378999999764321


Q ss_pred             -----hHHHHHHHHhcccCCeEEEEeccC
Q 032292           65 -----YCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        65 -----~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                           ....++++.++|+|||++++.+..
T Consensus       122 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          122 LEDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                 224789999999999999986644

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.89  E-value=4.4e-09  Score=75.67  Aligned_cols=71  Identities=18%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------cCCCCceeEEEEcCCcc-----c
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------SENEGSFDYAFVDADKD-----N   64 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------~~~~~~fD~v~~d~~~~-----~   64 (143)
                      ...++.+|||||||+|..+..+++.... .+.                         ....++||+|++.....     +
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDE  119 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHH
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHHH
Confidence            3445789999999999999999886211 000                         12467899999876332     4


Q ss_pred             hHHHHHHHHhcccCCeEEEEec
Q 032292           65 YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ....++.+.++|+|||++++..
T Consensus       120 ~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          120 LADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEE
Confidence            5578899999999999999863

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.89  E-value=2e-08  Score=80.35  Aligned_cols=84  Identities=21%  Similarity=0.216  Sum_probs=61.7

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------c------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------S------   47 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------~------   47 (143)
                      ......++..++...+..+|||+|||+|..|..+++..+. +.                              .      
T Consensus       231 qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~  309 (429)
T 1sqg_A          231 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ  309 (429)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH
T ss_pred             eCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchh
Confidence            3455666777777777889999999999999999998763 22                              0      


Q ss_pred             -CCCCceeEEEEcCCc---------cc----------------hHHHHHHHHhcccCCeEEEEeccC
Q 032292           48 -ENEGSFDYAFVDADK---------DN----------------YCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        48 -~~~~~fD~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                       ...++||+|++|..-         .+                +...++.+.++|+|||++++....
T Consensus       310 ~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs  376 (429)
T 1sqg_A          310 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  376 (429)
T ss_dssp             HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence             113679999998521         00                135688888999999999986543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.89  E-value=1.6e-09  Score=82.64  Aligned_cols=73  Identities=15%  Similarity=0.010  Sum_probs=52.4

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEEcC
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~d~   60 (143)
                      ..++.+|||||||+|..+..+|....+...                                    ....++||+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            456789999999999999998633222221                                    11237899999865


Q ss_pred             Ccc---c---hHHHHHHHHhcccCCeEEEEeccCC
Q 032292           61 DKD---N---YCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        61 ~~~---~---~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ...   +   ....++++.++|+|||++++.+...
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            321   2   2346899999999999999977543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.89  E-value=4.4e-09  Score=75.33  Aligned_cols=65  Identities=17%  Similarity=0.122  Sum_probs=52.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCcc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      +..+|||+|||+|..+..+++..+. .+                                   ....++||+|++++. .
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~  142 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C
Confidence            3789999999999999999988653 11                                   112468999998753 5


Q ss_pred             chHHHHHHHHhcccCCeEEEEe
Q 032292           64 NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++...++.+.++|+|||++++.
T Consensus       143 ~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          143 SLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             SHHHHHHHHTTSEEEEEEEEEE
T ss_pred             CHHHHHHHHHHhcCCCcEEEEE
Confidence            6788999999999999999875

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.88  E-value=5.1e-09  Score=80.71  Aligned_cols=83  Identities=23%  Similarity=0.256  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SE   48 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~   48 (143)
                      .....++..++...+..+|||+|||+|..|..+|+.+++.++                                    +.
T Consensus       104 d~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~  183 (315)
T 1ixk_A          104 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE  183 (315)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG
T ss_pred             CHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc
Confidence            344556666666777889999999999999999998754332                                    11


Q ss_pred             CCCceeEEEEcCCc------c-c------------------hHHHHHHHHhcccCCeEEEEecc
Q 032292           49 NEGSFDYAFVDADK------D-N------------------YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        49 ~~~~fD~v~~d~~~------~-~------------------~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ..++||+|++|+.-      . +                  ....++.+.++|+|||++++...
T Consensus       184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            24689999998421      0 0                  13678888999999999998654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.88  E-value=7.6e-09  Score=73.27  Aligned_cols=74  Identities=16%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             HHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------------cCCCCceeEEEEc
Q 032292           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------------~~~~~~fD~v~~d   59 (143)
                      ..++...++.+|||+|||+|..+..+++.... .+.                               ....++||+|++.
T Consensus        25 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~  104 (199)
T 2xvm_A           25 LEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST  104 (199)
T ss_dssp             HHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEE
T ss_pred             HHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEc
Confidence            33444557789999999999999999876210 000                               1116789999987


Q ss_pred             CCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADK-----DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~-----~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...     .+....++.+.++|+|||.+++-
T Consensus       105 ~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~  135 (199)
T 2xvm_A          105 VVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  135 (199)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            532     25667899999999999997653

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.88  E-value=3.2e-09  Score=78.34  Aligned_cols=68  Identities=16%  Similarity=0.104  Sum_probs=53.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------cCCCCceeEEEEcCCc---cc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------SENEGSFDYAFVDADK---DN   64 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------~~~~~~fD~v~~d~~~---~~   64 (143)
                      .++.+|||||||+|..+..+++..+. +.                              ....++||+|++....   .+
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  110 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYANAVFQWVPD  110 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCT-TSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEESCGGGSTT
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEeCchhhCCC
Confidence            46789999999999999999988642 11                              1135689999987643   35


Q ss_pred             hHHHHHHHHhcccCCeEEEEec
Q 032292           65 YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ....++++.++|+|||++++..
T Consensus       111 ~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          111 HLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEEe
Confidence            6778999999999999998864

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.88  E-value=4.7e-09  Score=75.13  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCc
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGS   52 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~   52 (143)
                      ...+++..+....++.+|||+|||+|..+..++........                                 +...++
T Consensus        10 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (209)
T 2p8j_A           10 QLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDES   89 (209)
T ss_dssp             HHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTC
T ss_pred             hHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCc
Confidence            34566766666677899999999999875443333221000                                 223578


Q ss_pred             eeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEecc
Q 032292           53 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        53 fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ||+|++....     .+....++.+.++|+|||++++...
T Consensus        90 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           90 MSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9999986432     3456688899999999999998754

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.88  E-value=2.1e-08  Score=80.80  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c-
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S-   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~-   47 (143)
                      .....++..++...+..+|||+|||+|..|..+++.++..++                                    + 
T Consensus       245 d~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~  324 (450)
T 2yxl_A          245 EEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPE  324 (450)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSS
T ss_pred             CchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcch
Confidence            345566666677777789999999999999999998764232                                    1 


Q ss_pred             -CCCCceeEEEEcCCc--c-------c----------------hHHHHHHHHhcccCCeEEEEeccC
Q 032292           48 -ENEGSFDYAFVDADK--D-------N----------------YCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        48 -~~~~~fD~v~~d~~~--~-------~----------------~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                       ...++||.|++|+.-  .       +                ....++.+.++|+|||.+++....
T Consensus       325 ~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          325 IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence             112679999997421  0       0                045688889999999999976543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.88  E-value=2.4e-09  Score=77.25  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CC-------------------c----------cCCCCceeEEEE
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DG-------------------Q----------SENEGSFDYAFV   58 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~-------------------~----------~~~~~~fD~v~~   58 (143)
                      +++..+....++.+|||+|||+|..+..+++.... .+                   .          ....++||+|++
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  120 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVV  120 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEE
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEE
Confidence            34444444556789999999999999999876321 00                   0          123578999999


Q ss_pred             cCCc---cc---hHHHHHHHHhcccCCeEEEEec
Q 032292           59 DADK---DN---YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        59 d~~~---~~---~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ....   .+   ....++.+.++|+|||++++..
T Consensus       121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            7532   12   2466899999999999999854

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.88  E-value=4.1e-09  Score=77.28  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------c-----CCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------S-----ENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~-----~~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..+..+++..++.++                                .     ...++||+|+++.
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~  155 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV  155 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence            45679999999999999999988632221                                0     1246899999987


Q ss_pred             Cccch-HHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNY-CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~-~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...+. ...+..+.+.|+|||++++.
T Consensus       156 ~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          156 AQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             CCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            53332 34577899999999999984

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.88  E-value=4.6e-09  Score=76.71  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=56.6

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeEEEE
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~v~~   58 (143)
                      .+..++...++.+|||||||+|..+..+++.......                               +...++||+|++
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  113 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYS  113 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEE
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEE
Confidence            3444444457789999999999999999876321100                               223578999998


Q ss_pred             cCCc---cchHHHHHHHHhcccCCeEEEEec
Q 032292           59 DADK---DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        59 d~~~---~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ....   .+....++.+.++|+|||++++..
T Consensus       114 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          114 SLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence            7532   356778999999999999998853

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.87  E-value=3.7e-09  Score=79.50  Aligned_cols=81  Identities=10%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             HHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCce
Q 032292            9 QLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSF   53 (143)
Q Consensus         9 ~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~f   53 (143)
                      +.+..++..   .++.+|||||||+|..+..+++..+....                                ....++|
T Consensus        51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f  130 (287)
T 1kpg_A           51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  130 (287)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence            344444443   45679999999999999999965432100                                1123789


Q ss_pred             eEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           54 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        54 D~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      |+|++....     .++...++++.++|+|||++++.+...
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            999987432     356788999999999999999876553

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.87  E-value=7e-09  Score=78.67  Aligned_cols=67  Identities=13%  Similarity=0.066  Sum_probs=51.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCC------Cce
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENE------GSF   53 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~------~~f   53 (143)
                      .++.+|||||||+|..+..+++.+++..+                                      +...      ++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            36789999999999999999976521111                                      1123      689


Q ss_pred             eEEEEcCCc--cchHHHHHHHHhcccCCeEEEE
Q 032292           54 DYAFVDADK--DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        54 D~v~~d~~~--~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      |+|++....  .+....++++.++|+|||++++
T Consensus       115 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          115 DMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            999987532  2667889999999999999987

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.87  E-value=1.2e-08  Score=78.10  Aligned_cols=67  Identities=19%  Similarity=0.160  Sum_probs=50.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDYA   56 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~v   56 (143)
                      .++++|||||||+|..+..+++..+. .+                                         +...++||+|
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  167 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSV-EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  167 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTC-SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence            46789999999999999999886432 11                                         1124679999


Q ss_pred             EEcCCcc--------chHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADKD--------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~~--------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++|....        .....++.+.++|+|||++++.
T Consensus       168 i~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          168 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            9986432        2257889999999999999986

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.87  E-value=6.4e-09  Score=74.99  Aligned_cols=68  Identities=10%  Similarity=0.033  Sum_probs=49.5

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCC--
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDAD--   61 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~--   61 (143)
                      +..+|||+|||+|..++.+++.......                                   +...++||+|+++..  
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            6789999999999999987665321100                                   223468999999865  


Q ss_pred             ccchHHHHHHHHh--cccCCeEEEEec
Q 032292           62 KDNYCNYHERLMK--LLKVGGIAVYDN   86 (143)
Q Consensus        62 ~~~~~~~~~~~~~--~L~~gG~li~d~   86 (143)
                      ...+...++.+.+  +|+|||++++..
T Consensus       134 ~~~~~~~l~~l~~~~~L~pgG~l~i~~  160 (202)
T 2fpo_A          134 RGLLEETINLLEDNGWLADEALIYVES  160 (202)
T ss_dssp             TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             CCcHHHHHHHHHhcCccCCCcEEEEEE
Confidence            3355667777765  599999998763

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.87  E-value=6.7e-09  Score=75.17  Aligned_cols=66  Identities=15%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c--CCCCceeEEEEcC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S--ENEGSFDYAFVDA   60 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~--~~~~~fD~v~~d~   60 (143)
                      +..+|||||||+|..++.+|+..+. ..                                    +  ...++||+|+++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            4689999999999999999998763 21                                    1  2356899999875


Q ss_pred             Ccc-----------chHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKD-----------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~-----------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...           .+...++.+.++|+|||++++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            321           2357899999999999999874

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.86  E-value=3.2e-09  Score=81.39  Aligned_cols=66  Identities=26%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC--------Cc----------------------c---CCCCceeEEEEcCCccch
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED--------GQ----------------------S---ENEGSFDYAFVDADKDNY   65 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~--------~~----------------------~---~~~~~fD~v~~d~~~~~~   65 (143)
                      +.++|||||||||..|.++++.-...        +.                      .   ....+||+|++|....+.
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl  164 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISL  164 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSCG
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhhH
Confidence            45799999999999999988762110        00                      0   112349999999877777


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 032292           66 CNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~   84 (143)
                      ...++++.++|+|||.+++
T Consensus       165 ~~vL~e~~rvLkpGG~lv~  183 (291)
T 3hp7_A          165 NLILPALAKILVDGGQVVA  183 (291)
T ss_dssp             GGTHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHcCcCCEEEE
Confidence            8889999999999999987

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.86  E-value=8.9e-09  Score=73.47  Aligned_cols=79  Identities=11%  Similarity=0.043  Sum_probs=54.4

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC----CC-----------------c-----------cCCCCceeEEE
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE----DG-----------------Q-----------SENEGSFDYAF   57 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~----~~-----------------~-----------~~~~~~fD~v~   57 (143)
                      ++..++...++.+|||||||+|..+..+++....    +.                 .           +...++||+|+
T Consensus        20 ~l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~   99 (202)
T 2kw5_A           20 FLVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIV   99 (202)
T ss_dssp             SHHHHHHHSCSSEEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEE
T ss_pred             HHHHHHHhCCCCCEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEE
Confidence            3444444334449999999999999999875211    00                 0           22357899999


Q ss_pred             EcCCc---cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           58 VDADK---DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        58 ~d~~~---~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +...+   .+....++.+.++|+|||++++....
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          100 SIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             EEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            86433   23456888999999999999987543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.86  E-value=1e-08  Score=73.92  Aligned_cols=80  Identities=20%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC----CC--------------c---------c-CCCCceeEEEEcC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE----DG--------------Q---------S-ENEGSFDYAFVDA   60 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~----~~--------------~---------~-~~~~~fD~v~~d~   60 (143)
                      .++..+. ..++.+|||+|||+|..+..+++....    +-              .         . ...++||+|++..
T Consensus        36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  114 (220)
T 3hnr_A           36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTY  114 (220)
T ss_dssp             HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEES
T ss_pred             HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECc
Confidence            4444443 347789999999999999999876211    00              0         0 1127899999986


Q ss_pred             Ccc---chH--HHHHHHHhcccCCeEEEEeccCC
Q 032292           61 DKD---NYC--NYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        61 ~~~---~~~--~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ...   +..  ..++++.+.|+|||.+++.+..+
T Consensus       115 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          115 AFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             chhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            432   222  37899999999999999875443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.86  E-value=4.3e-09  Score=78.53  Aligned_cols=77  Identities=19%  Similarity=0.107  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhc-CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c--CC
Q 032292            8 GQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S--EN   49 (143)
Q Consensus         8 ~~~l~~l~~~~-~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~--~~   49 (143)
                      +.+|..++... ++.+|||+|||+|..++.+++..+....                                   .  ..
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~  116 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP  116 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc
Confidence            56777777776 7899999999999999999987552100                                   1  22


Q ss_pred             CCceeEEEEcCCc-----------------------cchHHHHHHHHhcccCCeEEEE
Q 032292           50 EGSFDYAFVDADK-----------------------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        50 ~~~fD~v~~d~~~-----------------------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .++||+|+++..-                       ..+...++.+.++|+|||++++
T Consensus       117 ~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          117 KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            5789999996321                       1234578888999999999987

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=8.7e-09  Score=77.35  Aligned_cols=73  Identities=22%  Similarity=0.135  Sum_probs=53.6

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------cCCCCceeEEEEcCCc---c
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------SENEGSFDYAFVDADK---D   63 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------~~~~~~fD~v~~d~~~---~   63 (143)
                      .+...++.+|||||||+|..+..+++.... .+.                          ....++||+|++....   .
T Consensus        52 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~  131 (279)
T 3ccf_A           52 LLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAMLHWVK  131 (279)
T ss_dssp             HHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEESCGGGCS
T ss_pred             HhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEcchhhhCc
Confidence            334456789999999999999999872110 000                          1124689999987643   4


Q ss_pred             chHHHHHHHHhcccCCeEEEEec
Q 032292           64 NYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +....++++.++|+|||++++..
T Consensus       132 d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          132 EPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHhcCCCcEEEEEe
Confidence            56788999999999999998854

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.86  E-value=3.3e-08  Score=73.81  Aligned_cols=79  Identities=18%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             HHHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeE
Q 032292            9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDY   55 (143)
Q Consensus         9 ~~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~   55 (143)
                      ..+..+... .++.+|||+|||+|..++.+++... ...                                ....++||+
T Consensus       109 ~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~  187 (254)
T 2nxc_A          109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDL  187 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEE
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCE
Confidence            344444433 4678999999999999999887533 100                                122568999


Q ss_pred             EEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           56 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        56 v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      |+++.........++.+.++|+|||++++..+.
T Consensus       188 Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          188 LVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            999875555667889999999999999986544

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.85  E-value=5.1e-09  Score=76.75  Aligned_cols=67  Identities=16%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------c----C-CCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------S----E-NEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~----~-~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..+..+++..+. ++                                .    . ..++||+|+.+.
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~  151 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEECC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCC-cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEec
Confidence            35689999999999999999998752 22                                0    1 125799999764


Q ss_pred             Cc-cchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DK-DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~-~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .. .....+++.+.+.|+|||++++.
T Consensus       152 ~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          152 AQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            32 23366799999999999999884

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.85  E-value=4.8e-09  Score=72.92  Aligned_cols=74  Identities=11%  Similarity=0.021  Sum_probs=56.1

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------cCCCCceeEEEEcCCc---cchHH
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------SENEGSFDYAFVDADK---DNYCN   67 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------~~~~~~fD~v~~d~~~---~~~~~   67 (143)
                      ...+..+|||+|||+|..+..+++.... .+.                        +...++||+|++....   .+...
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~   93 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQH   93 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSGGGSCTTCEEEEEEESCSTTCSCHHH
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCCCCCCCCceEEEEEccchhcccCHHH
Confidence            4556789999999999999999887521 000                        2345789999987533   35678


Q ss_pred             HHHHHHhcccCCeEEEEeccCC
Q 032292           68 YHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        68 ~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .++++.+.|+|||++++.+...
T Consensus        94 ~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           94 VISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECS
T ss_pred             HHHHHHHhcCCCCEEEEEEcCc
Confidence            8999999999999999875543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.85  E-value=2.6e-08  Score=77.12  Aligned_cols=69  Identities=17%  Similarity=0.196  Sum_probs=52.2

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDY   55 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~   55 (143)
                      ..++++|||||||+|..+..+++..+. .+                                         +...++||+
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDv  192 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSV-ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV  192 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceE
Confidence            346899999999999999999876432 11                                         012467999


Q ss_pred             EEEcCCcc------ch-HHHHHHHHhcccCCeEEEEec
Q 032292           56 AFVDADKD------NY-CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        56 v~~d~~~~------~~-~~~~~~~~~~L~~gG~li~d~   86 (143)
                      |++|....      .+ ...++.+.++|+|||++++..
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            99987321      12 678999999999999999863

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.85  E-value=5.3e-09  Score=79.93  Aligned_cols=82  Identities=11%  Similarity=0.102  Sum_probs=58.7

Q ss_pred             HHHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCc
Q 032292            8 GQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGS   52 (143)
Q Consensus         8 ~~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~   52 (143)
                      .+.+..++..   .+..+|||||||+|..+..+++..+....                                ...+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  155 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP  155 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCC
Confidence            3444455443   45679999999999999999987431100                                112378


Q ss_pred             eeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           53 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        53 fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ||+|++....     .++...++++.++|+|||++++.+...
T Consensus       156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            9999987432     456788999999999999999876554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.84  E-value=1.2e-08  Score=74.88  Aligned_cols=79  Identities=27%  Similarity=0.316  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cC-
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SE-   48 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~-   48 (143)
                      .+.....+...+...+..+|||+|||+|..+..+++. .....                                  .. 
T Consensus        76 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  154 (248)
T 2yvl_A           76 YPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV  154 (248)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC
T ss_pred             cchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc
Confidence            3555666666666667889999999999999999987 21000                                  11 


Q ss_pred             CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        49 ~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..++||+|+++..  +....++.+.++|+|||.+++.
T Consensus       155 ~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~  189 (248)
T 2yvl_A          155 PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFL  189 (248)
T ss_dssp             CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEE
T ss_pred             CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEE
Confidence            3457999999653  4456788999999999999874

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.84  E-value=2.9e-09  Score=76.09  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHhh----cCCCEEEEEeccccHHHHHHHhhCC
Q 032292            5 TIHGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         5 ~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +++..++..+...    .++.+|||+|||+|..+..+++..+
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~   53 (215)
T 4dzr_A           12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP   53 (215)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT
T ss_pred             ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC
Confidence            4444555555543    5678999999999999999999865

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.84  E-value=5.2e-09  Score=79.54  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             CCceeEEEEcCCc---c------chHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           50 EGSFDYAFVDADK---D------NYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        50 ~~~fD~v~~d~~~---~------~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      .++||+|++....   .      .....++++.++|+|||++++..-.|.
T Consensus       175 ~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          175 TPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             CCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHH
T ss_pred             CCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCch
Confidence            4689999987642   1      345678999999999999999765554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.83  E-value=3.9e-09  Score=80.67  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCC
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ..+..+|||||||+|..+..+++.......                                   +...++||+|++...
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  194 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES  194 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence            445789999999999999999987421100                                   223578999998643


Q ss_pred             --ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           62 --KDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 --~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                        +.+....++.+.++|+|||++++.+..
T Consensus       195 l~~~~~~~~l~~~~~~LkpgG~l~~~~~~  223 (312)
T 3vc1_A          195 TMYVDLHDLFSEHSRFLKVGGRYVTITGC  223 (312)
T ss_dssp             GGGSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhhCCHHHHHHHHHHHcCCCcEEEEEEcc
Confidence              224678899999999999999876543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.83  E-value=1.3e-08  Score=74.33  Aligned_cols=76  Identities=13%  Similarity=0.167  Sum_probs=55.5

Q ss_pred             HHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCC-CCc-----------------------------cCCCCceeEEEEc
Q 032292           11 MAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        11 l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------------------------~~~~~~fD~v~~d   59 (143)
                      +..+.. ..++.+|||||||+|..+..+++.... .+.                             +...++||+|++.
T Consensus        44 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  123 (242)
T 3l8d_A           44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAI  123 (242)
T ss_dssp             HHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred             HHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEc
Confidence            333433 235789999999999999999886211 000                             2346789999987


Q ss_pred             CCc---cchHHHHHHHHhcccCCeEEEEec
Q 032292           60 ADK---DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        60 ~~~---~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...   .+....++.+.++|+|||++++..
T Consensus       124 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          124 NSLEWTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             SCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence            532   456678999999999999998865

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.83  E-value=6e-09  Score=76.53  Aligned_cols=79  Identities=20%  Similarity=0.264  Sum_probs=56.1

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCC-
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SEN-   49 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~-   49 (143)
                      .+.....+..++...+..+|||||||+|+.+..+++..+....                                 ... 
T Consensus        76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  155 (235)
T 1jg1_A           76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP  155 (235)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC
Confidence            3455555555666667889999999999999999988641100                                 111 


Q ss_pred             CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..+||+|+++.......   +.+.+.|+|||++++.
T Consensus       156 ~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          156 KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEE
Confidence            23599999987654433   3678999999999875

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.83  E-value=1.3e-08  Score=76.51  Aligned_cols=69  Identities=14%  Similarity=0.056  Sum_probs=52.7

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------c-CCCCceeEEEEcCCc-
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------S-ENEGSFDYAFVDADK-   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~-~~~~~fD~v~~d~~~-   62 (143)
                      ++.+|||||||+|..+..+++.... .+.                                 + ...++||+|++.... 
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~  147 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE  147 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence            3579999999999999999887211 000                                 1 346789999987643 


Q ss_pred             --cchHHHHHHHHhcccCCeEEEEecc
Q 032292           63 --DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        63 --~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                        .+....++.+.++|+|||++++...
T Consensus       148 ~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          148 WVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             GCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence              3567889999999999999988653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.83  E-value=2.3e-08  Score=70.25  Aligned_cols=76  Identities=17%  Similarity=0.123  Sum_probs=53.9

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------cCCCCceeEEEEcC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------~~~~~~fD~v~~d~   60 (143)
                      +++..+  ..++.+|||+|||+|..+..+++.... .+.                           +...++||+|++..
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  115 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAG  115 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECC
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECC
Confidence            455544  346789999999999999999876211 000                           12346899999974


Q ss_pred             Cc------cchHHHHHHHHhcccCCeEEEEec
Q 032292           61 DK------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        61 ~~------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ..      .+....++.+.++|+|||++++..
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          116 NVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            32      223567889999999999998853

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.82  E-value=2.3e-08  Score=73.58  Aligned_cols=79  Identities=16%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             HHHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCce
Q 032292            8 GQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSF   53 (143)
Q Consensus         8 ~~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~f   53 (143)
                      ..++..+...   .++.+|||+|||+|..+..+++.... .+.                              ....++|
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  106 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCc
Confidence            4555555543   34689999999999999999876211 000                              1124689


Q ss_pred             eEEEEcCCc------cchHHHHHHHHhcccCCeEEEEec
Q 032292           54 DYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        54 D~v~~d~~~------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      |+|++....      .+....++.+.++|+|||+++++-
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            999975321      234567889999999999999863

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.82  E-value=1.1e-08  Score=73.70  Aligned_cols=70  Identities=13%  Similarity=0.078  Sum_probs=49.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC---------------------C----c------------cC-CCCc-eeEEEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED---------------------G----Q------------SE-NEGS-FDYAFV   58 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~---------------------~----~------------~~-~~~~-fD~v~~   58 (143)
                      .+..+|||+|||+|..++.++......                     +    .            +. ..++ ||+|++
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            367899999999999999866553210                     0    0            11 1457 999999


Q ss_pred             cCC--ccchHHHHHHH--HhcccCCeEEEEecc
Q 032292           59 DAD--KDNYCNYHERL--MKLLKVGGIAVYDNT   87 (143)
Q Consensus        59 d~~--~~~~~~~~~~~--~~~L~~gG~li~d~~   87 (143)
                      +..  ...+...++.+  .++|+|||++++...
T Consensus       132 ~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~  164 (201)
T 2ift_A          132 DPPFHFNLAEQAISLLCENNWLKPNALIYVETE  164 (201)
T ss_dssp             CCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCCCCCccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            865  23456677777  568999999988643

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.82  E-value=2e-09  Score=78.68  Aligned_cols=63  Identities=11%  Similarity=0.030  Sum_probs=48.2

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc----------------------------cCC-CCceeEEEEcCCccchHH
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ----------------------------SEN-EGSFDYAFVDADKDNYCN   67 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~----------------------------~~~-~~~fD~v~~d~~~~~~~~   67 (143)
                      .++.+|||||||+|..+..+++.... .+.                            +.. +++||+|++..   +...
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---~~~~  123 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---GPTS  123 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES---CCSG
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC---CHHH
Confidence            46789999999999999999987211 000                            222 57899999973   3455


Q ss_pred             HHHHHHhcccCCeEEE
Q 032292           68 YHERLMKLLKVGGIAV   83 (143)
Q Consensus        68 ~~~~~~~~L~~gG~li   83 (143)
                      .++.+.++|+|||+++
T Consensus       124 ~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          124 VILRLPELAAPDAHFL  139 (226)
T ss_dssp             GGGGHHHHEEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEE
Confidence            6778899999999998

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.82  E-value=5e-09  Score=73.62  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------c------CCCCceeEEE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------S------ENEGSFDYAF   57 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~------~~~~~fD~v~   57 (143)
                      ..++.+|||+|||+|..++.+++.......                                 .      ...++||+|+
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            346789999999999999988874211000                                 0      1157899999


Q ss_pred             EcCC--ccchHHHHHHH--HhcccCCeEEEEec
Q 032292           58 VDAD--KDNYCNYHERL--MKLLKVGGIAVYDN   86 (143)
Q Consensus        58 ~d~~--~~~~~~~~~~~--~~~L~~gG~li~d~   86 (143)
                      ++..  .......++.+  .++|+|||++++..
T Consensus       122 ~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~  154 (187)
T 2fhp_A          122 LDPPYAKQEIVSQLEKMLERQLLTNEAVIVCET  154 (187)
T ss_dssp             ECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ECCCCCchhHHHHHHHHHHhcccCCCCEEEEEe
Confidence            9865  23455667776  78999999998853

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=98.82  E-value=3.2e-08  Score=74.58  Aligned_cols=74  Identities=18%  Similarity=0.150  Sum_probs=53.2

Q ss_pred             CCceeEEEEcCCc-cchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 032292           50 EGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS  128 (143)
Q Consensus        50 ~~~fD~v~~d~~~-~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~  128 (143)
                      .++||+||+|+++ ..+..+++.+.++|+|||+|++||+.+.+        +|    . ..+|+++|    ....+....
T Consensus       180 ~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~--------w~----G-~~~A~~ef----~~~~~~~i~  242 (257)
T 3tos_A          180 QTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK--------WP----G-ENIAMRKV----LGLDHAPLR  242 (257)
T ss_dssp             TCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT--------CT----H-HHHHHHHH----TCTTSSCCE
T ss_pred             CCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC--------Ch----H-HHHHHHHH----HhhCCCeEE
Confidence            4579999999987 45667899999999999999999974321        11    1 34455555    455667777


Q ss_pred             EeecCCeeEEEE
Q 032292          129 HVALGDGITICR  140 (143)
Q Consensus       129 ~lp~~~Gl~~~~  140 (143)
                      .+|+..+....+
T Consensus       243 ~~p~~~~~~y~~  254 (257)
T 3tos_A          243 LLPGRPAPAYLR  254 (257)
T ss_dssp             ECTTCSCCEEEE
T ss_pred             EccCCCCCEEEE
Confidence            888888776554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.82  E-value=9.1e-09  Score=75.97  Aligned_cols=80  Identities=23%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~   47 (143)
                      +.....+...+...+..+|||+|||+|..+..+++.+.+.++                                     +
T Consensus        82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~  161 (258)
T 2pwy_A           82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE  161 (258)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred             chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence            444445555556667889999999999999999988432111                                     1


Q ss_pred             CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           48 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...++||+|+++..  +....++.+.++|+|||.+++..
T Consensus       162 ~~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          162 LEEAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             CCTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            23467999999753  44577889999999999998743

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.82  E-value=1e-08  Score=76.77  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=59.3

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------   46 (143)
                      .+.....+...+...+..+|||+|||+|..+..+++.+.+.++                                     
T Consensus        84 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~  163 (280)
T 1i9g_A           84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA  163 (280)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence            4445555555566667889999999999999999986422111                                     


Q ss_pred             --cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           47 --SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        47 --~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                        +...++||+|+++..  +....++.+.++|+|||++++..
T Consensus       164 ~~~~~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          164 DSELPDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             GCCCCTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hcCCCCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence              112467999999754  44578889999999999998743

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.82  E-value=1.3e-08  Score=75.18  Aligned_cols=69  Identities=19%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCC------C---------------Cc-----------cCCCCceeEEEEcCCc--
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPE------D---------------GQ-----------SENEGSFDYAFVDADK--   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~------~---------------~~-----------~~~~~~fD~v~~d~~~--   62 (143)
                      ..++.+|||||||+|..+..+++....      +               ..           +..+++||+|++....  
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  116 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL  116 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence            346789999999999999999875210      0               00           2235789999987542  


Q ss_pred             -cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 -DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 -~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                       .+....++++.++|+|||++++.
T Consensus       117 ~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          117 VPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             CTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHCCCCcEEEEE
Confidence             35577899999999999999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.82  E-value=1.9e-08  Score=75.63  Aligned_cols=76  Identities=12%  Similarity=0.180  Sum_probs=54.0

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEE
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAF   57 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~   57 (143)
                      .++..+. ..++.+|||+|||+|..+..+++.... .+.                              ....++||+|+
T Consensus       111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~  189 (286)
T 3m70_A          111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIV  189 (286)
T ss_dssp             HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEE
T ss_pred             HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEE
Confidence            3444433 347899999999999999999987221 000                              11267899999


Q ss_pred             EcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292           58 VDADK-----DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~-----~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +....     ......++.+.++|+|||++++-
T Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          190 STVVFMFLNRERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             ECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EccchhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            87632     34557899999999999997653

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.81  E-value=6.6e-09  Score=76.12  Aligned_cols=67  Identities=24%  Similarity=0.226  Sum_probs=50.8

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c--CCCCceeEEEEcC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S--ENEGSFDYAFVDA   60 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~--~~~~~fD~v~~d~   60 (143)
                      +..+|||||||+|..++.+|+..+....                                    +  ...++||.|++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            5679999999999999999998764111                                    1  3568999999862


Q ss_pred             ---Cc--cc------hHHHHHHHHhcccCCeEEEEe
Q 032292           61 ---DK--DN------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ---~~--~~------~~~~~~~~~~~L~~gG~li~d   85 (143)
                         +.  ..      ....++.+.++|+|||++++.
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence               11  11      135899999999999999774

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.81  E-value=1.3e-08  Score=73.05  Aligned_cols=68  Identities=19%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC--------C----Cc-----c--CC----------C----CceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE--------D----GQ-----S--EN----------E----GSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~--------~----~~-----~--~~----------~----~~fD~v~~d~~~~-   63 (143)
                      .+..+|||+|||+|.++..+++....        .    +.     .  ..          .    ++||+|++|+... 
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~  103 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKV  103 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCC
Confidence            46789999999999999999876110        0    00     0  00          0    4899999986321 


Q ss_pred             ------c-------hHHHHHHHHhcccCCeEEEEe
Q 032292           64 ------N-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ------~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                            +       ....++.+.++|+|||.+++.
T Consensus       104 ~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A          104 SGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                  1       124567778999999999874

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.81  E-value=2.5e-08  Score=69.45  Aligned_cols=76  Identities=17%  Similarity=0.040  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SEN   49 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~   49 (143)
                      +...+.+.......++.+|||+|||+|..+..+++  +. .+                                   +..
T Consensus        21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~   97 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RC-KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLD   97 (183)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TS-SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccccc
Confidence            34445555555566778999999999999999987  21 11                                   122


Q ss_pred             CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      .++||+|+++.. .+....++.+.++  |||.+++..
T Consensus        98 ~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~  131 (183)
T 2yxd_A           98 KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANT  131 (183)
T ss_dssp             GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred             CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEe
Confidence            368999999877 6777888888887  999998864

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.81  E-value=1e-08  Score=73.86  Aligned_cols=79  Identities=15%  Similarity=0.096  Sum_probs=56.3

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC------CCCc---------cCCCCceeEEEEcCC--ccchHHHHHH
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP------EDGQ---------SENEGSFDYAFVDAD--KDNYCNYHER   71 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~------~~~~---------~~~~~~fD~v~~d~~--~~~~~~~~~~   71 (143)
                      .++..+....++.+|||||||+|..+..++..+-      ....         +...++||+|++...  ..+....++.
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~v~~~D~s~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~  136 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEE  136 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCCSCEEEEESSCSSTTEEESCTTSCSCCTTCEEEEEEESCCCSSCHHHHHHH
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhhccEEEEeCCCCCceEEEeccccCCCCCCCEeEEEEehhccccCHHHHHHH
Confidence            3555555555678999999999999988752210      0000         234578999998653  2456788999


Q ss_pred             HHhcccCCeEEEEecc
Q 032292           72 LMKLLKVGGIAVYDNT   87 (143)
Q Consensus        72 ~~~~L~~gG~li~d~~   87 (143)
                      +.++|+|||.+++.+.
T Consensus       137 ~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A          137 ANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             HHHHEEEEEEEEEEEC
T ss_pred             HHHhCCCCeEEEEEEc
Confidence            9999999999988643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.81  E-value=4.4e-09  Score=79.18  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCc
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGS   52 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~   52 (143)
                      +++...+...+..+|||+|||+|..+..+++.+.+.++                                    ....++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  179 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  179 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence            34444445567789999999999999999987322111                                    112357


Q ss_pred             eeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        53 fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ||+|+++.  .+....++.+.+.|+|||++++..
T Consensus       180 fD~Vi~~~--~~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          180 YDAVIADI--PDPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             EEEEEECC--SCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEEcC--cCHHHHHHHHHHHcCCCCEEEEEe
Confidence            99999964  345678899999999999998753

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.81  E-value=1.4e-08  Score=70.22  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c---CCCCceeEEEEcCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S---ENEGSFDYAFVDAD   61 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~---~~~~~fD~v~~d~~   61 (143)
                      +.++|||+|||+|..+..+++..+. ..                                  +   ...++||+|+++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~  119 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP  119 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence            6789999999999999999887432 10                                  0   01237999999853


Q ss_pred             c-cchHHHHHHHH--hcccCCeEEEEec
Q 032292           62 K-DNYCNYHERLM--KLLKVGGIAVYDN   86 (143)
Q Consensus        62 ~-~~~~~~~~~~~--~~L~~gG~li~d~   86 (143)
                      . ......++.+.  ++|+|||++++..
T Consensus       120 ~~~~~~~~~~~~~~~~~L~~gG~~~~~~  147 (171)
T 1ws6_A          120 YAMDLAALFGELLASGLVEAGGLYVLQH  147 (171)
T ss_dssp             TTSCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred             CchhHHHHHHHHHhhcccCCCcEEEEEe
Confidence            2 34556677777  9999999998854

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.81  E-value=1.7e-08  Score=81.85  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c-CC
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S-EN   49 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~-~~   49 (143)
                      ....++..++...++.+|||+|||+|..|+.+|+.++..+.                                   . ..
T Consensus        88 ~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~  167 (464)
T 3m6w_A           88 PSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF  167 (464)
T ss_dssp             TTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH
T ss_pred             HHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc
Confidence            34456666666777899999999999999999998875443                                   1 13


