Citrus Sinensis ID: 032296

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS
Secondary Structure (PSIPRED)
cEEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccEEEccEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccEHHHHEccccHHHHHHHHHHHHHHHHHcccccccEEEEcccEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLvgvdndenELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIvetsksnilsPIQLMEKMS
Flexible Loop (DISEMBL)
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLArteqqcsfvehrnYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVEtsksnilspiqlmekms
Low Complexity Region (SEG)
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS
Disordered region (IsUnstruct)
**IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK**************
Disordered Region (DISOPRED)
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLME***
Disordered Region (DISEMBL)
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS
Disordered Region (DISPRO)
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLME***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
O82201	143	AP-4 complex subunit sigm	yes	no	0.986	0.986	0.950	4e-76
Q9Y587	144	AP-4 complex subunit sigm	yes	no	0.986	0.979	0.553	2e-46
Q3ZBB6	144	AP-4 complex subunit sigm	yes	no	0.986	0.979	0.553	3e-46
Q9WVL1	144	AP-4 complex subunit sigm	yes	no	0.986	0.979	0.546	2e-45
Q54NZ4	139	AP-4 complex subunit sigm	yes	no	0.958	0.985	0.602	7e-44
Q9P7N2	162	AP-1 complex subunit sigm	yes	no	0.951	0.839	0.470	8e-36
Q9DB50	160	AP-1 complex subunit sigm	no	no	0.944	0.843	0.459	1e-32
Q3ZBS3	160	AP-1 complex subunit sigm	no	no	0.944	0.843	0.459	1e-32
P56377	157	AP-1 complex subunit sigm	no	no	0.944	0.859	0.459	1e-32
P61967	158	AP-1 complex subunit sigm	no	no	0.944	0.854	0.444	2e-31

>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=2 SV=1

 Score =  282 bits (722), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 134/141 (95%), Positives = 140/141 (99%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR +QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEK 141
           NGCIVETSK+NILSPIQLM+K
Sbjct: 121 NGCIVETSKANILSPIQLMDK 141

Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y587|AP4S1_HUMAN AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 118/141 (83%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE + + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKMS 143
           CIVET+++ IL+P+ +++KMS
Sbjct: 122 CIVETNRARILAPLLILDKMS 142

Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.

Homo sapiens (taxid: 9606)

>sp|Q3ZBB6|AP4S1_BOVIN AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1

 Score =  183 bits (465), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 118/141 (83%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE + + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKMS 143
           CIVET+++ IL+P+ +++KMS
Sbjct: 122 CIVETNRARILAPLLILDKMS 142

Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.

Bos taurus (taxid: 9913)

>sp|Q9WVL1|AP4S1_MOUSE AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 117/141 (82%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           I+F LMVNKQGQTRL++YYE + + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct: 62  YAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query: 123 CIVETSKSNILSPIQLMEKMS 143
           CIVET+++ IL+P+ +++K+S
Sbjct: 122 CIVETNRARILAPLLILDKLS 142

Subunit of novel type of clathrin- or non-clathrin-associated protein coat involved in targeting proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system.

Mus musculus (taxid: 10090)

>sp|Q54NZ4|AP4S_DICDI AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1 PE=3 SV=1

 Score =  175 bits (444), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 85/141 (60%), Positives = 111/141 (78%), Gaps = 4/141 (2%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           M I++ L+VN +G+TRL+QYYE +  EER A+E EI+RKCL+RTE QCSFVE+++YK++Y
Sbjct: 1   MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           R+YA+LFF+VGVD  ENELAILE IH  VE +D  F NV    IMF+L+KAHF+L+EMV 
Sbjct: 61  RKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVS 116

Query: 121 NGCIVETSKSNILSPIQLMEK 141
           NG IVE SK +IL  + L+ K
Sbjct: 117 NGDIVEISKQHILEFVNLLYK 137

Part of the AP-4 complex, an adaptor-related complex which might be implicated in vesicular transport between intracellular compartments appearing upon cell differentiation such as prespore vesicles (PSVs).

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vas2 PE=1 SV=1

 Score =  148 bits (374), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 105/136 (77%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           M I+F L+V++QG+ RLA+++  L+++ER  +  ++    + R  + C+FVE++  KIVY
Sbjct: 1   MSIKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+ G++ D+NEL ILE IH  VE +D++FGNVCELD++F+ EKA++++EE+++
Sbjct: 61  RRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLL 120

Query: 121 NGCIVETSKSNILSPI 136
            G + E+SK+N+LS +
Sbjct: 121 AGELQESSKTNVLSAV 136

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9DB50|AP1S2_MOUSE AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 101/135 (74%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           ++F+L+ ++QG+ RL ++Y  L+ +E++ +  E+V+  LAR  + CSF+E R+ KIVY+R
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F   +++ +NEL  LE IH  VE +D++FG+VCELDI+F+ EKA+F+L+E ++ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 123 CIVETSKSNILSPIQ 137
            + ETSK N+L  I+
Sbjct: 121 EVQETSKKNVLKAIE 135

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Mus musculus (taxid: 10090)

>sp|Q3ZBS3|AP1S2_BOVIN AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 101/135 (74%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           ++F+L+ ++QG+ RL ++Y  L+ +E++ +  E+V+  LAR  + CSF+E R+ KIVY+R
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F   +++ +NEL  LE IH  VE +D++FG+VCELDI+F+ EKA+F+L+E ++ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 123 CIVETSKSNILSPIQ 137
            + ETSK N+L  I+
Sbjct: 121 EVQETSKKNVLKAIE 135

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Bos taurus (taxid: 9913)

>sp|P56377|AP1S2_HUMAN AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 101/135 (74%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           ++F+L+ ++QG+ RL ++Y  L+ +E++ +  E+V+  LAR  + CSF+E R+ KIVY+R
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F   +++ +NEL  LE IH  VE +D++FG+VCELDI+F+ EKA+F+L+E ++ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 123 CIVETSKSNILSPIQ 137
            + ETSK N+L  I+
Sbjct: 121 EVQETSKKNVLKAIE 135

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Homo sapiens (taxid: 9606)

>sp|P61967|AP1S1_MOUSE AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 99/135 (73%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           +RF+L+ ++QG+ RL ++Y   + +ER+ +  E+++  LAR  + CSF+E R+ K+VY+R
Sbjct: 2   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F   ++  +NEL  LE IH  VE +D++FG+VCELDI+F+ EKA+F+L+E +M G
Sbjct: 62  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121

Query: 123 CIVETSKSNILSPIQ 137
            + +TSK ++L  I+
Sbjct: 122 DVQDTSKKSVLKAIE 136

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
224087999	143	predicted protein [Populus trichocarpa]	1.0	1.0	0.965	6e-76
255546257	143	AP-4 complex subunit sigma-1, putative [	1.0	1.0	0.958	2e-75
449435802	143	PREDICTED: AP-4 complex subunit sigma-li	1.0	1.0	0.979	2e-75
351722524	143	uncharacterized protein LOC100306047 [Gl	1.0	1.0	0.951	8e-75
15224841	143	AP-4 complex subunit sigma [Arabidopsis	0.986	0.986	0.950	3e-74
388515583	143	unknown [Lotus japonicus]	1.0	1.0	0.937	3e-73
225445033	143	PREDICTED: AP-4 complex subunit sigma [V	1.0	1.0	0.937	5e-73
357147723	143	PREDICTED: AP-4 complex subunit sigma-li	1.0	1.0	0.923	5e-73
388495128	143	unknown [Lotus japonicus]	1.0	1.0	0.923	1e-72
40253273	143	putative clathrin coat assembly protein	1.0	1.0	0.909	7e-72

>gi|224087999|ref|XP_002308286.1| predicted protein [Populus trichocarpa] gi|222854262|gb|EEE91809.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (737), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 138/143 (96%), Positives = 141/143 (98%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR +QQCSFVEHRNYKI+Y
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIIY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSKSNILSPIQLM+K S
Sbjct: 121 NGCIVETSKSNILSPIQLMDKTS 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546257|ref|XP_002514188.1| AP-4 complex subunit sigma-1, putative [Ricinus communis] gi|223546644|gb|EEF48142.1| AP-4 complex subunit sigma-1, putative [Ricinus communis]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/143 (95%), Positives = 141/143 (98%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR +QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSK+NIL+PIQLM+K S
Sbjct: 121 NGCIVETSKANILAPIQLMDKTS 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435802|ref|XP_004135683.1| PREDICTED: AP-4 complex subunit sigma-like [Cucumis sativus] gi|449489825|ref|XP_004158427.1| PREDICTED: AP-4 complex subunit sigma-like [Cucumis sativus]

 Score =  286 bits (731), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/143 (97%), Positives = 140/143 (97%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSKSNILSPIQLMEK S
Sbjct: 121 NGCIVETSKSNILSPIQLMEKSS 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722524|ref|NP_001236735.1| uncharacterized protein LOC100306047 [Glycine max] gi|356494887|ref|XP_003516313.1| PREDICTED: AP-4 complex subunit sigma-like [Glycine max] gi|255627383|gb|ACU14036.1| unknown [Glycine max]

 Score =  284 bits (727), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 136/143 (95%), Positives = 141/143 (98%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRF+LMVNKQGQTRLAQYYE+LTLEERRALEGEIVRKCLAR EQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD+DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDDDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSKSNIL+PIQLM+K S
Sbjct: 121 NGCIVETSKSNILTPIQLMDKTS 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224841|ref|NP_179569.1| AP-4 complex subunit sigma [Arabidopsis thaliana] gi|297836278|ref|XP_002886021.1| clathrin adaptor complex small chain family protein [Arabidopsis lyrata subsp. lyrata] gi|75100553|sp|O82201.1|AP4S_ARATH RecName: Full=AP-4 complex subunit sigma; AltName: Full=AP-4 adapter complex subunit sigma; AltName: Full=Adapter-related protein complex 4 subunit sigma; AltName: Full=Sigma subunit of AP-4; AltName: Full=Sigma4-adaptin gi|13877845|gb|AAK44000.1|AF370185_1 putative clathrin assembly protein [Arabidopsis thaliana] gi|3687239|gb|AAC62137.1| putative clathrin assembly protein [Arabidopsis thaliana] gi|16323510|gb|AAL15249.1| putative clathrin assembly protein [Arabidopsis thaliana] gi|21593846|gb|AAM65813.1| putative clathrin assembly protein [Arabidopsis thaliana] gi|297331861|gb|EFH62280.1| clathrin adaptor complex small chain family protein [Arabidopsis lyrata subsp. lyrata] gi|330251832|gb|AEC06926.1| AP-4 complex subunit sigma [Arabidopsis thaliana]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/141 (95%), Positives = 140/141 (99%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR +QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEK 141
           NGCIVETSK+NILSPIQLM+K
Sbjct: 121 NGCIVETSKANILSPIQLMDK 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515583|gb|AFK45853.1| unknown [Lotus japonicus]

