Citrus Sinensis ID: 032302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MFLTRFIGRAFLAAAAKSESSAATAAAASMAtsrhnpleeffendrgpddqkpvygrswkASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHaqnlkfpnperipkvRKSMCRIKQVLTEraieepdprrSAEMKRMINAL
Flexible Loop (DISEMBL)
MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPleeffendrgpddqkpvYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHaqnlkfpnperipkvrKSMCRIKQvlteraieepdprrsaeMKRMINAL
Low Complexity Region (SEG)
MFLTRFIGRAFLaaaaksessaataaaasmatsRHNPLEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Disordered region (IsUnstruct)
**LTRFIGRAFLA*****************************************YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHA******************CRI***************************
Disordered Region (DISOPRED)
********************************SRHNPLEEFFENDRG***********WKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQM***************KVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Disordered Region (DISEMBL)
MFLTRFIGRAFLA********************RHNPLEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Disordered Region (DISPRO)
MFLTRFIGRAFLAAAAKSESSAATAAAASMAT*RHNPLEEFFENDR*********GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q8K2Y7	252	39S ribosomal protein L47	yes	no	0.601	0.341	0.488	3e-15
Q08DT6	252	39S ribosomal protein L47	yes	no	0.601	0.341	0.488	4e-15
Q9HD33	250	39S ribosomal protein L47	yes	no	0.601	0.344	0.476	2e-14
P87232	144	54S ribosomal protein L4,	yes	no	0.643	0.638	0.416	7e-12
Q2H080	272	54S ribosomal protein L4,	N/A	no	0.587	0.308	0.446	1e-11
Q7S910	263	54S ribosomal protein L4,	N/A	no	0.482	0.262	0.458	1e-09
A6RDX3	248	54S ribosomal protein L4,	N/A	no	0.580	0.334	0.404	2e-09
A2QCC7	273	54S ribosomal protein L4,	yes	no	0.636	0.333	0.41	7e-09
Q756Y8	341	54S ribosomal protein L4,	yes	no	0.657	0.275	0.361	8e-09
Q6FK61	315	54S ribosomal protein L4,	yes	no	0.608	0.276	0.387	9e-09

>sp|Q8K2Y7|RM47_MOUSE 39S ribosomal protein L47, mitochondrial OS=Mus musculus GN=Mrpl47 PE=2 SV=2

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query: 38  LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
           LEEFF++ +   ++K   G SW   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct: 66  LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query: 98  LKFPNPERIPKVRKSMCRIKQVLTER 123
           L  P+PER+ KV  SM  + +V+ ER
Sbjct: 126 LPMPSPERLEKVVDSMDNVDKVVQER 151

Mus musculus (taxid: 10090)

>sp|Q08DT6|RM47_BOVIN 39S ribosomal protein L47, mitochondrial OS=Bos taurus GN=MRPL47 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query: 38  LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
           LEEFF++ +   ++K   G SW   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct: 66  LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query: 98  LKFPNPERIPKVRKSMCRIKQVLTER 123
           L  P+PER+ KV  SM  + +V+ ER
Sbjct: 126 LPMPSPERLEKVVDSMDALDKVVQER 151

Bos taurus (taxid: 9913)

>sp|Q9HD33|RM47_HUMAN 39S ribosomal protein L47, mitochondrial OS=Homo sapiens GN=MRPL47 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 57/86 (66%)

Query: 38  LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
           LEEFF++ +    +K   G +W   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct: 64  LEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 123

Query: 98  LKFPNPERIPKVRKSMCRIKQVLTER 123
           L  P+PER+ KV  SM  + +V+ ER
Sbjct: 124 LPMPSPERLDKVVDSMDALDKVVQER 149

Homo sapiens (taxid: 9606)

>sp|P87232|RM04_SCHPO 54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl4 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 32  TSRHNPLEEFFENDRG--PDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQ 89
            S  +PL  FF + +   P  ++  +GR+W A ELR KS++DL+ LWY  L+EKN+L TQ
Sbjct: 32  VSDTHPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQ 91

Query: 90  QQMLHAQNLKFPNP--ERIPKVRKSMCRIKQVLTER 123
           +  +    L  P    ER+  V K+M  IK VL ER
Sbjct: 92  RAEMKRLQLTIPKASNERVLAVNKTMAAIKFVLWER 127

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2H080|RM04_CHAGB 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MRPL4 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 54/94 (57%), Gaps = 10/94 (10%)