Q ss_pred             CCceeEEEEcCCc---------cc----------------hHHHHHHHHhcccCCeEEEEecc
Q 032292           50 EGSFDYAFVDADK---------DN----------------YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        50 ~~~fD~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .++||.|++|+.-         .+                ....++.+.++|+|||+|++...
T Consensus       168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            5789999998531         00                14577888899999999998643

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.81  E-value=1.7e-08  Score=75.95  Aligned_cols=80  Identities=16%  Similarity=0.164  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c
Q 032292            5 TIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~   47 (143)
                      |++-.++..+...  .++.+|||+|||+|..++.+++..+. .+                                   .
T Consensus        93 ~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~  171 (276)
T 2b3t_A           93 PDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA  171 (276)
T ss_dssp             TTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG
T ss_pred             chHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh
Confidence            4455555555554  45689999999999999999987653 11                                   1


Q ss_pred             CCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           48 ENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...++||+|+++..-                            ..+...++.+.++|+|||++++.
T Consensus       172 ~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          172 LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            225689999997210                            23466788889999999999885

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.81  E-value=1.5e-08  Score=71.90  Aligned_cols=69  Identities=12%  Similarity=0.118  Sum_probs=50.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC--------Cc-----------------c-C----------------CCCceeE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED--------GQ-----------------S-E----------------NEGSFDY   55 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~--------~~-----------------~-~----------------~~~~fD~   55 (143)
                      .+..+|||+|||+|..+..+++.++..        ++                 . .                ..++||+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~  100 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADV  100 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEECSCCTTSHHHHHHHHHHSGGGCEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEEEeccCCCHHHHHHHHHhcCCCCCcE
Confidence            457899999999999999999987531        22                 1 1                1247999


Q ss_pred             EEEcCCcc-------ch-------HHHHHHHHhcccCCeEEEEec
Q 032292           56 AFVDADKD-------NY-------CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        56 v~~d~~~~-------~~-------~~~~~~~~~~L~~gG~li~d~   86 (143)
                      |+++....       +.       ...++.+.++|+|||.+++..
T Consensus       101 V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A          101 ILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            99875211       11       356888899999999998853

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.80  E-value=7.7e-09  Score=75.25  Aligned_cols=74  Identities=23%  Similarity=0.342  Sum_probs=53.2

Q ss_pred             HHHHHHH-hhcCCCEEEEEeccccHHHHHHHhhCC----CCCc---------------------c---------------
Q 032292            9 QLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQ---------------------S---------------   47 (143)
Q Consensus         9 ~~l~~l~-~~~~~~~vLeiG~g~G~~t~~la~~~~----~~~~---------------------~---------------   47 (143)
                      .++..+. ...+..+|||||||+|+.+..+++...    +.++                     .               
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            3344443 355678999999999999999998874    2221                     0               


Q ss_pred             ---------CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           48 ---------ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        48 ---------~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                               ...++||+|+++......   ++.+.++|+|||++++.
T Consensus       149 ~~~~~~~~~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          149 IYQVNEEEKKELGLFDAIHVGASASEL---PEILVDLLAENGKLIIP  192 (227)
T ss_dssp             GGGCCHHHHHHHCCEEEEEECSBBSSC---CHHHHHHEEEEEEEEEE
T ss_pred             hHhcccccCccCCCcCEEEECCchHHH---HHHHHHhcCCCcEEEEE
Confidence                     112579999998765443   46788999999999874

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.79  E-value=1.6e-08  Score=75.28  Aligned_cols=67  Identities=18%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------cCCCCceeEEEEcCCc----cchHH
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------SENEGSFDYAFVDADK----DNYCN   67 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------~~~~~~fD~v~~d~~~----~~~~~   67 (143)
                      ++.+|||||||+|..+..+++.... .+.                          +...++||+|++....    .+...
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~  133 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDK  133 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhccccHHH
Confidence            6789999999999999999876211 000                          2235789999986532    34577


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 032292           68 YHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        68 ~~~~~~~~L~~gG~li~d   85 (143)
                      .++++.++|+|||++++.
T Consensus       134 ~l~~~~~~LkpgG~l~~~  151 (260)
T 2avn_A          134 AFSEIRRVLVPDGLLIAT  151 (260)
T ss_dssp             HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEE
Confidence            899999999999999875

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.79  E-value=9.5e-09  Score=74.70  Aligned_cols=74  Identities=22%  Similarity=0.297  Sum_probs=52.7

Q ss_pred             HHHHHHH-hhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------
Q 032292            9 QLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------   46 (143)
Q Consensus         9 ~~l~~l~-~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------   46 (143)
                      .++..+. ...+..+|||||||+|+.+..+++..++.++                                         
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            3444443 2456789999999999999999987632221                                         


Q ss_pred             cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....++||+|+++......   ++.+.++|+|||++++.
T Consensus       146 ~~~~~~fD~i~~~~~~~~~---~~~~~~~LkpgG~lv~~  181 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILP  181 (226)
T ss_dssp             CGGGCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             cccCCCcCEEEECCchHHH---HHHHHHhcCCCcEEEEE
Confidence            0124579999998754433   45778999999999885

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.79  E-value=8.9e-09  Score=75.75  Aligned_cols=70  Identities=7%  Similarity=0.128  Sum_probs=52.2

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC--Cc------------------------------cCCCCceeEEEEcCCcc--
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED--GQ------------------------------SENEGSFDYAFVDADKD--   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~--~~------------------------------~~~~~~fD~v~~d~~~~--   63 (143)
                      .++.+|||||||+|..+..+++.....  +.                              +...++||+|++.....  
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  171 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhC
Confidence            357899999999999999988764210  00                              22357899999876432  


Q ss_pred             ---chHHHHHHHHhcccCCeEEEEecc
Q 032292           64 ---NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ---~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                         +....++.+.++|+|||++++.+.
T Consensus       172 ~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          172 TDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence               345688999999999999988653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.79  E-value=1.6e-08  Score=80.01  Aligned_cols=82  Identities=18%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             ChHHHHHHHHHHhhc-----CCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------------
Q 032292            4 LTIHGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~-----~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------------   46 (143)
                      .+.+..++..+....     ++.+|||+|||+|..++.+++.... .+.                               
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~  292 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA  292 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhc
Confidence            455566677766543     5679999999999999999986211 000                               


Q ss_pred             cCCCCceeEEEEcCC--------ccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 SENEGSFDYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~--------~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....++||+|+++..        .......++.+.++|+|||++++.
T Consensus       293 ~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          293 LTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             SCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            112368999999732        223457889999999999999873

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.79  E-value=1.8e-08  Score=73.45  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=55.0

Q ss_pred             HHHHHHHHhhc--CCCEEEEEeccccHHHHHHHhhCCC----CC-----------------c----------cCCCCcee
Q 032292            8 GQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPE----DG-----------------Q----------SENEGSFD   54 (143)
Q Consensus         8 ~~~l~~l~~~~--~~~~vLeiG~g~G~~t~~la~~~~~----~~-----------------~----------~~~~~~fD   54 (143)
                      .+++..++...  ++.+|||+|||+|..+..+++....    +.                 .          ....++||
T Consensus        24 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD  103 (246)
T 1y8c_A           24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFD  103 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEE
T ss_pred             HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCce
Confidence            34455554443  6789999999999999999876321    00                 0          11237899


Q ss_pred             EEEEcC-Cc------cchHHHHHHHHhcccCCeEEEEe
Q 032292           55 YAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        55 ~v~~d~-~~------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +|++.. ..      .+....++.+.++|+|||+++++
T Consensus       104 ~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             EEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            999976 21      24456888999999999999985

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.79  E-value=1.1e-08  Score=75.97  Aligned_cols=68  Identities=16%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------cCCCCceeEEEEcCC-c------cc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------SENEGSFDYAFVDAD-K------DN   64 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------~~~~~~fD~v~~d~~-~------~~   64 (143)
                      ++.+|||||||+|..+..+++.... .+.                          ....++||+|++..+ .      .+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~  129 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAE  129 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHH
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHHH
Confidence            4589999999999999999876431 000                          112678999998762 1      23


Q ss_pred             hHHHHHHHHhcccCCeEEEEec
Q 032292           65 YCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ....++.+.++|+|||+++++.
T Consensus       130 ~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          130 LDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             HHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHHHHhcCCCcEEEEEe
Confidence            4467889999999999999974

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.78  E-value=1.5e-08  Score=73.70  Aligned_cols=66  Identities=15%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c--CCCCceeEEEEcC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S--ENEGSFDYAFVDA   60 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~--~~~~~fD~v~~d~   60 (143)
                      +..+|||||||+|..++.+|+..+. ..                                    +  ...++||.|++..
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            5679999999999999999998763 11                                    1  2357899998863


Q ss_pred             Ccc-----------chHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKD-----------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~-----------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...           .+...++.+.++|+|||.+++.
T Consensus       117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            211           1467899999999999999874

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.78  E-value=1.1e-08  Score=80.75  Aligned_cols=66  Identities=12%  Similarity=0.095  Sum_probs=50.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEEEEc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v~~d   59 (143)
                      .+..+|||+|||+|..++.+++..+. .+                                      ....++||+|+++
T Consensus       221 ~~~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~n  299 (375)
T 4dcm_A          221 NLEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCN  299 (375)
T ss_dssp             SCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEEC
T ss_pred             cCCCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEEC
Confidence            34589999999999999999998753 21                                      1234689999997


Q ss_pred             CCc--------cchHHHHHHHHhcccCCeEEEE
Q 032292           60 ADK--------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        60 ~~~--------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ...        ......++.+.++|+|||++++
T Consensus       300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i  332 (375)
T 4dcm_A          300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYI  332 (375)
T ss_dssp             CCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence            432        1223578999999999999987

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.78  E-value=1.4e-08  Score=73.97  Aligned_cols=78  Identities=27%  Similarity=0.266  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CC-------------------c---------c-C-CCCce
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DG-------------------Q---------S-E-NEGSF   53 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~-------------------~---------~-~-~~~~f   53 (143)
                      +.....+...+...+..+|||||||+|..+..+++.... .+                   .         . . ..++|
T Consensus        56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f  135 (231)
T 1vbf_A           56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY  135 (231)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence            444555555556667789999999999999999987421 00                   0         1 1 24689


Q ss_pred             eEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           54 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        54 D~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |+|+++.......   +.+.++|+|||++++.
T Consensus       136 D~v~~~~~~~~~~---~~~~~~L~pgG~l~~~  164 (231)
T 1vbf_A          136 DRVVVWATAPTLL---CKPYEQLKEGGIMILP  164 (231)
T ss_dssp             EEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             cEEEECCcHHHHH---HHHHHHcCCCcEEEEE
Confidence            9999987544333   4678999999999875

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.76  E-value=2.6e-08  Score=69.90  Aligned_cols=78  Identities=17%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCC-CC--------------c--------cCCCCceeEEEEc
Q 032292            5 TIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPE-DG--------------Q--------SENEGSFDYAFVD   59 (143)
Q Consensus         5 ~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~-~~--------------~--------~~~~~~fD~v~~d   59 (143)
                      +++..++.. +..  .++.+|||+|||+|..++.+++.. . .+              .        +...++||+|+++
T Consensus         8 ~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n   85 (170)
T 3q87_B            8 EDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFN   85 (170)
T ss_dssp             HHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEEC
T ss_pred             ccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEEC
Confidence            455555555 444  567899999999999999998864 1 00              0        2234789999997


Q ss_pred             CCcc------------chHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKD------------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~------------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....            +....++.+.+.+ |||.+++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~  122 (170)
T 3q87_B           86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLL  122 (170)
T ss_dssp             CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEE
T ss_pred             CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEE
Confidence            5321            2356778888888 99999874

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.76  E-value=2.1e-08  Score=72.43  Aligned_cols=78  Identities=18%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             HHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeE
Q 032292           10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDY   55 (143)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~   55 (143)
                      ++..+... .++.+|||+|||+|..+..+++..+. ..                                 +...++||+
T Consensus        28 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~  106 (227)
T 1ve3_A           28 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDY  106 (227)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEE
T ss_pred             HHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEE
Confidence            33444433 34789999999999999999887541 00                                 123468999


Q ss_pred             EEEcCC--c---cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           56 AFVDAD--K---DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        56 v~~d~~--~---~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      |++...  .   .+....++.+.++|+|||++++....
T Consensus       107 v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          107 VIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            998754  2   23456788999999999999876443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.75  E-value=2.2e-08  Score=77.37  Aligned_cols=79  Identities=16%  Similarity=0.186  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------   46 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------   46 (143)
                      |.....+...+...++.+|||+|||+|+.++.+++..++.++                                      
T Consensus        91 ~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~  170 (336)
T 2b25_A           91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  170 (336)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence            343444555556777889999999999999999987532111                                      


Q ss_pred             -------c---C-CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 -------S---E-NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 -------~---~-~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                             .   . ..++||+|+++..  .+...++.+.++|+|||++++.
T Consensus       171 ~~~~d~~~~~~~~~~~~fD~V~~~~~--~~~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          171 FIHKDISGATEDIKSLTFDAVALDML--NPHVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             EEESCTTCCC-------EEEEEECSS--STTTTHHHHGGGEEEEEEEEEE
T ss_pred             EEECChHHcccccCCCCeeEEEECCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence                   0   0 1347999999764  3344788999999999999864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.75  E-value=2.1e-08  Score=72.60  Aligned_cols=70  Identities=23%  Similarity=0.239  Sum_probs=51.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC----C----------------C-------c-----------cCCCCceeEEEEc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE----D----------------G-------Q-----------SENEGSFDYAFVD   59 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~----~----------------~-------~-----------~~~~~~fD~v~~d   59 (143)
                      .+..+|||+|||+|..+..+++....    +                +       .           +...++||+|++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  108 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ  108 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence            46789999999999999999876211    0                0       0           2235789999987


Q ss_pred             CCcc---chH---HHHHHHHhcccCCeEEEEecc
Q 032292           60 ADKD---NYC---NYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        60 ~~~~---~~~---~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ....   +..   ..++.+.++|+|||++++.+.
T Consensus       109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            5322   223   789999999999999988643

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.74  E-value=9.5e-09  Score=77.56  Aligned_cols=79  Identities=20%  Similarity=0.187  Sum_probs=58.8

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cC----
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SE----   48 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~----   48 (143)
                      .++..++...+..+|||+|||+|..|..+++.++..++                                    ..    
T Consensus        73 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~  152 (274)
T 3ajd_A           73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLK  152 (274)
T ss_dssp             GHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhh
Confidence            45555566667789999999999999999987754232                                    11    


Q ss_pred             CCCceeEEEEcCCc---------------------cchHHHHHHHHhcccCCeEEEEecc
Q 032292           49 NEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        49 ~~~~fD~v~~d~~~---------------------~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ..++||+|++|..-                     ..+...++.+.++|+|||++++...
T Consensus       153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            25689999998321                     2346678889999999999998643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.74  E-value=1.6e-08  Score=72.33  Aligned_cols=77  Identities=13%  Similarity=0.023  Sum_probs=54.2

Q ss_pred             HHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEE
Q 032292           10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYA   56 (143)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v   56 (143)
                      +...+... .++.+|||+|||+|..+..+++.......                                +...++||+|
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v  111 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVV  111 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEE
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEE
Confidence            44444443 45689999999999999999887432100                                2234689999


Q ss_pred             EEcCCc------------------cchHHHHHHHHhcccCCeEEEEec
Q 032292           57 FVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        57 ~~d~~~------------------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ++....                  .+....++.+.++|+|||++++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  159 (215)
T 2pxx_A          112 LEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT  159 (215)
T ss_dssp             EEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence            975421                  133567889999999999998754

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.74  E-value=7.1e-08  Score=70.44  Aligned_cols=69  Identities=16%  Similarity=0.035  Sum_probs=50.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------------cCCCCceeEEEEcCCc---
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------------SENEGSFDYAFVDADK---   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------------~~~~~~fD~v~~d~~~---   62 (143)
                      ++.+|||||||+|..+..+++.... .+.                                ....++||+|++....   
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~  145 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI  145 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence            4579999999999999999764211 000                                1234589999986532   


Q ss_pred             --cchHHHHHHHHhcccCCeEEEEecc
Q 032292           63 --DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        63 --~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                        .+...+++.+.++|+|||++++...
T Consensus       146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          146 EPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             CGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence              2567789999999999999987543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.74  E-value=2e-08  Score=72.85  Aligned_cols=79  Identities=22%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC-------------Cc---------cCCCCceeEEEEcCCc---cc
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-------------GQ---------SENEGSFDYAFVDADK---DN   64 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~-------------~~---------~~~~~~fD~v~~d~~~---~~   64 (143)
                      .+..+....++.+|||+|||+|..+..+++...-+             ..         +...++||+|++....   .+
T Consensus        38 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  117 (219)
T 1vlm_A           38 ELQAVKCLLPEGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDD  117 (219)
T ss_dssp             HHHHHHHHCCSSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred             HHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccC
Confidence            33445555568999999999999998876531000             00         2335689999987642   35


Q ss_pred             hHHHHHHHHhcccCCeEEEEeccC
Q 032292           65 YCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ....++.+.+.|+|||.+++....
T Consensus       118 ~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          118 PERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEeC
Confidence            677899999999999999886543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.73  E-value=2.1e-08  Score=75.74  Aligned_cols=76  Identities=14%  Similarity=0.092  Sum_probs=53.5

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------cC-----CCCceeEE
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------SE-----NEGSFDYA   56 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------~~-----~~~~fD~v   56 (143)
                      +.+...+...+..+|||||||+|..++.+++.... .+.                          ..     ..++||+|
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~V  114 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFV  114 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEE
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEE
Confidence            33334445566789999999999999999986321 000                          11     14689999


Q ss_pred             EEcCCcc-----chHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADKD-----NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~~-----~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +++....     +....+..+.++| |||++++.
T Consensus       115 v~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          115 LNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             EEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            9986432     3345788888999 99999875

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.73  E-value=3.8e-08  Score=71.59  Aligned_cols=71  Identities=14%  Similarity=0.120  Sum_probs=51.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CC------------------c--------cCCCCceeEEEEcCCc-------c
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DG------------------Q--------SENEGSFDYAFVDADK-------D   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~------------------~--------~~~~~~fD~v~~d~~~-------~   63 (143)
                      .++.+|||+|||+|..+..+++..+. .+                  .        ....++||+|++....       .
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~  118 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTE  118 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHH
Confidence            46789999999999999999887541 00                  0        1125689999954321       2


Q ss_pred             chHHHHHHHHhcccCCeEEEEeccC
Q 032292           64 NYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +....++.+.++|+|||+++++...
T Consensus       119 ~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          119 ELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEecc
Confidence            3456888999999999999997543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.72  E-value=4.4e-08  Score=71.45  Aligned_cols=75  Identities=27%  Similarity=0.281  Sum_probs=52.1

Q ss_pred             HHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEE
Q 032292           10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAF   57 (143)
Q Consensus        10 ~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~   57 (143)
                      ++..+... .+..+|||+|||+|..+..+++. .. .+.                              ....++||+|+
T Consensus        23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~  101 (243)
T 3d2l_A           23 WVAWVLEQVEPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAIT  101 (243)
T ss_dssp             HHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEE
T ss_pred             HHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEE
Confidence            33444433 34689999999999999998876 11 000                              11247899999


Q ss_pred             EcCCc-------cchHHHHHHHHhcccCCeEEEEe
Q 032292           58 VDADK-------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~-------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +..+.       .+....++.+.++|+|||+++++
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          102 ILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             ECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            86521       23456788899999999999984

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.72  E-value=1.7e-08  Score=78.80  Aligned_cols=70  Identities=17%  Similarity=0.137  Sum_probs=51.4

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCC--C----c----------------------------cCCCCceeEEEEcC-
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPED--G----Q----------------------------SENEGSFDYAFVDA-   60 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~--~----~----------------------------~~~~~~fD~v~~d~-   60 (143)
                      ...+.++|||||||+|..+..+++.-...  +    .                            +...++||+|+++. 
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            34578999999999999999999872100  0    0                            12347899999864 


Q ss_pred             -----CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 -----DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 -----~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                           ........++.+.++|+|||+++.+
T Consensus       143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence                 1234566788888999999999855

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.72  E-value=1.7e-08  Score=75.54  Aligned_cols=77  Identities=13%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC--------------------C--------c---------c---
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED--------------------G--------Q---------S---   47 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~--------------------~--------~---------~---   47 (143)
                      +.+|..++...+..+|||+|||+|..++.+++..+..                    .        +         .   
T Consensus        25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAK  104 (260)
T ss_dssp             HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred             HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhh
Confidence            3455555555567899999999999999999886420                    0        0         0   


Q ss_pred             ------CCCCceeEEEEcCC---------------------ccchHHHHHHHHhcccCCeEEEE
Q 032292           48 ------ENEGSFDYAFVDAD---------------------KDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        48 ------~~~~~fD~v~~d~~---------------------~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                            ...++||+|+++..                     ...+..+++.+.++|+|||.+++
T Consensus       105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence                  12467999999721                     12356778889999999999986

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.72  E-value=2.5e-08  Score=76.49  Aligned_cols=67  Identities=15%  Similarity=0.211  Sum_probs=50.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cC-CCCceeE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SE-NEGSFDY   55 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~-~~~~fD~   55 (143)
                      .++++|||||||+|..+..+++..+. .+                                         .. ..++||+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTV-EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            46889999999999999999876432 11                                         11 3678999


Q ss_pred             EEEcCCccch-------HHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKDNY-------CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~~~-------~~~~~~~~~~L~~gG~li~d   85 (143)
                      |++|......       ..+++.+.++|+|||++++.
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9998743211       47889999999999999885

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.71  E-value=2.1e-08  Score=74.26  Aligned_cols=66  Identities=17%  Similarity=0.061  Sum_probs=48.2

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCC-ceeEEEEcCCccch
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEG-SFDYAFVDADKDNY   65 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~-~fD~v~~d~~~~~~   65 (143)
                      +.++|||||||+|..+..+++.......                                ..... .||.+.+|......
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l  116 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL  116 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH
Confidence            4569999999999999999887321000                                00111 36777777666666


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 032292           66 CNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~   84 (143)
                      ...++++.++|+|||.+++
T Consensus       117 ~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A          117 DLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             GGTHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHhccCCCEEEE
Confidence            7789999999999999987

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.71  E-value=2.1e-08  Score=77.88  Aligned_cols=68  Identities=19%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC-Cc-------------------------------cCCCCceeEEEEcCCcc--
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED-GQ-------------------------------SENEGSFDYAFVDADKD--   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~-~~-------------------------------~~~~~~fD~v~~d~~~~--   63 (143)
                      ..+.+|||+|||+|..+..+++..+.. ..                               ....++||+|+++....  
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Iv~~~~~~~g  274 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDG  274 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEEEECCCCCSS
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEEEECCCcccC
Confidence            356799999999999999999887531 11                               12356899999975322  


Q ss_pred             ------chHHHHHHHHhcccCCeEEEEe
Q 032292           64 ------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                            .....++++.++|+|||.+++-
T Consensus       275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          275 MQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             SHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence                  2356788999999999999763

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.71  E-value=4.6e-08  Score=78.67  Aligned_cols=79  Identities=18%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC-----------------------------C----c-------cC--
Q 032292           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-----------------------------G----Q-------SE--   48 (143)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~-----------------------------~----~-------~~--   48 (143)
                      +...+...+..+|||||||+|+.++.+|+..+..                             +    .       ..  
T Consensus       234 ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~  313 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD  313 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccc
Confidence            3334455677899999999999999999864321                             0    0       01  


Q ss_pred             ------CCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           49 ------NEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        49 ------~~~~fD~v~~d~~--~~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                            ..++||+|+++..  ..+....++++.+.|+|||.+++.+.+.
T Consensus       314 ~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          314 NNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             CHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             ccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence                  0257999998632  2455677889999999999999976554

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.71  E-value=2.8e-08  Score=71.28  Aligned_cols=68  Identities=21%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC----C---------------Cc---------cCCCCceeEEEEcCCc---cchHH
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE----D---------------GQ---------SENEGSFDYAFVDADK---DNYCN   67 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~----~---------------~~---------~~~~~~fD~v~~d~~~---~~~~~   67 (143)
                      ++.+|||+|||+|..+..+  ....    +               ..         +...++||+|++....   .+...
T Consensus        36 ~~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~  113 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVER  113 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCHHH
T ss_pred             CCCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCHHH
Confidence            6789999999999998876  1100    0               00         2335689999987532   35678


Q ss_pred             HHHHHHhcccCCeEEEEeccC
Q 032292           68 YHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        68 ~~~~~~~~L~~gG~li~d~~~   88 (143)
                      .++++.++|+|||.+++....
T Consensus       114 ~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A          114 VLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHcCCCCEEEEEecC
Confidence            899999999999999886543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.71  E-value=2.2e-08  Score=72.14  Aligned_cols=68  Identities=15%  Similarity=0.090  Sum_probs=51.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------cCCCCceeEEEEcCCc---cch
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------SENEGSFDYAFVDADK---DNY   65 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~~~~~~fD~v~~d~~~---~~~   65 (143)
                      .++.+|||+|||+|..+..+++. +....                             +..+++||+|++....   .+.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~  109 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDP  109 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCCH
Confidence            46789999999999999999876 32100                             1224689999987532   345


Q ss_pred             HHHHHHHHhcccCCeEEEEec
Q 032292           66 CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...++.+.++|+|||++++..
T Consensus       110 ~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A          110 WAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             HHHHHHTGGGEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEe
Confidence            678899999999999998864

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.70  E-value=2.3e-08  Score=75.47  Aligned_cols=78  Identities=13%  Similarity=0.096  Sum_probs=58.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cC-CCCc
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SE-NEGS   52 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~-~~~~   52 (143)
                      .+.+..+....+..+|||+|||+|..++.+|+..+. ++                                  .. ..++
T Consensus       108 ~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~  186 (272)
T 3a27_A          108 EERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDV  186 (272)
T ss_dssp             HHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTC
T ss_pred             HHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCC
Confidence            344444555567789999999999999999998652 21                                  11 1357


Q ss_pred             eeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        53 fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ||+|++|... .+...++.+.+.|+|||++++...
T Consensus       187 ~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          187 ADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             EEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             ceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            9999999754 567788899999999999987644

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.70  E-value=3.1e-08  Score=78.07  Aligned_cols=73  Identities=16%  Similarity=0.292  Sum_probs=55.4

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------------------
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------------------   46 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------------------   46 (143)
                      ..++.+|||||||+|..+..+++..++.++                                                  
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            346789999999999999999887532111                                                  


Q ss_pred             cCCCCceeEEEEcCCc---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           47 SENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      +..+++||+|++....   .+....++++.++|+|||++++.+...
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            0113589999988642   456788999999999999999876543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.70  E-value=4.5e-08  Score=72.87  Aligned_cols=63  Identities=24%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------cCCCCceeEEEEcCCccchH
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------SENEGSFDYAFVDADKDNYC   66 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~~~~~~fD~v~~d~~~~~~~   66 (143)
                      .++.+|||||||+|..+..+++.++. ..                               +...++||+|++....    
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----
Confidence            45789999999999999999987642 11                               2235689999976542    


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 032292           67 NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        67 ~~~~~~~~~L~~gG~li~d   85 (143)
                      ..++++.++|+|||.+++.
T Consensus       159 ~~l~~~~~~L~pgG~l~~~  177 (269)
T 1p91_A          159 CKAEELARVVKPGGWVITA  177 (269)
T ss_dssp             CCHHHHHHHEEEEEEEEEE
T ss_pred             hhHHHHHHhcCCCcEEEEE
Confidence            2477889999999999875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.70  E-value=3e-08  Score=75.29  Aligned_cols=77  Identities=17%  Similarity=0.216  Sum_probs=55.4

Q ss_pred             HHHHHHHh--hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------
Q 032292            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------   46 (143)
Q Consensus         9 ~~l~~l~~--~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------   46 (143)
                      +++..++.  ..++++|||||||+|..+..+++..+. .+                                        
T Consensus        66 e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~  144 (283)
T 2i7c_A           66 EMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSV-ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF  144 (283)
T ss_dssp             HHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH
T ss_pred             HHHHHHHHhcCCCCCeEEEEeCCcCHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH
Confidence            34444432  346899999999999999999876432 11                                        


Q ss_pred             -cCCCCceeEEEEcCCcc-----c-h-HHHHHHHHhcccCCeEEEEec
Q 032292           47 -SENEGSFDYAFVDADKD-----N-Y-CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        47 -~~~~~~fD~v~~d~~~~-----~-~-~~~~~~~~~~L~~gG~li~d~   86 (143)
                       +...++||+|++|....     . + ..+++.+.++|+|||++++..
T Consensus       145 l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          145 LENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             HHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence             11256899999986321     1 1 578999999999999999863

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.68  E-value=1.1e-07  Score=74.42  Aligned_cols=72  Identities=18%  Similarity=0.166  Sum_probs=54.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cC---CCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SE---NEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~---~~~~fD~v~~d~   60 (143)
                      .++.+|||||||+|..+..+++..+. .+                                  ..   .+++||+|++..
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKE-VEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTT-CEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            46799999999999999999998764 11                                  11   236899999865


Q ss_pred             Ccc-----chHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           61 DKD-----NYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        61 ~~~-----~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      ...     +....++++.+.|+|||.+++.+..+.
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (363)
T 3dp7_A          257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD  291 (363)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence            332     224578899999999999987665543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.67  E-value=1.5e-08  Score=82.09  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cC
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SE   48 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~   48 (143)
                      ....++..++...++.+|||+|||+|..|+.+|+.++..+.                                     ..
T Consensus        92 ~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A           92 PSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH  171 (456)
T ss_dssp             TTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh
Confidence            34556666777777899999999999999999988764333                                     11


Q ss_pred             CCCceeEEEEcCCc---------c----------------chHHHHHHHHhcccCCeEEEEecc
Q 032292           49 NEGSFDYAFVDADK---------D----------------NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        49 ~~~~fD~v~~d~~~---------~----------------~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ..++||.|++|+.-         .                .....++.+.++|+|||+|++...
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            34789999998631         0                011567788899999999998644

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.67  E-value=7e-08  Score=78.53  Aligned_cols=82  Identities=16%  Similarity=0.227  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhhc--CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c
Q 032292            6 IHGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S   47 (143)
Q Consensus         6 ~~~~~l~~l~~~~--~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~   47 (143)
                      ....++..++...  +..+|||+|||+|..|..+|+.++..+.                                    .
T Consensus       102 ~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~  181 (479)
T 2frx_A          102 ASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFG  181 (479)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHH
T ss_pred             HHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhh
Confidence            3445555566655  7789999999999999999998764333                                    0


Q ss_pred             C-CCCceeEEEEcCCc---------cc----------------hHHHHHHHHhcccCCeEEEEecc
Q 032292           48 E-NEGSFDYAFVDADK---------DN----------------YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        48 ~-~~~~fD~v~~d~~~---------~~----------------~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      . ..++||.|++|+.-         .+                ....++.+.++|||||+|++...
T Consensus       182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            1 34689999998421         00                13467788899999999998654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.66  E-value=2.8e-08  Score=72.51  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=52.6

Q ss_pred             HHHHHHHH-hhcCCCEEEEEeccccHHHHHHHhhCCC-----CCc-----------------------------------
Q 032292            8 GQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQ-----------------------------------   46 (143)
Q Consensus         8 ~~~l~~l~-~~~~~~~vLeiG~g~G~~t~~la~~~~~-----~~~-----------------------------------   46 (143)
                      ..++..+. ...+..+|||||||+|+.+..+++..+.     .++                                   
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            34444443 3456689999999999999999886431     011                                   


Q ss_pred             -----cCC-CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 -----SEN-EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 -----~~~-~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                           ... .++||+|+++......   .+.+.+.|+|||++++.
T Consensus       152 ~d~~~~~~~~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          152 GDGRKGYPPNAPYNAIHVGAAAPDT---PTELINQLASGGRLIVP  193 (227)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             CCcccCCCcCCCccEEEECCchHHH---HHHHHHHhcCCCEEEEE
Confidence                 011 2689999998765443   36778999999999885

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.66  E-value=5.2e-08  Score=73.09  Aligned_cols=69  Identities=13%  Similarity=0.075  Sum_probs=50.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cC-CCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SE-NEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~-~~~~fD~v~~d~~   61 (143)
                      .++.+|||||||+|..+..+++.......                                   +. ..++||+|++...
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            56789999999999999888875321000                                   12 3568999998754


Q ss_pred             c-------cchHHHHHHHHhcccCCeEEEEec
Q 032292           62 K-------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        62 ~-------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      .       .+....++.+.++|+|||++++..
T Consensus       143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            2       234568889999999999998763

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.66  E-value=3.7e-08  Score=72.93  Aligned_cols=68  Identities=18%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC----------------------------Cc--------------c--CCCCce
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED----------------------------GQ--------------S--ENEGSF   53 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~----------------------------~~--------------~--~~~~~f   53 (143)
                      .+..+|||||||+|..++.+|+..+..                            +.              +  ...++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            356789999999999999999886531                            00              1  235789


Q ss_pred             eEEEEcCCccc-----------hHHHHHHHHhcccCCeEEEEe
Q 032292           54 DYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        54 D~v~~d~~~~~-----------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |.|++......           +...++.+.++|+|||.+++.
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            99987642111           246889999999999999864

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.65  E-value=5.5e-08  Score=70.07  Aligned_cols=78  Identities=10%  Similarity=-0.050  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC------------------C----------------Cc----
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------------------D----------------GQ----   46 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~------------------~----------------~~----   46 (143)
                      |.-.+++..+ ...++.+|||+|||+|..+.+||+.-..                  .                ..    
T Consensus         9 ~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~   87 (203)
T 1pjz_A            9 KDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   87 (203)
T ss_dssp             HHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE
Confidence            3334444433 2346789999999999999999986210                  0                00    


Q ss_pred             -----cCC--C-CceeEEEEcCCcc-----chHHHHHHHHhcccCCeEEE
Q 032292           47 -----SEN--E-GSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        47 -----~~~--~-~~fD~v~~d~~~~-----~~~~~~~~~~~~L~~gG~li   83 (143)
                           ...  . ++||+|++.+...     ....+++++.++|||||.++
T Consensus        88 ~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~  137 (203)
T 1pjz_A           88 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL  137 (203)
T ss_dssp             EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred             ECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                 001  1 5799999755321     23457889999999999843

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.65  E-value=1.2e-07  Score=71.00  Aligned_cols=80  Identities=10%  Similarity=0.016  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-----------------CC---------------------c-
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DG---------------------Q-   46 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-----------------~~---------------------~-   46 (143)
                      .-.+++..+....++.+|||+|||+|..+.+||+.--.                 .+                     . 
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            33444444433346789999999999999999876210                 00                     0 


Q ss_pred             -----------cCC-CCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292           47 -----------SEN-EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 -----------~~~-~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                                 +.. .++||+|+..+..     .....+++.+.++|+|||++++-
T Consensus       135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             EEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                       111 2789999975432     23456899999999999998643

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.65  E-value=3.1e-08  Score=71.56  Aligned_cols=67  Identities=10%  Similarity=0.002  Sum_probs=47.3

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYA   56 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v   56 (143)
                      ..+..+|||||||+|..+..+++..+. ++                                        +...++ |.|
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v  102 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GEL  102 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTT-EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEE
Confidence            456789999999999999999998642 11                                        112233 666


Q ss_pred             EEcCCc--------cchHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADK--------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~--------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++....        .+....++++.++|||||.+++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            643321        12256789999999999999884

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.65  E-value=5.5e-08  Score=75.24  Aligned_cols=72  Identities=15%  Similarity=0.036  Sum_probs=51.1

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCCC------c----------------------------cCCCCceeEEEEc
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG------Q----------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~------~----------------------------~~~~~~fD~v~~d   59 (143)
                      .....++++|||||||+|..++.+++......      .                            +...++||+|+++
T Consensus        33 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~  112 (328)
T 1g6q_1           33 NKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             HHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             hHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEe
Confidence            34456789999999999999999987621100      0                            1123689999987


Q ss_pred             CC------ccchHHHHHHHHhcccCCeEEEEe
Q 032292           60 AD------KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~------~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .-      .......+..+.++|+|||+++.+
T Consensus       113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          113 WMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             CchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            31      123456778888999999999844

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.64  E-value=5.1e-08  Score=75.82  Aligned_cols=70  Identities=16%  Similarity=0.073  Sum_probs=50.1

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCC-----------------------c-----------cCCCCceeEEEEcC-
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDG-----------------------Q-----------SENEGSFDYAFVDA-   60 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~-----------------------~-----------~~~~~~fD~v~~d~-   60 (143)
                      ...++++|||||||+|..+..+++......                       .           +...++||+|+++. 
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  140 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  140 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence            346788999999999999999988621100                       0           12237899999865 


Q ss_pred             --C---ccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 --D---KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 --~---~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                        .   .......+..+.++|+|||+++.+
T Consensus       141 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip~  170 (340)
T 2fyt_A          141 GYFLLFESMLDSVLYAKNKYLAKGGSVYPD  170 (340)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             hhhccCHHHHHHHHHHHHhhcCCCcEEEcc
Confidence              1   123456788888999999999843

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.64  E-value=2.9e-08  Score=75.10  Aligned_cols=69  Identities=16%  Similarity=0.065  Sum_probs=52.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .+.++|||+|||+|..++.+|+.......                                  ....++||+|+++... 
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~-  202 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV-  202 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch-
Confidence            35789999999999999999987653100                                  1125689999998643 


Q ss_pred             chHHHHHHHHhcccCCeEEEEecc
Q 032292           64 NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ....+++.+.++|+|||++++...
T Consensus       203 ~~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          203 RTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             hHHHHHHHHHHHCCCCeEEEEEEe
Confidence            345678889999999999988644