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 134/143 (93%), Positives = 139/143 (97%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRF+LMVNKQGQTRLAQYYE+LTLEERRALE EIVRKCLAR E QCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTLEERRALEAEIVRKCLARNEHQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD +ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDENENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSKSNIL+PIQLM+KMS
Sbjct: 121 NGCIVETSKSNILTPIQLMDKMS 143

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445033|ref|XP_002283179.1| PREDICTED: AP-4 complex subunit sigma [Vitis vinifera]

 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 134/143 (93%), Positives = 138/143 (96%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRFILMVNKQGQTRLAQYYE+L LEERRALEGEIVRKCLAR EQQCSFVEHR YKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLNLEERRALEGEIVRKCLARNEQQCSFVEHRTYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDN ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNGENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSK+NIL+PIQLM+K S
Sbjct: 121 NGCIVETSKANILAPIQLMDKAS 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147723|ref|XP_003574458.1| PREDICTED: AP-4 complex subunit sigma-like [Brachypodium distachyon] gi|326501244|dbj|BAJ98853.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326523491|dbj|BAJ92916.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/143 (92%), Positives = 139/143 (97%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRF+L+VNKQGQTRLAQYYE L+L+ERRALEGEIVRKCLART+QQCSFVEHRNYK+VY
Sbjct: 1   MGIRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEK HFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSK NIL+PIQLMEK S
Sbjct: 121 NGCIVETSKQNILAPIQLMEKTS 143

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495128|gb|AFK35630.1| unknown [Lotus japonicus]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/143 (92%), Positives = 138/143 (96%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRF+LMVNKQGQTRLAQYYE+LT+EERRALEGEIVRKCLAR E QCSFVEHRNYKIVY
Sbjct: 1   MGIRFVLMVNKQGQTRLAQYYEYLTIEERRALEGEIVRKCLARNEHQCSFVEHRNYKIVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVD DENELAILEFIHLLVETMDRHFGNVCELDIMFHLEK HFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDADENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSK+NIL+PIQLM+K S
Sbjct: 121 NGCIVETSKANILAPIQLMDKAS 143

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40253273|dbj|BAD05209.1| putative clathrin coat assembly protein AP17 [Oryza sativa Japonica Group] gi|215769211|dbj|BAH01440.1| unnamed protein product [Oryza sativa Japonica Group] gi|218201101|gb|EEC83528.1| hypothetical protein OsI_29129 [Oryza sativa Indica Group] gi|222640497|gb|EEE68629.1| hypothetical protein OsJ_27194 [Oryza sativa Japonica Group]

 Score =  275 bits (702), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/143 (90%), Positives = 137/143 (95%)

Query: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           MGIRF+L VNKQGQTRLAQYYE L+++ERRALEGEIVRKCLART+QQCSFVEHRNYK+VY
Sbjct: 1   MGIRFVLFVNKQGQTRLAQYYEHLSIDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVY 60

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
           RRYASLFFLVGVDNDENELAILEFIHL VETMDRHFGNVCELDIMFHLEK HFMLEEMVM
Sbjct: 61  RRYASLFFLVGVDNDENELAILEFIHLFVETMDRHFGNVCELDIMFHLEKVHFMLEEMVM 120

Query: 121 NGCIVETSKSNILSPIQLMEKMS 143
           NGCIVETSK NIL+PIQLMEK S
Sbjct: 121 NGCIVETSKQNILAPIQLMEKTS 143

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2051905	143	AT2G19790 [Arabidopsis thalian	0.986	0.986	0.950	8.9e-70
GENEDB_PFALCIPARUM|PFD1090c	146	PFD1090c "clathrin assembly pr	0.986	0.965	0.584	9.1e-45
UNIPROTKB|Q8IFN5	146	PFD1090c "Clathrin assembly pr	0.986	0.965	0.584	9.1e-45
UNIPROTKB|Q9Y587	144	AP4S1 "AP-4 complex subunit si	0.986	0.979	0.553	1.7e-43
UNIPROTKB|F1SHF5	144	AP4S1 "Uncharacterized protein	0.986	0.979	0.553	1.7e-43
UNIPROTKB|Q3ZBB6	144	AP4S1 "AP-4 complex subunit si	0.986	0.979	0.553	2.8e-43
RGD|1311990	144	Ap4s1 "adaptor-related protein	0.986	0.979	0.546	1.5e-42
MGI|MGI:1337065	144	Ap4s1 "adaptor-related protein	0.986	0.979	0.546	2.5e-42
UNIPROTKB|J3KNK4	144	AP4S1 "AP-4 complex subunit si	0.986	0.979	0.531	1.7e-41
UNIPROTKB|E1C054	144	AP4S1 "Uncharacterized protein	0.986	0.979	0.510	3.6e-41

TAIR|locus:2051905 AT2G19790 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 134/141 (95%), Positives = 140/141 (99%)

Query:     1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
             MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR +QQCSFVEHRNYKIVY
Sbjct:     1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query:    61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVM 120
             RRYASLFF+VGVD+DENELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVM
Sbjct:    61 RRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVM 120

Query:   121 NGCIVETSKSNILSPIQLMEK 141
             NGCIVETSK+NILSPIQLM+K
Sbjct:   121 NGCIVETSKANILSPIQLMDK 141

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0006301 "postreplication repair" evidence=RCA

GENEDB_PFALCIPARUM|PFD1090c PFD1090c "clathrin assembly protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 83/142 (58%), Positives = 118/142 (83%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I F+LMVNKQGQTRL+QYY  L++EE+  LEGE++RKCL+R + QCSF+++R YKI+YRR
Sbjct:     2 IEFLLMVNKQGQTRLSQYYNHLSIEEKTILEGELIRKCLSRVDYQCSFLQYREYKIIYRR 61

Query:    63 YASLFFLVGV-DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMN 121
             YASL+ +VGV D D NE AILE IH ++E +D+++ NVCELDIMF+++K HF+++E++ N
Sbjct:    62 YASLYLIVGVSDQDVNEFAILEMIHNIIEILDKYYENVCELDIMFNIDKTHFIIDEIICN 121

Query:   122 GCIVETSKSNILSPIQLMEKMS 143
             G I + +K+N+L PI LM+K+S
Sbjct:   122 GEICDMNKTNVLRPILLMDKVS 143

GO:0030133 "transport vesicle" evidence=ISS

GO:0030141 "secretory granule" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

UNIPROTKB|Q8IFN5 PFD1090c "Clathrin assembly protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 83/142 (58%), Positives = 118/142 (83%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I F+LMVNKQGQTRL+QYY  L++EE+  LEGE++RKCL+R + QCSF+++R YKI+YRR
Sbjct:     2 IEFLLMVNKQGQTRLSQYYNHLSIEEKTILEGELIRKCLSRVDYQCSFLQYREYKIIYRR 61

Query:    63 YASLFFLVGV-DNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMN 121
             YASL+ +VGV D D NE AILE IH ++E +D+++ NVCELDIMF+++K HF+++E++ N
Sbjct:    62 YASLYLIVGVSDQDVNEFAILEMIHNIIEILDKYYENVCELDIMFNIDKTHFIIDEIICN 121

Query:   122 GCIVETSKSNILSPIQLMEKMS 143
             G I + +K+N+L PI LM+K+S
Sbjct:   122 GEICDMNKTNVLRPILLMDKVS 143

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030133 "transport vesicle" evidence=ISS

GO:0030141 "secretory granule" evidence=ISS

UNIPROTKB|Q9Y587 AP4S1 "AP-4 complex subunit sigma-1" [Homo sapiens (taxid:9606)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 78/141 (55%), Positives = 118/141 (83%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I+F LMVNKQGQTRL++YYE + + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct:     2 IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query:    63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
             YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct:    62 YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query:   123 CIVETSKSNILSPIQLMEKMS 143
             CIVET+++ IL+P+ +++KMS
Sbjct:   122 CIVETNRARILAPLLILDKMS 142

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005215 "transporter activity" evidence=TAS

UNIPROTKB|F1SHF5 AP4S1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 78/141 (55%), Positives = 118/141 (83%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I+F LMVNKQGQTRL++YYE + + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct:     2 IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query:    63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
             YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct:    62 YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query:   123 CIVETSKSNILSPIQLMEKMS 143
             CIVET+++ IL+P+ +++KMS
Sbjct:   122 CIVETNRARILAPLLILDKMS 142

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|Q3ZBB6 AP4S1 "AP-4 complex subunit sigma-1" [Bos taurus (taxid:9913)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 78/141 (55%), Positives = 118/141 (83%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I+F LMVNKQGQTRL++YYE + + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct:     2 IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query:    63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
             YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct:    62 YAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query:   123 CIVETSKSNILSPIQLMEKMS 143
             CIVET+++ IL+P+ +++KMS
Sbjct:   122 CIVETNRARILAPLLILDKMS 142

GO:0005905 "coated pit" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

RGD|1311990 Ap4s1 "adaptor-related protein complex 4, sigma 1 subunit" [Rattus norvegicus (taxid:10116)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 77/141 (54%), Positives = 117/141 (82%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I+F LMVN+QGQTRL++YYE + + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct:     2 IKFFLMVNRQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query:    63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
             YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct:    62 YAALFVVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query:   123 CIVETSKSNILSPIQLMEKMS 143
             CIVET+++ IL+P+ +++KMS
Sbjct:   122 CIVETNRARILAPLLILDKMS 142

GO:0008565 "protein transporter activity" evidence=IEA

MGI|MGI:1337065 Ap4s1 "adaptor-related protein complex AP-4, sigma 1" [Mus musculus (taxid:10090)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 77/141 (54%), Positives = 117/141 (82%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I+F LMVNKQGQTRL++YYE + + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct:     2 IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query:    63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
             YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NG
Sbjct:    62 YAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNG 121

Query:   123 CIVETSKSNILSPIQLMEKMS 143
             CIVET+++ IL+P+ +++K+S
Sbjct:   122 CIVETNRARILAPLLILDKLS 142

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=TAS

GO:0005905 "coated pit" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

UNIPROTKB|J3KNK4 AP4S1 "AP-4 complex subunit sigma-1" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 75/141 (53%), Positives = 116/141 (82%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I+F LMVNKQGQTRL++YYE + + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct:     2 IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query:    63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
             YA+LF +VGV++ ENE+AI EFIH  VE +D +F  V +  IMF+L+K H +L+EMV+NG
Sbjct:    62 YAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVVKGHIMFNLDKVHIILDEMVLNG 121

Query:   123 CIVETSKSNILSPIQLMEKMS 143
             CIVET+++ IL+P+ +++KMS
Sbjct:   122 CIVETNRARILAPLLILDKMS 142

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|E1C054 AP4S1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 72/141 (51%), Positives = 116/141 (82%)

Query:     3 IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
             I+F LMVNKQGQTRL++YYE + + +R  LE E+++ CL+R++ QCSF+E++++K++YR+
Sbjct:     2 IKFFLMVNKQGQTRLSRYYEHIEIHKRTMLEAEVIKHCLSRSKDQCSFIEYKDFKLIYRQ 61