Query: 38  LEEFFEN-----DRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQM 92
           L EFF+N     +  P+  K  +GRSW A ELR KSWDDL++LW+V  KE+N + T    
Sbjct: 99  LWEFFQNRTMVVNSPPEIAK--HGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWE 156

Query: 93  LHAQNLKFPNP---ERIPKVRKSMCRIKQVLTER 123
            +   L F      ER   VR++M  IK VLTER
Sbjct: 157 RNKSGLGFGEAEMRERDNAVRQTMRSIKHVLTER 190

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|Q7S910|RM04_NEUCR 54S ribosomal protein L4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mrpl-4 PE=3 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 55  YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFP---NPERIPKVRK 111
           +GR+W  SELR KSWDDL++LW+V +KE+N + T         L F      ER   V++
Sbjct: 122 HGRAWTVSELRKKSWDDLHRLWWVCVKERNRIATANWERTKSELGFGLAEANERDRNVKQ 181

Query: 112 SMCRIKQVLTER 123
           +M  IK VLTER
Sbjct: 182 TMRGIKHVLTER 193

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|A6RDX3|RM04_AJECN 54S ribosomal protein L4, mitochondrial OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=MRPL4 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 6/89 (6%)

Query: 41  FFENDRGP---DDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMT---QQQMLH 94
           FF  DR P    +++  +GR+W   ELR KSWDDL+KL+++ +KE+N + T   ++Q L 
Sbjct: 105 FFGPDRKPIPTPEEEYAHGRAWSIQELRQKSWDDLHKLYWLCVKERNRIATARYERQRLQ 164

Query: 95  AQNLKFPNPERIPKVRKSMCRIKQVLTER 123
           A    + +  R   VR +   IKQVL ER
Sbjct: 165 AGYGDYESNNRDKTVRGTQQSIKQVLRER 193

Ajellomyces capsulata (strain NAm1 / WU24) (taxid: 339724)

>sp|A2QCC7|RM04_ASPNC 54S ribosomal protein L4, mitochondrial OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=mrpl4 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 54/100 (54%), Gaps = 9/100 (9%)

Query: 31  ATSRHNPLEEFFENDRGPDDQKPVY----GRSWKASELRLKSWDDLNKLWYVLLKEKNML 86
           AT  H  L  FF  DR      P Y    GRSW   ELR KSWDDL+ LW+V +KE+N +
Sbjct: 96  ATPDHG-LWGFFPTDRTAL-STPTYDIECGRSWSIQELREKSWDDLHSLWWVCVKERNRI 153

Query: 87  MT---QQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTER 123
            T   +++ L A   ++ + ER   +R +   IK VL ER
Sbjct: 154 ATSDMERKRLKAGYGEWESSERDRVIRVTQNGIKHVLRER 193

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q756Y8|RM04_ASHGO 54S ribosomal protein L4, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRPL4 PE=3 SV=3

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 11/105 (10%)

Query: 26  AAASMATSRHNPLEEFFENDR------GPDDQKPVYGRSWKASELRLKSWDDLNKLWYVL 79
           AAA++  +  +PL +FF+  R        DD+     R W   ELR KS+DDL+ LWY  
Sbjct: 84  AAANLECNPEHPLWQFFDGGRFMRSAEELDDK----SRPWTVPELRRKSFDDLHSLWYAC 139

Query: 80  LKEKNMLMTQQQM-LHAQNLKFPNPERIPKVRKSMCRIKQVLTER 123
           LKE+N+L  +  +  + Q     + +   +VR +M RI+ VL+ER
Sbjct: 140 LKERNILAREMHLRRNMQEEGSAHAQLDERVRTTMWRIRHVLSER 184

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6FK61|RM04_CANGA 54S ribosomal protein L4, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=MRPL4 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 36  NPLEEFFEND---RGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQM 92
           +PL +FF +    R P+D      R+W   ELR KS++DL+ LWY  LKE+N+L  +  +
Sbjct: 66  HPLWQFFSDKKFMRRPEDLDTT-SRAWSIPELRRKSFEDLHSLWYTCLKERNILARENHL 124

Query: 93  LH--AQNLKFPNPERIPKVRKSMCRIKQVLTER 123
           L   A+N +    +   K+R +M RI+ VL+ER
Sbjct: 125 LKNAAKNNRNDYEDISEKIRTTMWRIRHVLSER 157