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.63  E-value=3.9e-08  Score=72.77  Aligned_cols=76  Identities=8%  Similarity=-0.010  Sum_probs=54.4

Q ss_pred             HHHHHhhc-CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCC-c
Q 032292           11 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEG-S   52 (143)
Q Consensus        11 l~~l~~~~-~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~-~   52 (143)
                      |..++... +..+|+|||||+|+.++.+|+..+. ++                                    ....+ +
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~   84 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQ   84 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcC
Confidence            45555554 4569999999999999999987543 11                                    11223 6


Q ss_pred             eeEEEEcCCcc-chHHHHHHHHhcccCCeEEEEecc
Q 032292           53 FDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        53 fD~v~~d~~~~-~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ||.|++.+-.. -....++.+.+.|+++|++|+...
T Consensus        85 ~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           85 VSVITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             CCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             CCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            99999754322 346778888899999999988644

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.62  E-value=3e-08  Score=78.57  Aligned_cols=69  Identities=19%  Similarity=0.162  Sum_probs=52.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCceeEEEEcCCc---c
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFDYAFVDADK---D   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD~v~~d~~~---~   63 (143)
                      .+..+|||||||+|..+..+++.... .+.                              +..+++||+|++....   .
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~  185 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLCHIP  185 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHHhcC
Confidence            35679999999999999999876321 000                              1124789999987642   4


Q ss_pred             chHHHHHHHHhcccCCeEEEEec
Q 032292           64 NYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ++...++++.++|+|||++++..
T Consensus       186 d~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          186 YVQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             THHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCeEEEEEe
Confidence            66788999999999999999864

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.62  E-value=2.3e-07  Score=69.07  Aligned_cols=74  Identities=12%  Similarity=0.056  Sum_probs=50.6

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCC----------CC------c----------------------c---C-----C
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPE----------DG------Q----------------------S---E-----N   49 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~----------~~------~----------------------~---~-----~   49 (143)
                      ...++.+|||||||+|..+..+++..++          ..      .                      .   .     .
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  119 (275)
T 3bkx_A           40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIA  119 (275)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCC
Confidence            3456789999999999999999987521          00      0                      1   0     2


Q ss_pred             CCceeEEEEcCCc---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           50 EGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        50 ~~~fD~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .++||+|++....   .+....++.+..+++|||++++.+...
T Consensus       120 ~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          120 DQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             TCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             CCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            3679999987542   233445555566777799999876544

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.62  E-value=3.4e-08  Score=74.74  Aligned_cols=36  Identities=8%  Similarity=-0.020  Sum_probs=29.8

Q ss_pred             CCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +++||+|++...   ..+....++++.++|||||.+++-
T Consensus       133 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence            578999998753   346678999999999999999874

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.62  E-value=4.4e-08  Score=77.16  Aligned_cols=72  Identities=11%  Similarity=0.063  Sum_probs=52.0

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCC------c---------------------------cCCCCceeEEEEcCC-
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDG------Q---------------------------SENEGSFDYAFVDAD-   61 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~------~---------------------------~~~~~~fD~v~~d~~-   61 (143)
                      ...+.++|||||||+|..++.++++.....      .                           ....++||+|+++.- 
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            345678999999999999999998732100      0                           112378999998641 


Q ss_pred             -c----cchHHHHHHHHhcccCCeEEEEecc
Q 032292           62 -K----DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        62 -~----~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                       .    ......++.+.++|+|||+++++..
T Consensus       140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             hcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence             1    2345678888899999999987644

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.61  E-value=1.1e-07  Score=73.58  Aligned_cols=70  Identities=16%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cC--CCCceeEEEEcCCc
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SE--NEGSFDYAFVDADK   62 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~--~~~~fD~v~~d~~~   62 (143)
                      +.+|||||||+|..+..+++..+. .+                                   ..  ..++||+|++....
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTT-CEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            789999999999999999998764 11                                   11  45569999986543


Q ss_pred             c-----chHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           63 D-----NYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        63 ~-----~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      .     +....++.+.+.|+|||.+++.+..+.
T Consensus       259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  291 (352)
T 3mcz_A          259 HYFDAREAREVIGHAAGLVKPGGALLILTMTMN  291 (352)
T ss_dssp             GGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            2     235688999999999999987765543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.60  E-value=6.1e-07  Score=64.96  Aligned_cols=112  Identities=9%  Similarity=0.011  Sum_probs=67.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .++.+|||+|||+|..++.++...|.. +                                  ....++||+|++.--.+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LH  126 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLP  126 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHH
Confidence            568999999999999999998776542 2                                  12467899999764322


Q ss_pred             ch---HHHHHHHHhcccCCeEEEEeccC-CCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEEeecCCeeEEE
Q 032292           64 NY---CNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC  139 (143)
Q Consensus        64 ~~---~~~~~~~~~~L~~gG~li~d~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~lp~~~Gl~~~  139 (143)
                      ..   ...+..+.+.|+|||++|.-++- ..|.-    ....+++       -+.|...+.+.+ ...--+-+++=+...
T Consensus       127 lL~~~~~al~~v~~~L~pggvfISfptksl~Gr~----~gm~~~Y-------~~~~~~~~~~~~-~~~~~~~~~nEl~y~  194 (200)
T 3fzg_A          127 VLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKE----KGMEENY-------QLWFESFTKGWI-KILDSKVIGNELVYI  194 (200)
T ss_dssp             HHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--C----TTCCCCH-------HHHHHHHTTTTS-CEEEEEEETTEEEEE
T ss_pred             hhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCC----cchhhhH-------HHHHHHhccCcc-eeeeeeeeCceEEEE
Confidence            11   12344788999999999865521 12221    1111111       244555564333 334445667766666


Q ss_pred             EEc
Q 032292          140 RRI  142 (143)
Q Consensus       140 ~k~  142 (143)
                      ++|
T Consensus       195 ~~~  197 (200)
T 3fzg_A          195 TSG  197 (200)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.59  E-value=1.6e-07  Score=72.95  Aligned_cols=73  Identities=12%  Similarity=0.018  Sum_probs=53.2

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC-Cc---------------------------cC--CCCceeEEEEcCCccc---
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED-GQ---------------------------SE--NEGSFDYAFVDADKDN---   64 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~-~~---------------------------~~--~~~~fD~v~~d~~~~~---   64 (143)
                      .+..+|||||||+|..+..+++..+.. +.                           ..  ...+||+|++.....+   
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d  262 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGD  262 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCH
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCH
Confidence            457899999999999999999987531 00                           11  1127999998754322   


Q ss_pred             --hHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           65 --YCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        65 --~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                        ....++++.+.|+|||.+++.+....
T Consensus       263 ~~~~~~L~~~~~~LkpgG~l~i~e~~~~  290 (348)
T 3lst_A          263 EDSVRILTNCRRVMPAHGRVLVIDAVVP  290 (348)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence              24689999999999999988765543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.58  E-value=8.3e-08  Score=74.77  Aligned_cols=69  Identities=13%  Similarity=0.085  Sum_probs=50.3

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCC--------------------C---c----------cCCCCceeEEEEcCC--
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPED--------------------G---Q----------SENEGSFDYAFVDAD--   61 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~--------------------~---~----------~~~~~~fD~v~~d~~--   61 (143)
                      ..++++|||||||+|..+..+++.-...                    +   +          ....++||+|++..-  
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            3477899999999999999998762110                    0   0          112368999998742  


Q ss_pred             ---ccchHHHHHHHHhcccCCeEEEEe
Q 032292           62 ---KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ---~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                         ...+...+..+.++|+|||++++.
T Consensus       128 ~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          128 MLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             cCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence               234567788888999999999854

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.58  E-value=1.8e-07  Score=73.30  Aligned_cols=72  Identities=13%  Similarity=0.085  Sum_probs=53.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------c---CCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------S---ENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~---~~~~~fD~v~~d~~~~   63 (143)
                      .+..+|||||||+|..+..+++..+. .+                               .   ....+||+|++.....
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh  279 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPG-LRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLH  279 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGG
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCC-CeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhc
Confidence            45789999999999999999998763 11                               1   1123799999875432


Q ss_pred             c-----hHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           64 N-----YCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        64 ~-----~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      +     ....++++.+.|+|||.+++.+....
T Consensus       280 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  311 (369)
T 3gwz_A          280 DWDDDDVVRILRRIATAMKPDSRLLVIDNLID  311 (369)
T ss_dssp             GSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            2     23578999999999999988765543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.58  E-value=9.6e-08  Score=72.34  Aligned_cols=70  Identities=10%  Similarity=0.021  Sum_probs=50.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC-CCc----------------------------------cCCCCceeEEEEcCC--
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQ----------------------------------SENEGSFDYAFVDAD--   61 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~-~~~----------------------------------~~~~~~fD~v~~d~~--   61 (143)
                      ++.+|||||||+|..+..+++.... .+.                                  ....++||+|++...  
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  161 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSI  161 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCccc
Confidence            4569999999999999999886211 000                                  112578999986421  


Q ss_pred             -c---cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           62 -K---DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 -~---~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                       .   .+....++++.++|+|||++++....
T Consensus       162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          162 NELDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             TTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence             1   13467889999999999999987544

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.57  E-value=2.4e-07  Score=72.09  Aligned_cols=81  Identities=15%  Similarity=0.122  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------c
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------S   47 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~   47 (143)
                      .+..+..+..++...+..+|||+|||+|..++.+|....+...                                    +
T Consensus       188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~  267 (354)
T 3tma_A          188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP  267 (354)
T ss_dssp             CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc
Confidence            4455566666666677889999999999999999987621111                                    1


Q ss_pred             CCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEE
Q 032292           48 ENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~-----------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ...++||+|++|..-           ..|...++.+.++|+|||.+++
T Consensus       268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i  315 (354)
T 3tma_A          268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL  315 (354)
T ss_dssp             GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred             cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            224568999997421           1246678888999999999987

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.56  E-value=1.2e-07  Score=75.27  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=51.0

Q ss_pred             hhcC-CCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcC
Q 032292           16 RLVN-AKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        16 ~~~~-~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~   60 (143)
                      ...+ +++|||+|||+|..++.+|+.... ..                                  +...+.||+|++|.
T Consensus       210 ~~~~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dp  288 (393)
T 4dmg_A          210 AMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDP  288 (393)
T ss_dssp             TTCCTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECC
T ss_pred             HHhcCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECC
Confidence            3334 789999999999999999986321 11                                  12244599999986


Q ss_pred             Cc------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DK------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..            ..|...++.+.++|+|||++++.
T Consensus       289 P~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~  325 (393)
T 4dmg_A          289 PTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLS  325 (393)
T ss_dssp             CCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            42            24567788889999999999853

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.56  E-value=1.1e-07  Score=69.73  Aligned_cols=69  Identities=10%  Similarity=-0.076  Sum_probs=50.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------cCCC----------CceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------SENE----------GSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------~~~~----------~~fD~v~~d~~   61 (143)
                      .+..+|||+|||+|..+..+++..+. ..                          ....          .+||+|++...
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~  133 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPR-VIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG  133 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSC-EEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCC-EEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence            45689999999999999999988652 11                          0000          13899998753


Q ss_pred             c---c--chHHHHHHHHhcccCCeEEEEecc
Q 032292           62 K---D--NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        62 ~---~--~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .   .  +...+++.+.++|+|||++++-+.
T Consensus       134 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          134 FHHIPVEKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             STTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            2   2  456789999999999998766443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.55  E-value=1.2e-07  Score=72.97  Aligned_cols=71  Identities=13%  Similarity=0.038  Sum_probs=53.5

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------c---CCCCceeEEEEcCCccc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------S---ENEGSFDYAFVDADKDN   64 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------~---~~~~~fD~v~~d~~~~~   64 (143)
                      +..+|||||||+|..+..+++..+. .+                               .   ....+||+|++.....+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~  247 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHED-LSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHD  247 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCC-CeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhcc
Confidence            4689999999999999999998764 11                               1   11227999998654322


Q ss_pred             -----hHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           65 -----YCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        65 -----~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                           ....++++.+.|+|||.+++.+....
T Consensus       248 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  278 (332)
T 3i53_A          248 WDDLSAVAILRRCAEAAGSGGVVLVIEAVAG  278 (332)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEeecCC
Confidence                 35678999999999999988766554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.55  E-value=3.1e-07  Score=70.53  Aligned_cols=68  Identities=10%  Similarity=0.005  Sum_probs=51.7

Q ss_pred             CEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCccc--
Q 032292           21 KKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKDN--   64 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~~--   64 (143)
                      .+|||+|||+|..+..+++..+. .+                                  ....++||+|++.....+  
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~  247 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPS-ARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLD  247 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTT-CEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCC
Confidence            89999999999999999988753 11                                  112356999998764332  


Q ss_pred             ---hHHHHHHHHhcccCCeEEEEeccCC
Q 032292           65 ---YCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        65 ---~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                         ....++.+.+.|+|||.+++.+...
T Consensus       248 ~~~~~~~l~~~~~~L~pgG~l~i~e~~~  275 (334)
T 2ip2_A          248 EAASLRLLGNCREAMAGDGRVVVIERTI  275 (334)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence               2367889999999999998876554

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.53  E-value=1.4e-07  Score=75.59  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=54.7

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCC-Cc--------------------------------------cCC-----
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPED-GQ--------------------------------------SEN-----   49 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~-~~--------------------------------------~~~-----   49 (143)
                      .+...+..+|||||||+|..++.+|...+.. ..                                      ...     
T Consensus       168 ~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~  247 (438)
T 3uwp_A          168 EIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR  247 (438)
T ss_dssp             HHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHH
T ss_pred             hcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccc
Confidence            3345677899999999999999999765532 00                                      000     


Q ss_pred             C--CceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           50 E--GSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        50 ~--~~fD~v~~d~~--~~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      .  ..||+||++..  ..+....+.++.+.|||||.||+.+.+..
T Consensus       248 d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          248 ERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             cccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            0  36889988643  23455678888999999999998766543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.53  E-value=6.1e-07  Score=68.70  Aligned_cols=71  Identities=13%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      .++.+|||+|||+|..+..+++..+. .+                                   ....+.||+|++....
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPN-AEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            56789999999999999999988753 11                                   1123459999986532


Q ss_pred             c-----chHHHHHHHHhcccCCeEEEEeccCC
Q 032292           63 D-----NYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        63 ~-----~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .     +....++.+.+.|+|||.+++.+...
T Consensus       243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            2     23578899999999999877655543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.53  E-value=6.4e-07  Score=69.57  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             HHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCC----CC---------------------c-----------cC---CC
Q 032292           11 MAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPE----DG---------------------Q-----------SE---NE   50 (143)
Q Consensus        11 l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~----~~---------------------~-----------~~---~~   50 (143)
                      +..++. ..++.+|||+|||+|..++.+++....    +.                     .           +.   ..
T Consensus       144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~  223 (332)
T 2igt_A          144 LKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRG  223 (332)
T ss_dssp             HHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcC
Confidence            444443 335679999999999999999875321    00                     0           00   03


Q ss_pred             CceeEEEEcCCc-------------cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           51 GSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        51 ~~fD~v~~d~~~-------------~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ++||+|++|...             ..+...++.+.++|+|||++++....
T Consensus       224 ~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          224 STYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             CCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             CCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            589999997531             13567788889999999998775443

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.51  E-value=4e-07  Score=71.32  Aligned_cols=71  Identities=13%  Similarity=0.087  Sum_probs=52.1

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------cCCCCceeEEEEcCCccc-----h
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------SENEGSFDYAFVDADKDN-----Y   65 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------~~~~~~fD~v~~d~~~~~-----~   65 (143)
                      .+..+|||||||+|..+..+++..|. .+                           ...... |+|++.....+     .
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~-D~v~~~~vlh~~~d~~~  277 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPT-IKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSG-DTILMKWILHDWSDQHC  277 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCC-SEEEEESCGGGSCHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCC-CeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCC-CEEEehHHhccCCHHHH
Confidence            45689999999999999999998864 11                           111122 99998654332     2


Q ss_pred             HHHHHHHHhcccCCeEEEEeccCCC
Q 032292           66 CNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      ...++++.+.|+|||.+++.+....
T Consensus       278 ~~~L~~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          278 ATLLKNCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             HHHHHHHHHHcCCCCEEEEEEeccC
Confidence            4678999999999999987766543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.50  E-value=3.1e-07  Score=70.61  Aligned_cols=67  Identities=12%  Similarity=0.019  Sum_probs=47.7

Q ss_pred             CCCEEEEEeccccHHHHHHHhh--C----------CC--C---Cc----------------cCCCCceeEEEEcCCcc--
Q 032292           19 NAKKTIEIGVFTGYSLLLTALT--I----------PE--D---GQ----------------SENEGSFDYAFVDADKD--   63 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~--~----------~~--~---~~----------------~~~~~~fD~v~~d~~~~--   63 (143)
                      +..+|||+|||+|.+|..+++.  +          +.  +   ..                ....++||+|++|....  
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~~~~g  161 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESSP  161 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCCS
T ss_pred             CCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECCccccC
Confidence            4579999999999999999886  1          10  0   00                11246899999986531  


Q ss_pred             ch----H---HHHHHHHhcccCCeEEEEe
Q 032292           64 NY----C---NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ~~----~---~~~~~~~~~L~~gG~li~d   85 (143)
                      .+    .   ..++.+.++|+|||.++++
T Consensus       162 ~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          162 NPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            11    1   3677778999999999985

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.50  E-value=2.8e-07  Score=68.32  Aligned_cols=76  Identities=9%  Similarity=0.017  Sum_probs=53.7

Q ss_pred             HHHHHhhc-CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCC-Cc
Q 032292           11 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENE-GS   52 (143)
Q Consensus        11 l~~l~~~~-~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~-~~   52 (143)
                      |..++... +..+|+|||||+|+.++.+++..+. .+                                    .... ++
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~   90 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADN   90 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGC
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccc
Confidence            44455544 4579999999999999999987542 11                                    1112 26


Q ss_pred             eeEEEEcCCc-cchHHHHHHHHhcccCCeEEEEecc
Q 032292           53 FDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        53 fD~v~~d~~~-~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ||+|++.+-. .-..+.++...+.|+++|.+|+...
T Consensus        91 ~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           91 IDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             CCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence            9999875432 2355678888899999999988653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.50  E-value=2.8e-07  Score=70.02  Aligned_cols=79  Identities=14%  Similarity=0.209  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHhh---cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------
Q 032292            5 TIHGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------   46 (143)
Q Consensus         5 ~~~~~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------   46 (143)
                      |++..++..+...   .++.+|||+|||+|..++.+++. +. .+                                   
T Consensus       106 ~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~-~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~  183 (284)
T 1nv8_A          106 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SD-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL  183 (284)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SS-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             hhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch
Confidence            3444444444432   35689999999999999999988 43 22                                   


Q ss_pred             cCCCCce---eEEEEcCCc-------------c---------chHHHHHHHH-hcccCCeEEEEe
Q 032292           47 SENEGSF---DYAFVDADK-------------D---------NYCNYHERLM-KLLKVGGIAVYD   85 (143)
Q Consensus        47 ~~~~~~f---D~v~~d~~~-------------~---------~~~~~~~~~~-~~L~~gG~li~d   85 (143)
                      ....++|   |+|+++..-             .         +-...++.+. +.|+|||++++.
T Consensus       184 ~~~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          184 EPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             GGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             hhcccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            1112578   999997210             0         1126788999 999999999874

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.49  E-value=9.7e-08  Score=71.99  Aligned_cols=37  Identities=14%  Similarity=0.083  Sum_probs=29.1

Q ss_pred             CceeEEEEcCCc-------cchHHHHHHHHhcccCCeEEEEecc
Q 032292           51 GSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        51 ~~fD~v~~d~~~-------~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ++||+|++....       .++...++++.++|||||++++...
T Consensus       173 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          173 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             SSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            459999987642       2456789999999999999998643

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.48  E-value=1.3e-07  Score=71.21  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             ceeEEEEcCCcc--c----hHHHHHHHHhcccCCeEEEE
Q 032292           52 SFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        52 ~fD~v~~d~~~~--~----~~~~~~~~~~~L~~gG~li~   84 (143)
                      +||+||+|+...  +    +.+.++.+.++|+|||+++.
T Consensus       173 ~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          173 KVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             CEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence            799999998432  2    56789999999999999985

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.47  E-value=5.9e-08  Score=71.62  Aligned_cols=38  Identities=29%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             CceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEeccC
Q 032292           51 GSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        51 ~~fD~v~~d~~~~-------~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ++||+|++.....       ++...++.+.++|+|||++++.+..
T Consensus       156 ~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          156 PPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             CCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             CCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            6899999875432       4567889999999999999987643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.47  E-value=4.2e-07  Score=70.50  Aligned_cols=70  Identities=16%  Similarity=0.068  Sum_probs=51.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .+..+|||||||+|..+..+++..+. .+                                  ......||+|++.....
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~  260 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL  260 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCC-CEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEccccc
Confidence            45789999999999999999988753 11                                  11223599999865432


Q ss_pred             c-----hHHHHHHHHhcccCCeEEEEeccC
Q 032292           64 N-----YCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        64 ~-----~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      +     ....++++.+.|+|||.+++.+..
T Consensus       261 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          261 NWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             GSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            2     246789999999999988876554

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.47  E-value=2.2e-07  Score=73.46  Aligned_cols=69  Identities=17%  Similarity=0.147  Sum_probs=48.2

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcC---
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDA---   60 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~---   60 (143)
                      ..+.++|||||||+|..++..|++-.....                                 ...+++||+|++..   
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~  160 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY  160 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence            347899999999999999988876321000                                 12357899999742   


Q ss_pred             ---CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 ---DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ---~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                         .......++....++|+|||+++-+
T Consensus       161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          161 GLLHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             TBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccccchhhhHHHHHHhhCCCCceECCc
Confidence               1123455666667999999999855

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.46  E-value=3e-07  Score=72.06  Aligned_cols=70  Identities=11%  Similarity=0.069  Sum_probs=51.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------cCCCCceeEEEEcCCccc-----hH
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------SENEGSFDYAFVDADKDN-----YC   66 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------~~~~~~fD~v~~d~~~~~-----~~   66 (143)
                      +..+|||||||+|..+..+++..|. .+                           ...... |+|++....++     ..
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~-D~v~~~~vlh~~~~~~~~  280 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPS-INAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKG-DAIFIKWICHDWSDEHCL  280 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCC-SEEEEESCGGGBCHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCC-CEEEEechhhcCCHHHHH
Confidence            4689999999999999999998864 11                           111122 99988654332     23


Q ss_pred             HHHHHHHhcccCCeEEEEeccCCC
Q 032292           67 NYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        67 ~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      ..++++.+.|+|||.+++.+....
T Consensus       281 ~~l~~~~~~L~pgG~l~i~e~~~~  304 (368)
T 3reo_A          281 KLLKNCYAALPDHGKVIVAEYILP  304 (368)
T ss_dssp             HHHHHHHHHSCTTCEEEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEEEEeccC
Confidence            578999999999999887766543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.46  E-value=3e-07  Score=70.45  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             CCceeEEEEcCCc------cchHHHHHHHHhcccCCeEEEEecc
Q 032292           50 EGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        50 ~~~fD~v~~d~~~------~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .++||+|++....      .+....++.+.++|+|||++++...
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3689999875321      2446789999999999999998644

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.45  E-value=2.7e-07  Score=72.17  Aligned_cols=71  Identities=14%  Similarity=0.090  Sum_probs=52.2

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------c--CCCCceeEEEEcCCcc---ch--H
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------S--ENEGSFDYAFVDADKD---NY--C   66 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------~--~~~~~fD~v~~d~~~~---~~--~   66 (143)
                      .++.+|||||||+|..+..+++..+. .+                        .  .....||+|++.....   +.  .
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~  286 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI  286 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHH
Confidence            35689999999999999999998763 11                        0  1112399999875432   22  2


Q ss_pred             HHHHHHHhcccCCeEEEEeccCC
Q 032292           67 NYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        67 ~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ..++++.+.|+|||.+++.+...
T Consensus       287 ~~l~~~~~~L~pgG~l~i~e~~~  309 (372)
T 1fp1_D          287 EFLSNCHKALSPNGKVIIVEFIL  309 (372)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEEEecc
Confidence            68899999999999998765543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.45  E-value=4e-07  Score=67.24  Aligned_cols=67  Identities=19%  Similarity=0.205  Sum_probs=48.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC------------------------------Cc--------------c--CCCCc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED------------------------------GQ--------------S--ENEGS   52 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~------------------------------~~--------------~--~~~~~   52 (143)
                      +..+|||||||+|..++.+|+..+..                              +.              +  ...++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            56799999999999999999876530                              10              1  22457


Q ss_pred             eeEEEEcCCccc-----------hHHHHHHHHhcccCCeEEEEe
Q 032292           53 FDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        53 fD~v~~d~~~~~-----------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +|.|++......           +...++.+.++|+|||++++.
T Consensus       129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            888876532111           147889999999999999873

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.44  E-value=3.1e-07  Score=77.89  Aligned_cols=76  Identities=22%  Similarity=0.376  Sum_probs=55.1

Q ss_pred             HHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeE
Q 032292           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDY   55 (143)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~   55 (143)
                      .+....+.++|||+|||+|..++.+|+.-.....                                     +...++||+
T Consensus       533 ~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~  612 (703)
T 3v97_A          533 MLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDL  612 (703)
T ss_dssp             HHHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             HHHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccE
Confidence            3444557899999999999999998874321000                                     123468999


Q ss_pred             EEEcCCc--------------cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           56 AFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        56 v~~d~~~--------------~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      |++|...              ..|...++.+.++|+|||+|++....
T Consensus       613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9998631              24566788889999999999987544

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.44  E-value=3.9e-07  Score=70.94  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .++.+|||||||+|..+..+++..+. .+                                  ......||+|++.....
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~  259 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL  259 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCC-CEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEecccc
Confidence            45789999999999999999988753 11                                  11223499999875432


Q ss_pred             c-----hHHHHHHHHhcccCCeEEEEecc
Q 032292           64 N-----YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ~-----~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +     ....++++.+.|+|||.+++.+.
T Consensus       260 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          260 NWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            2     23678999999999998877554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.41  E-value=1.8e-08  Score=73.89  Aligned_cols=77  Identities=9%  Similarity=0.015  Sum_probs=51.6

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------------cCCCCceeE
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------------SENEGSFDY   55 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------------~~~~~~fD~   55 (143)
                      .++..+....++.+|||+|||+|..++.+++.... .+.                                ....++||+
T Consensus        68 ~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  147 (241)
T 3gdh_A           68 HIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADV  147 (241)
T ss_dssp             HHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSE
T ss_pred             HHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCE
Confidence            33444444457899999999999999999986321 000                                113568999


Q ss_pred             EEEcCCccc---hHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKDN---YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~~---~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |+++.....   ....+..+.++|+|||+++++
T Consensus       148 v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          148 VFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             EEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             EEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence            999864321   122444567899999998765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.41  E-value=1.6e-06  Score=67.30  Aligned_cols=72  Identities=17%  Similarity=0.084  Sum_probs=52.1

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      ..++.+|||||||+|..+..+++..+. .+                                  ......+|+|++....
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl  266 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL  266 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCTT-CEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCG
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCCC-CeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechh
Confidence            356789999999999999999998763 11                                  1112345999986543


Q ss_pred             cc-----hHHHHHHHHhcccCCeEEEEeccCC
Q 032292           63 DN-----YCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        63 ~~-----~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .+     ....++++.+.|+|||.+++.+...
T Consensus       267 h~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  298 (359)
T 1x19_A          267 YSANEQLSTIMCKKAFDAMRSGGRLLILDMVI  298 (359)
T ss_dssp             GGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            22     4567899999999999997655443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.40  E-value=5.7e-07  Score=68.52  Aligned_cols=68  Identities=13%  Similarity=-0.004  Sum_probs=48.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCC----------------------------C--c-----------c----C--CCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPED----------------------------G--Q-----------S----E--NEG   51 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~----------------------------~--~-----------~----~--~~~   51 (143)
                      ++.+|||+|||+|..+..+++.....                            .  .           +    .  ..+
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            67899999999999999888642100                            0  0           1    1  134


Q ss_pred             ceeEEEEcCCc-------cchHHHHHHHHhcccCCeEEEEec
Q 032292           52 SFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        52 ~fD~v~~d~~~-------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +||+|++....       .+....++.+.++|+|||++++..
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT  155 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            89999987543       123478899999999999999864

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.40  E-value=4.2e-07  Score=71.81  Aligned_cols=73  Identities=22%  Similarity=0.304  Sum_probs=52.5

Q ss_pred             HHhhc-CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cC---CCCce
Q 032292           14 LLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SE---NEGSF   53 (143)
Q Consensus        14 l~~~~-~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~---~~~~f   53 (143)
                      ++... +.++|||+|||+|..++.+|+.-.....                                    +.   ..++|
T Consensus       211 ~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~f  290 (396)
T 2as0_A          211 LEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF  290 (396)
T ss_dssp             HGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCC
Confidence            33444 6789999999999999999986111000                                    00   14689


Q ss_pred             eEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEec
Q 032292           54 DYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        54 D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      |+|++|...            ..+...+..+.++|+|||++++..
T Consensus       291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  335 (396)
T 2as0_A          291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  335 (396)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999998642            345667888999999999887753

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.40  E-value=1.7e-07  Score=73.85  Aligned_cols=73  Identities=25%  Similarity=0.357  Sum_probs=52.9

Q ss_pred             HHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------c---CCCCceeE
Q 032292           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------S---ENEGSFDY   55 (143)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------~---~~~~~fD~   55 (143)
                      .++.. +.++|||+|||+|..++.+|+.... .+.                                 +   ...++||+
T Consensus       204 ~~~~~-~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          204 YMERF-RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             HGGGC-CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             HHHhc-CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeE
Confidence            34444 6789999999999999999987210 000                                 0   01468999


Q ss_pred             EEEcCCc------------cchHHHHHHHHhcccCCeEEEEec
Q 032292           56 AFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        56 v~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      |++|...            ..+...+..+.++|+|||++++..
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  325 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS  325 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9998632            345667888999999999998753

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.39  E-value=9.5e-08  Score=71.37  Aligned_cols=39  Identities=31%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             CCceeEEEEcCCc-------cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           50 EGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        50 ~~~fD~v~~d~~~-------~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      .++||+|++....       .++...++++.++|||||++++....
T Consensus       154 ~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          154 LPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             CCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             cCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            4689999986421       34567888999999999999987643

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.37  E-value=1.2e-06  Score=68.35  Aligned_cols=71  Identities=14%  Similarity=0.063  Sum_probs=52.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCccc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKDN   64 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~~   64 (143)
                      .+..+|||||||+|..++.++++.|. .+                                 ......+|++++.....+
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~  256 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPG-CKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHD  256 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSS-CEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGG
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeeccc
Confidence            45689999999999999999999885 22                                 122345899988654333


Q ss_pred             h-----HHHHHHHHhcccCCeEEEEeccCC
Q 032292           65 Y-----CNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        65 ~-----~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      +     ...++++.+.|+|||.+++-+.+.
T Consensus       257 ~~d~~~~~iL~~~~~al~pgg~lli~e~~~  286 (353)
T 4a6d_A          257 WADGKCSHLLERIYHTCKPGGGILVIESLL  286 (353)
T ss_dssp             SCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence            2     356889999999999877665543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.36  E-value=1.2e-06  Score=69.10  Aligned_cols=80  Identities=20%  Similarity=0.218  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------cCCCCceeEEEE
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------SENEGSFDYAFV   58 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------~~~~~~fD~v~~   58 (143)
                      +...+++..++...++.+|||+|||+|..++.+++.......                          ....++||+|++
T Consensus        25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~  104 (421)
T 2ih2_A           25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILG  104 (421)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEE
Confidence            444556666555445679999999999999999976421111                          122468999999


Q ss_pred             cCC-----c---------c------------------chHHHHHHHHhcccCCeEEEE
Q 032292           59 DAD-----K---------D------------------NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        59 d~~-----~---------~------------------~~~~~~~~~~~~L~~gG~li~   84 (143)
                      +-.     .         .                  .+...++.+.++|+|||.+++
T Consensus       105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A          105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence            521     0         0                  122557888899999998876

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.36  E-value=9.2e-07  Score=66.67  Aligned_cols=68  Identities=15%  Similarity=0.023  Sum_probs=47.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC--------C---------C-------------c----cCCCCceeEEEEcCCc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE--------D---------G-------------Q----SENEGSFDYAFVDADK-   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~--------~---------~-------------~----~~~~~~fD~v~~d~~~-   62 (143)
                      .+..+|||+|||+|.++..+++. ..        .         .             .    ...+++||+|++|... 
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~~~  151 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVGES  151 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeCccc
Confidence            35679999999999999999875 10        0         0             0    1124679999998641 


Q ss_pred             -cch-------HHHHHHHHhcccCCe--EEEEec
Q 032292           63 -DNY-------CNYHERLMKLLKVGG--IAVYDN   86 (143)
Q Consensus        63 -~~~-------~~~~~~~~~~L~~gG--~li~d~   86 (143)
                       .++       ...++.+.++|+|||  .+++..
T Consensus       152 ~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          152 SPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence             111       136788889999999  998853

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.34  E-value=5.4e-07  Score=66.15  Aligned_cols=67  Identities=12%  Similarity=-0.030  Sum_probs=44.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC--------C---C-------c-------------------cCC---CCceeEEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE--------D---G-------Q-------------------SEN---EGSFDYAF   57 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~--------~---~-------~-------------------~~~---~~~fD~v~   57 (143)
                      .++.+|||||||+|..+..+|+..+.        +   -       +                   ...   .+.+|.|+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            36689999999999999999965332        1   0       0                   000   13455555


Q ss_pred             EcCCc--------cchHHHHHHHHhcccCCeEEEE
Q 032292           58 VDADK--------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        58 ~d~~~--------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      +.-..        ..+...++++.++|||||.+++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            43211        1234578899999999999988

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.33  E-value=3.4e-07  Score=68.47  Aligned_cols=77  Identities=8%  Similarity=0.009  Sum_probs=53.5

Q ss_pred             HHHHHhhc-CCCEEEEEeccccHHHHHHHhhCCCC-Cc----------------------------------cCCCC-ce
Q 032292           11 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPED-GQ----------------------------------SENEG-SF   53 (143)
Q Consensus        11 l~~l~~~~-~~~~vLeiG~g~G~~t~~la~~~~~~-~~----------------------------------~~~~~-~f   53 (143)
                      |..++... +..+|||||||+|+.++.+|+..+.. ..                                  ....+ +|
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~   91 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAI   91 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccc
Confidence            44455544 45799999999999999999875421 00                                  11223 59


Q ss_pred             eEEEEcCC-ccchHHHHHHHHhcccCCeEEEEecc
Q 032292           54 DYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        54 D~v~~d~~-~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      |+|++.+- ..-....++...+.|++++.+|+...
T Consensus        92 D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           92 DTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             CEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            99987542 23356678888899999999988653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.32  E-value=9.8e-07  Score=66.91  Aligned_cols=66  Identities=11%  Similarity=0.001  Sum_probs=47.2

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCC--------C---------C------c-----------cCCCCceeEEEEcCCc--
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPE--------D---------G------Q-----------SENEGSFDYAFVDADK--   62 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~--------~---------~------~-----------~~~~~~fD~v~~d~~~--   62 (143)
                      +..+|||+|||+|.++..+++. ..        .         .      .           ...+++||+|++|...  
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~~~~~  160 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIGESN  160 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECCCCCC
T ss_pred             CCCEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECCCcCC
Confidence            5679999999999999999875 10        0         0      0           1124689999998641  


Q ss_pred             cch-------HHHHHHHHhcccCCe--EEEEe
Q 032292           63 DNY-------CNYHERLMKLLKVGG--IAVYD   85 (143)
Q Consensus        63 ~~~-------~~~~~~~~~~L~~gG--~li~d   85 (143)
                      .++       ...++.+.++|+|||  .++++
T Consensus       161 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          161 PTAAVEASRTLTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence            111       136788889999999  88885

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.32  E-value=8.2e-07  Score=72.22  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=47.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEEEcCC-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAFVDAD-   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~~d~~-   61 (143)
                      .++++|||||||+|..++.+++. +. .+                                  . ...++||+|+++.- 
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~~-~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~  234 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-GA-RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMG  234 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-TC-SEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCH
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-CC-CEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCch
Confidence            46789999999999999998874 21 11                                  1 12468999998653 


Q ss_pred             ----ccchHHHHHHHHhcccCCeEEEE
Q 032292           62 ----KDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        62 ----~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                          ...+...+..+.++|+|||++++
T Consensus       235 ~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          235 YMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence                12345567777899999999984

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.30  E-value=1e-06  Score=69.71  Aligned_cols=73  Identities=21%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCC----------------------C---c------------c---CCCCce
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPED----------------------G---Q------------S---ENEGSF   53 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~----------------------~---~------------~---~~~~~f   53 (143)
                      ++...+.++|||+|||+|..++.+|+.....                      -   .            +   ...++|
T Consensus       215 l~~~~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          215 TRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             HHHHCTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHhhCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence            3344578899999999999999999863110                      0   1            0   013589


Q ss_pred             eEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEec
Q 032292           54 DYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        54 D~v~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      |+|++|...            ..+...+..+.+.|+|||++++..
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  339 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS  339 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999998532            456778888999999999998753

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.29  E-value=4.5e-06  Score=62.92  Aligned_cols=70  Identities=6%  Similarity=-0.061  Sum_probs=50.4

Q ss_pred             CCCEEEEEeccc---cHHHHHHHhhCCCCCc-----------------------------cC----------------CC
Q 032292           19 NAKKTIEIGVFT---GYSLLLTALTIPEDGQ-----------------------------SE----------------NE   50 (143)
Q Consensus        19 ~~~~vLeiG~g~---G~~t~~la~~~~~~~~-----------------------------~~----------------~~   50 (143)
                      ...+|||||||+   |..+..+++..+. ++                             ..                ..
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~-~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPD-ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCC-CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            458999999999   9887776665543 22                             00                01