Query:    63 YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
             YA+LF +VG++  ENE+A+ E IH  VE +D++F  V ELDIMF+L++ H +L+EMV+NG
Sbjct:    62 YAALFVVVGINETENEMAVYELIHNFVEVLDKYFSRVSELDIMFNLDRVHIILDEMVLNG 121

Query:   123 CIVETSKSNILSPIQLMEKMS 143
             CIVET+ + IL+P+ +++K++
Sbjct:   122 CIVETNPNRILAPLFVLDKVA 142

GO:0008565 "protein transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82201	AP4S_ARATH	No assigned EC number	0.9503	0.9860	0.9860	yes	no
Q9WVL1	AP4S1_MOUSE	No assigned EC number	0.5460	0.9860	0.9791	yes	no
Q9Y587	AP4S1_HUMAN	No assigned EC number	0.5531	0.9860	0.9791	yes	no
Q9P7N2	AP1S1_SCHPO	No assigned EC number	0.4705	0.9510	0.8395	yes	no
Q3ZBB6	AP4S1_BOVIN	No assigned EC number	0.5531	0.9860	0.9791	yes	no
Q54NZ4	AP4S_DICDI	No assigned EC number	0.6028	0.9580	0.9856	yes	no
P35181	AP1S1_YEAST	No assigned EC number	0.4154	0.9790	0.8974	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VI1998 hypothetical protein (143 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
COG5030	152	COG5030, APS2, Clathrin adaptor complex, small sub	2e-50
pfam01217	142	pfam01217, Clat_adaptor_s, Clathrin adaptor comple	8e-47

>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

 Score =  157 bits (399), Expect = 2e-50
 Identities = 64/141 (45%), Positives = 101/141 (71%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           I+F+L+ N+QG+ RL ++Y  ++  E+  L  +I     AR  ++ +F+E +N KIVYRR
Sbjct: 2   IKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+L+F+ GVDND+NEL ILE IH  VE +DR FGNVCELD++F+ +K + +L+EM++ G
Sbjct: 62  YATLYFVFGVDNDDNELIILELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGG 121

Query: 123 CIVETSKSNILSPIQLMEKMS 143
            I+E+SK+ +L  +  ++  S
Sbjct: 122 EIIESSKNEVLEHVYALDAES 142

Length = 152

>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain

 Score =  147 bits (374), Expect = 8e-47
 Identities = 63/140 (45%), Positives = 102/140 (72%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           I+ IL+ N+QG+ RLA++Y   +  E++ L  +I     AR  +  +F+E  + K++Y+R
Sbjct: 2   IKAILIFNRQGKPRLAKWYTPYSDPEQQKLIEQIYALISARKPKMSNFIEFNDLKVIYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA+L+F+V VD+ +NEL ILE IH  VE++DR+FGNVCELD++F+ EK + +L+EMVM G
Sbjct: 62  YATLYFVVIVDDQDNELIILELIHRFVESLDRYFGNVCELDLIFNFEKVYLILDEMVMGG 121

Query: 123 CIVETSKSNILSPIQLMEKM 142
            I+ETSK+ +L  + L++++
Sbjct: 122 EILETSKNEVLHRVALLDEL 141

Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	100.0
KOG0936	182	consensus Clathrin adaptor complex, small subunit	100.0
KOG0934	145	consensus Clathrin adaptor complex, small subunit	100.0
KOG0935	143	consensus Clathrin adaptor complex, small subunit	100.0
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	100.0
KOG0938	446	consensus Adaptor complexes medium subunit family	99.96
KOG0937	424	consensus Adaptor complexes medium subunit family	99.91
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.9
KOG2740	418	consensus Clathrin-associated protein medium chain	99.89
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	99.16
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	97.55
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	97.16
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	95.62
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	95.12
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	94.79
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	91.27
KOG3369	199	consensus Transport protein particle (TRAPP) compl	91.25
KOG0997	523	consensus Uncharacterized conserved protein Sand [	90.32
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	89.07
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	84.59
KOG3368	140	consensus Transport protein particle (TRAPP) compl	81.44

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=6.7e-44  Score=257.92  Aligned_cols=141  Identities=40%  Similarity=0.676  Sum_probs=131.1

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI   81 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~   81 (143)
                      ||+|++|+|++|+++++|||++.+.++++++.+++.+.+.++++..+|++.++++++||+++++|||+++++.++||+++
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~   80 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL   80 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHH
Confidence            99999999999999999999988777778888888888777777789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhcc
Q 032296           82 LEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKM  142 (143)
Q Consensus        82 ~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~  142 (143)
                      +++|++++++|+.|||++||+++++||+++|++||||+|+|+|+|||++.|++|++++|++
T Consensus        81 ~e~l~~~v~~l~~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~~~  141 (141)
T PF01217_consen   81 LEFLHRLVEVLDDYFGNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQDSA  141 (141)
T ss_dssp             HHHHHHHHHHHHHHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCCC-
T ss_pred             HHHHHHhhhhhhhhhccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999974

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.9e-42  Score=244.57  Aligned_cols=141  Identities=45%  Similarity=0.800  Sum_probs=137.0

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI   81 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~   81 (143)
                      ||++++|+|++|++||.|||.+.+.++|.++.+++++.+++|++++|++.+..+.++|||||++|||+++++.++||+++
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl~i   80 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNELII   80 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcchH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhcc
Q 032296           82 LEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKM  142 (143)
Q Consensus        82 ~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~  142 (143)
                      ++++|.|+++|+.|||++||.++++||.++|.+||||+.+|.++||++..+++++...|++
T Consensus        81 L~lIh~FVE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~~lda~  141 (152)
T COG5030          81 LELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHVYALDAE  141 (152)
T ss_pred             HHHHHHHHHHHHHHhccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999877654

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.4e-39  Score=230.17  Aligned_cols=142  Identities=36%  Similarity=0.717  Sum_probs=136.6

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEe------CCEEEEEEEeCcEEEEEEEcCC
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEH------RNYKIVYRRYASLFFLVGVDND   75 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~vy~~~~~l~f~~~~~~~   75 (143)
                      ||+|++|+|++|++|+.|||++.+.+.|+++.+++|..+++|++..|++++.      .+.+++||+|+.|||+.++|+.
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD~s   80 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVDSS   80 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhccccccCCccceeehheeeeEEEEEEEcCC
Confidence            8999999999999999999999999999999999999999999999999863      3789999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhccC
Q 032296           76 ENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS  143 (143)
Q Consensus        76 ~nel~~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~~  143 (143)
                      |+||.+++++|.||++|+++|.++||.|+++|+++++.+|+|++.+|.++||+.+.|...+..|.+++
T Consensus        81 EsEL~iLDLIQvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~nkle  148 (182)
T KOG0936|consen   81 ESELGILDLIQVFVETLDKCFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQNKLE  148 (182)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999988763

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-39  Score=227.20  Aligned_cols=141  Identities=52%  Similarity=0.930  Sum_probs=137.4

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI   81 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~   81 (143)
                      ||+++++.|++|+++|+|||.+.+.++|++.++++.+.+++|+++.|++++++++++|||||++|||+++...++|||++
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL~~   80 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSVLARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNELAI   80 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHhCCcccccchhccCceehhhhhhhEEEEEEEecCCchhhH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhcc
Q 032296           82 LEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKM  142 (143)
Q Consensus        82 ~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~  142 (143)
                      +|++|+++++|+.|||+|||.|+++||.++|.+|||.+-+|-++||+.+...+.++++|-+
T Consensus        81 LE~IH~~vE~lDkYFg~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~~~i~~ad~l  141 (145)
T KOG0934|consen   81 LEFIHNYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVLKAIAQADLL  141 (145)
T ss_pred             HHHHHHHHHHHHHHhccceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999888754

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-37  Score=213.17  Aligned_cols=142  Identities=44%  Similarity=0.748  Sum_probs=131.9

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEE-EEeCcEEEEEEEcCCcCHHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY-RRYASLFFLVGVDNDENELA   80 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy-~~~~~l~f~~~~~~~~nel~   80 (143)
                      ||++++|.|++|+++++|||-+.+++++.+.+.++++.+..|+.+..++++..+.+++| |||++|||+.+++.-+||++
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDnela   80 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNELA   80 (143)
T ss_pred             CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCchHH
Confidence            89999999999999999999988777788899999999988887777767666666555 59999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhccC
Q 032296           81 ILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS  143 (143)
Q Consensus        81 ~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~~  143 (143)
                      .++-+|.||++|++||||+||.++.+||-+||.++|||+-+|.++||++..+++|+.+.++++
T Consensus        81 yLe~IHlFVEvLd~fF~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~L~~Le  143 (143)
T KOG0935|consen   81 YLEHIHLFVEVLDEFFHNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLMLQSLE  143 (143)
T ss_pred             HHHHHHHHHHHHHHHhccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999999874

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-32  Score=198.15  Aligned_cols=136  Identities=24%  Similarity=0.427  Sum_probs=126.3

Q ss_pred             ceEEEEEEeCCCCEEEEecCcC--CC-HHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEW--LT-LEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENE   78 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~ne   78 (143)
                      .++|++|+|++|+|+++|||.+  ++ -++|+.||+.+|+++.+   ....|..++|..+||+..-||+|++++..+|||
T Consensus         8 ~vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~k---t~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENE   84 (175)
T KOG3343|consen    8 TVKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSK---TESEILLLDGNTVVYKSVIDLHFYVVGSEEENE   84 (175)
T ss_pred             hhheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhccccc---ccceeEEecCcEEEEEecccEEEEEecCcchhH
Confidence            4789999999999999999985  33 67999999999999865   356788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc-cccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhh
Q 032296           79 LAILEFIHLLVETMDRHFG-NVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLME  140 (143)
Q Consensus        79 l~~~e~L~~~v~~l~~~f~-~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~  140 (143)
                      +++.++|+++.+++...++ ++.+..+++|++.+.+.+||++|+|.++||||+.|+.|++...
T Consensus        85 l~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~~  147 (175)
T KOG3343|consen   85 LMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALRP  147 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccCC
Confidence            9999999999999999996 7999999999999999999999999999999999999998653

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.5e-29  Score=201.24  Aligned_cols=134  Identities=17%  Similarity=0.170  Sum_probs=124.0

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHH-HhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRK-CLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELA   80 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~   80 (143)
                      ||+++||+|.+|++++.|.||..    -++-.-++||. ++......||++.+++++++|.|..+||+++++++|.|..+
T Consensus         1 misglfi~n~rGevlink~fr~d----lkrs~~diFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~   76 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDD----LKRSIVDIFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAA   76 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhh----hhhhHHHHHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCchhh
Confidence            89999999999999999999973    23446778885 66555678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhh
Q 032296           81 ILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLM  139 (143)
Q Consensus        81 ~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~  139 (143)
                      ++|||..+.+++.+|||..+|+.+++||..+|++||||+|+||||+|+|+.++..++++
T Consensus        77 v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~  135 (446)
T KOG0938|consen   77 VFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQK  135 (446)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999998865

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.9e-23  Score=172.09  Aligned_cols=135  Identities=12%  Similarity=0.219  Sum_probs=118.3