Q ss_pred             CceeEEEEcCCc---c--chHHHHHHHHhcccCCeEEEEeccCC
Q 032292           51 GSFDYAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        51 ~~fD~v~~d~~~---~--~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ++||+|++....   .  .....++++.+.|+|||+|++.+...
T Consensus       156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            368999987532   1  25678999999999999999876543

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.27  E-value=5.6e-06  Score=58.84  Aligned_cols=78  Identities=12%  Similarity=0.081  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHh---hcCCCEEEEEeccccHHHHHHHhhCCCC-Cc--------------------------cCCCCcee
Q 032292            5 TIHGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPED-GQ--------------------------SENEGSFD   54 (143)
Q Consensus         5 ~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~t~~la~~~~~~-~~--------------------------~~~~~~fD   54 (143)
                      +...+.+..++.   ..++.+|||+|||+|..+..+++. +.. ..                          ....++||
T Consensus        34 ~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D  112 (200)
T 1ne2_A           34 ASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYD  112 (200)
T ss_dssp             HHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCee
Confidence            344444444443   236789999999999999999876 221 00                          11246899


Q ss_pred             EEEEcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292           55 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        55 ~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +|+++...     .....+++.+.+.+  |+++++.
T Consensus       113 ~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          113 TWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             EEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             EEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            99998642     12345778888887  5655554

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.26  E-value=1.9e-06  Score=66.78  Aligned_cols=72  Identities=10%  Similarity=0.063  Sum_probs=52.4

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------c--CCCCceeEEEEcCCcc---ch--
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------S--ENEGSFDYAFVDADKD---NY--   65 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------~--~~~~~fD~v~~d~~~~---~~--   65 (143)
                      ..+..+|||||||+|..+..+++..+. .+                        .  .....||+|++.....   +.  
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~  264 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDC  264 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHH
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCC-CeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHH
Confidence            346689999999999999999988763 11                        1  1112499999865432   22  


Q ss_pred             HHHHHHHHhcccC---CeEEEEeccCC
Q 032292           66 CNYHERLMKLLKV---GGIAVYDNTLW   89 (143)
Q Consensus        66 ~~~~~~~~~~L~~---gG~li~d~~~~   89 (143)
                      ...++++.+.|+|   ||.+++.+...
T Consensus       265 ~~~l~~~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          265 LRILKKCKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             HHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             HHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence            2688999999999   99988766543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.26  E-value=1.4e-06  Score=68.90  Aligned_cols=69  Identities=12%  Similarity=0.202  Sum_probs=48.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCC-------------------------c------------cC---CCCceeEEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDG-------------------------Q------------SE---NEGSFDYAF   57 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~-------------------------~------------~~---~~~~fD~v~   57 (143)
                      .+.++|||+|||+|..++.+|+......                         .            +.   ..++||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            5678999999999999999997421100                         0            00   134899999


Q ss_pred             EcCCc------------cchHHHHHHHHhcccCCeEEEEec
Q 032292           58 VDADK------------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        58 ~d~~~------------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +|...            ..|...+..+.++|+|||++++..
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~  331 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  331 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            97422            124445677789999999998864

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.23  E-value=1.8e-06  Score=63.68  Aligned_cols=32  Identities=16%  Similarity=0.111  Sum_probs=24.2

Q ss_pred             HHHHHHHhh---cCCCEEEEEeccccHHHHHHHhh
Q 032292            9 QLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         9 ~~l~~l~~~---~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +++..+...   .++.+|||+|||+|..++.+++.
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~   72 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLL   72 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHH
Confidence            445544433   24679999999999999999876

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.20  E-value=3.5e-06  Score=65.43  Aligned_cols=72  Identities=11%  Similarity=0.031  Sum_probs=52.7

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------c--CCCCceeEEEEcCCcc---c--h
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------S--ENEGSFDYAFVDADKD---N--Y   65 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------~--~~~~~fD~v~~d~~~~---~--~   65 (143)
                      ..+..+|||||||+|..+..+++..+. .+                        .  ....+||+|++.....   +  .
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~  269 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQS  269 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHH
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHHH
Confidence            346789999999999999999998763 11                        0  1122599999875432   2  2


Q ss_pred             HHHHHHHHhcccC---CeEEEEeccCC
Q 032292           66 CNYHERLMKLLKV---GGIAVYDNTLW   89 (143)
Q Consensus        66 ~~~~~~~~~~L~~---gG~li~d~~~~   89 (143)
                      ...++++.+.|+|   ||.+++.+...
T Consensus       270 ~~~l~~~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          270 LKILKNSKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             HHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred             HHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence            3788999999999   99888755543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.20  E-value=2.8e-06  Score=64.10  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=48.1

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-----CC-c----------c----------------------------C-----
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-----DG-Q----------S----------------------------E-----   48 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-----~~-~----------~----------------------------~-----   48 (143)
                      .+.++|||+|||+|..++.+++....     +. .          .                            .     
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            46789999999999999998875321     01 0          0                            0     


Q ss_pred             --CCCceeEEEE-cCC--ccchHHHHHHHHhccc---C--CeEEEE
Q 032292           49 --NEGSFDYAFV-DAD--KDNYCNYHERLMKLLK---V--GGIAVY   84 (143)
Q Consensus        49 --~~~~fD~v~~-d~~--~~~~~~~~~~~~~~L~---~--gG~li~   84 (143)
                        ..++||+|++ |.-  ..++...++.+.++|+   |  ||++++
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence              1357999987 432  2456778999999999   9  997655

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.19  E-value=8.9e-06  Score=65.16  Aligned_cols=82  Identities=18%  Similarity=0.120  Sum_probs=52.3

Q ss_pred             cChHHHHHH-HHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc-----------------------------cCCCC
Q 032292            3 LLTIHGQLM-AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------------------------SENEG   51 (143)
Q Consensus         3 ~~~~~~~~l-~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------------------------~~~~~   51 (143)
                      ..+...+.| ..+....+..+|||+|||+|..++.+|+.... .+.                             .....
T Consensus       273 ~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~  352 (425)
T 2jjq_A          273 TNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK  352 (425)
T ss_dssp             SBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT
T ss_pred             cCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc
Confidence            344444433 33333556789999999999999999986321 000                             11223


Q ss_pred             ceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEe
Q 032292           52 SFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        52 ~fD~v~~d~~~~~~~-~~~~~~~~~L~~gG~li~d   85 (143)
                      +||+|++|.....+. ..++.+ ..|+|+|++++.
T Consensus       353 ~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          353 GFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             TCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEE
T ss_pred             CCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEE
Confidence            799999986533333 344444 468999999874

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.17  E-value=3.8e-06  Score=65.10  Aligned_cols=67  Identities=7%  Similarity=0.066  Sum_probs=48.1

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------------cCCCCceeEEEEcCCccch
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------------SENEGSFDYAFVDADKDNY   65 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------------~~~~~~fD~v~~d~~~~~~   65 (143)
                      .+..+|||+|||+|..++. |+.... .+.                               ... ++||+|++|... ..
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~dpP~-~~  270 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIMNLPK-FA  270 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEECCTT-TG
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEECCcH-hH
Confidence            4778999999999999999 873110 000                               111 689999998532 23


Q ss_pred             HHHHHHHHhcccCCeEEEEecc
Q 032292           66 CNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ...++.+.++|+|||++++...
T Consensus       271 ~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          271 HKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEEe
Confidence            4678888999999999987543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.16  E-value=1.5e-05  Score=56.65  Aligned_cols=79  Identities=11%  Similarity=0.008  Sum_probs=50.5

Q ss_pred             ChHHHHHHHHHHh---hcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------cCCC
Q 032292            4 LTIHGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------SENE   50 (143)
Q Consensus         4 ~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------~~~~   50 (143)
                      ++...+.+...+.   ..++.+|||+|||+|..+..+++.......                              ....
T Consensus        31 ~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~  110 (207)
T 1wy7_A           31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN  110 (207)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC
T ss_pred             chHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC
Confidence            3444444444443   235789999999999999999876321000                              1124


Q ss_pred             CceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEE
Q 032292           51 GSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        51 ~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ++||+|+++...     .....+++.+.+.+  |+++++
T Consensus       111 ~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~  147 (207)
T 1wy7_A          111 SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI  147 (207)
T ss_dssp             CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred             CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence            589999998631     23356788888887  666654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.15  E-value=8.2e-06  Score=62.34  Aligned_cols=67  Identities=15%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             hcCCCEEEEEec------cccHHHHHHHhhCCCCCc--------------c---------CCCCceeEEEEcCCcc----
Q 032292           17 LVNAKKTIEIGV------FTGYSLLLTALTIPEDGQ--------------S---------ENEGSFDYAFVDADKD----   63 (143)
Q Consensus        17 ~~~~~~vLeiG~------g~G~~t~~la~~~~~~~~--------------~---------~~~~~fD~v~~d~~~~----   63 (143)
                      ..+..+|||+||      |+|.  ..+++.+++.++              .         ...++||+|++|....    
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~~~g~  138 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPRTKH  138 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGCCCSSCEEEEEECCCCCC---
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCCCCCEEEEECccccCCccCcccEEEEcCCcccccc
Confidence            345679999999      4466  445666653222              0         1236799999975321    


Q ss_pred             ----------chHHHHHHHHhcccCCeEEEEe
Q 032292           64 ----------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ----------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                                .+...++.+.++|+|||.+++.
T Consensus       139 ~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~  170 (290)
T 2xyq_A          139 VTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  170 (290)
T ss_dssp             CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                      1346788999999999999985

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.13  E-value=3.7e-06  Score=65.17  Aligned_cols=79  Identities=16%  Similarity=0.096  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHh----hcCCCEEEEEeccccHHHHHHHhhCCCC----Cc-------------------------------
Q 032292            6 IHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPED----GQ-------------------------------   46 (143)
Q Consensus         6 ~~~~~l~~l~~----~~~~~~vLeiG~g~G~~t~~la~~~~~~----~~-------------------------------   46 (143)
                      ....++..++.    ..+..+|||+|||+|..++.+++.++..    ..                               
T Consensus       113 ~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D  192 (344)
T 2f8l_A          113 SIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD  192 (344)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECC
Confidence            34444444442    2245799999999999999988776421    11                               


Q ss_pred             ---cCCCCceeEEEEcCCcc---------------------chHHHHHHHHhcccCCeEEEE
Q 032292           47 ---SENEGSFDYAFVDADKD---------------------NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 ---~~~~~~fD~v~~d~~~~---------------------~~~~~~~~~~~~L~~gG~li~   84 (143)
                         +...++||+|+++....                     .+..+++.+.++|+|||++++
T Consensus       193 ~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~  254 (344)
T 2f8l_A          193 GLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  254 (344)
T ss_dssp             TTSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             CCCccccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEE
Confidence               12246899999985411                     112578889999999998876

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.13  E-value=3.7e-06  Score=63.91  Aligned_cols=69  Identities=16%  Similarity=0.062  Sum_probs=50.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .+.++|||+|||+|+.++.+|+.......                                  ....+.||.|+++....
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~~  203 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR  203 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCCc
Confidence            46789999999999999999887432100                                  12356799999986432


Q ss_pred             chHHHHHHHHhcccCCeEEEEecc
Q 032292           64 NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                       -..+++.+.++|++||+|.++..
T Consensus       204 -~~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          204 -THEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             -GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -HHHHHHHHHHHcCCCCEEEEEee
Confidence             23567788899999999977543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.09  E-value=1e-05  Score=63.50  Aligned_cols=39  Identities=18%  Similarity=0.049  Sum_probs=31.0

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +.+.....|..++ ..+..+|||+|||+|..++.+|...+
T Consensus       202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~  240 (373)
T 3tm4_A          202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY  240 (373)
T ss_dssp             CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC
Confidence            3455566666666 66788999999999999999998765

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.03  E-value=1.2e-05  Score=61.47  Aligned_cols=69  Identities=22%  Similarity=0.221  Sum_probs=52.6

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDY   55 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~   55 (143)
                      ..+|++||-||-|.|..+..+++..+....                                         ....++||+
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            357999999999999999999876442100                                         234578999


Q ss_pred             EEEcCCccc------h-HHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKDN------Y-CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~~------~-~~~~~~~~~~L~~gG~li~d   85 (143)
                      |++|.....      | .++++.+.+.|+|||+++..
T Consensus       161 Ii~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          161 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             EEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            999974221      1 36889999999999999875

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.00  E-value=2.3e-05  Score=59.25  Aligned_cols=68  Identities=7%  Similarity=-0.115  Sum_probs=49.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      ..|.+|||||||+|..++.++...+. .+                                  ....++||++++.-...
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP  209 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence            45899999999999999988776553 32                                  23478899998864322


Q ss_pred             chH-----HHHHHHHhcccCCeEEEEecc
Q 032292           64 NYC-----NYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ~~~-----~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ...     ..+ +++..|+++|++|.-+.
T Consensus       210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          210 CLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             HHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             HhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            111     245 78899999999986554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.99  E-value=0.00018  Score=53.84  Aligned_cols=68  Identities=12%  Similarity=0.009  Sum_probs=46.1

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEc
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d   59 (143)
                      +.....|.+|||||||+|..++.++   +. .+                                  ....++||+|++.
T Consensus       100 i~~~~~p~~VLDlGCG~gpLal~~~---~~-~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLll  175 (253)
T 3frh_A          100 IFSAETPRRVLDIACGLNPLALYER---GI-ASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIF  175 (253)
T ss_dssp             HTSSCCCSEEEEETCTTTHHHHHHT---TC-SEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEE
T ss_pred             HhcCCCCCeEEEecCCccHHHHHhc---cC-CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHH
Confidence            3344568999999999999999876   22 21                                  2346799999876


Q ss_pred             CCccch-----HHHHHHHHhcccCCeEEEEec
Q 032292           60 ADKDNY-----CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        60 ~~~~~~-----~~~~~~~~~~L~~gG~li~d~   86 (143)
                      -..+..     ...+ .++..|++++++|.-+
T Consensus       176 k~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          176 KLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             SCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            321111     1233 7778999999998654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.98  E-value=1.8e-05  Score=62.47  Aligned_cols=68  Identities=18%  Similarity=0.185  Sum_probs=51.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------c---------------CC--------------
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------S---------------EN--------------   49 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------~---------------~~--------------   49 (143)
                      .++.+|||+|||+|..++.+|+..+....                   .               ..              
T Consensus        46 ~~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           46 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             cCCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            47899999999999999999998653100                   1               11              


Q ss_pred             ---CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           50 ---EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        50 ---~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                         .++||+|++|.- .....+++.+.+.|++||++.+..
T Consensus       126 ~~~~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 AERHRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHSTTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence               247999999863 334678888999999999887753

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.94  E-value=3.8e-06  Score=61.93  Aligned_cols=38  Identities=16%  Similarity=0.083  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHhhc-----CCCEEEEEeccccHHHHHHHhhCC
Q 032292            5 TIHGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         5 ~~~~~~l~~l~~~~-----~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++...++..++...     ++.+|||+|||+|..++.+++..+
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~   88 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN   88 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC
Confidence            45556666666533     457999999999999999887643

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.93  E-value=3.5e-05  Score=58.30  Aligned_cols=38  Identities=13%  Similarity=-0.042  Sum_probs=29.4

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ++...+.+...+...+..+|||||||+|..|..+++..
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~   50 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA   50 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC
Confidence            45555555555556677899999999999999999874

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.93  E-value=1.1e-05  Score=63.99  Aligned_cols=66  Identities=20%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------c-CCCCceeEEEE
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------S-ENEGSFDYAFV   58 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~-~~~~~fD~v~~   58 (143)
                      +..+|||++||+|..++.+|+..+..+.                                       . ...++||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4689999999999999999986531011                                       1 12347999999


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |. ......+++.+.+.|++||+|++.
T Consensus       132 DP-~g~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          132 DP-FGTPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             CC-SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC-CcCHHHHHHHHHHHhCCCCEEEEE
Confidence            97 333456888899999999988774

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.92  E-value=2.1e-05  Score=61.64  Aligned_cols=65  Identities=14%  Similarity=0.105  Sum_probs=47.3

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-C---CCCceeEEEEcC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-E---NEGSFDYAFVDA   60 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~---~~~~fD~v~~d~   60 (143)
                      ++++|||+| |+|..++.+++..+. ++                                  . .   ..++||+|++|.
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            478999999 999999999887542 11                                  1 1   124799999985


Q ss_pred             Cc--cchHHHHHHHHhcccCCe-EEEEe
Q 032292           61 DK--DNYCNYHERLMKLLKVGG-IAVYD   85 (143)
Q Consensus        61 ~~--~~~~~~~~~~~~~L~~gG-~li~d   85 (143)
                      ..  ......++.+.+.|+||| ++++.
T Consensus       250 p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          250 PETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             CSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             CCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            32  124567888999999999 44553

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.90  E-value=2.5e-05  Score=60.03  Aligned_cols=39  Identities=23%  Similarity=0.176  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCC
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG   45 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~   45 (143)
                      ...++..++...+..+|||+|||+|..|+.+|+.+++.+
T Consensus        90 ~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g  128 (309)
T 2b9e_A           90 ASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQG  128 (309)
T ss_dssp             GGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCC
Confidence            344555566666778999999999999999998865433

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.88  E-value=2.4e-05  Score=59.32  Aligned_cols=68  Identities=13%  Similarity=0.056  Sum_probs=47.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-----------------CC-----c-----------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-----------------DG-----Q-----------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-----------------~~-----~-----------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+..+|||+|||+|-++...++..+.                 ..     .           ....++||+|++|.... 
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apns  152 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGESS  152 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccCc
Confidence            35679999999999999988765211                 00     0           22357899999997432 


Q ss_pred             --chH------HHHHHHHhcccCC-eEEEEe
Q 032292           64 --NYC------NYHERLMKLLKVG-GIAVYD   85 (143)
Q Consensus        64 --~~~------~~~~~~~~~L~~g-G~li~d   85 (143)
                        .+.      ..++.+.++|+|| |.+++.
T Consensus       153 G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K  183 (277)
T 3evf_A          153 SSSVTEGERTVRVLDTVEKWLACGVDNFCVK  183 (277)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence              111      1356667999999 999984

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.88  E-value=2e-05  Score=59.65  Aligned_cols=35  Identities=26%  Similarity=0.354  Sum_probs=27.0

Q ss_pred             CceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292           51 GSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        51 ~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++||+|++....     ......++.+.+.|+|||++++.
T Consensus       212 ~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          212 GPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             CCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            579999996532     12256788899999999999874

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.85  E-value=8.6e-05  Score=56.76  Aligned_cols=38  Identities=16%  Similarity=-0.037  Sum_probs=29.0

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ++...+-+...+...+..+|||||||+|+.|..+++..
T Consensus        35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~   72 (295)
T 3gru_A           35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA   72 (295)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC
Confidence            34445555555556677899999999999999999873

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.85  E-value=5.3e-05  Score=57.76  Aligned_cols=37  Identities=14%  Similarity=-0.017  Sum_probs=29.2

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      ++...+.+...+...+..+|||||||+|..|..+++.
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~   63 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL   63 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc
Confidence            4555555556666667789999999999999999876

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.84  E-value=5.9e-05  Score=60.30  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=44.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------c------CCCCceeEEEEcC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------S------ENEGSFDYAFVDA   60 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~------~~~~~fD~v~~d~   60 (143)
                      .+..+|||+|||+|..++.+|+.... .+.                              .      ...++||+|++|-
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dP  364 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP  364 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECC
Confidence            45689999999999999999986221 000                              1      1125799999986


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .-......++.+ ..++|++++.+.
T Consensus       365 Pr~g~~~~~~~l-~~~~p~~ivyvs  388 (433)
T 1uwv_A          365 ARAGAAGVMQQI-IKLEPIRIVYVS  388 (433)
T ss_dssp             CTTCCHHHHHHH-HHHCCSEEEEEE
T ss_pred             CCccHHHHHHHH-HhcCCCeEEEEE
Confidence            543333444444 347899988764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.79  E-value=3.4e-05  Score=58.57  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=19.6

Q ss_pred             HHHHHHHHhcccCCeEEEEeccC
Q 032292           66 CNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ...+..+.+.|+|||+|++....
T Consensus       180 ~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          180 VGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             HHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             HHHHHHHHHhCCCCcEEEEEecc
Confidence            56889999999999999987654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.74  E-value=1.6e-05  Score=55.36  Aligned_cols=71  Identities=13%  Similarity=0.112  Sum_probs=46.8

Q ss_pred             hcCCCEEEEEeccccH---HHHHH--Hh-hCCCCCc---------cC---CCCceeEEEEcCC---c-cchHHHHHHHHh
Q 032292           17 LVNAKKTIEIGVFTGY---SLLLT--AL-TIPEDGQ---------SE---NEGSFDYAFVDAD---K-DNYCNYHERLMK   74 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~---~t~~l--a~-~~~~~~~---------~~---~~~~fD~v~~d~~---~-~~~~~~~~~~~~   74 (143)
                      ..+..+|||+|||...   +...+  |+ ..+....         +.   .+++||+|++...   . .+....++++.+
T Consensus        10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r   89 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIAR   89 (176)
T ss_dssp             CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHH
T ss_pred             CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHH
Confidence            3467899999999753   11111  11 1221111         23   5678999998542   2 456789999999


Q ss_pred             cccCCeEEEEecc
Q 032292           75 LLKVGGIAVYDNT   87 (143)
Q Consensus        75 ~L~~gG~li~d~~   87 (143)
                      +|||||.+++.+.
T Consensus        90 ~LkpgG~l~~~~~  102 (176)
T 2ld4_A           90 ILRPGGCLFLKEP  102 (176)
T ss_dssp             HEEEEEEEEEEEE
T ss_pred             HCCCCEEEEEEcc
Confidence            9999999998543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.63  E-value=6.6e-05  Score=58.76  Aligned_cols=22  Identities=18%  Similarity=0.028  Sum_probs=19.8

Q ss_pred             CCEEEEEeccccHHHHHHHhhC
Q 032292           20 AKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      +.+|||+|||+|..++.+|+..
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~  235 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF  235 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS
T ss_pred             CCEEEEccCCCCHHHHHHHhcC
Confidence            5789999999999999999864

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.60  E-value=5.4e-05  Score=57.44  Aligned_cols=68  Identities=12%  Similarity=-0.025  Sum_probs=47.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC----------C-----------Cc------------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE----------D-----------GQ------------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~----------~-----------~~------------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+..+|||+|||+|.++...++..+.          +           +.            ....+++|+|++|.... 
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApns  168 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGESS  168 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccCC
Confidence            45679999999999999998863221          0           00            12357899999997542 


Q ss_pred             ------chH--HHHHHHHhcccCC--eEEEEe
Q 032292           64 ------NYC--NYHERLMKLLKVG--GIAVYD   85 (143)
Q Consensus        64 ------~~~--~~~~~~~~~L~~g--G~li~d   85 (143)
                            ++.  ..++.+.++|+||  |.+++-
T Consensus       169 G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          169 PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence                  111  2355667999999  999884

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.60  E-value=0.0001  Score=59.07  Aligned_cols=37  Identities=16%  Similarity=-0.093  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      +...++|..++...+..+|||.|||+|...+.+++.+
T Consensus       157 ~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l  193 (445)
T 2okc_A          157 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYM  193 (445)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHH
Confidence            3455666666655556799999999999988887653

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.59  E-value=0.00026  Score=55.96  Aligned_cols=106  Identities=17%  Similarity=0.062  Sum_probs=66.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------------cCCCCc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------------SENEGS   52 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------------~~~~~~   52 (143)
                      +|++||-||-|.|..+..+.+.-+....                                              ....++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            5799999999999999988764221000                                              012357


Q ss_pred             eeEEEEcCCc----c--------c-hHHHHHHHHhcccCCeEEEEec-cCCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 032292           53 FDYAFVDADK----D--------N-YCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  118 (143)
Q Consensus        53 fD~v~~d~~~----~--------~-~~~~~~~~~~~L~~gG~li~d~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~  118 (143)
                      ||+|++|...    .        - ..++++.+.+.|+|||+++... ..+                  .....+.+.+.
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~------------------~~~~~~~i~~t  346 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN------------------LTEALSLYEEQ  346 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT------------------CHHHHHHHHHH
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc------------------chhHHHHHHHH
Confidence            9999999521    0        0 1356788899999999998752 111                  11234555555


Q ss_pred             hhcC-CCeeE----EEeec---CCeeEEEEEc
Q 032292          119 LADD-PRVQL----SHVAL---GDGITICRRI  142 (143)
Q Consensus       119 l~~~-~~~~~----~~lp~---~~Gl~~~~k~  142 (143)
                      +..- +.+..    +.+|.   .+|..++.|+
T Consensus       347 l~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          347 LGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             HTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             HHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            5532 33322    23353   5788888875

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.51  E-value=0.00021  Score=54.65  Aligned_cols=68  Identities=12%  Similarity=0.045  Sum_probs=47.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC----------C-----------Cc------------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE----------D-----------GQ------------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~----------~-----------~~------------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+.++|||+||++|-++..+++..+.          +           +.            ....+++|+|++|.... 
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APns  159 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGESS  159 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCCC
Confidence            35689999999999999999974210          0           00            12356899999997542 


Q ss_pred             ------ch--HHHHHHHHhcccCC-eEEEEe
Q 032292           64 ------NY--CNYHERLMKLLKVG-GIAVYD   85 (143)
Q Consensus        64 ------~~--~~~~~~~~~~L~~g-G~li~d   85 (143)
                            ++  ...++.+.++|+|| |.+++-
T Consensus       160 G~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          160 SNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence                  11  12356667999999 999985

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.46  E-value=9.1e-05  Score=61.18  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=21.1

Q ss_pred             cCCCEEEEEeccccHHHHHHHhh
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      .+|.+|||||||.|..+.+||+.
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~   87 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK   87 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC
Confidence            46889999999999999999986

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.35  E-value=0.00013  Score=54.49  Aligned_cols=39  Identities=13%  Similarity=-0.055  Sum_probs=30.6

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      +++...+-+...+...+..+|||||||+|..|..+++..
T Consensus        13 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~   51 (255)
T 3tqs_A           13 HDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC   51 (255)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC
Confidence            345555666666666678899999999999999999864

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.30  E-value=0.00026  Score=55.89  Aligned_cols=18  Identities=11%  Similarity=0.278  Sum_probs=16.3

Q ss_pred             CCEEEEEeccccHHHHHH
Q 032292           20 AKKTIEIGVFTGYSLLLT   37 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~l   37 (143)
                      +-+|+|+||++|..|+.+
T Consensus        53 ~~~IaDlGCssG~Nt~~~   70 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHI   70 (374)
T ss_dssp             CEEEEEETCCSSHHHHHH
T ss_pred             ceEEEecCCCCChhHHHH
Confidence            478999999999999987

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.26  E-value=0.00024  Score=53.84  Aligned_cols=39  Identities=13%  Similarity=-0.026  Sum_probs=30.1

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++...+-+...+...+..+|||||||+|..|..+++...
T Consensus        27 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~   65 (279)
T 3uzu_A           27 DHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA   65 (279)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC
Confidence            444555555555666788999999999999999998754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.20  E-value=0.00023  Score=52.58  Aligned_cols=37  Identities=19%  Similarity=0.076  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      +...+.+...+...+..+|||||||+|..|..+++..
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~   52 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC   52 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC
Confidence            3334444444444567899999999999999999874

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.17  E-value=0.00031  Score=52.20  Aligned_cols=36  Identities=17%  Similarity=0.035  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +...+-+...+...+..+|||||||+|..|..+++.
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~   52 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH   52 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc
Confidence            444444555555556789999999999999999876

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.15  E-value=0.0039  Score=53.74  Aligned_cols=39  Identities=8%  Similarity=0.050  Sum_probs=29.0

Q ss_pred             ChHHHHHHHHHHhh------cCCCEEEEEeccccHHHHHHHhhCC
Q 032292            4 LTIHGQLMAMLLRL------VNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         4 ~~~~~~~l~~l~~~------~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +++.+.+|..++..      ....+|||.|||+|...+.+++.++
T Consensus       300 P~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~  344 (878)
T 3s1s_A          300 DIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFN  344 (878)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTST
T ss_pred             CHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhc
Confidence            45667777777321      1357999999999999999887764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.13  E-value=0.00043  Score=52.22  Aligned_cols=37  Identities=14%  Similarity=-0.057  Sum_probs=27.9

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ++...+-+...+...+. +|||||||+|..|..+++..
T Consensus        32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~   68 (271)
T 3fut_A           32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG   68 (271)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT
T ss_pred             CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC
Confidence            34445555555555566 99999999999999999874

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.07  E-value=0.00033  Score=52.60  Aligned_cols=68  Identities=15%  Similarity=0.057  Sum_probs=46.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhh--CC--------------CC-----Cc------------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALT--IP--------------ED-----GQ------------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~--~~--------------~~-----~~------------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+..+|||+||+.|-|+.+.++.  +.              +-     +.            .....++|+|++|.... 
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~DvVLSDMAPnS  151 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIGESS  151 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCCCEEEeCCCCCC
Confidence            45679999999999999999887  21              10     10            01123799999997431 


Q ss_pred             -----ch---HHHHHHHHhcccCCe-EEEEe
Q 032292           64 -----NY---CNYHERLMKLLKVGG-IAVYD   85 (143)
Q Consensus        64 -----~~---~~~~~~~~~~L~~gG-~li~d   85 (143)
                           +.   ..+++.+.++|+||| .+++-
T Consensus       152 G~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          152 PSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence                 11   125667779999999 88773

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.96  E-value=0.00094  Score=54.94  Aligned_cols=36  Identities=11%  Similarity=-0.093  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ...++|..++...+..+|+|.+||+|...+.+++.+
T Consensus       156 ~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l  191 (541)
T 2ar0_A          156 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYV  191 (541)
T ss_dssp             HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHH
Confidence            445666666655556799999999999888776543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=96.96  E-value=0.00053  Score=51.08  Aligned_cols=35  Identities=9%  Similarity=-0.118  Sum_probs=26.2

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHh
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTAL   39 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~   39 (143)
                      ++...+.+...+...+..+|||||||+|+.|. +++
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~   40 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG   40 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh
Confidence            44555555555566667899999999999999 765

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.96  E-value=0.00058  Score=57.32  Aligned_cols=36  Identities=14%  Similarity=0.161  Sum_probs=25.6

Q ss_pred             CCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEE
Q 032292           48 ENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        48 ~~~~~fD~v~~d~-----~~~~~~~~~~~~~~~L~~gG~li   83 (143)
                      ..+++.|+|++.-     ..+..++.+....++|||||+++
T Consensus       424 ~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          424 VAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             cCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            3468999998742     12334566666679999999986

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.95  E-value=0.0062  Score=50.15  Aligned_cols=39  Identities=15%  Similarity=-0.003  Sum_probs=30.1

Q ss_pred             ChHHHHHHHHHHhh----cCCCEEEEEeccccHHHHHHHhhCC
Q 032292            4 LTIHGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         4 ~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++...++|..++..    ....+|+|.+||+|...+.+++.+.
T Consensus       202 P~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~  244 (542)
T 3lkd_A          202 PQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSR  244 (542)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCS
T ss_pred             cHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHH
Confidence            45667788887763    3567999999999998888877764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=96.94  E-value=0.0023  Score=52.67  Aligned_cols=35  Identities=9%  Similarity=-0.012  Sum_probs=25.6

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHh
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTAL   39 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~   39 (143)
                      ++...++|..++... +.+|+|.+||+|...+.+++
T Consensus       230 P~~Vv~lmv~ll~p~-~~~VlDPaCGSG~fLi~a~~  264 (544)
T 3khk_A          230 PKSIVTLIVEMLEPY-KGRVYDPAMGSGGFFVSSDK  264 (544)
T ss_dssp             CHHHHHHHHHHHCCC-SEEEEESSCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcC-CCeEeCcccCcCcHHHHHHH
Confidence            445667777777543 35999999999988777654

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.88  E-value=0.0032  Score=48.37  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=27.1

Q ss_pred             CCceeEEEEcCCcc--c---h-HHHHHHHHhcccCCeEEEE
Q 032292           50 EGSFDYAFVDADKD--N---Y-CNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        50 ~~~fD~v~~d~~~~--~---~-~~~~~~~~~~L~~gG~li~   84 (143)
                      ..+||++|.|+-..  +   | .+.|+.+.++++|||+++-
T Consensus       184 ~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          184 NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            34799999998321  1   1 4689999999999999974

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.76  E-value=0.0024  Score=50.47  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=18.3

Q ss_pred             CCEEEEEeccccHHHHHHHhh
Q 032292           20 AKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +-+|+|+||++|..|+.+...
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~   73 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRD   73 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHH
T ss_pred             ceEEEecCCCCCchHHHHHHH
Confidence            578999999999999987765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.73  E-value=0.00029  Score=51.84  Aligned_cols=37  Identities=19%  Similarity=0.007  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      +...+.+...+...+..+|||||||+|..+..+++..
T Consensus        15 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~   51 (245)
T 1yub_A           15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS   51 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC
Confidence            3334444445555567899999999999999999874

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.72  E-value=0.0078  Score=41.52  Aligned_cols=33  Identities=15%  Similarity=0.146  Sum_probs=25.4

Q ss_pred             CCCEEEEEecccc-HHHHHHHhhCCCCCccCCCCceeEEEEcCC
Q 032292           19 NAKKTIEIGVFTG-YSLLLTALTIPEDGQSENEGSFDYAFVDAD   61 (143)
Q Consensus        19 ~~~~vLeiG~g~G-~~t~~la~~~~~~~~~~~~~~fD~v~~d~~   61 (143)
                      .+.+|||||||.| ..+.+|++...          ||++-+|..
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g----------~~V~atDIn   68 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSK----------VDLVLTDIK   68 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSC----------CEEEEECSS
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCC----------CeEEEEECC
Confidence            4679999999999 59999987533          566666654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.64  E-value=0.0055  Score=48.43  Aligned_cols=36  Identities=11%  Similarity=0.009  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +.-+..|..++...+...+||.+||+|..++..|..
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~  222 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALI  222 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHH
Confidence            344444555555566789999999999998887754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.59  E-value=0.0036  Score=47.92  Aligned_cols=67  Identities=15%  Similarity=0.044  Sum_probs=47.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC---------C-c-----------------------cCCCCceeEEEEcCCccc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED---------G-Q-----------------------SENEGSFDYAFVDADKDN   64 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~---------~-~-----------------------~~~~~~fD~v~~d~~~~~   64 (143)
                      .+..+|||+||++|-++.+.+...+..         + .                       .....++|+|++|.....
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ivcDigeSs  172 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIGESS  172 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCEEEEECccCC
Confidence            356799999999999999877664321         1 0                       122477999999975421


Q ss_pred             ---------hHHHHHHHHhcccCC-eEEEE
Q 032292           65 ---------YCNYHERLMKLLKVG-GIAVY   84 (143)
Q Consensus        65 ---------~~~~~~~~~~~L~~g-G~li~   84 (143)
                               -...++.+.++|++| |-+++
T Consensus       173 ~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          173 SSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence                     123677778999998 77776

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=96.58  E-value=0.0067  Score=47.81  Aligned_cols=35  Identities=11%  Similarity=0.043  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      .-+..|-.++...+...+||.+||+|..++..|..
T Consensus       181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~  215 (384)
T 3ldg_A          181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMI  215 (384)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHH
Confidence            34444555555566789999999999998887754

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=96.54  E-value=0.0041  Score=47.53  Aligned_cols=26  Identities=15%  Similarity=-0.018  Sum_probs=23.1

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCC
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ..+..+|||+|||+|..+..+++.++
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~   49 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCP   49 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCC
Confidence            44678999999999999999999876

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.52  E-value=0.0053  Score=48.32  Aligned_cols=33  Identities=12%  Similarity=0.054  Sum_probs=24.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +..|..++...+...|||.+||+|..++.+|..
T Consensus       184 Aa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~  216 (385)
T 3ldu_A          184 AAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMI  216 (385)
T ss_dssp             HHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHH
Confidence            344444444556789999999999999988765

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.47  E-value=0.005  Score=48.22  Aligned_cols=34  Identities=18%  Similarity=0.045  Sum_probs=26.7

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      .+...++...+..+|||+.++.|.=|..||....
T Consensus       138 ~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~  171 (359)
T 4fzv_A          138 LLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC  171 (359)
T ss_dssp             HHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC
T ss_pred             HHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC
Confidence            4455555666778999999999999999987654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.22  E-value=0.011  Score=43.93  Aligned_cols=66  Identities=14%  Similarity=0.035  Sum_probs=45.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC----------Cc-----------------------cCCCCceeEEEEcCCccc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED----------GQ-----------------------SENEGSFDYAFVDADKDN   64 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~----------~~-----------------------~~~~~~fD~v~~d~~~~~   64 (143)
                      .+..+|||+||++|-++.+.+...+..          +.                       .....++|.|++|.....
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~DtllcDIgeSs  156 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDIGESS  156 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCSEEEECCCCCC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccccEEEEecCCCC
Confidence            456799999999999999887764321          00                       123477999999975421


Q ss_pred             ---------hHHHHHHHHhcccCCeEEEE
Q 032292           65 ---------YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        65 ---------~~~~~~~~~~~L~~gG~li~   84 (143)
                               -...++.+.++|++ |-+++
T Consensus       157 ~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          157 PSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             SCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             CChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence                     12367777899998 55555

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.13  E-value=0.0012  Score=55.97  Aligned_cols=34  Identities=15%  Similarity=0.094  Sum_probs=24.9

Q ss_pred             CCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEE
Q 032292           50 EGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        50 ~~~fD~v~~d~-----~~~~~~~~~~~~~~~L~~gG~li   83 (143)
                      .++.|+|++.-     ..+-.++.++.+.++|+|||+++
T Consensus       493 ~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          493 FEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             CCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             CCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            57899998752     12234567777779999999986

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.08  E-value=0.015  Score=45.82  Aligned_cols=61  Identities=13%  Similarity=0.125  Sum_probs=40.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC----C-Cc---------------------cCCCCceeEEEEcCCccchHHHHHH
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE----D-GQ---------------------SENEGSFDYAFVDADKDNYCNYHER   71 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~----~-~~---------------------~~~~~~fD~v~~d~~~~~~~~~~~~   71 (143)
                      .+..++||+||++|.+|..+++.-..    + +.                     ....++||+|++|... +.......
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~-~p~~~~~l  288 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE-KPAKVAAL  288 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS-CHHHHHHH
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC-ChHHhHHH
Confidence            46789999999999999999876321    0 00                     1234689999999754 34444444


Q ss_pred             HHhcccCC
Q 032292           72 LMKLLKVG   79 (143)
Q Consensus        72 ~~~~L~~g   79 (143)
                      +.++|..+
T Consensus       289 ~~~wl~~~  296 (375)
T 4auk_A          289 MAQWLVNG  296 (375)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhcc
Confidence            44544444

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.06  E-value=0.017  Score=47.34  Aligned_cols=37  Identities=11%  Similarity=-0.056  Sum_probs=29.1

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      ++...++|..++......+|+|-.||+|...+...+.
T Consensus       202 P~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~  238 (530)
T 3ufb_A          202 PRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEH  238 (530)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHH
T ss_pred             cHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHH
Confidence            4566788888887777789999999999887765544

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=95.93  E-value=0.0026  Score=49.85  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=16.8

Q ss_pred             CCEEEEEeccccHHHHHHHhh
Q 032292           20 AKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +-+|+|+||++|..|+.+...
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~   72 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTE   72 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGT
T ss_pred             ceEEEecCCCCCcchHHHHHH
Confidence            457899999999888876544

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=95.81  E-value=0.0032  Score=46.96  Aligned_cols=33  Identities=15%  Similarity=0.108  Sum_probs=25.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      ..++...+...+..+|||+|||+|..++.+|+.
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~  104 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL  104 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh
Confidence            344555555455689999999999999999986

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.74  E-value=0.017  Score=48.40  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=27.6

Q ss_pred             CCceeEEEEcCCccch------HHHHHHHHhcccCCeEEEE
Q 032292           50 EGSFDYAFVDADKDNY------CNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        50 ~~~fD~v~~d~~~~~~------~~~~~~~~~~L~~gG~li~   84 (143)
                      ...+|.+|+|+-...+      .+.|..+.+++++||.+..
T Consensus       169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t  209 (689)
T 3pvc_A          169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST  209 (689)
T ss_dssp             TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred             CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence            3679999999865433      5788999999999999875

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.61  E-value=0.028  Score=43.20  Aligned_cols=65  Identities=14%  Similarity=0.234  Sum_probs=42.6

Q ss_pred             CCCEEEEEec------cccHHHHHHHhhCCCCCc-----------------------cCCCCceeEEEEcCCc-------
Q 032292           19 NAKKTIEIGV------FTGYSLLLTALTIPEDGQ-----------------------SENEGSFDYAFVDADK-------   62 (143)
Q Consensus        19 ~~~~vLeiG~------g~G~~t~~la~~~~~~~~-----------------------~~~~~~fD~v~~d~~~-------   62 (143)
                      ...+|||+|+      ..|.+  .+.+..+.++.                       ....++||+|++|...       
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~~~IqGD~~~~~~~~k~DLVISDMAPNtTG~~D  186 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPRTKHVT  186 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSSEEEESCGGGEEESSCEEEEEECCCCTTSCSSC
T ss_pred             CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCCeEEEccccccccCCCCCEEEecCCCCcCCccc
Confidence            4589999995      77773  33444453223                       1123789999998531       


Q ss_pred             -c----c--hHHHHHHHHhcccCCeEEEEe
Q 032292           63 -D----N--YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 -~----~--~~~~~~~~~~~L~~gG~li~d   85 (143)
                       .    .  ...+++-+.++|+|||.+++-
T Consensus       187 ~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          187 KENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             SCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence             1    1  123566677999999999985

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.20  E-value=0.045  Score=46.37  Aligned_cols=35  Identities=11%  Similarity=0.008  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      .-+..|..++...+...+||.+||+|..++..|..
T Consensus       177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~  211 (703)
T 3v97_A          177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAML  211 (703)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHH
Confidence            34444555555556789999999999998887754

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=94.55  E-value=0.013  Score=43.70  Aligned_cols=32  Identities=9%  Similarity=0.088  Sum_probs=25.3

Q ss_pred             HHHHHHHhhcCC--CEEEEEeccccHHHHHHHhh
Q 032292            9 QLMAMLLRLVNA--KKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         9 ~~l~~l~~~~~~--~~vLeiG~g~G~~t~~la~~   40 (143)
                      +.+...+...++  .+|||+|||+|..++++|+.
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~  109 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV  109 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc
Confidence            444455555566  89999999999999999986

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=93.24  E-value=0.044  Score=43.61  Aligned_cols=21  Identities=10%  Similarity=0.121  Sum_probs=19.5

Q ss_pred             CCEEEEEeccccHHHHHHHhh
Q 032292           20 AKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~   40 (143)
                      ..+|||+|||+|..++.+|+.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~  114 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK  114 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT
T ss_pred             CCEEEEeCCCchHHHHHHHhc
Confidence            689999999999999999876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.59  E-value=0.51  Score=35.33  Aligned_cols=66  Identities=18%  Similarity=0.038  Sum_probs=38.4

Q ss_pred             HHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCCCCccCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           10 LMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        10 ~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ++..++..  .+...|||++||+|..++.+++. .          ..++-+|.+......+-+.+........+.++++
T Consensus       224 l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~-g----------~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~  291 (297)
T 2zig_A          224 LAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW-G----------RRALGVELVPRYAQLAKERFAREVPGFSLEVLDG  291 (297)
T ss_dssp             HHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHT-T----------CEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc-C----------CeEEEEeCCHHHHHHHHHHHHHhccccchhhCCc
Confidence            44444433  35689999999999999987653 2          2577777764333333334434333334444443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=92.58  E-value=0.086  Score=50.47  Aligned_cols=68  Identities=15%  Similarity=0.108  Sum_probs=32.1

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCCCC-------------------c---------c------C----CCCceeEEEEcCC
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPEDG-------------------Q---------S------E----NEGSFDYAFVDAD   61 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~~~-------------------~---------~------~----~~~~fD~v~~d~~   61 (143)
                      ..+|||||.|+|..+..+.+.+....                   +         .      .    ....||+|+....
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence            46999999999987766655543200                   0         0      0    2346899987543


Q ss_pred             c---cchHHHHHHHHhcccCCeEEEEecc
Q 032292           62 K---DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        62 ~---~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .   .+....+..+.++|+|||.+++...
T Consensus      1321 l~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1321 LATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             --------------------CCEEEEEEC
T ss_pred             ccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            2   2345567888899999999988654

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.29  E-value=0.18  Score=38.82  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=46.1

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc-----------------------c-----------CCCCceeEEEEcC
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-----------------------S-----------ENEGSFDYAFVDA   60 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~-----------------------~-----------~~~~~fD~v~~d~   60 (143)
                      ...+.++||.+|+|. |..++.+|+..+....                       .           ...+.+|+||-..
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~  266 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST  266 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence            345678999999986 8888888887653100                       0           0112689988543


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..   ...++.+.+.|+++|.++.-
T Consensus       267 g~---~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          267 GS---PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             CC---HHHHHHHHHTEEEEEEEEEC
T ss_pred             CC---HHHHHHHHHHHhcCCEEEEe
Confidence            32   34577889999999999863

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.22  E-value=1.3  Score=30.82  Aligned_cols=80  Identities=11%  Similarity=0.108  Sum_probs=51.9

Q ss_pred             HHHHHHhhc--CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------c----CCCCcee
Q 032292           10 LMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------S----ENEGSFD   54 (143)
Q Consensus        10 ~l~~l~~~~--~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~----~~~~~fD   54 (143)
                      .|...+...  -+.-|||+|-|.|-.=-.|.+.+|+.-.                             +    ....+.-
T Consensus        29 ~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~  108 (174)
T 3iht_A           29 CLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATAS  108 (174)
T ss_dssp             HHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHHHhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceE
Confidence            344444433  3578999999999999999999885211                             1    1134556


Q ss_pred             EEEEcCCccchH------H-HHHHHHhcccCCeEEEEeccCC
Q 032292           55 YAFVDADKDNYC------N-YHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        55 ~v~~d~~~~~~~------~-~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ++..|-...+-.      . .-..+.++|+|||+++.+.-++
T Consensus       109 LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl~  150 (174)
T 3iht_A          109 LVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRMY  150 (174)
T ss_dssp             EEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCCC
T ss_pred             EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccC
Confidence            667765433221      1 2234569999999999987664

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.14  E-value=0.57  Score=36.09  Aligned_cols=69  Identities=17%  Similarity=0.079  Sum_probs=48.0

Q ss_pred             HHhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------------------c---CCCCceeE
Q 032292           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------------------S---ENEGSFDY   55 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------------------~---~~~~~fD~   55 (143)
                      .+...+.++||-+|+|. |..++.+|+..+..-.                                  .   ...+.+|+
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dv  256 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDV  256 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCE
Confidence            34556788999999875 7888888888764100                                  0   12347999


Q ss_pred             EEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ||-....   ...++.+.+.|++||.++.-
T Consensus       257 vid~~G~---~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          257 VIECAGV---AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             EEECSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence            8854321   34677889999999999864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.10  E-value=0.51  Score=35.95  Aligned_cols=70  Identities=14%  Similarity=0.123  Sum_probs=47.3

Q ss_pred             HHhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEE
Q 032292           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAF   57 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~   57 (143)
                      .+...+.++||-+|+|. |..++.+|+..+..-.                                  . .....+|+||
T Consensus       161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~  240 (352)
T 3fpc_A          161 LANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVV  240 (352)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEE
Confidence            34456778999999876 7888888888753111                                  0 1123699998


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           58 VDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      -....   ...++.+++.|++||.++.-.
T Consensus       241 d~~g~---~~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          241 IAGGD---VHTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             ECSSC---TTHHHHHHHHEEEEEEEEECC
T ss_pred             ECCCC---hHHHHHHHHHHhcCCEEEEec
Confidence            44332   235678889999999998643

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=91.63  E-value=0.24  Score=38.59  Aligned_cols=38  Identities=11%  Similarity=-0.096  Sum_probs=26.5

Q ss_pred             ChHHHHHHHHHHhhcC------CCEEEEEeccccHHHHHHHhhC
Q 032292            4 LTIHGQLMAMLLRLVN------AKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~------~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ++...+=+...+...+      ...|||||.|.|..|..|++..
T Consensus        37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~   80 (353)
T 1i4w_A           37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY   80 (353)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhC
Confidence            3444444444444432      4789999999999999999763

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=91.32  E-value=0.19  Score=34.92  Aligned_cols=64  Identities=14%  Similarity=0.077  Sum_probs=42.5

Q ss_pred             hcCCCEEEEEec--cccHHHHHHHhhCCCCCc---------------------------------c-CCCCceeEEEEcC
Q 032292           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ---------------------------------S-ENEGSFDYAFVDA   60 (143)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~---------------------------------~-~~~~~fD~v~~d~   60 (143)
                      ..+.++||.+|+  |.|..++.+++..+..-.                                 . ...+.+|.++-.+
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~  115 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSL  115 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECC
Confidence            446789999994  667777777665432100                                 0 1123589988655


Q ss_pred             CccchHHHHHHHHhcccCCeEEEE
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .    ...++.+.+.|++||.++.
T Consensus       116 g----~~~~~~~~~~l~~~G~~v~  135 (198)
T 1pqw_A          116 A----GEAIQRGVQILAPGGRFIE  135 (198)
T ss_dssp             C----THHHHHHHHTEEEEEEEEE
T ss_pred             c----hHHHHHHHHHhccCCEEEE
Confidence            3    2457788899999999986

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.13  E-value=0.42  Score=39.84  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             CCceeEEEEcCCcc----c--hHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADKD----N--YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~~----~--~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...||.+|.|+-..    +  -.+.|..+.+++++||.+...
T Consensus       177 ~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          177 NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             CCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence            36799999998421    1  146788999999999998753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=90.61  E-value=2  Score=32.70  Aligned_cols=67  Identities=13%  Similarity=0.031  Sum_probs=45.5

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------cCC---------------CCceeEEE
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------SEN---------------EGSFDYAF   57 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~~~---------------~~~fD~v~   57 (143)
                      ...+.++||-+|+|. |..++.+|+..+....                      ...               .+.+|+||
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vi  247 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI  247 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence            445678999999875 8888889988753100                      001               02488887


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           58 VDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      -....   ...++.+++.|++||.++.-
T Consensus       248 d~~g~---~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          248 ECTGA---EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             ECSCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred             ECCCC---hHHHHHHHHHhcCCCEEEEE
Confidence            54332   34567888999999999863

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=89.72  E-value=0.97  Score=35.07  Aligned_cols=70  Identities=10%  Similarity=0.022  Sum_probs=46.7

Q ss_pred             HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc-----------------------c--CC----------CCceeEEEE
Q 032292           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-----------------------S--EN----------EGSFDYAFV   58 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~-----------------------~--~~----------~~~fD~v~~   58 (143)
                      +...+.++||.+|+|. |..++.+|+..+....                       .  ..          ...||+||-
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid  260 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVD  260 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEE
Confidence            3455678999999976 8888889887653100                       0  00          115899885


Q ss_pred             cCCccc-----------hHHHHHHHHhcccCCeEEEE
Q 032292           59 DADKDN-----------YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        59 d~~~~~-----------~~~~~~~~~~~L~~gG~li~   84 (143)
                      ......           ....++.+++.|++||.+++
T Consensus       261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~  297 (398)
T 2dph_A          261 AVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI  297 (398)
T ss_dssp             CSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred             CCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence            443221           12467888999999999875

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=89.61  E-value=0.34  Score=36.61  Aligned_cols=41  Identities=20%  Similarity=0.368  Sum_probs=28.0

Q ss_pred             CCCceeEEEEcCCc----cchHHH----------HHHHHhcccCCeEEEEeccCC
Q 032292           49 NEGSFDYAFVDADK----DNYCNY----------HERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        49 ~~~~fD~v~~d~~~----~~~~~~----------~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .-+.||+||++...    ++|..+          -..++++|+|||.+++-..-+
T Consensus       208 ~~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGy  262 (324)
T 3trk_A          208 TLGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGY  262 (324)
T ss_dssp             GGCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCC
T ss_pred             cCCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecc
Confidence            34899999999753    334432          224458999999998865443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.57  E-value=0.51  Score=35.72  Aligned_cols=67  Identities=12%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc---------------------cC-----------CCCceeEEEEcCCc
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ---------------------SE-----------NEGSFDYAFVDADK   62 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~---------------------~~-----------~~~~fD~v~~d~~~   62 (143)
                      ...+.++||-+|+|. |..++.+|+..+..-.                     ..           ..+.+|.|+.....
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~  242 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVS  242 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCC
Confidence            345678999999875 8899999988753100                     00           01268888765432


Q ss_pred             cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                         ...++.+.+.|+++|.++.-
T Consensus       243 ---~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          243 ---PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEEC
T ss_pred             ---HHHHHHHHHHhccCCEEEEe
Confidence               44677888999999999864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.47  E-value=0.46  Score=35.88  Aligned_cols=67  Identities=12%  Similarity=-0.022  Sum_probs=46.3

Q ss_pred             HhhcCCCEEEEEec--cccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEE
Q 032292           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~   58 (143)
                      +...+.++||-+|+  |.|..++.+++..+..-.                                  ....+.+|+||-
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~  224 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFD  224 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEE
Confidence            44567789999998  667888888877653100                                  001246898876


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....    ..++.+.+.|+++|.++.-
T Consensus       225 ~~g~----~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          225 NVGG----EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             SSCH----HHHHHHHTTEEEEEEEEEC
T ss_pred             CCCc----chHHHHHHHHhhCCEEEEE
Confidence            5442    4678889999999999863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=88.50  E-value=0.39  Score=36.27  Aligned_cols=65  Identities=17%  Similarity=0.049  Sum_probs=44.2

Q ss_pred             hcCCCEEEEEec--cccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcC
Q 032292           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~   60 (143)
                      ..+.++||-+|+  |.|..++.+++..+..-.                                  ......+|+||-..
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~  225 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSV  225 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECC
Confidence            346789999994  667788888887643100                                  01134699988654


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..    ..++.+.+.|++||.++.-
T Consensus       226 g~----~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          226 GK----DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             GG----GGHHHHHHHEEEEEEEEEC
T ss_pred             Ch----HHHHHHHHHhccCCEEEEE
Confidence            42    3567788999999999863

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=88.22  E-value=1.5  Score=33.97  Aligned_cols=70  Identities=16%  Similarity=0.062  Sum_probs=46.8

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc-----------------------cC-C-----------CCceeEEEEc
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-----------------------SE-N-----------EGSFDYAFVD   59 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~-----------------------~~-~-----------~~~fD~v~~d   59 (143)
                      ...+.++||-+|+|. |..++.+|+..+....                       .. .           ...+|+||-.
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~  261 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDA  261 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEEC
Confidence            445678999999865 8888889988753101                       00 0           1258998854


Q ss_pred             CCccc------------hHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKDN------------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~~------------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .....            ....++.+++.|++||.++.-
T Consensus       262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          262 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            33221            124678889999999999764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=87.98  E-value=2.9  Score=31.79  Aligned_cols=68  Identities=12%  Similarity=-0.088  Sum_probs=45.8

Q ss_pred             HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc---------------c------------------------CCCCcee
Q 032292           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ---------------S------------------------ENEGSFD   54 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~---------------~------------------------~~~~~fD   54 (143)
                      +...+.++||-+|+|. |..++.+|+..+....               .                        .....+|
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~D  254 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPA  254 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCC
Confidence            3455778999999865 7888889988764211               0                        0123578


Q ss_pred             EEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           55 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        55 ~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +||-....   ...++.+.+.|++||.++.-
T Consensus       255 vvid~~g~---~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          255 VALECTGV---ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             EEEECSCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEEECCCC---hHHHHHHHHHhcCCCEEEEE
Confidence            87743321   34577888999999999863

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=87.52  E-value=0.62  Score=34.20  Aligned_cols=36  Identities=14%  Similarity=0.257  Sum_probs=25.6

Q ss_pred             CCceeEEEEcCCc--c-----------ch----HHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADK--D-----------NY----CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~--~-----------~~----~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+||+|-.-  .           +|    ...++.+.++|+++|.+++.
T Consensus        21 ~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A           21 NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            3689999998521  1           12    24566778999999998765

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=87.49  E-value=0.51  Score=35.55  Aligned_cols=65  Identities=6%  Similarity=-0.108  Sum_probs=44.1

Q ss_pred             hcCCCEEEEEe--ccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcC
Q 032292           17 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~   60 (143)
                      ..+.++||-+|  .|.|..++.+|+..+..-.                                  ......+|+||-..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~  217 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGV  217 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECC
Confidence            34678999999  4568888888887542100                                  01124699988654


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..    ..++.+.+.|++||.++.-
T Consensus       218 g~----~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          218 GQ----DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             CG----GGHHHHHTTEEEEEEEEEC
T ss_pred             Ch----HHHHHHHHHhcCCCEEEEE
Confidence            43    3466788999999999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=87.48  E-value=1.6  Score=34.00  Aligned_cols=27  Identities=7%  Similarity=0.047  Sum_probs=20.5

Q ss_pred             hcCCCEEEEEeccc-cHHHHHHHhhCCC
Q 032292           17 LVNAKKTIEIGVFT-GYSLLLTALTIPE   43 (143)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~t~~la~~~~~   43 (143)
                      ..+.++||-+|+|. |..++.+|+..+.
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga  238 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGA  238 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            34568999999865 7788888888754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=87.33  E-value=0.81  Score=34.64  Aligned_cols=66  Identities=12%  Similarity=-0.078  Sum_probs=42.7

Q ss_pred             hhcCCCEEEEEecc--ccHHHHHHHhhCCCC--------Cc--------------------------cCCCCceeEEEEc
Q 032292           16 RLVNAKKTIEIGVF--TGYSLLLTALTIPED--------GQ--------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        16 ~~~~~~~vLeiG~g--~G~~t~~la~~~~~~--------~~--------------------------~~~~~~fD~v~~d   59 (143)
                      ...+.++||-+|+|  .|..++.+|+..+..        .+                          ......+|+||-.
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~  220 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDS  220 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEEC
Confidence            44567899999986  677888888765421        00                          0112369988855


Q ss_pred             CCccchHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....    ......+.|+++|.++.-
T Consensus       221 ~g~~----~~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          221 IGGP----DGNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             SCHH----HHHHHHHTEEEEEEEEEC
T ss_pred             CCCh----hHHHHHHHhcCCCEEEEE
Confidence            4422    123445899999999864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=87.31  E-value=0.91  Score=34.80  Aligned_cols=68  Identities=15%  Similarity=0.037  Sum_probs=46.3

Q ss_pred             HHhhcCCCEEEEEe--ccccHHHHHHHhhCCCCCc---------------------c------------CCCCceeEEEE
Q 032292           14 LLRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQ---------------------S------------ENEGSFDYAFV   58 (143)
Q Consensus        14 l~~~~~~~~vLeiG--~g~G~~t~~la~~~~~~~~---------------------~------------~~~~~fD~v~~   58 (143)
                      .+...+.++||-+|  .|.|..++.+|+..+..-.                     .            ...+.+|+||-
T Consensus       158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid  237 (362)
T 2c0c_A          158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYE  237 (362)
T ss_dssp             HTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEE
Confidence            34456778999999  5678888888887643100                     0            01235899885


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....    ..++.+.+.|+++|.++.-
T Consensus       238 ~~g~----~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          238 SVGG----AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             CSCT----HHHHHHHHHEEEEEEEEEC
T ss_pred             CCCH----HHHHHHHHHHhcCCEEEEE
Confidence            5432    4677888999999998763

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=87.25  E-value=3  Score=31.36  Aligned_cols=70  Identities=16%  Similarity=0.032  Sum_probs=45.1

Q ss_pred             HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------c-----------CCCCceeEEEE
Q 032292           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------S-----------ENEGSFDYAFV   58 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------~-----------~~~~~fD~v~~   58 (143)
                      +...+.++||-.|+|. |..++.+|++......                        .           .....+|+|+-
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d  235 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILE  235 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEE
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccc
Confidence            3445678999999864 5677778887753210                        0           01234677664


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ...   ....++.+.++|++||.+++-..
T Consensus       236 ~~G---~~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          236 TAG---VPQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             CSC---SHHHHHHHHHHCCTTCEEEECCC
T ss_pred             ccc---ccchhhhhhheecCCeEEEEEec
Confidence            432   24567788899999999986543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=87.20  E-value=0.81  Score=34.58  Aligned_cols=75  Identities=11%  Similarity=0.053  Sum_probs=50.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCC
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEG   51 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~   51 (143)
                      ..++..+.. .++..+||+=+|||..++.+.+.. +...                                    .....
T Consensus        81 ~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~  158 (283)
T 2oo3_A           81 LEYISVIKQ-INLNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPE  158 (283)
T ss_dssp             HHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTT
T ss_pred             HHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCC
Confidence            345555555 467889999999999999877632 1110                                    12235


Q ss_pred             ceeEEEEcCC---ccchHHHHHHHH--hcccCCeEEEE
Q 032292           52 SFDYAFVDAD---KDNYCNYHERLM--KLLKVGGIAVY   84 (143)
Q Consensus        52 ~fD~v~~d~~---~~~~~~~~~~~~--~~L~~gG~li~   84 (143)
                      +||+||+|-.   +..|...++.+.  ..+.++|++++
T Consensus       159 ~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          159 KRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             SCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            7999999973   245666666665  46778998864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.18  E-value=1.8  Score=32.79  Aligned_cols=67  Identities=13%  Similarity=0.143  Sum_probs=45.1

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCC--------Cc----------------cCCCCceeEEEEcCCccchHHHHH
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPED--------GQ----------------SENEGSFDYAFVDADKDNYCNYHE   70 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~--------~~----------------~~~~~~fD~v~~d~~~~~~~~~~~   70 (143)
                      ...+.++||-+|+|. |..++.+|+..+..        .+                ....+.+|+||-.....   ..++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~---~~~~  249 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTH---YDLK  249 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSC---CCHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcH---HHHH
Confidence            455678999999875 78888888886531        00                01112689888544332   1356


Q ss_pred             HHHhcccCCeEEEEe
Q 032292           71 RLMKLLKVGGIAVYD   85 (143)
Q Consensus        71 ~~~~~L~~gG~li~d   85 (143)
                      .+.+.|+++|.++.-
T Consensus       250 ~~~~~l~~~G~iv~~  264 (348)
T 3two_A          250 DYLKLLTYNGDLALV  264 (348)
T ss_dssp             HHHTTEEEEEEEEEC
T ss_pred             HHHHHHhcCCEEEEE
Confidence            778999999999864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=86.98  E-value=0.35  Score=37.12  Aligned_cols=67  Identities=12%  Similarity=-0.050  Sum_probs=44.9

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc---------------------c-C------------CCCceeEEEEcC
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ---------------------S-E------------NEGSFDYAFVDA   60 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~---------------------~-~------------~~~~fD~v~~d~   60 (143)
                      ...+.++||-+|+|. |..++.+|+..+..-.                     . .            ....+|+||-..
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~  265 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIA  265 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEET
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECC
Confidence            345678999999875 7788888887653100                     0 0            122689888554


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEec
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ..    ..++.+++.|+++|.++.-.
T Consensus       266 g~----~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          266 GG----AGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             TS----SCHHHHHHHEEEEEEEEEEC
T ss_pred             Ch----HHHHHHHHHhhcCCEEEEEe
Confidence            42    23567789999999988643

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=86.78  E-value=3.3  Score=31.37  Aligned_cols=68  Identities=10%  Similarity=0.011  Sum_probs=45.5

Q ss_pred             HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc---------------------c-C--C--------------CCceeE
Q 032292           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ---------------------S-E--N--------------EGSFDY   55 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~---------------------~-~--~--------------~~~fD~   55 (143)
                      +...+.++||-+|+|. |..++.+|+..+..-.                     . .  .              .+.+|+
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~  243 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV  243 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCE
Confidence            3455678999999875 7788888887653100                     0 1  0              135888


Q ss_pred             EEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ||-....   ...++.+++.|+++|.++.-
T Consensus       244 vid~~g~---~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          244 TIDCSGN---EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             EEECSCC---HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence            8754332   34567888999999999863

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=86.67  E-value=1.2  Score=34.71  Aligned_cols=75  Identities=11%  Similarity=-0.037  Sum_probs=50.9

Q ss_pred             HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC---CCc--------------------------cCCCCceeEEEEcCC
Q 032292           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQ--------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~---~~~--------------------------~~~~~~fD~v~~d~~   61 (143)
                      |..+.......+||.++.+.|..+.+++..-+.   +..                          ......||+|++.-.
T Consensus        30 l~~~~~~~~~~~~~~~~d~~gal~~~~~~~~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~lp  109 (375)
T 4dcm_A           30 LQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVP  109 (375)
T ss_dssp             HHTTTTCCCCSCEEEECCSSSHHHHHTGGGCCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTSCCCSSCSEEEEECC
T ss_pred             HHhhhhccCCCCEEEECCCCCHHHHhhccCCceEEEhHHHHHHHHHHHHHHcCCCccceEecccccccccCCCEEEEEcC
Confidence            333333334578999999999999999865221   111                          233568999998765


Q ss_pred             cc--chHHHHHHHHhcccCCeEEEEe
Q 032292           62 KD--NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ~~--~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +.  .....+..+.+.|++|+.+++-
T Consensus       110 k~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A          110 KTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             SCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            53  3345677888999999988754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=86.40  E-value=1.3  Score=34.01  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc-----------------------cC-------------CCCceeEEEE
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-----------------------SE-------------NEGSFDYAFV   58 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~-----------------------~~-------------~~~~fD~v~~   58 (143)
                      ...+.++||-+|+|. |..++.+|+..+..-.                       ..             ..+.+|+||-
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid  269 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE  269 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence            345678999999874 7888888887653100                       00             1125888874


Q ss_pred             cCCccchHHHHHHHHhcccCC-eEEEEec
Q 032292           59 DADKDNYCNYHERLMKLLKVG-GIAVYDN   86 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~g-G~li~d~   86 (143)
                      ...   ....++.+++.|++| |.++.-.
T Consensus       270 ~~g---~~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          270 CIG---NVSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CSC---CHHHHHHHHHTBCTTTCEEEECS
T ss_pred             CCC---CHHHHHHHHHHhhccCCEEEEEc
Confidence            433   245677889999997 9988643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=86.07  E-value=0.9  Score=34.54  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             CCceeEEEEcCCc--c---------------chHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADK--D---------------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~--~---------------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+||+|-.-  .               .+...++.+.++|+|||.+++.
T Consensus        31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            4689999998421  1               1234677788999999988763

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=85.80  E-value=0.85  Score=34.32  Aligned_cols=66  Identities=9%  Similarity=0.030  Sum_probs=44.0

Q ss_pred             hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc---------------------c--C-----------CCCceeEEEEc
Q 032292           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ---------------------S--E-----------NEGSFDYAFVD   59 (143)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~---------------------~--~-----------~~~~fD~v~~d   59 (143)
                      ...+.++||..|+  |.|..++.+++..+..-.                     .  .           ..+.+|+++-.
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~  221 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDN  221 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEEC
Confidence            3456789999997  677777777776542100                     0  0           01358988866


Q ss_pred             CCccchHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +..    ..++.+.+.|++||.++.-
T Consensus       222 ~g~----~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          222 VGG----EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             SCH----HHHHHHHTTEEEEEEEEEC
T ss_pred             CCh----HHHHHHHHHHhcCCEEEEE
Confidence            542    3477888999999998763

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=85.70  E-value=0.8  Score=34.79  Aligned_cols=66  Identities=11%  Similarity=0.082  Sum_probs=44.6

Q ss_pred             hhcCCCEEEEEec--cccHHHHHHHhhCCCCC--------c---------------c----------CCCCceeEEEEcC
Q 032292           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDG--------Q---------------S----------ENEGSFDYAFVDA   60 (143)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~--------~---------------~----------~~~~~fD~v~~d~   60 (143)
                      ...+.++||-+|+  |.|..++.+|+..+..-        +               .          .....+|+||-..
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~  235 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPI  235 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECC
Confidence            3456789999996  66888888888865310        0               0          0123699988654


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...    .++.+.+.|+++|.++.-
T Consensus       236 g~~----~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          236 GGP----AFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             C------CHHHHHHTEEEEEEEEEC
T ss_pred             chh----HHHHHHHhhcCCCEEEEE
Confidence            432    466788999999999863

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=85.66  E-value=2.6  Score=32.37  Aligned_cols=66  Identities=18%  Similarity=0.169  Sum_probs=44.4

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCC--------c-------------c--------CCCCceeEEEEcCCccch
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDG--------Q-------------S--------ENEGSFDYAFVDADKDNY   65 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~--------~-------------~--------~~~~~fD~v~~d~~~~~~   65 (143)
                      ...+.++||-+|+|. |..++.+|+..+..-        +             .        ...+.+|+||-...... 
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~-  269 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-  269 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH-
Confidence            445678999999975 788888888765310        0             0        11146899885443221 


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 032292           66 CNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~   84 (143)
                        .++.+.+.|+++|.++.
T Consensus       270 --~~~~~~~~l~~~G~iv~  286 (369)
T 1uuf_A          270 --NLDDFTTLLKRDGTMTL  286 (369)
T ss_dssp             --CHHHHHTTEEEEEEEEE
T ss_pred             --HHHHHHHHhccCCEEEE
Confidence              35577899999999876

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=85.33  E-value=1.6  Score=33.49  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=44.4

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------cC------------CCCceeEEEE
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------SE------------NEGSFDYAFV   58 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------~~------------~~~~fD~v~~   58 (143)
                      ...+.++||-+|+|. |..++.+|+..+....                        ..            ..+.+|+||-
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid  267 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE  267 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence            445678999999864 7788888887653100                        00            0125888874


Q ss_pred             cCCccchHHHHHHHHhcccCC-eEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVG-GIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~g-G~li~d   85 (143)
                      ....   ...++.+++.|+++ |.++.-
T Consensus       268 ~~g~---~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          268 CAGR---IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             CSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCC---HHHHHHHHHHHhcCCCEEEEE
Confidence            4322   34577888999999 998763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=84.97  E-value=2.4  Score=32.45  Aligned_cols=67  Identities=12%  Similarity=0.231  Sum_probs=44.5

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------cC------------CCCceeEEEE
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------SE------------NEGSFDYAFV   58 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------~~------------~~~~fD~v~~   58 (143)
                      ...+.++||-+|+|. |..++.+|+.......                        ..            ..+.+|+||-
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid  267 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFE  267 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEE
Confidence            345678999999875 7788888887653100                        00            0125888874


Q ss_pred             cCCccchHHHHHHHHhcccCC-eEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVG-GIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~g-G~li~d   85 (143)
                      ....   ...++.+++.|+++ |.++.-
T Consensus       268 ~~g~---~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          268 VIGR---LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             CSCC---HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCC---HHHHHHHHHHhhcCCcEEEEe
Confidence            4332   34577888999999 998763

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=84.75  E-value=1.7  Score=33.26  Aligned_cols=67  Identities=10%  Similarity=0.214  Sum_probs=44.5

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------cC--C----------CCceeEEEE
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------SE--N----------EGSFDYAFV   58 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------~~--~----------~~~fD~v~~   58 (143)
                      ...+.++||-+|+|. |..++.+|+..+....                        ..  .          .+.+|+||-
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid  268 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE  268 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEE
Confidence            344678999999864 7788888887653100                        00  0          125888874


Q ss_pred             cCCccchHHHHHHHHhcccCC-eEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVG-GIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~g-G~li~d   85 (143)
                      ....   ...++.+++.|+++ |.++.-
T Consensus       269 ~~g~---~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          269 CVGN---VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             CSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCC---HHHHHHHHHHhhcCCcEEEEE
Confidence            4332   34577888999999 998763

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=84.46  E-value=0.72  Score=34.66  Aligned_cols=65  Identities=11%  Similarity=-0.027  Sum_probs=43.1

Q ss_pred             hcCCCEEEEEe--ccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcC
Q 032292           17 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~   60 (143)
                      ..+.++||-+|  .|.|..++.+++..+..-.                                  ......+|+++-.+
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~  217 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSV  217 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECC
Confidence            34578999999  4667777777776432100                                  01123699988665


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .    ...++.+.+.|+++|.++.-
T Consensus       218 g----~~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          218 G----RDTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             C----GGGHHHHHHTEEEEEEEEEC
T ss_pred             c----hHHHHHHHHHhcCCCEEEEE
Confidence            4    23467788999999998763

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=84.38  E-value=1  Score=34.29  Aligned_cols=36  Identities=14%  Similarity=0.199  Sum_probs=26.2

Q ss_pred             CCceeEEEEcCC----------ccchH----HHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDAD----------KDNYC----NYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~----------~~~~~----~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+||+|-.          ...|.    ..+..+.++|+|||.+++.
T Consensus        56 ~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           56 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            468999999853          12343    4566778999999999774

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=83.22  E-value=2.5  Score=32.26  Aligned_cols=67  Identities=15%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------cC--C----------CCceeEEEE
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------SE--N----------EGSFDYAFV   58 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------~~--~----------~~~fD~v~~   58 (143)
                      ...+.++||-+|+|. |..++.+|+..+....                        ..  .          .+.+|+||-
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid  266 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE  266 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEE
Confidence            344678999999865 7778888887643100                        00  0          125888875


Q ss_pred             cCCccchHHHHHHHHhcccCC-eEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVG-GIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~g-G~li~d   85 (143)
                      ....   ...++.+++.|+++ |.++.-
T Consensus       267 ~~g~---~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          267 CIGN---VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             CSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCc---HHHHHHHHHhhccCCcEEEEE
Confidence            4332   34577889999999 998863

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=83.20  E-value=1.6  Score=32.96  Aligned_cols=66  Identities=14%  Similarity=0.038  Sum_probs=45.1

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------cC-----------CCCceeEEEEc
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------SE-----------NEGSFDYAFVD   59 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------~~-----------~~~~fD~v~~d   59 (143)
                      ...+.++||-+|+|. |..++.+|+.... .+                        ..           ....+|+||-.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~-~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~  246 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSA-ARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDF  246 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEES
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEEC
Confidence            455678999999875 7888888887632 11                        00           01268888744


Q ss_pred             CCccchHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...   ...++.+.+.|+++|.++.-
T Consensus       247 ~G~---~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          247 VGA---QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             SCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCC---HHHHHHHHHHHhcCCEEEEE
Confidence            332   34677889999999999864

>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}

Probab=83.02  E-value=1.2  Score=37.01  Aligned_cols=40  Identities=15%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             CCceeEEEEcCCc----cchHHH----------HHHHHhcccCCeEEEEeccCC
Q 032292           50 EGSFDYAFVDADK----DNYCNY----------HERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        50 ~~~fD~v~~d~~~----~~~~~~----------~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .++||+||++...    ++|...          -...+.+|+|||.+++-..-+
T Consensus       219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGy  272 (670)
T 4gua_A          219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGY  272 (670)
T ss_dssp             CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeec
Confidence            4699999999743    344432          234568999999998765443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=82.89  E-value=2.5  Score=32.38  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             hcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------cC--C----------CCceeEEEEc
Q 032292           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------SE--N----------EGSFDYAFVD   59 (143)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------~~--~----------~~~fD~v~~d   59 (143)
                      ..+.++||-+|+|. |..++.+|+.......                        ..  .          .+.+|+||-.
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~  272 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  272 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEEC
Confidence            44668999999874 7788888887653100                        00  0          1258888744