Q ss_pred             eEEEEEEeCCCCEEEEecCcC-CCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296            3 IRFILMVNKQGQTRLAQYYEW-LTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI   81 (143)
Q Consensus         3 I~~~~iln~~G~~il~k~Y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~   81 (143)
                      ++|+|++|.+|+++++|.||. .+.....+|..-++.+.  ..+...|++.++|..++|.++++||++++++.|.|+..+
T Consensus         1 ~sa~fild~~G~~lisr~yr~dv~~s~~~~F~~~l~~~e--~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v   78 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGDVPMSSTEKFFRKLFEKE--EGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAALV   78 (424)
T ss_pred             CceEEEEcCCCcEeEeecccccCChhhhhhHHHHHhhhc--ccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHHH
Confidence            579999999999999999996 33444444543222222  234578999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhh
Q 032296           82 LEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLM  139 (143)
Q Consensus        82 ~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~  139 (143)
                      +++|+++++++.+||+.+.|..+++||+++|++|||++|+||||+|+++.+.+.+++.
T Consensus        79 ~~~l~~~~~v~~~y~~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~  136 (424)
T KOG0937|consen   79 LSFLYAVADVFGDYLSELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQK  136 (424)
T ss_pred             HHHHHHHHHHHHHHhccCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999999998876

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3e-23  Score=150.32  Aligned_cols=134  Identities=13%  Similarity=0.253  Sum_probs=122.6

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCC-----------CHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEE
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWL-----------TLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLV   70 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~   70 (143)
                      .+.|++|+|++|+|++.|||.|+           +-++++.|++.+++++.+.   ...|+.+++..++|+++.|+.|+.
T Consensus         7 ~v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~---~~~Il~f~d~lV~~k~~~dv~~yi   83 (187)
T COG5541           7 DVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKD---RESILMFYDRLVMCKRLDDVLLYI   83 (187)
T ss_pred             eeeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcC---ccceeeEcceeeeeeeehhEEEEE
Confidence            47899999999999999999973           4467899999999998653   456788999999999999999999


Q ss_pred             EEcCCcCHHHHHHHHHHHHHHHHhhhccc-cHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhh
Q 032296           71 GVDNDENELAILEFIHLLVETMDRHFGNV-CELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQL  138 (143)
Q Consensus        71 ~~~~~~nel~~~e~L~~~v~~l~~~f~~v-~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~  138 (143)
                      ++.-++||.++.+.+..+-++|.-.++.. ++..+.+|++.+..++||.+|+|.++||+++.|++|++.
T Consensus        84 v~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~rv~K  152 (187)
T COG5541          84 VSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPK  152 (187)
T ss_pred             ecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHhCCC
Confidence            99999999999999999999999999864 677799999999999999999999999999999999875

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.5e-23  Score=168.99  Aligned_cols=135  Identities=19%  Similarity=0.206  Sum_probs=114.5

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhc--ccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLA--RTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENEL   79 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel   79 (143)
                      ||+++|+.|.+|+.+++|.+++...  -+..+..+|+.-.+  +.++.+|+...+.+.++-.-..+++|++++..+..||
T Consensus         1 mi~siflidtsg~l~lek~~~g~t~--~rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL   78 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGSTV--VRSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPL   78 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCcee--eeehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccCCCh
Confidence            8999999999999999999995211  13445555554322  4456777777777777665566899999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhh
Q 032296           80 AILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQL  138 (143)
Q Consensus        80 ~~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~  138 (143)
                      ++.|||+|+++++..|||+++|..|++|++.||++||||+|+|+|..|+|+.|++.|+.
T Consensus        79 ~~iefL~rv~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~p  137 (418)
T KOG2740|consen   79 MVIEFLHRVVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPP  137 (418)
T ss_pred             hHHHHHHHHHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999999999987753

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=6.5e-10  Score=92.44  Aligned_cols=136  Identities=17%  Similarity=0.241  Sum_probs=120.1

Q ss_pred             CceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHH
Q 032296            1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELA   80 (143)
Q Consensus         1 mmI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~   80 (143)
                      ||+-|.-+.+..|+.+++|.|+.++..+-..+..++...+.  ...+.-+++.+..++||....++|++.++..+.|-+-
T Consensus         1 Mvvlaa~i~t~~Gk~ivsRqf~~Msr~RIEgLl~aFpkLv~--~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIle   78 (512)
T KOG2635|consen    1 MVVLAASINTKTGKAIVSRQFREMSRSRIEGLLAAFPKLVS--AGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILE   78 (512)
T ss_pred             CeEEEEEEeecCCceeeehHhHhhhHHHHHHHHHHhHHhhc--cCCCccEEecccEEEEEEecccEEEEEEeccccchhh
Confidence            89999999999999999999999887766666666544443  2245678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhh
Q 032296           81 ILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQL  138 (143)
Q Consensus        81 ~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~  138 (143)
                      -++.|+.|..+...|+..+.|+.|.+|---+...+||++--||-...+-..|+..+.|
T Consensus        79 Dl~TL~Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eM  136 (512)
T KOG2635|consen   79 DLETLRLFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEM  136 (512)
T ss_pred             HHHHHHHHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhcc
Confidence            9999999999999999999999999999999999999999999888888777776654

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=97.55  E-value=0.0095  Score=45.23  Aligned_cols=80  Identities=14%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             CCEEEEEEEeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHHhhhccccH-HHHHhhHHHHHHHHHHHHhCcEEeecCHHHH
Q 032296           54 RNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCE-LDIMFHLEKAHFMLEEMVMNGCIVETSKSNI  132 (143)
Q Consensus        54 ~~~~~vy~~~~~l~f~~~~~~~~nel~~~e~L~~~v~~l~~~f~~v~e-~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i  132 (143)
                      +...++|+...++-|..+++..||-+.+-.+|..++..+.+.++.++. ..+..+-+.|..+|+..+=.|-.+=-+.+.+
T Consensus       102 ~~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~  181 (189)
T PF15001_consen  102 TPKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFV  181 (189)
T ss_pred             CCcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHH
Confidence            346788999999999999999999999999999999999999976544 6677799999999999999998887777665


Q ss_pred             H
Q 032296          133 L  133 (143)
Q Consensus       133 ~  133 (143)
                      +
T Consensus       182 k  182 (189)
T PF15001_consen  182 K  182 (189)
T ss_pred             H
Confidence            4

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=97.16  E-value=0.017  Score=48.71  Aligned_cols=90  Identities=12%  Similarity=0.187  Sum_probs=61.7

Q ss_pred             EEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhc--ccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296            4 RFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLA--RTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI   81 (143)
Q Consensus         4 ~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~   81 (143)
                      +-+||+++.||++++||   .+++.-..+..-+...+..  ..++.---+..+++++|+...+.|+++++++.+|++..+
T Consensus        12 kh~fIlS~AGKPIysr~---G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l   88 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRY---GDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQL   88 (415)
T ss_pred             CeEEEECCCCceeEEec---CChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHH
Confidence            46899999999999999   2233333333333222221  111222234568999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHhhh
Q 032296           82 LEFIHLLVETMDRHF   96 (143)
Q Consensus        82 ~e~L~~~v~~l~~~f   96 (143)
                      ..-|+.+...+-..+
T Consensus        89 ~~qL~~ly~qils~l  103 (415)
T PF03164_consen   89 RKQLDYLYSQILSIL  103 (415)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            877777666655554

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.62  E-value=0.18  Score=35.51  Aligned_cols=92  Identities=12%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             eEEEEEEeCCCCEEEEecCcCCCH-HHHHHHHHHHHHH----Hhcc--cCCCcceeEeCCEEEEEEEeCcEEEEEEEcCC
Q 032296            3 IRFILMVNKQGQTRLAQYYEWLTL-EERRALEGEIVRK----CLAR--TEQQCSFVEHRNYKIVYRRYASLFFLVGVDND   75 (143)
Q Consensus         3 I~~~~iln~~G~~il~k~Y~~~~~-~~~~~~~~~~~~~----~~~~--~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~   75 (143)
                      +.+++|-|++|=+++.=.....+. .-+..+... |..    +.+-  +.+..-+..++++.+++.....+++.++++.+
T Consensus        17 l~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~t-f~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~   95 (119)
T PF08923_consen   17 LQAIVITDRDGVPIAKVSSDSAPESAMRPSLLST-FAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSN   95 (119)
T ss_dssp             EEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCC-HHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETT
T ss_pred             eEEEEEECCCCcEEEEecCCCCcchhhhhHHHHH-HHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCC
Confidence            679999999999988755554322 111222222 222    2111  12334466789999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHhh
Q 032296           76 ENELAILEFIHLLVETMDRH   95 (143)
Q Consensus        76 ~nel~~~e~L~~~v~~l~~~   95 (143)
                      .|--.++++-+.+.+.+...
T Consensus        96 aN~G~il~l~~~L~~~l~~l  115 (119)
T PF08923_consen   96 ANTGLILSLEEELAPILNEL  115 (119)
T ss_dssp             S-HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHH
Confidence            99999999888887777643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=95.12  E-value=0.84  Score=32.92  Aligned_cols=93  Identities=15%  Similarity=0.162  Sum_probs=55.5

Q ss_pred             eEEEEEEeCCCCEEEEecCcCC--------CHHHHHHHHHHHHHH--H-hcccC--------CCc--ceeEeCCEEE-EE
Q 032296            3 IRFILMVNKQGQTRLAQYYEWL--------TLEERRALEGEIVRK--C-LARTE--------QQC--SFVEHRNYKI-VY   60 (143)
Q Consensus         3 I~~~~iln~~G~~il~k~Y~~~--------~~~~~~~~~~~~~~~--~-~~~~~--------~~~--~i~~~~~~~~-vy   60 (143)
                      |.+++|+|+.|.-+..|-|...        +..+++.+..-++..  + .+-++        ..+  .-++.+.+++ .|
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~   80 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF   80 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence            6899999999999999999853        234454544444432  1 11111        112  2345577776 45


Q ss_pred             EEeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHHhhh
Q 032296           61 RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF   96 (143)
Q Consensus        61 ~~~~~l~f~~~~~~~~nel~~~e~L~~~v~~l~~~f   96 (143)
                      ..-.++-|++++|.+.+. ..-++++.+.++.-+|-
T Consensus        81 eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV  115 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYV  115 (142)
T ss_dssp             E-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHH
T ss_pred             EcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHH
Confidence            567789999999999854 34556777778777775

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=94.79  E-value=0.62  Score=32.72  Aligned_cols=93  Identities=12%  Similarity=0.105  Sum_probs=57.1