Q ss_pred             CCccchHHHHHHHHhcccCC-eEEEEe
Q 032292           60 ADKDNYCNYHERLMKLLKVG-GIAVYD   85 (143)
Q Consensus        60 ~~~~~~~~~~~~~~~~L~~g-G~li~d   85 (143)
                      ...   ...++.+++.|+++ |.++.-
T Consensus       273 ~G~---~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          273 AGT---AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCC---HHHHHHHHHHhhcCCCEEEEE
Confidence            322   34577889999999 998763

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=82.33  E-value=1.1  Score=33.82  Aligned_cols=65  Identities=9%  Similarity=0.043  Sum_probs=43.8

Q ss_pred             hcCCCEEEEEec--cccHHHHHHHhhCCCCCc---------------------c-------------CCCCceeEEEEcC
Q 032292           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ---------------------S-------------ENEGSFDYAFVDA   60 (143)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~---------------------~-------------~~~~~fD~v~~d~   60 (143)
                      ..+.++||-+|+  |.|..++.+++..+..-.                     .             .....+|++|-.+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~  222 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSI  222 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECC
Confidence            446789999994  677888888877542100                     0             0123689988655


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..    ..++.+.+.|+++|.++.-
T Consensus       223 g~----~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          223 GK----DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             CT----TTHHHHHHTEEEEEEEEEC
T ss_pred             cH----HHHHHHHHhhccCCEEEEE
Confidence            43    3467888999999998763

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=82.24  E-value=1.5  Score=32.73  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=24.5

Q ss_pred             CCceeEEEEcCCc---cc----------------h----HHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADK---DN----------------Y----CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~---~~----------------~----~~~~~~~~~~L~~gG~li~d   85 (143)
                      +++||+|++|-.-   .+                +    ...++++.++|+|||.+++.
T Consensus        38 ~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           38 EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            4789999998421   11                1    23456778999999988653

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=82.20  E-value=3.6  Score=31.44  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=41.9

Q ss_pred             CCCEEEEEe-c-cccHHHHHHHhhC-CCC-----Cc---------------------------cCCCCceeEEEEcCCcc
Q 032292           19 NAKKTIEIG-V-FTGYSLLLTALTI-PED-----GQ---------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        19 ~~~~vLeiG-~-g~G~~t~~la~~~-~~~-----~~---------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      +.++||-+| + +.|..++.+|+.+ ...     ..                           ....+.+|+||-...  
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g--  248 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH--  248 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCC--
Confidence            456899998 4 4588888898874 310     00                           111246898874432  


Q ss_pred             chHHHHHHHHhcccCCeEEEE
Q 032292           64 NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~   84 (143)
                       -...++.+.++|+++|.++.
T Consensus       249 -~~~~~~~~~~~l~~~G~iv~  268 (363)
T 4dvj_A          249 -TDKHAAEIADLIAPQGRFCL  268 (363)
T ss_dssp             -HHHHHHHHHHHSCTTCEEEE
T ss_pred             -chhhHHHHHHHhcCCCEEEE
Confidence             23467788899999999986

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=81.62  E-value=3.6  Score=31.09  Aligned_cols=64  Identities=11%  Similarity=-0.012  Sum_probs=43.5

Q ss_pred             CCCEEEEEeccc-cHHHHHHHhhCCC-CCc---------------------c-------------CCCCceeEEEEcCCc
Q 032292           19 NAKKTIEIGVFT-GYSLLLTALTIPE-DGQ---------------------S-------------ENEGSFDYAFVDADK   62 (143)
Q Consensus        19 ~~~~vLeiG~g~-G~~t~~la~~~~~-~~~---------------------~-------------~~~~~fD~v~~d~~~   62 (143)
                      +.++||-+|+|. |..++.+|+..+. .-.                     .             .....+|+||-....
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            568999999863 7788888887653 100                     0             011258998855432


Q ss_pred             cchHHHHHHHHhcccCCeEEEEe
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                         ...++.+.+.|+++|.++.-
T Consensus       247 ---~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          247 ---PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEEC
T ss_pred             ---HHHHHHHHHHHhcCCEEEEE
Confidence               34577888999999998763

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=80.96  E-value=1.5  Score=33.52  Aligned_cols=66  Identities=14%  Similarity=0.031  Sum_probs=43.6

Q ss_pred             hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc-----------------------c-----------CCCCceeEEEEc
Q 032292           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ-----------------------S-----------ENEGSFDYAFVD   59 (143)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~-----------------------~-----------~~~~~fD~v~~d   59 (143)
                      ...+.++||-.|+  |.|..++.+++..+..-.                       .           .....+|+|+-.
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~  246 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM  246 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEEC
Confidence            3456789999996  667778888876542100                       0           012368988755


Q ss_pred             CCccchHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +..    ..++.+.+.|+++|.++.-
T Consensus       247 ~G~----~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          247 LAN----VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             CHH----HHHHHHHHHEEEEEEEEEC
T ss_pred             CCh----HHHHHHHHhccCCCEEEEE
Confidence            432    3467788999999998763

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=80.80  E-value=11  Score=28.11  Aligned_cols=67  Identities=15%  Similarity=-0.077  Sum_probs=42.8

Q ss_pred             hhcCCCEEEEEecccc-HHHHHHHhhCCCCCc------------------------------------cCCCCceeEEEE
Q 032292           16 RLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQ------------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G-~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~~   58 (143)
                      ...+.++||-+|+|.+ ..++.+++.... .+                                    ......+|.++.
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g-~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~  238 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFG-AKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIV  238 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSC-CEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCC-CEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEE
Confidence            3456789999999864 455556665432 11                                    011235777776


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +...   ...++...+.|+++|.++.-.
T Consensus       239 ~~~~---~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          239 CAVA---RIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             CCSC---HHHHHHHHHTEEEEEEEEECC
T ss_pred             eccC---cchhheeheeecCCceEEEEe
Confidence            6532   446778889999999987643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=80.72  E-value=2.7  Score=31.90  Aligned_cols=67  Identities=10%  Similarity=0.033  Sum_probs=44.1

Q ss_pred             HhhcCC--CEEEEEec--cccHHHHHHHhhCCC-CCc-------------c---------------------CCCCceeE
Q 032292           15 LRLVNA--KKTIEIGV--FTGYSLLLTALTIPE-DGQ-------------S---------------------ENEGSFDY   55 (143)
Q Consensus        15 ~~~~~~--~~vLeiG~--g~G~~t~~la~~~~~-~~~-------------~---------------------~~~~~fD~   55 (143)
                      +...+.  ++||-.|+  |.|..++.+++..+. .-.             .                     ...+.+|+
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~  233 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDV  233 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCE
Confidence            345566  89999997  667777777776543 100             0                     00125788


Q ss_pred             EEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++-....    ..++.+.++|+++|.++.-
T Consensus       234 vi~~~G~----~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          234 YFDNVGG----NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             EEESCCH----HHHHHHHHTEEEEEEEEEC
T ss_pred             EEECCCH----HHHHHHHHHhccCcEEEEE
Confidence            7755542    5677889999999999763

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=80.55  E-value=1.5  Score=33.05  Aligned_cols=65  Identities=9%  Similarity=-0.010  Sum_probs=43.6

Q ss_pred             hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc----------------------c--C-----------CCCceeEEEE
Q 032292           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ----------------------S--E-----------NEGSFDYAFV   58 (143)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~----------------------~--~-----------~~~~fD~v~~   58 (143)
                      ...+.++||-+|+  |.|..++.+++..+..-.                      .  .           ..+.+|+|+-
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~  231 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFE  231 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence            3456789999997  677888888876542100                      0  0           0135888875


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEE
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ....    ..++.+.+.|++||.++.
T Consensus       232 ~~g~----~~~~~~~~~l~~~G~~v~  253 (345)
T 2j3h_A          232 NVGG----KMLDAVLVNMNMHGRIAV  253 (345)
T ss_dssp             SSCH----HHHHHHHTTEEEEEEEEE
T ss_pred             CCCH----HHHHHHHHHHhcCCEEEE
Confidence            5432    367788899999999976

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=80.26  E-value=1.9  Score=31.99  Aligned_cols=63  Identities=21%  Similarity=0.209  Sum_probs=43.7

Q ss_pred             hcCCCEEEEEec--cccHHHHHHHhhCCCCC--------c-------------cCCC--------CceeEEEEcCCccch
Q 032292           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDG--------Q-------------SENE--------GSFDYAFVDADKDNY   65 (143)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~t~~la~~~~~~~--------~-------------~~~~--------~~fD~v~~d~~~~~~   65 (143)
                      ..+.++||-+|+  |.|..++.+|+..+..-        +             ...+        +.+|+||- ...   
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~---  198 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG---  198 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC---
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH---
Confidence            456789999997  66888888888765310        0             0011        35898886 543   


Q ss_pred             HHHHHHHHhcccCCeEEEE
Q 032292           66 CNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~   84 (143)
                       ..++.+.+.|+++|.++.
T Consensus       199 -~~~~~~~~~l~~~G~~v~  216 (302)
T 1iz0_A          199 -KEVEESLGLLAHGGRLVY  216 (302)
T ss_dssp             -TTHHHHHTTEEEEEEEEE
T ss_pred             -HHHHHHHHhhccCCEEEE
Confidence             256788899999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	1e-30
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	1e-25
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	2e-16
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	3e-05

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  107 bits (269), Expect = 1e-30
 Identities = 79/179 (44%), Positives = 105/179 (58%), Gaps = 44/179 (24%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+                     
Sbjct: 48  GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA 107

Query: 47  -----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 83
                                   +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  
Sbjct: 108 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 167

Query: 84  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 168 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 226

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 1e-25
 Identities = 56/178 (31%), Positives = 80/178 (44%), Gaps = 49/178 (27%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
            QL+A L RL+ AKK +++G FTGYS L  AL +P DG+                     
Sbjct: 48  AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA 107

Query: 47  ----------------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 84
                                 +   G+FD A VDADK+N   Y+ER ++LL+ GGI   
Sbjct: 108 EAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAV 167

Query: 85  DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 142
              LW G V  P +           + + +LN  +  D RV +S + LGDG+T+  +I
Sbjct: 168 LRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 219

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.6 bits (172), Expect = 2e-16
 Identities = 27/176 (15%), Positives = 50/176 (28%), Gaps = 58/176 (32%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------- 46
           GQ+M  ++R  +    +E+G + GYS +  A  +    +                     
Sbjct: 45  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 104

Query: 47  ----------------------SENEGSFDYAFVDADKDNYCNYHERL--MKLLKVGGIA 82
                                   +  + D  F+D  KD Y      L    LL+ G + 
Sbjct: 105 GLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVL 164

Query: 83  VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 138
           + DN +  GT                   +   +          L ++ + DG+  
Sbjct: 165 LADNVIVPGTPDF-------------LAYVRGSSSFECTHYSSYLEYMKVVDGLEK 207

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 40/122 (32%)

Query: 10  LMAMLLRLVNAKKTIEIGVFTGYSLLLTA------------------------------- 38
           +   +L  +  +  +E+GV+ G SL                                   
Sbjct: 71  VYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMEN 130

Query: 39  -------LTIPEDGQSENEGSFDYAFVDADKDNYCNYHER-LMKLLKVGG-IAVYDNTLW 89
                   +     +   E +    F+D    N  N  +  +  LL+ G    + D   +
Sbjct: 131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPY 190

Query: 90  GG 91
             
Sbjct: 191 WY 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.94
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.42
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.39
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.38
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.38
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.35
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.34
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.33
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.33
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.31
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.29
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.25
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.24
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.24
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.24
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.22
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.21
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.2
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.17
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.16
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.15
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.12
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.11
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.1
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.1
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.09
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.09
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.07
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.05
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.04
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.02
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.02
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.01
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.0
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.96
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.95
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.95
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.93
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.92
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.86
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.83
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.82
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.8
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.8
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.78
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.77
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.73
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.71
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.61
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.6
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.59
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.59
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.5
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.5
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.46
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.46
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.45
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.42
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.4
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.39
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.38
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.31
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.27
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.18
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.17
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.14
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.14
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.11
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.1
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.04
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.01
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.01
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.97
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.94
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.92
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.92
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.92
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.87
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.85
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.83
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.76
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.73
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.73
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.57
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.32
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.13
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.12
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.06
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.88
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.82
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.59
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	96.56
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.43
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.02
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	95.92
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.86
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.61
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.46
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	95.37
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.92
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.91
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.89
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.74
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.54
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	94.13
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.65
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.91
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.81
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.66
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.37
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.46
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.28
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	90.74
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	90.5
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	89.11
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.05
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	87.59
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	87.37
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	86.89
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	85.91
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.36
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	83.41
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	83.37
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	81.67
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	80.38

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.7e-37  Score=229.75  Aligned_cols=142  Identities=57%  Similarity=0.982  Sum_probs=125.9

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |+++|++|+||+.|++..+|++||||||++||||+|||++++++|+                                  
T Consensus        41 m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          41 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            6799999999999999999999999999999999999999987665                                  


Q ss_pred             ----c------CCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCC-cccchHHHHHHH
Q 032292           47 ----S------ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAILDL  115 (143)
Q Consensus        47 ----~------~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~f  115 (143)
                          +      ...++||+||+|+++.+|..+++.+.++|+|||+|++||++|+|.+.++....... .+. ...++++|
T Consensus       121 ~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~-~~~~i~~~  199 (227)
T d1susa1         121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLEL  199 (227)
T ss_dssp             HHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHH-HHHHHHHH
Confidence                1      12568999999999999999999999999999999999999999999886543322 222 45579999


Q ss_pred             HHHhhcCCCeeEEEeecCCeeEEEEEcC
Q 032292          116 NRSLADDPRVQLSHVALGDGITICRRIF  143 (143)
Q Consensus       116 ~~~l~~~~~~~~~~lp~~~Gl~~~~k~~  143 (143)
                      ++.+.+||+|+++++|++||+.+++|.+
T Consensus       200 n~~i~~d~r~~~~llPigDGl~i~~K~~  227 (227)
T d1susa1         200 NKALAVDPRIEICMLPVGDGITICRRIK  227 (227)
T ss_dssp             HHHHHHCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHhcCCCEEEEEeecCCeeEEEEECC
Confidence            9999999999999999999999999864

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=223.80  Aligned_cols=136  Identities=41%  Similarity=0.692  Sum_probs=124.1

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |+++|++|+||+.|++..+|++|||||||+||||+|||++++++++                                  
T Consensus        41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            6799999999999999999999999999999999999999987665                                  


Q ss_pred             ---------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 032292           47 ---------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  117 (143)
Q Consensus        47 ---------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~  117 (143)
                               ....++||+||+|+++..|..+++.+.++|+|||+|++||++|.|.+.+++...+      ...++++|++
T Consensus       121 ~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~------~~~~ir~~~~  194 (219)
T d2avda1         121 LETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDV------AAECVRNLNE  194 (219)
T ss_dssp             HHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCH------HHHHHHHHHH
T ss_pred             hhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCH------HHHHHHHHHH
Confidence                     1236789999999999999999999999999999999999999999998753211      6678999999


Q ss_pred             HhhcCCCeeEEEeecCCeeEEEEEc
Q 032292          118 SLADDPRVQLSHVALGDGITICRRI  142 (143)
Q Consensus       118 ~l~~~~~~~~~~lp~~~Gl~~~~k~  142 (143)
                      .|.++|+|+++++|++||+++++|.
T Consensus       195 ~i~~d~r~~~~llPigdGl~ia~Kl  219 (219)
T d2avda1         195 RIRRDVRVYISLLPLGDGLTLAFKI  219 (219)
T ss_dssp             HHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHhCCCEEEEEeecCCeeEEEEeC
Confidence            9999999999999999999999983

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.1e-26  Score=168.41  Aligned_cols=122  Identities=23%  Similarity=0.327  Sum_probs=103.8

Q ss_pred             CCcChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------
Q 032292            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------   46 (143)
Q Consensus         1 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------   46 (143)
                      |+++|++|++|+.+++..+|++|||||||+|+||++||++++++++                                  
T Consensus        38 m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~  117 (214)
T d2cl5a1          38 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS  117 (214)
T ss_dssp             CSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc
Confidence            7899999999999999999999999999999999999999987665                                  


Q ss_pred             ---------cCCCCceeEEEEcCCccchHHH--HHHHHhcccCCeEEEEeccCCCccccCCCCCCCCCcccchHHHHHHH
Q 032292           47 ---------SENEGSFDYAFVDADKDNYCNY--HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL  115 (143)
Q Consensus        47 ---------~~~~~~fD~v~~d~~~~~~~~~--~~~~~~~L~~gG~li~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f  115 (143)
                               ....++||+||+|+++..|...  +.+..++|+|||+|++||++|+|.                    .+|
T Consensus       118 ~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~--------------------~~~  177 (214)
T d2cl5a1         118 QDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT--------------------PDF  177 (214)
T ss_dssp             HHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCC--------------------HHH
T ss_pred             cccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCCC--------------------hHH
Confidence                     1234689999999999888764  556678999999999999999862                    456


Q ss_pred             HHHhhcCCCeeEEE-------eecCCeeEEEEEc
Q 032292          116 NRSLADDPRVQLSH-------VALGDGITICRRI  142 (143)
Q Consensus       116 ~~~l~~~~~~~~~~-------lp~~~Gl~~~~k~  142 (143)
                      ++++++.+++.+..       +|++||+.+++.+
T Consensus       178 ~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         178 LAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             HHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             HHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence            67778888887664       5789999998864

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=1.7e-13  Score=102.00  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +-|....++..++.+.++.+|||+|||+|+.|++||+.+.++|+                                    
T Consensus        80 iypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~  159 (264)
T d1i9ga_          80 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  159 (264)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             cchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence            66888899999999999999999999999999999999877665                                    


Q ss_pred             ---cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 ---SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ---~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                         ...+++||.||+|.  .+.+.+++.+.+.|||||.+++-
T Consensus       160 ~~~~~~~~~fDaV~ldl--p~P~~~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         160 ADSELPDGSVDRAVLDM--LAPWEVLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             GGCCCCTTCEEEEEEES--SCGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ccccccCCCcceEEEec--CCHHHHHHHHHhccCCCCEEEEE
Confidence               23478899999985  45678899999999999999863

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=3.1e-13  Score=98.69  Aligned_cols=88  Identities=19%  Similarity=0.232  Sum_probs=69.5

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cC
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SE   48 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~   48 (143)
                      .+++..+.|...+.+.+.++|||||||+|..+..+++..+....                                  ..
T Consensus        17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~   96 (245)
T d1nkva_          17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   96 (245)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc
Confidence            45677777888888888899999999999999999987653111                                  13


Q ss_pred             CCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           49 NEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        49 ~~~~fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      .+++||+|++...   ..++...++++.+.|||||.+++.+..+.
T Consensus        97 ~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~  141 (245)
T d1nkva_          97 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR  141 (245)
T ss_dssp             CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEET
T ss_pred             ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecccc
Confidence            4678999997643   24678899999999999999999876554

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=2.8e-13  Score=97.76  Aligned_cols=77  Identities=23%  Similarity=0.291  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SE   48 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~   48 (143)
                      |.....+..++.+.+..+|||||||+|++|..||+.+++.++                                    ..
T Consensus        61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~  140 (213)
T d1dl5a1          61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP  140 (213)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred             chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence            444444445556788899999999999999999998876543                                    12


Q ss_pred             CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        49 ~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ..++||.|++.+...+.++   .+.+.|+|||.+++
T Consensus       141 ~~~~fD~I~~~~~~~~~p~---~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         141 EFSPYDVIFVTVGVDEVPE---TWFTQLKEGGRVIV  173 (213)
T ss_dssp             GGCCEEEEEECSBBSCCCH---HHHHHEEEEEEEEE
T ss_pred             cccchhhhhhhccHHHhHH---HHHHhcCCCcEEEE
Confidence            3468999999987665543   56788999999987

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.38  E-value=5.7e-13  Score=96.54  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------------cCCCC
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------------SENEG   51 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------------~~~~~   51 (143)
                      +....+|...+.+++..+|||||||+|..+..+++.... .|.                                +..++
T Consensus         2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             chHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence            356678888889999999999999999999999987532 000                                34578


Q ss_pred             ceeEEEEcCCc---cchHHHHHHHHhcccCCeEEEEec
Q 032292           52 SFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        52 ~fD~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +||+|++....   .+...+++++.++|+|||++++.+
T Consensus        82 ~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          82 SFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            99999987543   467789999999999999988753

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.2e-13  Score=98.25  Aligned_cols=76  Identities=22%  Similarity=0.322  Sum_probs=58.4

Q ss_pred             HHHHHHHHHH-hhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------
Q 032292            6 IHGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------   46 (143)
Q Consensus         6 ~~~~~l~~l~-~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------   46 (143)
                      ..+.+|..|. ...+..+|||||||+||.|..||+.+.+.++                                      
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            4466666665 3567789999999999999999998765544                                      


Q ss_pred             ---cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           47 ---SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 ---~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                         ....++||.|++++...+.+   +.+.+.|+|||++++
T Consensus       142 ~~~~~~~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVGAAAPVVP---QALIDQLKPGGRLIL  179 (224)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEE
T ss_pred             ccccchhhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEE
Confidence               12246899999998765544   356789999999987

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=1.3e-12  Score=97.20  Aligned_cols=81  Identities=23%  Similarity=0.335  Sum_probs=69.5

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +.|....++..++.+.+..+|||+|||+|+.|++||+.+.+.|+                                    
T Consensus        87 iypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~  166 (266)
T d1o54a_          87 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  166 (266)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             cchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc
Confidence            56788889999999999999999999999999999999876665                                    


Q ss_pred             cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ......||.||+|.  .+.+.+++.+.++|||||.+++.
T Consensus       167 ~~~~~~~D~V~~d~--p~p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         167 GFDEKDVDALFLDV--PDPWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             CCSCCSEEEEEECC--SCGGGTHHHHHHHEEEEEEEEEE
T ss_pred             cccccceeeeEecC--CCHHHHHHHHHhhcCCCCEEEEE
Confidence            23457899999985  45678899999999999999863

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.33  E-value=4.2e-13  Score=99.19  Aligned_cols=81  Identities=17%  Similarity=0.262  Sum_probs=57.8

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +-|+...++...+.+.+..+|||+|||+|+.|++||+++.+.++                                    
T Consensus        69 iypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~  148 (250)
T d1yb2a1          69 ISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD  148 (250)
T ss_dssp             ------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred             cCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence            34555566667777888999999999999999999998766554                                    


Q ss_pred             cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           47 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...+++||.||+|..  +...+++.+.+.|||||++++.
T Consensus       149 ~~~~~~fD~V~ld~p--~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         149 FISDQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             CCCSCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEE
T ss_pred             ccccceeeeeeecCC--chHHHHHHHHHhcCCCceEEEE
Confidence            134678999999853  4567889999999999999873

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.33  E-value=6.2e-12  Score=88.45  Aligned_cols=83  Identities=17%  Similarity=0.062  Sum_probs=67.0

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SE   48 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~   48 (143)
                      ..+...++...+...+..+|||||||+|+.++++|+..+. ..                                   ..
T Consensus        18 ~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~-V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC   96 (186)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceE-EEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc
Confidence            4456666777778888999999999999999999986432 00                                   23


Q ss_pred             CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           49 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        49 ~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ..+.||.||++....+....++.+.++|+|||.+++...
T Consensus        97 ~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          97 KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence            457899999999888888899999999999999988654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.31  E-value=1.8e-12  Score=93.12  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------------cCCCCcee
Q 032292            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------------SENEGSFD   54 (143)
Q Consensus         8 ~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------------~~~~~~fD   54 (143)
                      ++++.. +.+.+.++|||||||+|..+..+++.... .|.                                +...++||
T Consensus         5 ~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           5 AKLMQI-AALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHHh-cCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            444444 56778899999999999999999987532 000                                34578999


Q ss_pred             EEEEcCCc---cchHHHHHHHHhcccCCeEEEEecc
Q 032292           55 YAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        55 ~v~~d~~~---~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +|++....   .++...++++.++|+|||++++.+.
T Consensus        84 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          84 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99987542   4677889999999999999987543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.9e-12  Score=98.88  Aligned_cols=80  Identities=16%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------   46 (143)
                      +-|....++..++.+.++.+|||+|||+|+.|++||+++.++|+                                    
T Consensus        82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n  161 (324)
T d2b25a1          82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  161 (324)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            56777888888889999999999999999999999999876665                                    


Q ss_pred             -------------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           47 -------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 -------------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                                   .....+||.||+|.  .+...+++.+.+.|||||++++
T Consensus       162 v~~~~~di~~~~~~~~~~~fD~V~LD~--p~P~~~l~~~~~~LKpGG~lv~  210 (324)
T d2b25a1         162 VDFIHKDISGATEDIKSLTFDAVALDM--LNPHVTLPVFYPHLKHGGVCAV  210 (324)
T ss_dssp             EEEEESCTTCCC-------EEEEEECS--SSTTTTHHHHGGGEEEEEEEEE
T ss_pred             eeEEecchhhcccccCCCCcceEeecC--cCHHHHHHHHHHhccCCCEEEE
Confidence                         01235799999985  3455688999999999999986

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.25  E-value=2.8e-11  Score=88.34  Aligned_cols=85  Identities=20%  Similarity=0.217  Sum_probs=64.9

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC---CCCCc----------------------------------
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQ----------------------------------   46 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~---~~~~~----------------------------------   46 (143)
                      .|....+++.|+...+|++|||||++.|.|++++|..+   ...++                                  
T Consensus        65 ~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~  144 (232)
T d2bm8a1          65 DPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTF  144 (232)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGG
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHH
Confidence            47778888999998899999999999999999998654   22232                                  


Q ss_pred             -cCCCCceeEEEEcCCccchHHHHH-HHHhcccCCeEEEEeccC
Q 032292           47 -SENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        47 -~~~~~~fD~v~~d~~~~~~~~~~~-~~~~~L~~gG~li~d~~~   88 (143)
                       ......+|+||+|++|.......+ ...++|++||++|++|+.
T Consensus       145 ~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         145 EHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             GGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             HHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence             122456899999998765433332 245899999999999875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4e-12  Score=92.16  Aligned_cols=74  Identities=19%  Similarity=0.227  Sum_probs=55.8

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCCcc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      ++.+|||||||+|+++.++++..+....                                   ....++||.|+.|....
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~  132 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  132 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence            5679999999999999999986542111                                   34568999999886432


Q ss_pred             --------chHHHHHHHHhcccCCeEEEEeccCCCcc
Q 032292           64 --------NYCNYHERLMKLLKVGGIAVYDNTLWGGT   92 (143)
Q Consensus        64 --------~~~~~~~~~~~~L~~gG~li~d~~~~~g~   92 (143)
                              +...+++++.++|||||++++.+....+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~  169 (229)
T d1zx0a1         133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE  169 (229)
T ss_dssp             BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHH
T ss_pred             ccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcch
Confidence                    23457888999999999999876654443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=7.4e-12  Score=94.21  Aligned_cols=82  Identities=13%  Similarity=0.101  Sum_probs=62.9

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEE
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYA   56 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v   56 (143)
                      +.+...+.+.+..+|||||||.|..++++|+..+....                                +..+++||.|
T Consensus        51 ~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i  130 (291)
T d1kpia_          51 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRI  130 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEE
T ss_pred             HHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceE
Confidence            34444445678899999999999999999988664211                                3457899999


Q ss_pred             EEcCCc------------cchHHHHHHHHhcccCCeEEEEeccCCC
Q 032292           57 FVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTLWG   90 (143)
Q Consensus        57 ~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d~~~~~   90 (143)
                      ++-.-.            .+|..+|+.+.++|+|||.++++.+...
T Consensus       131 ~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~  176 (291)
T d1kpia_         131 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  176 (291)
T ss_dssp             EEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred             eechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence            975421            3478999999999999999999877643

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=2.2e-12  Score=93.79  Aligned_cols=76  Identities=18%  Similarity=0.270  Sum_probs=58.1

Q ss_pred             HHHHHHHHHH-hhcCCCEEEEEeccccHHHHHHHhhCCCCC-----c---------------------------------
Q 032292            6 IHGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDG-----Q---------------------------------   46 (143)
Q Consensus         6 ~~~~~l~~l~-~~~~~~~vLeiG~g~G~~t~~la~~~~~~~-----~---------------------------------   46 (143)
                      ..+.+|..|. .+.+..+|||||||+||.|..+++.+.+.+     +                                 
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            4567777764 466789999999999999999998754322     1                                 


Q ss_pred             --------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           47 --------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 --------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                              ....++||.|++++.....+.   .+.+.|++||++++
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~---~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVGAAAPDTPT---ELINQLASGGRLIV  188 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCBSSCCH---HHHHTEEEEEEEEE
T ss_pred             EecccccccccccceeeEEEEeechhchH---HHHHhcCCCcEEEE
Confidence                    123568999999998765554   45789999999987

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.22  E-value=6e-12  Score=93.50  Aligned_cols=73  Identities=12%  Similarity=0.196  Sum_probs=56.9

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEEcCC
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~d~~   61 (143)
                      +.+..+|||||||+|..+..||+..+....                                   +..+++||+|++...
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  144 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA  144 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence            456789999999999999999987542111                                   345689999998643


Q ss_pred             ---ccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           62 ---KDNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        62 ---~~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                         ..+...+++++.++|+|||.+++.+...
T Consensus       145 l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         145 FLHSPDKLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             hhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence               2467789999999999999998876543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.21  E-value=8.3e-12  Score=93.08  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=58.5

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCC
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ...+|.+|||||||+|..+..+++..+++++                                  ....++||+|++...
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~  103 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAF  103 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehh
Confidence            3468999999999999999999998775332                                  122568999998864


Q ss_pred             c---cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           62 K---DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        62 ~---~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .   .+....++++.+.|||||.+++.+..|
T Consensus       104 l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1         104 LLHMTTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             GGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             hhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            3   466788999999999999988766543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.20  E-value=7.7e-12  Score=90.91  Aligned_cols=78  Identities=28%  Similarity=0.287  Sum_probs=57.1

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC-Cc------------------------------cCCCCc
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-GQ------------------------------SENEGS   52 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~-~~------------------------------~~~~~~   52 (143)
                      .|.....+...+.+.+..+|||||||+||.|..||+....- +.                              ....++
T Consensus        55 ~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~p  134 (224)
T d1vbfa_          55 ALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP  134 (224)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred             hhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhh
Confidence            34444444555678889999999999999999999875420 00                              122578


Q ss_pred             eeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        53 fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ||.|++.+.....+.   .+.+.|+|||+|++
T Consensus       135 fD~Iiv~~a~~~ip~---~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         135 YDRVVVWATAPTLLC---KPYEQLKEGGIMIL  163 (224)
T ss_dssp             EEEEEESSBBSSCCH---HHHHTEEEEEEEEE
T ss_pred             HHHHHhhcchhhhhH---HHHHhcCCCCEEEE
Confidence            999999987655443   55789999999987

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=1.8e-11  Score=91.47  Aligned_cols=79  Identities=13%  Similarity=0.180  Sum_probs=60.0

Q ss_pred             HHHHHH---hhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCcee
Q 032292           10 LMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFD   54 (143)
Q Consensus        10 ~l~~l~---~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD   54 (143)
                      -+..++   .+.++.+|||||||+|..+.++++..+....                                ...+++||
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD  119 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD  119 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchh
Confidence            344454   3456789999999999999999987653211                                23568899


Q ss_pred             EEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           55 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        55 ~v~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      .|++-.-     ..++..+|+++.++|||||.++++.+.
T Consensus       120 ~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         120 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence            9987542     246688999999999999999987654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=2e-11  Score=87.81  Aligned_cols=69  Identities=17%  Similarity=0.120  Sum_probs=53.4

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------cCCCCceeEEEEcCC----ccchH
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------SENEGSFDYAFVDAD----KDNYC   66 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------~~~~~~fD~v~~d~~----~~~~~   66 (143)
                      .++.+|||+|||+|..+.++++.... .|.                          +..+++||+|++...    ..+..
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~  120 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKD  120 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHH
T ss_pred             CCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhHH
Confidence            35789999999999999999986321 000                          345689999997543    24667


Q ss_pred             HHHHHHHhcccCCeEEEEec
Q 032292           67 NYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        67 ~~~~~~~~~L~~gG~li~d~   86 (143)
                      ..++++.++|+|||+++++.
T Consensus       121 ~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         121 KAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHhhcCcCcEEEEEE
Confidence            78999999999999999864

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.15  E-value=2.1e-11  Score=88.04  Aligned_cols=78  Identities=19%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SEN   49 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~   49 (143)
                      .|..-..+..++...+..+|||||||+||.|..||+.++....                                  ...
T Consensus        63 ~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~  142 (215)
T d1jg1a_          63 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP  142 (215)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             hhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence            4554334444556888899999999999999999987652111                                  233


Q ss_pred             CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           50 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        50 ~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .++||.|++.+.....+.   .+.+.|++||++++
T Consensus       143 ~~pfD~Iiv~~a~~~ip~---~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         143 KAPYDVIIVTAGAPKIPE---PLIEQLKIGGKLII  174 (215)
T ss_dssp             GCCEEEEEECSBBSSCCH---HHHHTEEEEEEEEE
T ss_pred             cCcceeEEeecccccCCH---HHHHhcCCCCEEEE
Confidence            688999999987765544   35678999999987

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=6.3e-11  Score=87.46  Aligned_cols=82  Identities=17%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCc
Q 032292            6 IHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGS   52 (143)
Q Consensus         6 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~   52 (143)
                      .+.-.|..+... .+.++|||+|||+|..++.+++.... ..                                ....++
T Consensus       106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~-V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~  184 (254)
T d2nxca1         106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGP  184 (254)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCE-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCC
T ss_pred             hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCE-EEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccc
Confidence            344455555554 46789999999999999988765321 11                                233578


Q ss_pred             eeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           53 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        53 fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ||+|+++.........++.+.++|||||++++.+++
T Consensus       185 fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         185 FDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            999999876555667788899999999999987664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=1.3e-10  Score=82.44  Aligned_cols=70  Identities=19%  Similarity=0.121  Sum_probs=52.5

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc-------------------------------cCCCCceeEEEEcCCcc--
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-------------------------------SENEGSFDYAFVDADKD--   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-------------------------------~~~~~~fD~v~~d~~~~--   63 (143)
                      .+..+|||||||+|..+..+++.... .|.                               +..+++||+|++.....  
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~  115 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  115 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence            45679999999999999999975321 000                               23468999999875432  


Q ss_pred             ---chHHHHHHHHhcccCCeEEEEecc
Q 032292           64 ---NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ---~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                         +...+++++.++|+|||.++++..
T Consensus       116 ~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         116 EPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence               344679999999999999988644

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.10  E-value=3.2e-10  Score=81.30  Aligned_cols=71  Identities=10%  Similarity=0.159  Sum_probs=53.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC-CCc-----------------------------------cCCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------------------------------~~~~~~fD~v~~d~~   61 (143)
                      .+..+|||+|||+|..+..+++.... +.+                                   ....+++|+|++...
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~  117 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  117 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence            45679999999999999999987532 222                                   233467899887643


Q ss_pred             c-----cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           62 K-----DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        62 ~-----~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      .     .+....++++.++|+|||.+++.+..
T Consensus       118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            2     35568899999999999999987544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=1e-10  Score=84.69  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=55.0

Q ss_pred             HHHHHHHh---hcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCcee
Q 032292            9 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSFD   54 (143)
Q Consensus         9 ~~l~~l~~---~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~fD   54 (143)
                      .++..+..   ..++++|||||||+|..+..|++.... .|.                              ...+++||
T Consensus        28 ~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD  107 (251)
T d1wzna1          28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD  107 (251)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccc
Confidence            34444442   235679999999999999999886431 010                              12357899


Q ss_pred             EEEEcCCc------cchHHHHHHHHhcccCCeEEEEec
Q 032292           55 YAFVDADK------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        55 ~v~~d~~~------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      +|++-...      .+....++.+.++|+|||+++++-
T Consensus       108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            99986432      234568999999999999999874

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=7.8e-11  Score=88.28  Aligned_cols=80  Identities=13%  Similarity=0.148  Sum_probs=61.0

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------cCCCCceeEE
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------SENEGSFDYA   56 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------~~~~~~fD~v   56 (143)
                      +.+...+.+.+..+|||||||.|..++++|+..+....                                ...+++||.|
T Consensus        52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i  131 (285)
T d1kpga_          52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRI  131 (285)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEE
T ss_pred             HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccce
Confidence            33444445667899999999999999999998653111                                2446899998


Q ss_pred             EEcCC-----ccchHHHHHHHHhcccCCeEEEEeccC
Q 032292           57 FVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        57 ~~d~~-----~~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ++-..     ..++..+++++.++|+|||.++++.+.
T Consensus       132 ~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         132 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             eeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            86432     246788999999999999999988765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.09  E-value=5e-10  Score=78.87  Aligned_cols=75  Identities=11%  Similarity=0.091  Sum_probs=55.5

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCce
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSF   53 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~f   53 (143)
                      ++|...+...+.++|||+|||+|+.++.+|+..+. ..                                   ...+++|
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f  120 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVKS-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY  120 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSE-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccc-cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence            44444455667899999999999999999987653 11                                   1235789


Q ss_pred             eEEEEcCCcc---c-hHHHHHHHHhcccCCeEEEE
Q 032292           54 DYAFVDADKD---N-YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        54 D~v~~d~~~~---~-~~~~~~~~~~~L~~gG~li~   84 (143)
                      |+|+++....   + ...+++.+.++|+|||.+++
T Consensus       121 D~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence            9999975421   1 24568888999999998865