Q ss_pred             CceEEEEEEeCCCCEEEEecCcCCCHHHH----HHH---HHHHHHHHhcc-c--C-CCcceeEeCCEE-EEEEEeCcEEE
Q 032296            1 MGIRFILMVNKQGQTRLAQYYEWLTLEER----RAL---EGEIVRKCLAR-T--E-QQCSFVEHRNYK-IVYRRYASLFF   68 (143)
Q Consensus         1 mmI~~~~iln~~G~~il~k~Y~~~~~~~~----~~~---~~~~~~~~~~~-~--~-~~~~i~~~~~~~-~vy~~~~~l~f   68 (143)
                      |.+.+++|+|++|-.++.|-+.....+--    --+   ...++....+. +  + ..--++..++.. .+|+...++-|
T Consensus         1 mave~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kF   80 (134)
T COG5122           1 MAVEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKF   80 (134)
T ss_pred             CceeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEE
Confidence            88999999999999999999964211100    000   11111111111 1  1 122345566655 57888899999


Q ss_pred             EEEE-cCCcCHHHHHHHHHHHHHHHHhhh
Q 032296           69 LVGV-DNDENELAILEFIHLLVETMDRHF   96 (143)
Q Consensus        69 ~~~~-~~~~nel~~~e~L~~~v~~l~~~f   96 (143)
                      ++++ +...|.++-   ++.++....+|-
T Consensus        81 V~~~~k~t~na~~q---l~kiY~lYsdYV  106 (134)
T COG5122          81 VFVAEKRTVNALFQ---LQKIYSLYSDYV  106 (134)
T ss_pred             EEEecCCchhHHHH---HHHHHHHHHHHh
Confidence            9999 556665544   667777777775

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=91.27  E-value=2.5  Score=27.15  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=41.7

Q ss_pred             eeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHHhhhc
Q 032296           50 FVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHFG   97 (143)
Q Consensus        50 i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~~e~L~~~v~~l~~~f~   97 (143)
                      .++.+++.+=|...+++.++|+++.+.+.-..+.||+.+.+-+..-++
T Consensus        18 s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~   65 (83)
T PF13774_consen   18 SYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG   65 (83)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence            466788888777789999999999999999999999999998888776

...

>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.25  E-value=5.2  Score=30.25  Aligned_cols=46  Identities=9%  Similarity=0.173  Sum_probs=35.9

Q ss_pred             ceeEeCCEE-EEEEEeCcEEEEEEEcCCcCHHHHHHHHHHHHHHHHhhh
Q 032296           49 SFVEHRNYK-IVYRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF   96 (143)
Q Consensus        49 ~i~~~~~~~-~vy~~~~~l~f~~~~~~~~nel~~~e~L~~~v~~l~~~f   96 (143)
                      .+++.+..+ .+|....++-|+++++.-.  -.+-.+|..+++...+|-
T Consensus       124 e~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYsDyv  170 (199)
T KOG3369|consen  124 EVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYSDYV  170 (199)
T ss_pred             EEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHHHHh
Confidence            455666655 4788888999999998776  466778999999988885

>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]

Probab=90.32  E-value=4.8  Score=34.89  Aligned_cols=78  Identities=10%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             EEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHH
Q 032296            5 FILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILE   83 (143)
Q Consensus         5 ~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~~e   83 (143)
                      -+||++..|+++++++=.......-......+..-....+..-+. +...|+++++-+.+-++++|++..+..+--+..
T Consensus       119 hifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q~~~~~i~s-i~a~g~k~vfl~kspl~LvA~s~t~~Sa~qL~~  196 (523)
T KOG0997|consen  119 HIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQVSGLAITS-IHAFGNKLVFLQKSPLLLVAVSRTSQSAAQLLQ  196 (523)
T ss_pred             eEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHhhCCceEEE-EEecCceEEEEecCcEEEEEEcccccCHHHHHH
Confidence            589999999999999965311100111111111111111112222 346899999999999999999998887665544

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.07  E-value=9.1  Score=29.73  Aligned_cols=94  Identities=16%  Similarity=0.252  Sum_probs=64.1

Q ss_pred             EEEEEEeCCCCEEEEecC---cC-CCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHH
Q 032296            4 RFILMVNKQGQTRLAQYY---EW-LTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENEL   79 (143)
Q Consensus         4 ~~~~iln~~G~~il~k~Y---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel   79 (143)
                      ...+.==.+|-++.+-.=   ++ .+..+.++=.+.++++....++..|. ++.+.+.|=|...+++.+.+.++.+.+--
T Consensus         4 ~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~S-ietg~f~fHfli~~~Vcylvicd~~yP~k   82 (216)
T KOG0862|consen    4 LTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCS-IETGPFVFHFLIESGVCYLVICDKSYPRK   82 (216)
T ss_pred             eEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccc-cccCCeEEEEEecCCEEEEEEecCCCcHH
Confidence            344444456666544322   12 23123333356667766443334444 45577888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcc
Q 032296           80 AILEFIHLLVETMDRHFGN   98 (143)
Q Consensus        80 ~~~e~L~~~v~~l~~~f~~   98 (143)
                      +++.+|+.+.+-+.+-+|.
T Consensus        83 LAF~YLedL~~EF~~~~~~  101 (216)
T KOG0862|consen   83 LAFSYLEDLAQEFDKSYGK  101 (216)
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            9999999999999998874

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.59  E-value=16  Score=28.12  Aligned_cols=87  Identities=16%  Similarity=0.293  Sum_probs=57.2

Q ss_pred             EEEeCCCCEEEEecCcCC-CHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHHHH
Q 032296            7 LMVNKQGQTRLAQYYEWL-TLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFI   85 (143)
Q Consensus         7 ~iln~~G~~il~k~Y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~~e~L   85 (143)
                      +=+=.+|-++|++|=... +.   ..+.+++-+++-.. ++.---..+|++.+=|.+-+++.++|+++.+..--.-+.||
T Consensus         5 Ys~VARGTvvLaeft~~~gNf---~sva~qiL~klp~~-~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL   80 (217)
T KOG0859|consen    5 YSFVARGTVILAEFTEFSGNF---SSIAAQILQKLPSS-SNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL   80 (217)
T ss_pred             EEEEecceEEEEeeeeccCCH---HHHHHHHHHhCCCC-CCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence            334478999999986531 11   12222222333111 11122346799999999999999999999998888888888


Q ss_pred             HHHHHHHHhhhc
Q 032296           86 HLLVETMDRHFG   97 (143)
Q Consensus        86 ~~~v~~l~~~f~   97 (143)
                      .++-+-+.+=+|
T Consensus        81 e~Ik~~F~k~YG   92 (217)
T KOG0859|consen   81 ERIKEDFKKRYG   92 (217)
T ss_pred             HHHHHHHHHHhc
Confidence            887776655554

>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.44  E-value=18  Score=26.14  Aligned_cols=88  Identities=15%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             CceEEEEEEeCCCCEEEEecCcC-----CCHHH-HHHHHHHHHHH---Hhccc--CCCcceeEe--CCEEEEE-EEeCcE
Q 032296            1 MGIRFILMVNKQGQTRLAQYYEW-----LTLEE-RRALEGEIVRK---CLART--EQQCSFVEH--RNYKIVY-RRYASL   66 (143)
Q Consensus         1 mmI~~~~iln~~G~~il~k~Y~~-----~~~~~-~~~~~~~~~~~---~~~~~--~~~~~i~~~--~~~~~vy-~~~~~l   66 (143)
                      |.|.++.|+|+.|.-++.+-|..     .++++ .+-.-.=+|..   +.+-+  +....+..+  ..++.-| -.-.+|
T Consensus         1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptgl   80 (140)
T KOG3368|consen    1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGL   80 (140)
T ss_pred             CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCc
Confidence            89999999999999998887752     23322 22222222321   22211  112223332  4455433 344589


Q ss_pred             EEEEEEcCCcCHHHHHHHHHHHHH
Q 032296           67 FFLVGVDNDENELAILEFIHLLVE   90 (143)
Q Consensus        67 ~f~~~~~~~~nel~~~e~L~~~v~   90 (143)
                      .|+..+|.+...  +=++||.++.
T Consensus        81 k~vl~Tdpk~~~--ir~vLq~IYs  102 (140)
T KOG3368|consen   81 KFVLNTDPKAGS--IRDVLQYIYS  102 (140)
T ss_pred             EEEEecCCCccc--HHHHHHHHHH
Confidence            999999988765  4577888777

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
1w63_Q	158	Ap1 Clathrin Adaptor Core Length = 158		2e-32
2vgl_S	142	Ap2 Clathrin Adaptor Core Length = 142		1e-27
3tjz_C	153	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-06
2hf6_A	149	Solution Structure Of Human Zeta-Cop Length = 149		2e-06

>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core Length = 158

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 99/135 (73%)
Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           +RF+L+ ++QG+ RL ++Y   + +ER+ +  E+++  LAR  + CSF+E R+ K+VY+R
Sbjct: 2   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61
Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F   ++  +NEL  LE IH  VE +D++FG+VCELDI+F+ EKA+F+L+E +M G
Sbjct: 62  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121
Query: 123 CIVETSKSNILSPIQ 137
            + +TSK ++L  I+
Sbjct: 122 DVQDTSKKSVLKAIE 136

>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core Length = 142

Iteration: 1
 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 94/140 (67%)
Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           IRFIL+ N+ G+TRLA++Y     +E++ L  E+      R  +  +FVE RN+KI+YRR
Sbjct: 2   IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61
Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA L+F + VD ++N LA LE IH  VE ++ +F NVCELD++F+  K + +++EM + G
Sbjct: 62  YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 123 CIVETSKSNILSPIQLMEKM 142
            I ETS++ +L  + +++ +
Sbjct: 122 EIRETSQTKVLKQLLMLQSL 141

>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 153

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 3   IRFILMVNKQGQTRLAQYYE--WLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           ++ IL+++  G    A+YY+  + +++E++A E  I  K   RT+ + + +E     +VY
Sbjct: 13  VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69
Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMV 119
           +    L+F V   + ENEL ++  ++ L +++ +    NV +  ++ ++E     ++E+V
Sbjct: 70  KSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129
Query: 120 MNGCIVETSKSNILSPIQL 138
             G I+E+    ++  + L
Sbjct: 130 DGGVILESDPQQVVHRVAL 148

>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop Length = 149

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 3   IRFILMVNKQGQTRLAQYYE--WLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           ++ IL+++  G    A+YY+  + +++E++A E  I  K   RT+ + + +E     +VY
Sbjct: 13  VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69
Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMV 119
           +    L+F V   + ENEL ++  ++ L +++ +    NV +  ++ ++E     ++E+V
Sbjct: 70  KSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129
Query: 120 MNGCIVETSKSNILSPIQL 138
             G I+E+    ++  + L
Sbjct: 130 DGGVILESDPQQVVHRVAL 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	2e-42
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	2e-40
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	2e-38
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	8e-15

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score =  136 bits (344), Expect = 2e-42
 Identities = 58/140 (41%), Positives = 94/140 (67%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           IRFIL+ N+ G+TRLA++Y     +E++ L  E+      R  +  +FVE RN+KI+YRR
Sbjct: 2   IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YA L+F + VD ++N LA LE IH  VE ++ +F NVCELD++F+  K + +++EM + G
Sbjct: 62  YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121