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.07  E-value=1.6e-10  Score=81.39  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCC-Cc-------------------------------cCCCCceeEE
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPED-GQ-------------------------------SENEGSFDYA   56 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~-~~-------------------------------~~~~~~fD~v   56 (143)
                      .++.. +...++.+|||||||+|..+.+|++....- +.                               ...+++||+|
T Consensus        21 ~~~~~-~~~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I   99 (198)
T d2i6ga1          21 DVLAA-AKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFI   99 (198)
T ss_dssp             HHHHH-HTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEE
T ss_pred             HHHHH-cccCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEE
Confidence            34443 344578899999999999999999874320 00                               2346889999


Q ss_pred             EEcCCc-----cchHHHHHHHHhcccCCeEEEEec
Q 032292           57 FVDADK-----DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        57 ~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ++....     ......++++.++|+|||++++..
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            986532     235578999999999999998753

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=9.1e-11  Score=82.94  Aligned_cols=78  Identities=22%  Similarity=0.247  Sum_probs=56.8

Q ss_pred             HHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------cCCCCceeEEEEcCCc---cchH
Q 032292           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------SENEGSFDYAFVDADK---DNYC   66 (143)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------~~~~~~fD~v~~d~~~---~~~~   66 (143)
                      ..+....+..+|||||||+|..+..+++...-+-.                      +..+++||+|++....   .+..
T Consensus        29 ~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~  108 (208)
T d1vlma_          29 QAVKCLLPEGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE  108 (208)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH
T ss_pred             HHHHhhCCCCeEEEECCCCcccccccceEEEEeCChhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            34444556678999999999999888665321100                      3456899999987532   4567


Q ss_pred             HHHHHHHhcccCCeEEEEeccCC
Q 032292           67 NYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        67 ~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ..++++.++|+|||.+++.....
T Consensus       109 ~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_         109 RALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cchhhhhhcCCCCceEEEEecCC
Confidence            78999999999999999876543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.04  E-value=1.9e-10  Score=83.34  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------cCCCCce
Q 032292            7 HGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------SENEGSF   53 (143)
Q Consensus         7 ~~~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------~~~~~~f   53 (143)
                      ...++..++..  .++++|||||||+|..+..|++...+ .|.                              ....++|
T Consensus        23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~f  102 (246)
T d1y8ca_          23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKF  102 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCE
T ss_pred             HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccc
Confidence            44556555543  34689999999999999999987532 010                              1246789


Q ss_pred             eEEEEcCCc-------cchHHHHHHHHhcccCCeEEEEe
Q 032292           54 DYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        54 D~v~~d~~~-------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |+|++-...       .+...+++.+.++|+|||.++++
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            999975321       13345789999999999999975

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=4.6e-10  Score=83.52  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc---------------------------------------
Q 032292            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ---------------------------------------   46 (143)
Q Consensus         7 ~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~---------------------------------------   46 (143)
                      ..+++..+....+.++|||+|||+|..+..||+..-. .|.                                       
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  123 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence            3466666666677889999999999999999987321 010                                       


Q ss_pred             cCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEEec
Q 032292           47 SENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        47 ~~~~~~fD~v~~d~~~-----------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ....++||+|++....           .+...+++.+.++|+|||+++++.
T Consensus       124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            0135689999975421           124468999999999999999964

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.02  E-value=2.2e-10  Score=79.40  Aligned_cols=86  Identities=12%  Similarity=-0.011  Sum_probs=59.5

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc-----------------------------------
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ-----------------------------------   46 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~-----------------------------------   46 (143)
                      +.|.--+++..| ...++.+|||+|||+|..+.+||+.--. .|.                                   
T Consensus         5 ~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           5 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            456555666665 4567889999999999999999987321 000                                   


Q ss_pred             ----c------CCCCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           47 ----S------ENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        47 ----~------~~~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                          .      ....+||+|+.....     .++..+++.+.++|||||.+++....+
T Consensus        84 ~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          84 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             EEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             eecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence                0      012468999876532     235678899999999999887654333

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.01  E-value=1.9e-10  Score=84.57  Aligned_cols=72  Identities=7%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC--Cc------------------------------cCCCCceeEEEEcCCccc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED--GQ------------------------------SENEGSFDYAFVDADKDN-   64 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~--~~------------------------------~~~~~~fD~v~~d~~~~~-   64 (143)
                      .+..+|||+|||+|..|..++......  +.                              +...++||+|++.....+ 
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl  171 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccccc
Confidence            467899999999999999887653321  10                              234678999998764322 


Q ss_pred             ----hHHHHHHHHhcccCCeEEEEeccCC
Q 032292           65 ----YCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        65 ----~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                          ...+++++.+.|+|||++++.+...
T Consensus       172 ~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         172 TDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             chhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence                3467899999999999998865443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.00  E-value=4.3e-10  Score=80.76  Aligned_cols=74  Identities=14%  Similarity=0.139  Sum_probs=56.2

Q ss_pred             HHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------cCCCCceeEEEEcCC
Q 032292           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------~~~~~~fD~v~~d~~   61 (143)
                      +..+....++++|||||||+|..+..+++.... ..                             ...+++||+|++...
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~v   90 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFKGDFTSRLQEHFND-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHV   90 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSC-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESC
T ss_pred             HHHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCe-EEEEeCcHHHhhhhhcccccccccccccccccccccccccccccce
Confidence            355556678899999999999999999876432 11                             234678999998763


Q ss_pred             c---cchHHHHHHHH-hcccCCeEEEEe
Q 032292           62 K---DNYCNYHERLM-KLLKVGGIAVYD   85 (143)
Q Consensus        62 ~---~~~~~~~~~~~-~~L~~gG~li~d   85 (143)
                      .   .+....+.++. ++|+|||.+++.
T Consensus        91 leh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          91 LEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            2   45567788887 789999999886

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.00  E-value=6.7e-10  Score=81.21  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=53.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .+.++|||||||+|..++.++++.|. .+                                  .....+||+|++.....
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~-~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh  157 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPH-VSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL  157 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcce-eEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccc
Confidence            46789999999999999999999874 21                                  11235799999876433


Q ss_pred             ch-----HHHHHHHHhcccCCeEEEEeccC
Q 032292           64 NY-----CNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        64 ~~-----~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ++     ...++++.+.|+|||.+++.+..
T Consensus       158 ~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         158 NWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             GSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            22     35689999999999988876543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=5.3e-10  Score=81.10  Aligned_cols=69  Identities=16%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d   59 (143)
                      +.+..+|||+|||+|+.+..+|+.++++|+                                     +...+.+|+||.|
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d  150 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence            346789999999999999999999876665                                     2235789999999


Q ss_pred             CCcc-chHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADKD-NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~~-~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .... +....++.+.+.|+|||++++.
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         151 VAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHhcccCCeEEEE
Confidence            7554 4466889999999999998863

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=4.3e-10  Score=83.09  Aligned_cols=64  Identities=25%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC---Cc---------------------------cCCCCceeEEEEcCCccchHH
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED---GQ---------------------------SENEGSFDYAFVDADKDNYCN   67 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~---~~---------------------------~~~~~~fD~v~~d~~~~~~~~   67 (143)
                      .++.+|||||||+|..+..+++..+..   |.                           +..+++||+|++......   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            367899999999999999999987641   11                           445789999997654433   


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 032292           68 YHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        68 ~~~~~~~~L~~gG~li~d   85 (143)
                       ++++.++|||||++++.
T Consensus       160 -~~e~~rvLkpgG~l~~~  176 (268)
T d1p91a_         160 -AEELARVVKPGGWVITA  176 (268)
T ss_dssp             -HHHHHHHEEEEEEEEEE
T ss_pred             -HHHHHHHhCCCcEEEEE
Confidence             56788999999999885

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.5e-10  Score=81.78  Aligned_cols=70  Identities=14%  Similarity=0.178  Sum_probs=52.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCC--c--------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDG--Q--------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~--~--------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .+..+|||||||+|..+..+++......  .                                +...++||+|++.....
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            4568999999999999998876544211  0                                23468999999876433


Q ss_pred             c-----hHHHHHHHHhcccCCeEEEEecc
Q 032292           64 N-----YCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ~-----~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      .     ....++++.++|+|||.+++.+.
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            2     24688999999999999887643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.93  E-value=1.1e-09  Score=78.39  Aligned_cols=68  Identities=19%  Similarity=0.175  Sum_probs=53.4

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d   59 (143)
                      +.+..+|||+|||+|+.+..+|+.+++ ++                                     ......+|+||.+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~  132 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  132 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence            356789999999999999999999874 33                                     1234578888887


Q ss_pred             CCc-cchHHHHHHHHhcccCCeEEEEe
Q 032292           60 ADK-DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        60 ~~~-~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..+ .+....+.++.+.|||||.+++.
T Consensus       133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~  159 (209)
T d1nt2a_         133 IAQKNQIEILKANAEFFLKEKGEVVIM  159 (209)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccChhhHHHHHHHHHHHhccCCeEEEE
Confidence            544 44556789999999999999874

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2e-10  Score=84.79  Aligned_cols=65  Identities=12%  Similarity=-0.012  Sum_probs=48.8

Q ss_pred             CEEEEEeccccHHHHHHHhhCC----CC-----Cc-----------------------------------------cCCC
Q 032292           21 KKTIEIGVFTGYSLLLTALTIP----ED-----GQ-----------------------------------------SENE   50 (143)
Q Consensus        21 ~~vLeiG~g~G~~t~~la~~~~----~~-----~~-----------------------------------------~~~~   50 (143)
                      .+|||||||+|..+..+++.+.    ..     +.                                         +...
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            4899999999999998876531    10     00                                         1235


Q ss_pred             CceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 032292           51 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        51 ~~fD~v~~d~~---~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++||+|++...   ..+....++.+.++|+|||++++.
T Consensus       122 ~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence            78999998653   246678999999999999988764

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.86  E-value=1.7e-09  Score=78.79  Aligned_cols=68  Identities=15%  Similarity=0.140  Sum_probs=49.7

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCC--Cc---------------------------------c-CCCCceeEEEEcCC
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPED--GQ---------------------------------S-ENEGSFDYAFVDAD   61 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~--~~---------------------------------~-~~~~~fD~v~~d~~   61 (143)
                      .+.++|||||||+|..+..+++.-...  |.                                 + ...++||+|++...
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            466899999999999888888763211  11                                 1 13568999998754


Q ss_pred             ccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292           62 KDN-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ~~~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...       ...+++.+.++|+|||+++++
T Consensus       103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            322       235788899999999999874

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.83  E-value=4.4e-09  Score=76.26  Aligned_cols=69  Identities=16%  Similarity=0.143  Sum_probs=50.0

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCC--CceeEEEEc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENE--GSFDYAFVD   59 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~--~~fD~v~~d   59 (143)
                      +.+..+|||+|||+|+++..+|+..+. +.                                   ....  ..+|+++.+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence            346789999999999999999998764 43                                   1122  345555555


Q ss_pred             CCc-cchHHHHHHHHhcccCCeEEEEec
Q 032292           60 ADK-DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        60 ~~~-~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ... .+....+.++.+.|||||.+++..
T Consensus       151 ~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         151 VAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            433 345667889999999999887753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.8e-09  Score=74.22  Aligned_cols=83  Identities=12%  Similarity=-0.007  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCC-CCc--------------------------------------
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ--------------------------------------   46 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~--------------------------------------   46 (143)
                      .--+++..+....+..+|||+|||+|..+.+||+.--. .|.                                      
T Consensus        32 ~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (229)
T d2bzga1          32 LLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN  111 (229)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence            33456666666677889999999999999999986321 000                                      


Q ss_pred             ------------cCCCCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           47 ------------SENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        47 ------------~~~~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                                  +...+.||+|+..+..     .....+++.+.++|+|||.+++....
T Consensus       112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence                        1235789999876532     34567899999999999987664333

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.80  E-value=2.7e-09  Score=72.50  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=54.4

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCCCCc
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SENEGS   52 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~~~~   52 (143)
                      .++..|....+.++|||+|||+|..++..+.+-.....                                    ....++
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~   83 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR   83 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccc
Confidence            34455555567899999999999999987765332111                                    234678


Q ss_pred             eeEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEe
Q 032292           53 FDYAFVDAD--KDNYCNYHERLM--KLLKVGGIAVYD   85 (143)
Q Consensus        53 fD~v~~d~~--~~~~~~~~~~~~--~~L~~gG~li~d   85 (143)
                      ||+||+|..  ...+...++.+.  ++|+|+|+++++
T Consensus        84 fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          84 FDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence            999999963  234455666654  579999999986

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=6.2e-09  Score=74.17  Aligned_cols=65  Identities=15%  Similarity=0.257  Sum_probs=49.9

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCCc
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      ...|||||||+|.+++.+|+..|+...                                     ....+++|.|++....
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            347999999999999999999875211                                     1456889999886422


Q ss_pred             c-----c------hHHHHHHHHhcccCCeEEEE
Q 032292           63 D-----N------YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        63 ~-----~------~~~~~~~~~~~L~~gG~li~   84 (143)
                      .     +      ....++.+.+.|||||.|.+
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence            1     1      14689999999999999876

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.78  E-value=8.1e-09  Score=75.67  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=52.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .+.++|||||||+|..+..++++.|. .+                                  ......||+|++.....
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~-~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh  158 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL  158 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcC-cEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccc
Confidence            46689999999999999999999875 22                                  12245699999865433


Q ss_pred             ch-----HHHHHHHHhcccCCeEEEEecc
Q 032292           64 NY-----CNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        64 ~~-----~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      ++     ...++++.+.|+|||.+++.+.
T Consensus       159 ~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         159 NWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            22     4568999999999997776543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=7.9e-09  Score=78.13  Aligned_cols=69  Identities=14%  Similarity=0.018  Sum_probs=49.5

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCC
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ...+.++|||||||+|..++.+|++......                                  +...++||+|++..-
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~  114 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEec
Confidence            3457899999999999999988876432100                                  234578999998532


Q ss_pred             c------cchHHHHHHHHhcccCCeEEEE
Q 032292           62 K------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        62 ~------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .      ......+....++|||||+++-
T Consensus       115 ~~~~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         115 GYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence            1      2344567777799999999973

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=9.8e-09  Score=76.96  Aligned_cols=68  Identities=15%  Similarity=0.064  Sum_probs=47.7

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      ..+.++|||||||+|..++.+|++......                                  ....++||+|++..-.
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            457899999999999999999987432100                                  2345789999985321


Q ss_pred             -----cc-hHHHHHHHHhcccCCeEEEE
Q 032292           63 -----DN-YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        63 -----~~-~~~~~~~~~~~L~~gG~li~   84 (143)
                           .. ....+....++|+|||+++-
T Consensus       113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         113 YFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eecccccccHHHHHHHHhcCCCCcEEec
Confidence                 22 23445555689999999974

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=8.4e-09  Score=77.66  Aligned_cols=68  Identities=15%  Similarity=0.044  Sum_probs=50.1

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      ..+.++|||||||+|..++.+|++......                                  +...++||+|++..-.
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            457899999999999999998886432100                                  2345789999876321


Q ss_pred             ------cchHHHHHHHHhcccCCeEEEE
Q 032292           63 ------DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        63 ------~~~~~~~~~~~~~L~~gG~li~   84 (143)
                            ..+...+..+.++|+|||.++-
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence                  2356677888899999999974

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.8e-09  Score=76.36  Aligned_cols=41  Identities=29%  Similarity=0.149  Sum_probs=31.7

Q ss_pred             CCCceeEEEEcCCc-------cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           49 NEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        49 ~~~~fD~v~~d~~~-------~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      ..++||+|++....       .++..+++.+.++|||||.+++.+...
T Consensus       149 ~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~  196 (257)
T d2a14a1         149 VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR  196 (257)
T ss_dssp             CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             cCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence            35789999975432       245678899999999999999876654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=3.6e-08  Score=76.77  Aligned_cols=74  Identities=19%  Similarity=0.178  Sum_probs=53.7

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCC---Cc-------------------------------------cC-------
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPED---GQ-------------------------------------SE-------   48 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~---~~-------------------------------------~~-------   48 (143)
                      .+.+.+++||||||+|..++.+|+..+..   |.                                     ..       
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d  292 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA  292 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccc
Confidence            45677899999999999999999887631   11                                     00       


Q ss_pred             -CCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           49 -NEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        49 -~~~~fD~v~~d~~~--~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                       .-..+|+|++....  .+....+.++.+.|||||.||+.+.+.
T Consensus       293 ~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         293 ELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             HHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             cccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence             01245788886532  355678899999999999998866543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.6e-08  Score=74.22  Aligned_cols=40  Identities=15%  Similarity=0.071  Sum_probs=30.6

Q ss_pred             CCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEEeccCC
Q 032292           50 EGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLW   89 (143)
Q Consensus        50 ~~~fD~v~~d~~-------~~~~~~~~~~~~~~L~~gG~li~d~~~~   89 (143)
                      .++||+|++-..       ..++..+++.+.++|||||++++-+.+.
T Consensus       155 ~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~  201 (263)
T d2g72a1         155 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  201 (263)
T ss_dssp             CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             cCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence            357999987532       2356778999999999999999876643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.59  E-value=7.9e-08  Score=68.28  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=50.0

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCceeEEEEcCC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ....|||||||+|..++.+|+..|+...                                     .....++|.|++...
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            3457999999999999999999886311                                     134678999987542


Q ss_pred             c----c-c------hHHHHHHHHhcccCCeEEEE
Q 032292           62 K----D-N------YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        62 ~----~-~------~~~~~~~~~~~L~~gG~li~   84 (143)
                      .    . +      ....++.+.+.|+|||.|.+
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            1    1 1      25689999999999999865

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.50  E-value=7.4e-08  Score=67.19  Aligned_cols=77  Identities=14%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cCC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SEN   49 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~~   49 (143)
                      .+...|.......+|||+.||+|..++..+.+-.....                                       ...
T Consensus        31 alFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~  110 (182)
T d2fhpa1          31 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE  110 (182)
T ss_dssp             HHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhccc
Confidence            44555555567899999999999999987776332111                                       123


Q ss_pred             CCceeEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEe
Q 032292           50 EGSFDYAFVDAD--KDNYCNYHERLM--KLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~--~~~~~~~~~~~~--~~L~~gG~li~d   85 (143)
                      ..+||+||+|-.  ...+...++.+.  .+|+++|+|+++
T Consensus       111 ~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         111 KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            568999999973  346777888876  479999999875

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.50  E-value=5.6e-08  Score=73.47  Aligned_cols=74  Identities=20%  Similarity=0.275  Sum_probs=53.8

Q ss_pred             HHHhh-cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cCCCCc
Q 032292           13 MLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SENEGS   52 (143)
Q Consensus        13 ~l~~~-~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~~~~~   52 (143)
                      .+... .+.++|||++||+|..++.+|+.-.....                                       ....++
T Consensus       138 ~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~  217 (324)
T d2as0a2         138 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEK  217 (324)
T ss_dssp             HHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             HHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCC
Confidence            33443 35789999999999999998876321100                                       123578


Q ss_pred             eeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEec
Q 032292           53 FDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        53 fD~v~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ||+|++|...            ..|.+.+..+.++|+|||+|++..
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999998642            246677888899999999998753

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=2.5e-07  Score=63.75  Aligned_cols=75  Identities=19%  Similarity=0.157  Sum_probs=49.5

Q ss_pred             HHHHHHh-hcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCC
Q 032292           10 LMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEG   51 (143)
Q Consensus        10 ~l~~l~~-~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~   51 (143)
                      +...|.. ..+..+|||+|||+|..++..+..-.. ..                                     ....+
T Consensus        31 lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~-vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (171)
T d1ws6a1          31 LFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGE  109 (171)
T ss_dssp             HHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHhhccccCCCeEEEeccccchhhhhhhhccch-hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCC
Confidence            3334443 346789999999999999987665321 11                                     13457


Q ss_pred             ceeEEEEcCC-ccchHHHHHHHH--hcccCCeEEEEe
Q 032292           52 SFDYAFVDAD-KDNYCNYHERLM--KLLKVGGIAVYD   85 (143)
Q Consensus        52 ~fD~v~~d~~-~~~~~~~~~~~~--~~L~~gG~li~d   85 (143)
                      +||+||+|-. ..++...+..+.  .+|++||+++++
T Consensus       110 ~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         110 RFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            8999999853 123333444443  589999999875

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=2.6e-07  Score=64.24  Aligned_cols=77  Identities=12%  Similarity=0.067  Sum_probs=54.9

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------cCCCCce
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------SENEGSF   53 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~f   53 (143)
                      .+...|.......+|||++||+|..++..+.+-.....                                   .....+|
T Consensus        33 ~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~f  112 (183)
T d2fpoa1          33 TLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPH  112 (183)
T ss_dssp             HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCE
T ss_pred             HHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccccccc
Confidence            34444444457789999999999999987765332111                                   3356789


Q ss_pred             eEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEe
Q 032292           54 DYAFVDAD--KDNYCNYHERLM--KLLKVGGIAVYD   85 (143)
Q Consensus        54 D~v~~d~~--~~~~~~~~~~~~--~~L~~gG~li~d   85 (143)
                      |+||+|-.  ...+...++.+.  .+|+++|+++++
T Consensus       113 DlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         113 NIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            99999964  334667777776  479999999885

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=3.1e-07  Score=67.92  Aligned_cols=80  Identities=16%  Similarity=0.164  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHhh--cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------c
Q 032292            5 TIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------S   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------~   47 (143)
                      |++-.++......  .++.+|||+|||+|..++.+|...+. ..                                   +
T Consensus        92 peTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~  170 (274)
T d2b3ta1          92 PDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA  170 (274)
T ss_dssp             TTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG
T ss_pred             cchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc
Confidence            4444455444333  34678999999999999999999875 22                                   2


Q ss_pred             CCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           48 ENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...++||+|+++-.-                            ..|...++.+.++|+|||.+++.
T Consensus       171 ~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         171 LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            235689999986310                            11334667777999999999884

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.9e-07  Score=68.78  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=52.7

Q ss_pred             HHHhhcCCCEEEEEeccccHHHHHHHhhCCCC---Cc------------------------------------cCCC---
Q 032292           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPED---GQ------------------------------------SENE---   50 (143)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~---~~------------------------------------~~~~---   50 (143)
                      ..+.+.+..+|||||||+|..++.+|+..+..   |.                                    ....   
T Consensus       145 ~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~  224 (328)
T d1nw3a_         145 DEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW  224 (328)
T ss_dssp             HHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHH
T ss_pred             HHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccc
Confidence            33446678899999999999999999887642   11                                    0000   


Q ss_pred             ----CceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEeccC
Q 032292           51 ----GSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        51 ----~~fD~v~~d~~~--~~~~~~~~~~~~~L~~gG~li~d~~~   88 (143)
                          ...|+||+....  .+....+.++.+.|||||.||+...+
T Consensus       225 ~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         225 RERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             HHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence                113778875432  34556788999999999999975443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.40  E-value=3.7e-07  Score=68.64  Aligned_cols=68  Identities=18%  Similarity=0.246  Sum_probs=51.8

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------------cCCCCcee
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------------SENEGSFD   54 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------------~~~~~~fD   54 (143)
                      ..+|++||.||.|.|..+.++++..+. .+                                          ....++||
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTV-EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCc-ceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            457899999999999999998776442 11                                          23457899


Q ss_pred             EEEEcCCcc----c-----h-HHHHHHHHhcccCCeEEEEe
Q 032292           55 YAFVDADKD----N-----Y-CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        55 ~v~~d~~~~----~-----~-~~~~~~~~~~L~~gG~li~d   85 (143)
                      +|++|....    .     | .++++.+.+.|+|||++++.
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            999997311    1     1 46889999999999999874

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.39  E-value=1.2e-07  Score=71.49  Aligned_cols=72  Identities=25%  Similarity=0.378  Sum_probs=51.8

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCC----CCc---------------------------------cCCCCceeEE
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPE----DGQ---------------------------------SENEGSFDYA   56 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~----~~~---------------------------------~~~~~~fD~v   56 (143)
                      +....+.++|||++||+|..++.+|.....    +..                                 ....++||+|
T Consensus       140 ~~~~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         140 YMERFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             HGGGCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence            344557899999999999999998865321    000                                 1235789999


Q ss_pred             EEcCCc------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADK------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++|...            ..|.+.+..+.++|+|||+|++.
T Consensus       220 i~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~  260 (318)
T d1wxxa2         220 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA  260 (318)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            998531            23456677888999999999874

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.38  E-value=1.5e-06  Score=60.98  Aligned_cols=82  Identities=20%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             cChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------cCCCCceeEE
Q 032292            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------SENEGSFDYA   56 (143)
Q Consensus         3 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------~~~~~~fD~v   56 (143)
                      .++...++|..++...+..+|||.|||+|.....+.+..+....                          ......||+|
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~~~~~fd~i   82 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLI   82 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhcccccccccee
Confidence            45677899999998888899999999999988888766553221                          2235789999


Q ss_pred             EEcCCcc--------------------------------chHHHHHHHHhcccCCeEEEE
Q 032292           57 FVDADKD--------------------------------NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        57 ~~d~~~~--------------------------------~~~~~~~~~~~~L~~gG~li~   84 (143)
                      +.+-...                                -|...++.++++|++||.+++
T Consensus        83 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          83 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            9763210                                123456788899999999865

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=6e-07  Score=63.79  Aligned_cols=65  Identities=17%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEEEcCCc
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAFVDADK   62 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~~d~~~   62 (143)
                      .++++++|+|||.|.-++.+|-..|+ .+                                  . ....+||+|.+.|- 
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~-~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~-  141 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-  141 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-
T ss_pred             hcCCceeeeeccCCceeeehhhhccc-ceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh-
Confidence            46789999999999999999988775 22                                  1 23458999999885 


Q ss_pred             cchHHHHHHHHhcccCCeEEEE
Q 032292           63 DNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ......++.+.++++++|.+++
T Consensus       142 ~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         142 ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             cCHHHHHHHHHHhcCCCcEEEE
Confidence            5677888999999999999965

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.27  E-value=5.6e-07  Score=67.74  Aligned_cols=70  Identities=11%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeE
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDY   55 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~   55 (143)
                      ...+.++|||+.||+|..++.++..-.....                                        ....++||+
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            3456899999999999999987764321100                                        123468999


Q ss_pred             EEEcCCc------------cchHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADK------------DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~------------~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |++|...            .+|.+.++.+.++|+|||+|++.
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~  262 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS  262 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            9999531            24667888889999999999874

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.18  E-value=2e-06  Score=62.33  Aligned_cols=70  Identities=16%  Similarity=0.118  Sum_probs=52.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------cCCCCceeEEEEcCCccch-----H
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------SENEGSFDYAFVDADKDNY-----C   66 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------~~~~~~fD~v~~d~~~~~~-----~   66 (143)
                      .+.++|||||||+|..++.++++.|. .+                          .......|++++.....++     .
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~  158 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCI  158 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHH
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCC-CeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHH
Confidence            45689999999999999999999874 22                          1122356999886543333     3


Q ss_pred             HHHHHHHhcccCCeEEEEeccC
Q 032292           67 NYHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        67 ~~~~~~~~~L~~gG~li~d~~~   88 (143)
                      ..++.+.+.|+|||.+++.+.+
T Consensus       159 ~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         159 EFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEEEEEE
Confidence            5788999999999988776554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.17  E-value=4.7e-06  Score=62.02  Aligned_cols=69  Identities=19%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYA   56 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v   56 (143)
                      ..+|++||-||.|.|..+.++++..+....                                        ....++||+|
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            357899999999999999988876442100                                        2346789999


Q ss_pred             EEcCCccc--------hHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADKDN--------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~~~--------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++|.....        -.++++.+.+.|+|||++++.
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            99963211        146889999999999999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.14  E-value=3e-06  Score=59.14  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             CCceeEEEEcCCc-----cchHHHHHHHHhcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~-----~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .++||+||+..-.     ......++.+.+.|+|||+|++-
T Consensus       130 ~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         130 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            4689999997532     22346788899999999999864

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.14  E-value=1.8e-06  Score=63.23  Aligned_cols=70  Identities=16%  Similarity=0.055  Sum_probs=50.6

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCCc
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDADK   62 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~~   62 (143)
                      ..+..+|||+|||+|+.++.+|+.......                                  ....+.||.|+++-..
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~  184 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  184 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence            356899999999999999999977421100                                  1235679999987543


Q ss_pred             cchHHHHHHHHhcccCCeEEEEecc
Q 032292           63 DNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        63 ~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      . -..+++.+.+.|++||+|.++..
T Consensus       185 ~-~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         185 R-THEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             S-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             c-hHHHHHHHHhhcCCCCEEEEEec
Confidence            2 24567788899999999976543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=2.7e-06  Score=61.58  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cCCCCceeEEEEc
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SENEGSFDYAFVD   59 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~~~~~fD~v~~d   59 (143)
                      ...+++|||||.|.-++.+|-..|. .+                                       ....++||+|++.
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~-~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR  148 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCC-ccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence            4679999999999999999988875 22                                       1224689999999


Q ss_pred             CCccchHHHHHHHHhcccCCeEEEE
Q 032292           60 ADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        60 ~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      |- ......++.+.+++++||.+++
T Consensus       149 Av-a~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         149 AV-ARLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             CC-SCHHHHHHHHGGGEEEEEEEEE
T ss_pred             hh-hCHHHHHHHHhhhcccCCEEEE
Confidence            85 4577888899999999999965

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.10  E-value=4.2e-06  Score=57.95  Aligned_cols=77  Identities=14%  Similarity=0.111  Sum_probs=54.5

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------------cCC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------------SEN   49 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------------~~~   49 (143)
                      .+...|.......+|||+-||||..++..+.+-.....                                       ...
T Consensus        33 alFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~  112 (183)
T d2ifta1          33 TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN  112 (183)
T ss_dssp             HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS
T ss_pred             HHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccccc
Confidence            44555544457789999999999999998766432111                                       122


Q ss_pred             CCceeEEEEcCCc--cchHHHHHHHH--hcccCCeEEEEe
Q 032292           50 EGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD   85 (143)
Q Consensus        50 ~~~fD~v~~d~~~--~~~~~~~~~~~--~~L~~gG~li~d   85 (143)
                      ..+||+||+|-.-  ..+...++.+.  ++|+++|+++++
T Consensus       113 ~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         113 QPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             SCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence            4579999999643  33566777765  579999999986

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.04  E-value=8.1e-06  Score=61.16  Aligned_cols=76  Identities=22%  Similarity=0.194  Sum_probs=53.5

Q ss_pred             HHHHHHH--hhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------
Q 032292            9 QLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------   46 (143)
Q Consensus         9 ~~l~~l~--~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------   46 (143)
                      ++|.+++  ...+|++||-||-|.|..+..+.+.-+. .+                                        
T Consensus        94 E~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v-~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~  172 (312)
T d2b2ca1          94 EMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESV-EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF  172 (312)
T ss_dssp             HHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTC-CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH
T ss_pred             HHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCc-ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH
Confidence            3444433  3457999999999999999998875432 11                                        


Q ss_pred             -cCCCCceeEEEEcCCccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292           47 -SENEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        47 -~~~~~~fD~v~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                       ....++||+|++|.....       -.++++.+.+.|+|||+++..
T Consensus       173 l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         173 LKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             HHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             HHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence             124678999999974321       135788999999999999875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=7.4e-06  Score=56.72  Aligned_cols=68  Identities=15%  Similarity=0.118  Sum_probs=50.6

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc---------------------------------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ---------------------------------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~---------------------------------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+..+|||+||+.|.|+..+++..+..++                                 .....+||+|++|+... 
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~  100 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchh
Confidence            46789999999999999999887655333                                 22457899999998531 


Q ss_pred             --ch-----------HHHHHHHHhcccCCeEEEEe
Q 032292           64 --NY-----------CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 --~~-----------~~~~~~~~~~L~~gG~li~d   85 (143)
                        ++           ...+.-+.+.|++||.+|+-
T Consensus       101 sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_         101 SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence              11           12455567999999999975

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=1.9e-05  Score=58.55  Aligned_cols=68  Identities=25%  Similarity=0.297  Sum_probs=51.8

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeEE
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDYA   56 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~v   56 (143)
                      .+|++||-||-|.|..+..+.+..+....                                         ...+++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            57899999999999999998876442110                                         1234689999


Q ss_pred             EEcCCccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADKDN-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++|.....       -.++++.+.+.|+|||++++.
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence            99974321       145899999999999999875

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.97  E-value=6.7e-06  Score=57.74  Aligned_cols=37  Identities=16%  Similarity=0.028  Sum_probs=26.7

Q ss_pred             ChHHHHHHHHHHhhc---CCCEEEEEeccccHHHHHHHhh
Q 032292            4 LTIHGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~---~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      ++..+..+..++...   .+++|||+|||+|..++.++..
T Consensus        28 p~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~   67 (201)
T d1wy7a1          28 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL   67 (201)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc
Confidence            445555555555443   5689999999999999987765

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.94  E-value=7.1e-06  Score=57.64  Aligned_cols=57  Identities=16%  Similarity=0.096  Sum_probs=37.3

Q ss_pred             ChHHHHHHHHHHhhc---CCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------cCCCCcee
Q 032292            4 LTIHGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------SENEGSFD   54 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~---~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------~~~~~~fD   54 (143)
                      +++.+..+...+...   .+++|||+|||+|..++.++..-.....                          ...+++||
T Consensus        30 ~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD  109 (197)
T d1ne2a_          30 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYD  109 (197)
T ss_dssp             CHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEE
T ss_pred             CHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcCCcce
Confidence            344444443333332   5789999999999999887765322111                          23468999


Q ss_pred             EEEEcC
Q 032292           55 YAFVDA   60 (143)
Q Consensus        55 ~v~~d~   60 (143)
                      +|++|-
T Consensus       110 ~Vi~NP  115 (197)
T d1ne2a_         110 TWIMNP  115 (197)
T ss_dssp             EEEECC
T ss_pred             EEEeCc
Confidence            999984

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.92  E-value=8.9e-06  Score=58.61  Aligned_cols=69  Identities=13%  Similarity=0.109  Sum_probs=47.2

Q ss_pred             CCCEEEEEeccccHHHHHHHhhCCCCCc------------------------c--CCCCceeEEEEcCCcc-----chHH
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------S--ENEGSFDYAFVDADKD-----NYCN   67 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------~--~~~~~fD~v~~d~~~~-----~~~~   67 (143)
                      +.++|||||||+|..++.++++.|. .+                        .  ......|.+++.....     +-..
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~  159 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPT-IKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK  159 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTT-SEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHH
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCC-CeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHH
Confidence            4579999999999999999999884 22                        0  1112345555433222     2345


Q ss_pred             HHHHHHhcccCCeEEEEeccC
Q 032292           68 YHERLMKLLKVGGIAVYDNTL   88 (143)
Q Consensus        68 ~~~~~~~~L~~gG~li~d~~~   88 (143)
                      .++++.+.|+|||.+++.+..
T Consensus       160 iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         160 FLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             HHHHHHHHCCSSSCEEEEECE
T ss_pred             HHHHHHHhcCCCceEEEEEEE
Confidence            789999999999977665544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=8.5e-06  Score=60.30  Aligned_cols=69  Identities=20%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCCCCceeEE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SENEGSFDYA   56 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~~~~fD~v   56 (143)
                      ..+|++||-||-|.|..+..+.+..+..-.                                        ....++||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            357899999999999999998765432100                                        2346789999


Q ss_pred             EEcCCccch-------HHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADKDNY-------CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~~~~-------~~~~~~~~~~L~~gG~li~d   85 (143)
                      ++|......       .++++.+.+.|+|||++++.
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            999743211       24788999999999999875

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=9.6e-06  Score=59.67  Aligned_cols=68  Identities=19%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             hcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------cCCCCceeE
Q 032292           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------SENEGSFDY   55 (143)
Q Consensus        17 ~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------~~~~~~fD~   55 (143)
                      ..+|++||-||-|.|..+.++.+..+. .+                                         ....++||+
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~-~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSV-KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTC-SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCc-ceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence            357899999999999999998876442 11                                         234678999


Q ss_pred             EEEcCCccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKDN-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |++|.....       -.++++.+.+.|+|||+++..
T Consensus       152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            999974321       246889999999999999875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.87  E-value=7.6e-06  Score=60.22  Aligned_cols=70  Identities=17%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             hhcCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------------------------cCCCC
Q 032292           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------------------------SENEG   51 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------------------------~~~~~   51 (143)
                      ...+|++||.||.|.|..+..+++.-.....                                            -...+
T Consensus        69 ~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          69 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             cCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            3467999999999999999887764221000                                            01146


Q ss_pred             ceeEEEEcCCccc-------hHHHHHHHHhcccCCeEEEEe
Q 032292           52 SFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        52 ~fD~v~~d~~~~~-------~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +||+|++|.....       -.++++.+.+.|+|||++++.
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            8999999974321       136799999999999999875

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=1.9e-05  Score=55.11  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------cCC
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------SEN   49 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~~~   49 (143)
                      ++..+ ...+...+||++||+|..|..+++.++. ++                                        ...
T Consensus        15 vi~~l-~~~~~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~   92 (192)
T d1m6ya2          15 VIEFL-KPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLG   92 (192)
T ss_dssp             HHHHH-CCCTTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTT
T ss_pred             HHHhh-CCCCCCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcC
Confidence            34444 3456789999999999999999999864 54                                        223


Q ss_pred             CCceeEEEEcCCccc------------hHHHHHHHHhcccCCeEEEE
Q 032292           50 EGSFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        50 ~~~fD~v~~d~~~~~------------~~~~~~~~~~~L~~gG~li~   84 (143)
                      .++||.|+.|...+.            ....++.+.++|+|||.+++
T Consensus        93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i  139 (192)
T d1m6ya2          93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV  139 (192)
T ss_dssp             CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred             CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence            578999999975432            23467778899999999987

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.83  E-value=1.8e-05  Score=57.07  Aligned_cols=69  Identities=12%  Similarity=0.083  Sum_probs=50.3

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCCCCc--------------------------cCCCCceeEEEEcCCccch-----H
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ--------------------------SENEGSFDYAFVDADKDNY-----C   66 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~~~~--------------------------~~~~~~fD~v~~d~~~~~~-----~   66 (143)
                      .+.++|||||||+|..++.++++.|. .+                          ......+|++++..-.+++     .
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~  157 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPK-LKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCL  157 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCC-CeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHH
Confidence            35689999999999999999999885 22                          1223468999886543333     3


Q ss_pred             HHHHHHHhcccCC---eEEEEecc
Q 032292           67 NYHERLMKLLKVG---GIAVYDNT   87 (143)
Q Consensus        67 ~~~~~~~~~L~~g---G~li~d~~   87 (143)
                      ..++.+.+.|+||   |.+++.+.
T Consensus       158 ~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         158 RILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             HHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             HHHHHHHHHcCcccCCcEEEEEEe
Confidence            5788899999998   65555443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.76  E-value=2.3e-05  Score=58.58  Aligned_cols=76  Identities=13%  Similarity=0.085  Sum_probs=50.2

Q ss_pred             HHHHHH-HhhcCCCEEEEEeccccHHHHHHHhhCCCCCc----------------------------------------c
Q 032292            9 QLMAML-LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ----------------------------------------S   47 (143)
Q Consensus         9 ~~l~~l-~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~----------------------------------------~   47 (143)
                      +++..+ ....++++|||+.||+|..++.+|..-.+ ..                                        .
T Consensus       121 ~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA~-V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~  199 (309)
T d2igta1         121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAE-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  199 (309)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCCe-EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHh
Confidence            444443 34457899999999999999998875321 10                                        0


Q ss_pred             CCCCceeEEEEcCCc------------cch-HHHHHHHHhcccCCeEEEEe
Q 032292           48 ENEGSFDYAFVDADK------------DNY-CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        48 ~~~~~fD~v~~d~~~------------~~~-~~~~~~~~~~L~~gG~li~d   85 (143)
                      ...++||+|++|-..            ..| ...++.+..+|+|||.+++-
T Consensus       200 ~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~  250 (309)
T d2igta1         200 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  250 (309)
T ss_dssp             HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             hcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            124689999998421            122 33455677899999876553

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.73  E-value=2.6e-05  Score=56.55  Aligned_cols=68  Identities=10%  Similarity=-0.024  Sum_probs=49.0

Q ss_pred             cCCCEEEEEeccccHHHHHHHhhCCC----------CCc-----------------------cCCCCceeEEEEcCCcc-
Q 032292           18 VNAKKTIEIGVFTGYSLLLTALTIPE----------DGQ-----------------------SENEGSFDYAFVDADKD-   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~G~~t~~la~~~~~----------~~~-----------------------~~~~~~fD~v~~d~~~~-   63 (143)
                      .+..+|+|+|||.|.++-.++...+-          ++.                       ....++.|.|++|.... 
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~ess  144 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGESS  144 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCCC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCCEEEeeCCCCC
Confidence            35579999999999999999866321          010                       23467899999997431 


Q ss_pred             --------chHHHHHHHHhcccCCeEEEEe
Q 032292           64 --------NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 --------~~~~~~~~~~~~L~~gG~li~d   85 (143)
                              .-...++.+.+.|+|||-+++-
T Consensus       145 ~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         145 PNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence                    1234677778999999988874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.73  E-value=5.6e-05  Score=56.19  Aligned_cols=79  Identities=18%  Similarity=0.143  Sum_probs=52.2

Q ss_pred             HHHHHHHHHH----hhcCCCEEEEEeccccHHHHHHHhhCCCCC----c-------------------------------
Q 032292            6 IHGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIPEDG----Q-------------------------------   46 (143)
Q Consensus         6 ~~~~~l~~l~----~~~~~~~vLeiG~g~G~~t~~la~~~~~~~----~-------------------------------   46 (143)
                      ....+|..++    ...+..+|||.+||+|...+.+...+....    .                               
T Consensus       100 ~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d  179 (328)
T d2f8la1         100 SIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD  179 (328)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccc
Confidence            3445555443    334567899999999999888765542211    0                               


Q ss_pred             ---cCCCCceeEEEEcCCcc---------------------chHHHHHHHHhcccCCeEEEE
Q 032292           47 ---SENEGSFDYAFVDADKD---------------------NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 ---~~~~~~fD~v~~d~~~~---------------------~~~~~~~~~~~~L~~gG~li~   84 (143)
                         .....+||+|+.+-.-.                     .+...++.+.++|++||.+++
T Consensus       180 ~~~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         180 GLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             TTSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence               23457899999874210                     123468888999999997654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=0.00014  Score=53.15  Aligned_cols=36  Identities=19%  Similarity=0.133  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHh---hcCCCEEEEEeccccHHHHHHHhh
Q 032292            5 TIHGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         5 ~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      |++-.++.....   ..+..+++|+|||+|..++.+++.
T Consensus        93 peTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~  131 (271)
T d1nv8a_          93 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF  131 (271)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc
Confidence            344444444332   345689999999999999998864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=0.00036  Score=51.81  Aligned_cols=81  Identities=23%  Similarity=0.283  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc------------------------------------cCC
Q 032292            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ------------------------------------SEN   49 (143)
Q Consensus         6 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~------------------------------------~~~   49 (143)
                      ....+...++...+..+|||+.+|.|.=|..++..+...+.                                    ...
T Consensus       103 ~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~  182 (313)
T d1ixka_         103 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL  182 (313)
T ss_dssp             HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred             ccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence            34455555666677889999999999999999988876544                                    123


Q ss_pred             CCceeEEEEcCC--------c-c---------ch-------HHHHHHHHhcccCCeEEEEec
Q 032292           50 EGSFDYAFVDAD--------K-D---------NY-------CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        50 ~~~fD~v~~d~~--------~-~---------~~-------~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...||.|++|+.        . .         +.       .+.+..+.++|+|||.||...
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            578999999962        0 0         00       124567779999999998863

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00014  Score=52.37  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=21.3

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCC
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPE   43 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~   43 (143)
                      ..++||||||+|..++.+|+..+.
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~   85 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNG   85 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHC
T ss_pred             cceEEEeCCCchHHHHHHHHhCCC
Confidence            459999999999999999998764

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.12  E-value=0.00064  Score=52.20  Aligned_cols=38  Identities=16%  Similarity=-0.110  Sum_probs=30.2

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      +....++|..++......+|+|-.||+|...+.+.+.+
T Consensus       147 P~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~  184 (425)
T d2okca1         147 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYM  184 (425)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHH
T ss_pred             chhhhHhhheeccCcccceeeccccccCccHHHHHHHH
Confidence            34567788888876677899999999999887776654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.001  Score=48.54  Aligned_cols=81  Identities=22%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------c
Q 032292            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------S   47 (143)
Q Consensus         5 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~   47 (143)
                      .....+...++...+..+|||+.++.|.=|..+|..... +.                                     .
T Consensus        88 D~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~  166 (284)
T d1sqga2          88 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW  166 (284)
T ss_dssp             CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH
T ss_pred             cccccccccccCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchh
Confidence            344455566666677899999999999999999887654 33                                     1


Q ss_pred             CCCCceeEEEEcCC---------ccc------------h----HHHHHHHHhcccCCeEEEEec
Q 032292           48 ENEGSFDYAFVDAD---------KDN------------Y----CNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        48 ~~~~~fD~v~~d~~---------~~~------------~----~~~~~~~~~~L~~gG~li~d~   86 (143)
                      ...+.||.|++|+.         ..+            +    ...++.+.++|+|||+||...
T Consensus       167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            23467999999962         000            0    125667778999999999864

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=96.88  E-value=0.00034  Score=49.94  Aligned_cols=34  Identities=21%  Similarity=0.127  Sum_probs=26.0

Q ss_pred             HHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         9 ~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +-+...+...+..+|||||||+|..|..|++...
T Consensus        11 ~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~   44 (235)
T d1qama_          11 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN   44 (235)
T ss_dssp             HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS
T ss_pred             HHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC
Confidence            3333344455789999999999999999998743

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.82  E-value=0.00093  Score=50.81  Aligned_cols=73  Identities=22%  Similarity=0.253  Sum_probs=55.1

Q ss_pred             HHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-----------------------------------------------
Q 032292           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-----------------------------------------------   46 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-----------------------------------------------   46 (143)
                      +++..++.+|||..||+|.-++..|...+....                                               
T Consensus        40 ~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da  119 (375)
T d2dula1          40 LLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA  119 (375)
T ss_dssp             HHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH
T ss_pred             HHHHhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh
Confidence            345568999999999999999988776553111                                               


Q ss_pred             ----cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 032292           47 ----SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        47 ----~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                          ....+.||+|.+|.- .....+++.+.+.++.||+|.+--+
T Consensus       120 ~~~~~~~~~~fDvIDiDPf-Gs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         120 NRLMAERHRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHHHHSTTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhHhhcCcCCcccCCCC-CCcHHHHHHHHHHhccCCEEEEEec
Confidence                012457999999973 4457789999999999999988644

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00086  Score=48.31  Aligned_cols=39  Identities=8%  Similarity=-0.093  Sum_probs=29.2

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++...+-+...+...+.+.|||||||+|..|..|++...
T Consensus         6 d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~   44 (252)
T d1qyra_           6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD   44 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC
Confidence            344444455555566788999999999999999998643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0022  Score=50.48  Aligned_cols=37  Identities=11%  Similarity=-0.141  Sum_probs=28.4

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhh
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT   40 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~   40 (143)
                      +....++|..++......+|+|-.||+|...+...+.
T Consensus       149 P~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~  185 (524)
T d2ar0a1         149 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRY  185 (524)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHH
T ss_pred             ccchhHhhhhcccCccchhhcchhhhcchhhHHHHHH
Confidence            3456678888877666789999999999887765554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.43  E-value=0.00028  Score=50.78  Aligned_cols=32  Identities=22%  Similarity=0.100  Sum_probs=25.4

Q ss_pred             HHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      +...+...+..+|||||||+|..|..|++...
T Consensus        21 Iv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~   52 (245)
T d1yuba_          21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKISK   52 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS
T ss_pred             HHHhcCCCCCCeEEEECCCccHHHHHHHhhcC
Confidence            34444556778999999999999999998743

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0086  Score=43.64  Aligned_cols=37  Identities=24%  Similarity=0.224  Sum_probs=28.3

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ   46 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~   46 (143)
                      +...++...+..+|||+.+|.|.-|..+|..+.+.++
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~  121 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGK  121 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSE
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCce
Confidence            3444555567889999999999999999988765443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.02  E-value=0.016  Score=38.19  Aligned_cols=68  Identities=10%  Similarity=-0.019  Sum_probs=45.9

Q ss_pred             hhcCCCEEEEEecc-ccHHHHHHHhhCCCCCc------------------------c--------------CCCCceeEE
Q 032292           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ------------------------S--------------ENEGSFDYA   56 (143)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~~~~~------------------------~--------------~~~~~fD~v   56 (143)
                      ...+.++||-+||| .|..++.+|+..+..-.                        .              ...+.+|+|
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence            34567899999998 57888888888653100                        0              012457887


Q ss_pred             EEcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           57 FVDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        57 ~~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      |-...   -...++.+.++++++|.+++-.
T Consensus       103 id~~g---~~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         103 IDCSG---NEKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             EECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             eecCC---ChHHHHHHHHHHhcCCceEEEe
Confidence            64332   2456788899999999998743

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0033  Score=45.80  Aligned_cols=39  Identities=13%  Similarity=-0.046  Sum_probs=29.0

Q ss_pred             ChHHHHHHHHHHhhcCCCEEEEEeccccHHHHHHHhhCC
Q 032292            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP   42 (143)
Q Consensus         4 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~   42 (143)
                      ++...+-+...+...+...|||||+|+|..|..|++...
T Consensus         6 d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~   44 (278)
T d1zq9a1           6 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK   44 (278)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC
Confidence            344444444555556678999999999999999998753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.86  E-value=0.019  Score=38.32  Aligned_cols=69  Identities=17%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             HHhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------------------c-CCCCceeEEE
Q 032292           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------------------S-ENEGSFDYAF   57 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------------------~-~~~~~fD~v~   57 (143)
                      .+...+.++||-+|||. |..++.+|+.....-.                                  . .....+|+||
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEE
Confidence            44566788999999987 8889999988753111                                  0 1224499987


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           58 VDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      -....   ...++.+++.++|+|.+++-
T Consensus       102 d~~g~---~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2         102 MAGGG---SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             ECSSC---TTHHHHHHHHEEEEEEEEEC
T ss_pred             EccCC---HHHHHHHHHHHhcCCEEEEE
Confidence            55432   23567888999999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0013  Score=43.88  Aligned_cols=69  Identities=22%  Similarity=0.098  Sum_probs=46.0

Q ss_pred             hhcCCCEEEEEecc-ccHHHHHHHhhCCCC--------Cc----------------------cCCCCceeEEEEcCCccc
Q 032292           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPED--------GQ----------------------SENEGSFDYAFVDADKDN   64 (143)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~t~~la~~~~~~--------~~----------------------~~~~~~fD~v~~d~~~~~   64 (143)
                      ...+.++||-+|+| .|..++.+|+..+..        .+                      ....+.||.|+.... ..
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~-~~  102 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS-SL  102 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS-CS
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEec-CC
Confidence            45567899999998 678888888876531        11                      123467998875422 11


Q ss_pred             hHHHHHHHHhcccCCeEEEEe
Q 032292           65 YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....++.+.+.|+++|.+++-
T Consensus       103 ~~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2         103 TDIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             TTCCTTTGGGGEEEEEEEEEC
T ss_pred             ccchHHHHHHHhhccceEEEe
Confidence            222355678999999999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.041  Score=36.19  Aligned_cols=68  Identities=13%  Similarity=0.025  Sum_probs=45.5

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc-----------------------c--------------CCCCceeEEE
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-----------------------S--------------ENEGSFDYAF   57 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~-----------------------~--------------~~~~~fD~v~   57 (143)
                      ...+.++||-+|+|. |..++.+++..+....                       .              .....+|+||
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi  102 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI  102 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence            334668999999965 5677778888764211                       0              0123578877


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEec
Q 032292           58 VDADKDNYCNYHERLMKLLKVGGIAVYDN   86 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~gG~li~d~   86 (143)
                      -....   ...++.+.+++++||.+++-.
T Consensus       103 d~~G~---~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         103 ECTGA---EASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             ECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             eccCC---chhHHHHHHHhcCCCEEEEEe
Confidence            54332   456788899999999998743

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.022  Score=42.01  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=50.5

Q ss_pred             CcChHHHHHHHHHH----hhcCCCEEEEEeccccHHHHHHHhhCCC-CCc------------------------------
Q 032292            2 LLLTIHGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQ------------------------------   46 (143)
Q Consensus         2 ~~~~~~~~~l~~l~----~~~~~~~vLeiG~g~G~~t~~la~~~~~-~~~------------------------------   46 (143)
                      |+.+...+.|...+    ...+..+|||+-||+|..|+.||+.... -+.                              
T Consensus       191 Q~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~  270 (358)
T d1uwva2         191 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLE  270 (358)
T ss_dssp             CSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred             ccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchh
Confidence            45555555544433    3346789999999999999999986542 000                              


Q ss_pred             ------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           47 ------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        47 ------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                            .....+||+|++|-.-....+.++.+.+ ++|.-++.+
T Consensus       271 ~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~-~~~~~ivYV  313 (358)
T d1uwva2         271 EDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYV  313 (358)
T ss_dssp             SCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEE
T ss_pred             hhhhhhhhhhccCceEEeCCCCccHHHHHHHHHH-cCCCEEEEE
Confidence                  1124679999999643223345555554 356555544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.92  E-value=0.021  Score=38.07  Aligned_cols=67  Identities=13%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc--------------------------------------cCCCCceeEE
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ--------------------------------------SENEGSFDYA   56 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~--------------------------------------~~~~~~fD~v   56 (143)
                      +..+.++||-+|+|. |..++.+|+..+..-.                                      ......+|+|
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv  104 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFI  104 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence            344568999999984 7788888988764110                                      0112348988


Q ss_pred             EEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           57 FVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        57 ~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |-....   ...++.+.+.|++||.+++-
T Consensus       105 id~vG~---~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2         105 LEATGD---SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             EECSSC---TTHHHHHHHHEEEEEEEEEC
T ss_pred             eecCCc---hhHHHHHHHHhcCCCEEEEE
Confidence            744322   33567888999999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.91  E-value=0.042  Score=37.30  Aligned_cols=74  Identities=15%  Similarity=0.069  Sum_probs=51.3

Q ss_pred             HHHhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------c------------CCCCceeE
Q 032292           13 MLLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------S------------ENEGSFDY   55 (143)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------~------------~~~~~fD~   55 (143)
                      ..+...+.++||-+|||. |..++.+|+.... .+                        +            .....+|.
T Consensus        19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~   97 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC   97 (195)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred             HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEE
Confidence            346677889999999998 7788888887653 22                        0            11345899


Q ss_pred             EEEcCCcc------------chHHHHHHHHhcccCCeEEEEecc
Q 032292           56 AFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNT   87 (143)
Q Consensus        56 v~~d~~~~------------~~~~~~~~~~~~L~~gG~li~d~~   87 (143)
                      +|-.....            .-...++.+.+.++|||.+++-.+
T Consensus        98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            88432211            124578999999999999987544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.89  E-value=0.024  Score=37.92  Aligned_cols=68  Identities=13%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEE
Q 032292           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~   57 (143)
                      +...+.++||-+|||. |..++.+++.......                                    ....+.+|+||
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vi  103 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSL  103 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEE
Confidence            3455678999999998 8999999999864111                                    01134578887


Q ss_pred             EcCCccchHHHHHHHHhcccCC-eEEEEe
Q 032292           58 VDADKDNYCNYHERLMKLLKVG-GIAVYD   85 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~g-G~li~d   85 (143)
                      -...   ....++...+.+++| |.+++-
T Consensus       104 e~~G---~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2         104 DCAG---TAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             ESSC---CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             Eecc---cchHHHHHHHHhhcCCeEEEec
Confidence            5433   255688899999996 998873

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.74  E-value=0.021  Score=37.92  Aligned_cols=67  Identities=16%  Similarity=0.151  Sum_probs=45.3

Q ss_pred             hhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcC
Q 032292           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDA   60 (143)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~   60 (143)
                      +..+.++||-+|+|. |..++.+++..+..-.                                  ...++.||.||-..
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~  104 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST  104 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence            455678999999974 4566777777653100                                  11235699988654


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..   ...++.+.+.++++|.+++-
T Consensus       105 G~---~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2         105 GS---PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             CC---HHHHHHHHHTEEEEEEEEEC
T ss_pred             Cc---HHHHHHHHhcccCceEEEEE
Confidence            32   45677889999999999763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.017  Score=38.34  Aligned_cols=66  Identities=14%  Similarity=0.018  Sum_probs=45.9

Q ss_pred             HhhcCCCEEEEEec--cccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEE
Q 032292           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~   58 (143)
                      ++..+.++||-.|+  +.|..++.+|+..+....                                  ....+.+|+|+-
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d  103 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIE  103 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred             hCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEee
Confidence            34457789999996  677888889988753100                                  112456898774


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEE
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ...    ...++...+.|+|+|.++.
T Consensus       104 ~~g----~~~~~~~~~~l~~~G~iv~  125 (174)
T d1yb5a2         104 MLA----NVNLSKDLSLLSHGGRVIV  125 (174)
T ss_dssp             SCH----HHHHHHHHHHEEEEEEEEE
T ss_pred             ccc----HHHHHHHHhccCCCCEEEE
Confidence            332    2467888899999999986

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.13  E-value=0.078  Score=35.74  Aligned_cols=72  Identities=13%  Similarity=0.061  Sum_probs=51.6

Q ss_pred             HHHHHHhhcCCCEEEEEeccccHHHHHHHhhCCCCCc-------------------------------------cCCCCc
Q 032292           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-------------------------------------SENEGS   52 (143)
Q Consensus        10 ~l~~l~~~~~~~~vLeiG~g~G~~t~~la~~~~~~~~-------------------------------------~~~~~~   52 (143)
                      ++..| ...+...++|..+|.|..+..+.+..   ++                                     ....++
T Consensus        10 vl~~l-~~~~g~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~   85 (182)
T d1wg8a2          10 ALDLL-AVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER   85 (182)
T ss_dssp             HHHHH-TCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             HHHhc-CCCCCCEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence            34444 34577899999999998888887752   33                                     123478


Q ss_pred             eeEEEEcCCccch------------HHHHHHHHhcccCCeEEEEe
Q 032292           53 FDYAFVDADKDNY------------CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        53 fD~v~~d~~~~~~------------~~~~~~~~~~L~~gG~li~d   85 (143)
                      +|.|+.|.....+            ...++.....|++||.+++-
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii  130 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI  130 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence            9999999754322            23577788999999999873

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.081  Score=34.60  Aligned_cols=68  Identities=18%  Similarity=0.147  Sum_probs=46.8

Q ss_pred             HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCC--------c---------------------cCCCCceeEEEEcCCccc
Q 032292           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDG--------Q---------------------SENEGSFDYAFVDADKDN   64 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~--------~---------------------~~~~~~fD~v~~d~~~~~   64 (143)
                      +...+.++||-+|+|. |..++.+|+..+..-        +                     ....+.+|.++-......
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~  105 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH  105 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch
Confidence            4566779999999874 677888888875310        0                     123457999886544322


Q ss_pred             hHHHHHHHHhcccCCeEEEEe
Q 032292           65 YCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        65 ~~~~~~~~~~~L~~gG~li~d   85 (143)
                         .++...+.++++|.+++-
T Consensus       106 ---~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         106 ---NLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             ---CHHHHHTTEEEEEEEEEC
T ss_pred             ---hHHHHHHHHhcCCEEEEe
Confidence               355778999999999863

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.91  E-value=0.06  Score=35.19  Aligned_cols=67  Identities=15%  Similarity=0.010  Sum_probs=44.5

Q ss_pred             hhcCCCEEEEEec--cccHHHHHHHhhCCCCCc-----------------------------------cCCCCceeEEEE
Q 032292           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQ-----------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~~-----------------------------------~~~~~~fD~v~~   58 (143)
                      ...+.++||-+|+  +.|..++.+++.......                                   ....+.||+|+-
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid  103 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVID  103 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhc
Confidence            4556789999996  366777777776542100                                   112356998775


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ....   ...++.+.+.++|||.+++-
T Consensus       104 ~~g~---~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         104 LNNS---EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             SCCC---HHHHTTGGGGEEEEEEEEEC
T ss_pred             cccc---chHHHhhhhhcccCCEEEEe
Confidence            4332   44567788999999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.81  E-value=0.078  Score=34.47  Aligned_cols=68  Identities=12%  Similarity=0.022  Sum_probs=43.4

Q ss_pred             HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------cC----------CCCceeEEEEcCC
Q 032292           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------SE----------NEGSFDYAFVDAD   61 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~~----------~~~~fD~v~~d~~   61 (143)
                      +...+.++||-+|+|. |..++.+++.....-.                      ..          ....+|.++.+..
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~  102 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV  102 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc
Confidence            4566778999999874 6777788888753100                      00          0122444444433


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEe
Q 032292           62 KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .   ...++.+.+.|++||.+++-
T Consensus       103 ~---~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2         103 S---NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             C---HHHHHHHHTTEEEEEEEEEC
T ss_pred             c---chHHHHHHHHhcCCcEEEEE
Confidence            2   34677889999999999863

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.66  E-value=0.18  Score=32.97  Aligned_cols=66  Identities=12%  Similarity=-0.064  Sum_probs=43.8

Q ss_pred             hcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEEcCC
Q 032292           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFVDAD   61 (143)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~d~~   61 (143)
                      ..+.++||-+|+|. |..++.++++....-.                                  ......+|.||-...
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g  109 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG  109 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence            35668999999875 4566677776543110                                  112345898885543


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEe
Q 032292           62 KDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        62 ~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .   ...++..++.|++||.+++-
T Consensus       110 ~---~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         110 S---QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             C---HHHHHHGGGGEEEEEEEEEC
T ss_pred             c---chHHHHHHHHHhCCCEEEEE
Confidence            2   34578889999999999863

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.37  E-value=0.051  Score=35.86  Aligned_cols=66  Identities=15%  Similarity=0.047  Sum_probs=44.6

Q ss_pred             HhhcCCCEEEEEe--ccccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEE
Q 032292           15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        15 ~~~~~~~~vLeiG--~g~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~   58 (143)
                      ++..+.++||-.|  .+.|..++.+|+.......                                  ......||+||-
T Consensus        21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d  100 (183)
T d1pqwa_          21 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLN  100 (183)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred             hCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEe
Confidence            3445568899877  4667788888887653100                                  112456999985


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEE
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ...    .+.++.+++.|+++|.++.
T Consensus       101 ~~g----~~~~~~~~~~l~~~G~~v~  122 (183)
T d1pqwa_         101 SLA----GEAIQRGVQILAPGGRFIE  122 (183)
T ss_dssp             CCC----THHHHHHHHTEEEEEEEEE
T ss_pred             ccc----chHHHHHHHHhcCCCEEEE
Confidence            443    2356788899999999986

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.46  E-value=0.11  Score=33.80  Aligned_cols=33  Identities=12%  Similarity=0.181  Sum_probs=26.3

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li   83 (143)
                      ...|+|++......+.+.++++.++++++.+++
T Consensus        61 ~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          61 FSPDFVMLSSPVRTFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             TCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             cccccccccCCchhhhhhhhhhhcccccccccc
Confidence            467999998876677888889889998876654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.28  E-value=0.15  Score=32.95  Aligned_cols=69  Identities=16%  Similarity=0.067  Sum_probs=43.8

Q ss_pred             HHhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc----------------------c----------CCCCceeEEEEcC
Q 032292           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ----------------------S----------ENEGSFDYAFVDA   60 (143)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~----------------------~----------~~~~~fD~v~~d~   60 (143)
                      .+...+.++||-.|+|. |..++.+++.......                      .          .....+|.++.+.
T Consensus        22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  101 (168)
T d1rjwa2          22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTA  101 (168)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred             HhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeec
Confidence            34556778999999875 5666777777653100                      0          0012345555554


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEe
Q 032292           61 DKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        61 ~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      ..   ...++...+.|+++|.+++-
T Consensus       102 ~~---~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2         102 VS---KPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             CC---HHHHHHHHHHEEEEEEEEEC
T ss_pred             CC---HHHHHHHHHHhccCCceEec
Confidence            32   45678889999999999874

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.74  E-value=0.18  Score=36.80  Aligned_cols=23  Identities=9%  Similarity=-0.042  Sum_probs=19.8

Q ss_pred             CCCEEEEEeccccHHHHHHHhhC
Q 032292           19 NAKKTIEIGVFTGYSLLLTALTI   41 (143)
Q Consensus        19 ~~~~vLeiG~g~G~~t~~la~~~   41 (143)
                      ....|||||.|.|..|..|.+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~   65 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKY   65 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC
Confidence            35689999999999999998763

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=90.50  E-value=0.13  Score=32.94  Aligned_cols=63  Identities=19%  Similarity=0.055  Sum_probs=47.5

Q ss_pred             CCEEEEEeccccHHHHHHHhhCCCCCc-------------cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292           20 AKKTIEIGVFTGYSLLLTALTIPEDGQ-------------SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        20 ~~~vLeiG~g~G~~t~~la~~~~~~~~-------------~~~~~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li   83 (143)
                      -++|.=|| |.|..+.+||+.+...+.             .......|++++..........+..+.+.+++|.+++
T Consensus         9 ~~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iii   84 (152)
T d2pv7a2           9 IHKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLA   84 (152)
T ss_dssp             CCCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEE
T ss_pred             CCeEEEEc-CCCHHHHHHHHHHHHcCCCcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEE
Confidence            46899998 468999999998865444             1113567888887777777888889999999988665

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.11  Score=33.43  Aligned_cols=34  Identities=15%  Similarity=0.057  Sum_probs=27.5

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      +.+|+||+.....+....++.+.+++.++..++.
T Consensus        62 ~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          62 ATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             HTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             cccceEEEeecccchHHHHHhhccccCcccEEee
Confidence            5789999987666677788899999999886654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.05  E-value=0.18  Score=33.05  Aligned_cols=65  Identities=18%  Similarity=0.204  Sum_probs=43.7

Q ss_pred             HhhcCCCEEEEEec--cccHHHHHHHhhCCCCC--------c---------------------cCCCCceeEEEEcCCcc
Q 032292           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDG--------Q---------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~t~~la~~~~~~~--------~---------------------~~~~~~fD~v~~d~~~~   63 (143)
                      +...+.++||-.|.  +.|..++.+|+..+..-        +                     ....+.+|+|| |+...
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~-d~~G~  101 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVL-EVRGK  101 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEE-ECSCT
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccc-cccch
Confidence            34567789999884  44678888998875310        0                     01235699886 44322


Q ss_pred             chHHHHHHHHhcccCCeEEEE
Q 032292           64 NYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~   84 (143)
                          .++..++.|+++|.++.
T Consensus       102 ----~~~~~~~~l~~~G~~v~  118 (171)
T d1iz0a2         102 ----EVEESLGLLAHGGRLVY  118 (171)
T ss_dssp             ----THHHHHTTEEEEEEEEE
T ss_pred             ----hHHHHHHHHhcCCcEEE
Confidence                35678899999999976

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=87.59  E-value=0.33  Score=31.22  Aligned_cols=33  Identities=15%  Similarity=0.080  Sum_probs=26.2

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV   83 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li   83 (143)
                      ...|+|++........+.++++.+.++++.+++
T Consensus        56 ~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          56 QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             cccccccccCcHhhhhhhhhhhhhhccccccee
Confidence            578999987755566778888889988888774

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.37  E-value=0.58  Score=30.83  Aligned_cols=70  Identities=9%  Similarity=0.021  Sum_probs=47.2

Q ss_pred             HHHHHhhcCC--CEEEEEe--ccccHHHHHHHhhCCCCCc-----------------------------------cCCCC
Q 032292           11 MAMLLRLVNA--KKTIEIG--VFTGYSLLLTALTIPEDGQ-----------------------------------SENEG   51 (143)
Q Consensus        11 l~~l~~~~~~--~~vLeiG--~g~G~~t~~la~~~~~~~~-----------------------------------~~~~~   51 (143)
                      |....+.++.  +.||-.|  -|.|..++.+|+.++....                                   ....+
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~   99 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPG   99 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTT
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhcc
Confidence            3344444444  6799877  4678899999998864211                                   11245


Q ss_pred             ceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           52 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        52 ~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      .+|+|| |+..   -+.++..++.|+++|.++.
T Consensus       100 GvDvv~-D~vG---g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2         100 GVDVYF-DNVG---GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             CEEEEE-ESSC---HHHHHHHHTTEEEEEEEEE
T ss_pred             CceEEE-ecCC---chhHHHHhhhccccccEEE
Confidence            699987 4432   3457788999999999975

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.89  E-value=0.5  Score=31.24  Aligned_cols=64  Identities=9%  Similarity=0.075  Sum_probs=41.6

Q ss_pred             cCCCEEEEEeccc--cHHHHHHHhhCCCC--------Cc------------------------cCCCCceeEEEEcCCcc
Q 032292           18 VNAKKTIEIGVFT--GYSLLLTALTIPED--------GQ------------------------SENEGSFDYAFVDADKD   63 (143)
Q Consensus        18 ~~~~~vLeiG~g~--G~~t~~la~~~~~~--------~~------------------------~~~~~~fD~v~~d~~~~   63 (143)
                      .+.++||--|.+.  |..++.||+.....        .+                        ....+.+|+|+ |....
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vi-d~vgg  108 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAV-DPVGG  108 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEE-ECSTT
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEE-EcCCc
Confidence            3467899998644  45667788886531        11                        12346799766 43322


Q ss_pred             chHHHHHHHHhcccCCeEEEEe
Q 032292           64 NYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        64 ~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      .   .++...+.|++||.++.-
T Consensus       109 ~---~~~~~l~~l~~~Griv~~  127 (176)
T d1xa0a2         109 R---TLATVLSRMRYGGAVAVS  127 (176)
T ss_dssp             T---THHHHHHTEEEEEEEEEC
T ss_pred             h---hHHHHHHHhCCCceEEEe
Confidence            2   366788999999999863

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=85.91  E-value=0.4  Score=30.96  Aligned_cols=34  Identities=6%  Similarity=0.104  Sum_probs=27.6

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY   84 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~   84 (143)
                      ...|+|++..........++++.++|+++.+++.
T Consensus        71 ~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          71 KDADVILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            5689999876655667789999999999988764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.36  E-value=0.43  Score=30.95  Aligned_cols=67  Identities=12%  Similarity=0.037  Sum_probs=43.2

Q ss_pred             HhhcCCCEEEEEecc--ccHHHHHHHhhCCCCCc----------------------------------cCCCCceeEEEE
Q 032292           15 LRLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQ----------------------------------SENEGSFDYAFV   58 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g--~G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~v~~   58 (143)
                      +++.+.++||-.|.+  .|..++.+|+..+....                                  ......+|+|+ 
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~-  102 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVY-  102 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEE-
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEE-
Confidence            344567899998655  56778888887653100                                  11245688766 


Q ss_pred             cCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           59 DADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        59 d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      |+...+   .++...+.++++|.+++-
T Consensus       103 d~~g~~---~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2         103 DSVGRD---TWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             ECSCGG---GHHHHHHTEEEEEEEEEC
T ss_pred             eCccHH---HHHHHHHHHhcCCeeeec
Confidence            443232   456788999999988764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=83.41  E-value=0.62  Score=30.43  Aligned_cols=70  Identities=10%  Similarity=0.006  Sum_probs=46.2

Q ss_pred             HHHHhhcCCCEEEEEeccc--cHHHHHHHhhCCCCCc----------------------------------cCCCCceeE
Q 032292           12 AMLLRLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQ----------------------------------SENEGSFDY   55 (143)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~--G~~t~~la~~~~~~~~----------------------------------~~~~~~fD~   55 (143)
                      ...++.++.++||-.|.+.  |..++.+|+..+....                                  ....+.+|+
T Consensus        22 ~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~  101 (182)
T d1v3va2          22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDC  101 (182)
T ss_dssp             HTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred             HHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCce
Confidence            3344556778999888754  5667778887653100                                  113456898


Q ss_pred             EEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           56 AFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        56 v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      || |+.-   .+.++...+.|++||.++.-
T Consensus       102 v~-D~vG---~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2         102 YF-DNVG---GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             EE-ESSC---HHHHHHHGGGEEEEEEEEEC
T ss_pred             eE-EecC---chhhhhhhhhccCCCeEEee
Confidence            77 4332   34677889999999999863

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=83.37  E-value=1.2  Score=28.84  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=41.6

Q ss_pred             HhhcCCCEEEEEeccc-cHHHHHHHhhCCCCCc------------------------------------cCCCCceeEEE
Q 032292           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ------------------------------------SENEGSFDYAF   57 (143)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~t~~la~~~~~~~~------------------------------------~~~~~~fD~v~   57 (143)
                      +...+.++||-+|||. |..++.++++......                                    ....+.+|.||
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vi  102 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAV  102 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEE
Confidence            4456778999999975 4566667777653100                                    01124588888


Q ss_pred             EcCCccchHHHHHHHHhcccC-CeEEEEe
Q 032292           58 VDADKDNYCNYHERLMKLLKV-GGIAVYD   85 (143)
Q Consensus        58 ~d~~~~~~~~~~~~~~~~L~~-gG~li~d   85 (143)
                      -....   ...++.....+++ +|.+++-
T Consensus       103 d~~g~---~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2         103 ECAGR---IETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             ECSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             EcCCC---chHHHHHHHHHHHhcCceEEE
Confidence            65543   3455566666655 5887763

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=81.67  E-value=0.99  Score=29.63  Aligned_cols=31  Identities=13%  Similarity=0.165  Sum_probs=21.6

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 032292           51 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        51 ~~fD~v~~d~~~~~~~~~~~~~~~~L~~gG~li~d   85 (143)
                      +.+|+|| |+..   -..++...+.|+++|.++.-
T Consensus       106 ~~vdvv~-D~vg---~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2         106 GEAKLAL-NCVG---GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             CCEEEEE-ESSC---HHHHHHHHHTSCTTCEEEEC
T ss_pred             CCceEEE-ECCC---cchhhhhhhhhcCCcEEEEE
Confidence            4578877 4432   23456778999999999863

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=80.38  E-value=1.3  Score=28.76  Aligned_cols=62  Identities=11%  Similarity=0.030  Sum_probs=41.5

Q ss_pred             CCEEEEEec--cccHHHHHHHhhCCCC--------Cc------------------------cCCCCceeEEEEcCCccch
Q 032292           20 AKKTIEIGV--FTGYSLLLTALTIPED--------GQ------------------------SENEGSFDYAFVDADKDNY   65 (143)
Q Consensus        20 ~~~vLeiG~--g~G~~t~~la~~~~~~--------~~------------------------~~~~~~fD~v~~d~~~~~~   65 (143)
                      .+.||--|.  |.|..++.||+.+...        .+                        ....+.+|.|+-...    
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg----   99 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG----   99 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC----
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc----
Confidence            457888774  4567788889887531        11                        123467998874432    


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 032292           66 CNYHERLMKLLKVGGIAVYD   85 (143)
Q Consensus        66 ~~~~~~~~~~L~~gG~li~d   85 (143)
                      -..++..++.|+++|.+++-
T Consensus       100 g~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2         100 GKQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             THHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHhccCceEEEe
Confidence            23566889999999999864