Query: 123 CIVETSKSNILSPIQLMEKM 142
            I ETS++ +L  + +++ +
Sbjct: 122 EIRETSQTKVLKQLLMLQSL 141

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score =  132 bits (332), Expect = 2e-40
 Identities = 60/141 (42%), Positives = 101/141 (71%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           +RF+L+ ++QG+ RL ++Y   + +ER+ +  E+++  LAR  + CSF+E R+ K+VY+R
Sbjct: 2   MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKR 61

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
           YASL+F   ++  +NEL  LE IH  VE +D++FG+VCELDI+F+ EKA+F+L+E +M G
Sbjct: 62  YASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGG 121

Query: 123 CIVETSKSNILSPIQLMEKMS 143
            + +TSK ++L  I+  + + 
Sbjct: 122 DVQDTSKKSVLKAIEQADLLQ 142

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score =  126 bits (318), Expect = 2e-38
 Identities = 33/142 (23%), Positives = 76/142 (53%), Gaps = 6/142 (4%)

Query: 3   IRFILMVNKQGQTRLAQYYE--WLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVY 60
           ++ IL+++  G    A+YY+  + +++E++A E  I  K   RT+ + + +E     +VY
Sbjct: 13  VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HRTDSEIALLE--GLTVVY 69

Query: 61  RRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMV 119
           +    L+F V   + ENEL ++  ++ L +++ +    NV +  ++ ++E     ++E+V
Sbjct: 70  KSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIV 129

Query: 120 MNGCIVETSKSNILSPIQLMEK 141
             G I+E+    ++  + L  +
Sbjct: 130 DGGVILESDPQQVVHRVALRGE 151

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435

 Score = 68.9 bits (167), Expect = 8e-15
 Identities = 22/141 (15%), Positives = 57/141 (40%), Gaps = 2/141 (1%)

Query: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRR 62
           I  + + N +G+  +++ Y       R A++   V    AR + +            + +
Sbjct: 2   IGGLFIYNHKGEVLISRVYRDDI--GRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVK 59

Query: 63  YASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNG 122
            ++++       + N   + EF++ + + M  +FG + E +I  +    + +L+E++  G
Sbjct: 60  RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119

Query: 123 CIVETSKSNILSPIQLMEKMS 143
               +    + + I      S
Sbjct: 120 YPQNSETGALKTFITQQGIKS 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	100.0
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	100.0
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	100.0
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	100.0
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.57
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	96.5
2j3w_A	142	Sedlin, trafficking protein particle complex prote	95.23
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	95.2
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	95.16
3cue_C	159	Transport protein particle 18 kDa subunit; membran	95.15
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	95.05
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	94.31
3cue_A	219	Transport protein particle 23 kDa subunit; membran	94.02
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	93.23
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	91.93
1nrj_A	158	Signal recognition particle receptor alpha subunit	90.22
2fh5_A	185	Signal recognition particle receptor alpha subunit	86.72

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=5.3e-46  Score=273.06  Aligned_cols=141  Identities=43%  Similarity=0.792  Sum_probs=136.2

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI   81 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~   81 (143)
                      ||+|++|+|++|+++++|||++.++++|+++++++++++.+|+++.||++++++++++|+++++|||+++++.++||+++
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~   80 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT   80 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            89999999999999999999999998899999999999888877789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhcc
Q 032296           82 LEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKM  142 (143)
Q Consensus        82 ~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~  142 (143)
                      +++||+++++|++|||++||.+|++||+++|++||||+|+|+|++||++.|++++++++.+
T Consensus        81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l  141 (158)
T 1w63_Q           81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLL  141 (158)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhh
Confidence            9999999999999999999999999999999999999999999999999999999988754

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=4e-46  Score=272.59  Aligned_cols=136  Identities=24%  Similarity=0.443  Sum_probs=126.7

Q ss_pred             ceEEEEEEeCCCCEEEEecCcC--CCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEW--LTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENEL   79 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel   79 (143)
                      ||+|++|+|++|+++++|||++  .+.++|+++++++|+++. ++  .+|++.++|++++||++++|||+++++.++||+
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r~--~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel   88 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-RT--DSEIALLEGLTVVYKSSIDLYFYVIGSSYENEL   88 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-SC--CCCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC--CCCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence            9999999999999999999998  577889999999999974 43  389999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh-ccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhh
Q 032296           80 AILEFIHLLVETMDRHF-GNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLME  140 (143)
Q Consensus        80 ~~~e~L~~~v~~l~~~f-~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~  140 (143)
                      +++++||+++++|++|| |++||++|++||++||++||||+|+|+|||||++.|++|+++.+
T Consensus        89 ~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~  150 (153)
T 3tjz_C           89 MLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG  150 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence            99999999999999999 89999999999999999999999999999999999999998764

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=100.00  E-value=1.4e-45  Score=266.22  Aligned_cols=142  Identities=41%  Similarity=0.711  Sum_probs=136.8

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAI   81 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~   81 (143)
                      ||+|++|+|++|+++++|||++.+.++++++++++++++.+++++.||++++++++++|+++++|||+++++.++||+++
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~   80 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY   80 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence            89999999999999999999998888899999999999887766789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhhhccC
Q 032296           82 LEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKMS  143 (143)
Q Consensus        82 ~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~~~~~  143 (143)
                      +++||+++++|++|||++||.+|++||+++|++||||+|+|+|++|++..+++++..+|+++
T Consensus        81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~~  142 (142)
T 2vgl_S           81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE  142 (142)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999998874

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=2.1e-36  Score=251.09  Aligned_cols=136  Identities=11%  Similarity=0.146  Sum_probs=120.2

Q ss_pred             CceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcc-c-CCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCH
Q 032296            1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR-T-EQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENE   78 (143)
Q Consensus         1 mmI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~ne   78 (143)
                      |||+|++|+|++|+++++|||++....   ...+.+++.+.++ + +..||++++++++++|+++++|||+++++.++||
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~   77 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVDM---SEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACV   77 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCTT---TTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCCh---HHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            999999999999999999999973221   1233344555443 2 4689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhh
Q 032296           79 LAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLM  139 (143)
Q Consensus        79 l~~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~  139 (143)
                      ++++++||+++++|++|||++||++|++||+++|++||||+|+|+|++||++.|++++.+.
T Consensus        78 l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~  138 (423)
T 1w63_M           78 SLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQE  138 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCC
Confidence            9999999999999999999999999999999999999999999999999999999998765

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=100.00  E-value=3.8e-35  Score=244.34  Aligned_cols=134  Identities=13%  Similarity=0.196  Sum_probs=119.8

Q ss_pred             ceEEEEEEeCCCCEEEEecCcC-CCHHHHHHHHHHHHHHHhc-ccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEW-LTLEERRALEGEIVRKCLA-RTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENEL   79 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel   79 (143)
                      ||+|++|+|++|+++++|||++ .+...    ...+++.+.+ ++...+|++++++++++|+++++|||+++++.++||+
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~----~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l   76 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNA----VDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAA   76 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHH----HHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhH----HHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence            8999999999999999999997 44322    2333455554 3346899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccHHHHHhhHHHHHHHHHHHHhCcEEeecCHHHHHHHHhhh
Q 032296           80 AILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLM  139 (143)
Q Consensus        80 ~~~e~L~~~v~~l~~~f~~v~e~~i~~nf~~vy~iLDEiid~G~~~eT~~~~i~~~i~~~  139 (143)
                      +++++||+++++|++|||++||++|++||+++|++||||+|+|+|++||++.|+.++.+.
T Consensus        77 ~~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~  136 (435)
T 2vgl_M           77 MVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQ  136 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999998887754

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.57  E-value=0.058  Score=39.65  Aligned_cols=94  Identities=15%  Similarity=0.219  Sum_probs=60.0

Q ss_pred             ceEEEEEEeC-CCCEEEEecCcCCC-----HHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCC
Q 032296            2 GIRFILMVNK-QGQTRLAQYYEWLT-----LEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDND   75 (143)
Q Consensus         2 mI~~~~iln~-~G~~il~k~Y~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~   75 (143)
                      ||...+|.-. +| ++|+.++...+     ...-+.+.+.+.+++...++..+ -++.+++.+-|..-+++.++|+++.+
T Consensus         2 Mi~ya~IaR~~d~-~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~-s~~~~~y~fhy~~~~gl~~l~i~d~~   79 (196)
T 2nut_C            2 MVLLTMIARVADG-LPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRC-TLEAGAMTFHYIIEQGVCYLVLCEAA   79 (196)
T ss_dssp             CCCCEEEEETTTC-CEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEE-EEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEEEEEEcCCC-cEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence            4444445443 45 55566665321     11222333333344321122222 35678999889999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHhhhc
Q 032296           76 ENELAILEFIHLLVETMDRHFG   97 (143)
Q Consensus        76 ~nel~~~e~L~~~v~~l~~~f~   97 (143)
                      .+.-..+.||..+.+-+..-++
T Consensus        80 yp~r~af~fL~~i~~~F~~~~~  101 (196)
T 2nut_C           80 FPKKLAFAYLEDLHSEFDEQHG  101 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999988877665

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=96.50  E-value=0.039  Score=38.96  Aligned_cols=93  Identities=12%  Similarity=0.160  Sum_probs=58.3

Q ss_pred             CceEEEEEEeCCCCEEEEecCcCC-----C-HHHHHHHHHHHHHH---Hhc--ccCCCc--ceeEeCCEEE-EEEEeCcE
Q 032296            1 MGIRFILMVNKQGQTRLAQYYEWL-----T-LEERRALEGEIVRK---CLA--RTEQQC--SFVEHRNYKI-VYRRYASL   66 (143)
Q Consensus         1 mmI~~~~iln~~G~~il~k~Y~~~-----~-~~~~~~~~~~~~~~---~~~--~~~~~~--~i~~~~~~~~-vy~~~~~l   66 (143)
                      |||.++.|+|++|.+++.|-|...     + .++.+....-++..   +.+  +.....  ..+..+++++ .|..-.++
T Consensus         1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI   80 (145)
T ss_dssp             -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred             CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence            899999999999999999999642     2 33333222222221   111  111111  2334566664 56677789


Q ss_pred             EEEEEEcCCcCHHHHHHHHHHHH-HHHHhh
Q 032296           67 FFLVGVDNDENELAILEFIHLLV-ETMDRH   95 (143)
Q Consensus        67 ~f~~~~~~~~nel~~~e~L~~~v-~~l~~~   95 (143)
                      -|+++++.++++  +-++++.+. +..-+|
T Consensus        81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~  108 (145)
T 2j3t_C           81 KVVMNTDLGVGP--IRDVLHHIYSALYVEF  108 (145)
T ss_dssp             EEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred             EEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence            999999988765  557788877 666664

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=95.23  E-value=0.48  Score=33.03  Aligned_cols=95  Identities=7%  Similarity=0.051  Sum_probs=57.9

Q ss_pred             Cc-eEEEEEEeCCCCEEEEecCcCCCH---HHHHHHHHH--HHHH---Hhc--ccCCCccee---EeCCEEE-EEEEeCc
Q 032296            1 MG-IRFILMVNKQGQTRLAQYYEWLTL---EERRALEGE--IVRK---CLA--RTEQQCSFV---EHRNYKI-VYRRYAS   65 (143)
Q Consensus         1 mm-I~~~~iln~~G~~il~k~Y~~~~~---~~~~~~~~~--~~~~---~~~--~~~~~~~i~---~~~~~~~-vy~~~~~   65 (143)
                      |+ |.++.|+|++|.+++.|-|.+.+.   .+..++...  ++..   +-.  +++..+-..   .++++++ .|..-.+
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg   82 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   82 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence            78 999999999999999999975321   111222211  2211   111  112222222   2345553 5666778


Q ss_pred             EEEEEEEcCCcCHHHHHHHHHHHHHHHHhhh
Q 032296           66 LFFLVGVDNDENELAILEFIHLLVETMDRHF   96 (143)
Q Consensus        66 l~f~~~~~~~~nel~~~e~L~~~v~~l~~~f   96 (143)
                      +-|+++++.. ++-.+-++++.+.++.-++.
T Consensus        83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v  112 (142)
T 2j3w_A           83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFA  112 (142)
T ss_dssp             CEEEEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence            9999999863 45667788888887776665

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=95.20  E-value=0.15  Score=36.94  Aligned_cols=83  Identities=18%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             CCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHHHHHHHHHH
Q 032296           12 QGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLVET   91 (143)
Q Consensus        12 ~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~~e~L~~~v~~   91 (143)
                      +|.++|+.+-....  ..+...+.+.+++..+  ..-.-++.+++.+=|..-+++.++|+++.+.+--..+.||..+.+-
T Consensus        53 RG~~VLae~t~~~g--nf~~iak~ll~kl~~~--~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~e  128 (169)
T 2vx8_A           53 RGTTILAKHAWCGG--NFLEVTEQILAKIPSE--NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR  128 (169)
T ss_dssp             ETTEEEEEEESSCB--SHHHHHHHHHTTSCSS--CEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeccCCC--CHHHHHHHHHhhCCCC--CCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHH
Confidence            47788888644211  1122232222332211  1112356799998888889999999999999999999999999999


Q ss_pred             HHhhhcc
Q 032296           92 MDRHFGN   98 (143)
Q Consensus        92 l~~~f~~   98 (143)
                      +..-+++
T Consensus       129 F~~~y~~  135 (169)
T 2vx8_A          129 FQTTYGS  135 (169)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhhh
Confidence            9888764

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=95.16  E-value=0.48  Score=34.58  Aligned_cols=89  Identities=21%  Similarity=0.295  Sum_probs=61.1

Q ss_pred             CceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcc-cCC-CcceeEeCCEEEEEEEeCcEEEEEEEcCCcCH
Q 032296            1 MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLAR-TEQ-QCSFVEHRNYKIVYRRYASLFFLVGVDNDENE   78 (143)
Q Consensus         1 mmI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~ne   78 (143)
                      |-|-.-+|-  +|.++|+.|=....     .| ..+.+.++.+ ++. .---++.+++.+-|...+++.++|+++.+.+.
T Consensus         2 M~ilYa~VA--rg~~iLae~t~~~g-----nf-~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~   73 (189)
T 4b93_A            2 MAILFAVVA--RGTTILAKHAWCGG-----NF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER   73 (189)
T ss_dssp             CSEEEEEEE--ETTEEEEEEESSEE-----CH-HHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred             CceEEEEEE--eCCEEEEeCCCCCC-----CH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCH
Confidence            444433343  69999998733211     11 1223444432 221 11235789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhc
Q 032296           79 LAILEFIHLLVETMDRHFG   97 (143)
Q Consensus        79 l~~~e~L~~~v~~l~~~f~   97 (143)
                      -..+.||..+.+-+..-+|
T Consensus        74 r~af~fL~~i~~eF~~~~~   92 (189)
T 4b93_A           74 SRAFSFLNEVKKRFQTTYG   92 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            9999999999988877776

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.091  Score=37.68  Aligned_cols=93  Identities=13%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             CceEEEEEEeCCCCEEEEecCcCC-----------CHHHHHHHHHH-HHHH---Hhccc--CCCcce--eEeCCEEE-EE
Q 032296            1 MGIRFILMVNKQGQTRLAQYYEWL-----------TLEERRALEGE-IVRK---CLART--EQQCSF--VEHRNYKI-VY   60 (143)
Q Consensus         1 mmI~~~~iln~~G~~il~k~Y~~~-----------~~~~~~~~~~~-~~~~---~~~~~--~~~~~i--~~~~~~~~-vy   60 (143)
                      |+|.++.|+|++|..+..|-|.+.           ..++..++..- ++..   +.+-+  +....+  +..+.+++ .|
T Consensus         1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~   80 (159)
T 3cue_C            1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY   80 (159)
T ss_dssp             CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred             CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence            899999999999999999998531           12222232222 2221   11111  111222  23355554 45


Q ss_pred             EEeCcEEEEEEEcCCcCHHHHHHHHHHHHH-HHHhh
Q 032296           61 RRYASLFFLVGVDNDENELAILEFIHLLVE-TMDRH   95 (143)
Q Consensus        61 ~~~~~l~f~~~~~~~~nel~~~e~L~~~v~-~l~~~   95 (143)
                      ..-.++-|++++|..++++  -++|+.+++ +.-+|
T Consensus        81 eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y  114 (159)
T 3cue_C           81 CTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY  114 (159)
T ss_dssp             CCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred             EeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence            5566899999999886654  466777775 55554

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=95.05  E-value=0.56  Score=32.77  Aligned_cols=97  Identities=13%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             CceEEEEEEeCCC--CEEEEecCcC--C---CHHHHHHHHHHHHHHHhccc--CCCcceeEeCCEEEEEE-EeCcEEEEE
Q 032296            1 MGIRFILMVNKQG--QTRLAQYYEW--L---TLEERRALEGEIVRKCLART--EQQCSFVEHRNYKIVYR-RYASLFFLV   70 (143)
Q Consensus         1 mmI~~~~iln~~G--~~il~k~Y~~--~---~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~vy~-~~~~l~f~~   70 (143)
                      |=|.++.|+-..+  -++|+..++-  .   .....+++...+.+.++.|.  +..+ -++.+++.+-|. +.+++.+++
T Consensus         5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~-sv~~~~y~fH~~~~~~gl~~l~   83 (144)
T 3bw6_A            5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQ-SIEEGNYIGHVYARSEGICGVL   83 (144)
T ss_dssp             CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEE-EEEETTEEEEEEECTTSEEEEE
T ss_pred             EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceE-EEEeCCEEEEEEEecCCEEEEE
Confidence            4466776765443  5677777762  1   22223445455555665443  2222 356788887666 778999999


Q ss_pred             EEcCCcCHHHHHHHHHHHHHHHHhhhcc
Q 032296           71 GVDNDENELAILEFIHLLVETMDRHFGN   98 (143)
Q Consensus        71 ~~~~~~nel~~~e~L~~~v~~l~~~f~~   98 (143)
                      ++|.+.+.-..+.+|+.+.+-+..-+|.
T Consensus        84 i~D~~yp~rvAF~~L~~i~~eF~~~y~~  111 (144)
T 3bw6_A           84 ITDKEYPVRPAYTLLNKILDEYLVAHPK  111 (144)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred             EECCCCChhHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999988888776663

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=94.31  E-value=0.92  Score=31.98  Aligned_cols=92  Identities=10%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             eEEEEEEeCCCCEEEEecCcCCCH-HHHHHHHHHHHHHHh----ccc-CC-CcceeEeCCEEEEEEEeCcEEEEEEEcCC
Q 032296            3 IRFILMVNKQGQTRLAQYYEWLTL-EERRALEGEIVRKCL----ART-EQ-QCSFVEHRNYKIVYRRYASLFFLVGVDND   75 (143)
Q Consensus         3 I~~~~iln~~G~~il~k~Y~~~~~-~~~~~~~~~~~~~~~----~~~-~~-~~~i~~~~~~~~vy~~~~~l~f~~~~~~~   75 (143)
                      +.+++|-|++|-+++.-.....++ .-+..|... |..+.    +-+ ++ ..-+-.++++.+|+.....+++.++++.+
T Consensus        38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsT-f~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~  116 (143)
T 3cpt_A           38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLST-FALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSS  116 (143)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHH-HHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred             eEEEEEECCCCcEEEEecCCCCchhhcccchhhh-HHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCC
Confidence            689999999999999888875433 223344444 33221    111 22 33345678999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHhh
Q 032296           76 ENELAILEFIHLLVETMDRH   95 (143)
Q Consensus        76 ~nel~~~e~L~~~v~~l~~~   95 (143)
                      .|--.++++=+.+...+...
T Consensus       117 aNtG~Il~Le~~L~p~l~~L  136 (143)
T 3cpt_A          117 ANTGLIVSLEKELAPLFEEL  136 (143)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhHhhhHHHHHHHHHHH
Confidence            99999988766666655543

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=94.02  E-value=1.4  Score=33.13  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             CceEEEEEEeCCCCEEEEecCc
Q 032296            1 MGIRFILMVNKQGQTRLAQYYE   22 (143)
Q Consensus         1 mmI~~~~iln~~G~~il~k~Y~   22 (143)
                      |+|.+++|+|+.|..++.|-|.
T Consensus         1 M~i~sl~IiNk~GglIY~r~~~   22 (219)
T 3cue_A            1 MAIETILVINKSGGLIYQRNFT   22 (219)
T ss_dssp             -CEEEEEEECTTSCEEEEEECS
T ss_pred             CeeEEEEEEeCCCCEEeehhhc
Confidence            8999999999999999999997

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=93.23  E-value=1.8  Score=31.84  Aligned_cols=97  Identities=13%  Similarity=0.152  Sum_probs=66.4

Q ss_pred             CceEEEEEEeCCCC--EEEEecCcC-----CCHHHHHHHHHHHHHHHhcccCCC-cceeEeCCEEEE-EEEeCcEEEEEE
Q 032296            1 MGIRFILMVNKQGQ--TRLAQYYEW-----LTLEERRALEGEIVRKCLARTEQQ-CSFVEHRNYKIV-YRRYASLFFLVG   71 (143)
Q Consensus         1 mmI~~~~iln~~G~--~il~k~Y~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~v-y~~~~~l~f~~~   71 (143)
                      |=|-++.|+-..|+  .+|+.-|+-     ......+.|..-+-+.+..+.+.. ---++.+++.+- |.+.+++.++++
T Consensus         2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~i   81 (199)
T 3kyq_A            2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVI   81 (199)
T ss_dssp             CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred             ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence            44778888876655  345666661     233344444433334455543221 123556788775 888899999999


Q ss_pred             EcCCcCHHHHHHHHHHHHHHHHhhhc
Q 032296           72 VDNDENELAILEFIHLLVETMDRHFG   97 (143)
Q Consensus        72 ~~~~~nel~~~e~L~~~v~~l~~~f~   97 (143)
                      ++.+.+.-..+.||..+.+-+..-++
T Consensus        82 td~~yp~r~AF~fL~ei~~eF~~~~~  107 (199)
T 3kyq_A           82 ADSEYPSRVAFTLLEKVLDEFSKQVD  107 (199)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999888877776

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=91.93  E-value=2.6  Score=30.40  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=59.6

Q ss_pred             CCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCC--CcceeEeCCEEEEEEEeCcEEEEEEEcCCcCHHHHHHHHHHHH
Q 032296           12 QGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQ--QCSFVEHRNYKIVYRRYASLFFLVGVDNDENELAILEFIHLLV   89 (143)
Q Consensus        12 ~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~vy~~~~~l~f~~~~~~~~nel~~~e~L~~~v   89 (143)
                      +|.++|+.|=....     .| ..+.+.++.+-+.  .---++.+++.+-|..-+++.++|+++.+.+--..+.||..+.
T Consensus        63 rg~tiLAE~t~~~g-----nf-~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~  136 (173)
T 4afi_A           63 RGTTILAKHAWCGG-----NF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK  136 (173)
T ss_dssp             ETTEEEEEEESSCC-----CH-HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEccCCCC-----CH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHH
Confidence            58899998754321     12 2344555543221  1124568999998888899999999999999999999999999


Q ss_pred             HHHHhhhcc
Q 032296           90 ETMDRHFGN   98 (143)
Q Consensus        90 ~~l~~~f~~   98 (143)
                      +-+..-+|.
T Consensus       137 ~eF~~~yg~  145 (173)
T 4afi_A          137 KRFQTTYGS  145 (173)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHhch
Confidence            998887764

>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4

Probab=90.22  E-value=1.8  Score=30.68  Aligned_cols=72  Identities=11%  Similarity=0.216  Sum_probs=45.6

Q ss_pred             ceEEEEEEeCCCCEEEEec--CcCCCHHHHHHHHHHHHHH-HhcccCC---------CcceeEe-------CCEEEEEE-
Q 032296            2 GIRFILMVNKQGQTRLAQY--YEWLTLEERRALEGEIVRK-CLARTEQ---------QCSFVEH-------RNYKIVYR-   61 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~--Y~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~i~~~-------~~~~~vy~-   61 (143)
                      ||..+.|+..+|++++.-.  =+..+.....+|..++... +. +.+.         .-+++.+       +++++.|. 
T Consensus         1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~-~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~   79 (158)
T 1nrj_A            1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVT-RKESVANANTDGFDFNLLTINSEHKNSPSFNALFYL   79 (158)
T ss_dssp             CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCC-GGGEECSGGGTTCCEEEEECC--------CEEEEEE
T ss_pred             CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcc-cccccccccccccceeeEeecccccCCCCeeEEEEe
Confidence            8999999999999987533  1234555556666655432 21 1111         2356666       78888776 


Q ss_pred             -EeCcEEEEEEEcC
Q 032296           62 -RYASLFFLVGVDN   74 (143)
Q Consensus        62 -~~~~l~f~~~~~~   74 (143)
                       +...|||+++-.+
T Consensus        80 skQP~LyfVvtyae   93 (158)
T 1nrj_A           80 NKQPELYFVVTFAE   93 (158)
T ss_dssp             EETTEEEEEEEESS
T ss_pred             cCCCcEEEEEEecc
Confidence             6778999988854

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=86.72  E-value=3.5  Score=30.20  Aligned_cols=93  Identities=13%  Similarity=0.191  Sum_probs=60.4

Q ss_pred             ceEEEEEEeCCCCEEEEecCcCCCHHHHHHHHHHHHHHHhcccCCCcceeEeCCEEEEEEEeC--cEEEEEEEcCCcCHH
Q 032296            2 GIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARTEQQCSFVEHRNYKIVYRRYA--SLFFLVGVDNDENEL   79 (143)
Q Consensus         2 mI~~~~iln~~G~~il~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~--~l~f~~~~~~~~nel   79 (143)
                      |+..+.|++..|=++-+  |.+.+. -...-...+.+.++=......+.+.++++.+=|+..+  +|.|+|+-..=-+-.
T Consensus        10 ~~D~~~IfTkGGvVLWs--~~~~~~-~~~~~IN~LIr~VlLEER~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~   86 (185)
T 2fh5_A           10 MVDFFTIFSKGGLVLWC--FQGVSD-SCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLT   86 (185)
T ss_dssp             SCSEEEEEETTSBEEEE--EBTTTB-SCCCHHHHHHHHTGGGC-------CCCCCEEEEEEETTTTEEEEEEESCGGGHH
T ss_pred             ceeEEEEEeCCeEEEEe--ecCCcc-cccchHHHHHHHhhhccccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccch
Confidence            78889999999988866  332210 0011244555554321111233477899999999877  588999998877778


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 032296           80 AILEFIHLLVETMDRHFG   97 (143)
Q Consensus        80 ~~~e~L~~~v~~l~~~f~   97 (143)
                      .+-++|..+...+.+.|+
T Consensus        87 YiD~LL~~v~~~Fv~~Y~  104 (185)
T 2fh5_A           87 YVDKLIDDVHRLFRDKYR  104 (185)
T ss_dssp             HHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888887777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	6e-45
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	1e-29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	100.0
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	96.11
d2fh5a1	129	Signal recognition particle receptor alpha subunit	92.29
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	91.98

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.054  Score=35.44  Aligned_cols=91  Identities=10%  Similarity=0.078  Sum_probs=65.4

Q ss_pred             eEEEEEEeCCCCEEEEecCcCCCH-HHHHHHHHHHHHHHh----c--ccCCCcceeEeCCEEEEEEEeCcEEEEEEEcCC
Q 032296            3 IRFILMVNKQGQTRLAQYYEWLTL-EERRALEGEIVRKCL----A--RTEQQCSFVEHRNYKIVYRRYASLFFLVGVDND   75 (143)
Q Consensus         3 I~~~~iln~~G~~il~k~Y~~~~~-~~~~~~~~~~~~~~~----~--~~~~~~~i~~~~~~~~vy~~~~~l~f~~~~~~~   75 (143)
                      +++++|-|++|=++++=.-...++ ..+..|... |....    +  -+.+..-+..++++.+|+-....+++.+++..+
T Consensus        17 l~~I~iTDrDGVpv~~v~~~~~p~~~~~~~~lst-f~~a~dq~sKLglg~~ksii~~Y~~~qvv~~~~~pl~vt~ia~~~   95 (116)
T d3cpta1          17 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLST-FALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSS   95 (116)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHH-HHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred             eEEEEEEcCCCcEEEEecCCCChhhhcchHHHHH-HHHHHHhhcccCCCCCcEEEEEecCeEEEEEecCceEEEEEecCC
Confidence            689999999999988776554333 223344333 22221    1  112344566789999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHh
Q 032296           76 ENELAILEFIHLLVETMDR   94 (143)
Q Consensus        76 ~nel~~~e~L~~~v~~l~~   94 (143)
                      .|--+++.+-..+-..|..
T Consensus        96 aNtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          96 ANTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhh
Confidence            9999999988887777654

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.89  Score=29.77  Aligned_cols=90  Identities=16%  Similarity=0.180  Sum_probs=60.7

Q ss_pred             ceEEEEEEeCCCCEEEE-ecCcCCCHHHHHHHHHHHHHHHh-c-ccCCCcceeEeCCEEEEEEEeC--cEEEEEEEcCCc
Q 032296            2 GIRFILMVNKQGQTRLA-QYYEWLTLEERRALEGEIVRKCL-A-RTEQQCSFVEHRNYKIVYRRYA--SLFFLVGVDNDE   76 (143)
Q Consensus         2 mI~~~~iln~~G~~il~-k~Y~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~vy~~~~--~l~f~~~~~~~~   76 (143)
                      ||..+.|++..|=++-+ +-+.+...    .....+.+.+. . |.+ . +-+.++++++-|+..+  +|.|+|+-..=-
T Consensus         1 MiD~f~IftkGGiVLW~~~~~~~~~~----~~IN~LI~~vlLEER~~-~-~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il   74 (129)
T d2fh5a1           1 MVDFFTIFSKGGLVLWCFQGVSDSCT----GPVNALIRSVLLQERGG-N-NSFTHEALTLKYKLDNQFELVFVVGFQKIL   74 (129)
T ss_dssp             SCSEEEEEETTSBEEEEEBTTTBSCC----CHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGG
T ss_pred             CccEEEEEeCCeEEEEeecCCCcccc----hhHHHHHHHhheecccC-C-CceeECCEEEEEEEeccCCEEEEEEEhhhh
Confidence            89999999999988775 33333211    12444555543 2 322 2 2366899999999887  588999988877


Q ss_pred             CHHHHHHHHHHHHHHHHhhhc
Q 032296           77 NELAILEFIHLLVETMDRHFG   97 (143)
Q Consensus        77 nel~~~e~L~~~v~~l~~~f~   97 (143)
                      +-..+-.+|..+...+.+.|+
T Consensus        75 ~l~yvd~lL~~i~~~F~~~y~   95 (129)
T d2fh5a1          75 TLTYVDKLIDDVHRLFRDKYR   95 (129)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTH
T ss_pred             chHHHHHHHHHHHHHHHHHHH
Confidence            888888888888877777775

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.98  E-value=1  Score=29.62  Aligned_cols=96  Identities=14%  Similarity=0.109  Sum_probs=60.6

Q ss_pred             CceEEEEEEeCC--CCEEEEecCc--CCC---HHHHHHHHHHHHHHHhcccC--CCcceeEeCCEEE-EEEEeCcEEEEE
Q 032296            1 MGIRFILMVNKQ--GQTRLAQYYE--WLT---LEERRALEGEIVRKCLARTE--QQCSFVEHRNYKI-VYRRYASLFFLV   70 (143)
Q Consensus         1 mmI~~~~iln~~--G~~il~k~Y~--~~~---~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~-vy~~~~~l~f~~   70 (143)
                      |=|-++.|+...  .-+.|...++  +.+   ...-+.+..-+.+.+..|.+  ..+ -++.+++.+ +|.+.++|.+++
T Consensus         1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g~r~-sv~~~~y~~h~yv~~~gl~~l~   79 (140)
T d1ioua_           1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQ-SIEEGNYIGHVYARSEGICGVL   79 (140)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSSSEE-EEEETTEEEEEECCSSSCEEEE
T ss_pred             CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCCceE-EEEcCCeEEEEEEeeCCEEEEE
Confidence            556677777743  3345676666  221   22223333333344555543  233 356677765 377888999999


Q ss_pred             EEcCCcCHHHHHHHHHHHHHHHHhhhc
Q 032296           71 GVDNDENELAILEFIHLLVETMDRHFG   97 (143)
Q Consensus        71 ~~~~~~nel~~~e~L~~~v~~l~~~f~   97 (143)
                      +++.+.+.-..+.+|+.+.+-+..-++
T Consensus        80 i~d~~Yp~r~AF~~L~~i~~eF~~~~~  106 (140)
T d1ioua_          80 ITDKQYPVRPAYTLLNKILDEYLVAHP  106 (140)
T ss_dssp             EBCTTSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             EECCCcchHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999987766655444