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
351721907	142	uncharacterized protein LOC100500208 [Gl	0.986	0.992	0.805	2e-59
449440698	143	PREDICTED: 39S ribosomal protein L47, mi	0.993	0.993	0.854	3e-58
359806563	143	uncharacterized protein LOC100812176 [Gl	0.993	0.993	0.812	1e-56
224128129	142	predicted protein [Populus trichocarpa]	0.986	0.992	0.819	4e-56
297843572	143	ribosomal protein L29 family protein [Ar	0.993	0.993	0.763	2e-54
225457110	140	PREDICTED: 39S ribosomal protein L47, mi	0.972	0.992	0.791	7e-54
15223019	144	ribosomal protein L29 family protein [Ar	1.0	0.993	0.763	1e-53
192910790	143	structural constituent of ribosome [Elae	0.993	0.993	0.826	3e-52
224064424	144	predicted protein [Populus trichocarpa]	1.0	0.993	0.756	1e-51
8439885	186	Contains similarity to a mitochondrial r	1.0	0.768	0.664	4e-50

>gi|351721907|ref|NP_001238505.1| uncharacterized protein LOC100500208 [Glycine max] gi|255629706|gb|ACU15202.1| unknown [Glycine max]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 126/144 (87%), Gaps = 3/144 (2%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPV-YGRSW 59
           MFL+R +GR   AAAA+S+  A TAAAAS     HNPL+EFFE DR P+D KPV YGRSW
Sbjct: 1   MFLSRTLGRTLFAAAARSKQYATTAAAASREG--HNPLQEFFEADRSPEDDKPVVYGRSW 58

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KA ELRLKSWDDL+KLWYVLLKEKNMLMTQ+QML+AQNL+FPNPERIPKVRKSMCRIK V
Sbjct: 59  KACELRLKSWDDLHKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKHV 118

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAIEEPDPRRSAEMKRMINAL
Sbjct: 119 LTERAIEEPDPRRSAEMKRMINAL 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440698|ref|XP_004138121.1| PREDICTED: 39S ribosomal protein L47, mitochondrial-like [Cucumis sativus] gi|449528917|ref|XP_004171448.1| PREDICTED: 39S ribosomal protein L47, mitochondrial-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/144 (85%), Positives = 132/144 (91%), Gaps = 2/144 (1%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPV-YGRSW 59
           MFLTR  GR FLAAA +SE+S+ATAAAA+ A + +NPLEEFFE DR PDD KPV YGRSW
Sbjct: 1   MFLTRVFGRTFLAAA-RSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSW 59

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELRLKSWDDLNKLWYVLLKEKNMLMTQ+QML+AQNLKFPNPERIPKVRKSMCRIK V
Sbjct: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHV 119

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAI+EPDPRRSAEMKRMINAL
Sbjct: 120 LTERAIDEPDPRRSAEMKRMINAL 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806563|ref|NP_001241009.1| uncharacterized protein LOC100812176 [Glycine max] gi|255640572|gb|ACU20571.1| unknown [Glycine max]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 127/144 (88%), Gaps = 2/144 (1%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPV-YGRSW 59
           MFL+R +GR   AAAA+S+  A TAAAA+     HNPL+EFFE DR PDD KPV YGRSW
Sbjct: 1   MFLSRTLGRTLFAAAARSKQYATTAAAAA-GREGHNPLQEFFEADRSPDDDKPVVYGRSW 59

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELRLKSWDDL+KLWYVLLKEKNMLMTQ+QML+AQNL+FPNPERIPKVRKSMCRIK V
Sbjct: 60  KASELRLKSWDDLHKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKHV 119

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAIEEPDPRRSAEMKRMINAL
Sbjct: 120 LTERAIEEPDPRRSAEMKRMINAL 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128129|ref|XP_002320251.1| predicted protein [Populus trichocarpa] gi|118483659|gb|ABK93723.1| unknown [Populus trichocarpa] gi|222861024|gb|EEE98566.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 118/144 (81%), Positives = 127/144 (88%), Gaps = 3/144 (2%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKP-VYGRSW 59
           MF+TRFIGR  LAAA KSE+ AA+AAAA+  +  HNPLEEFFE DR  D+ KP VYGRSW
Sbjct: 1   MFMTRFIGRTLLAAA-KSETHAASAAAATATSG-HNPLEEFFEADRSQDEDKPIVYGRSW 58

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELRLKSWDDL KLWYVLLKEKNMLMTQ+QMLHAQN +FPNPER+PKVRKSMCRIK V
Sbjct: 59  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLHAQNFRFPNPERLPKVRKSMCRIKHV 118

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAIEEPD RRSAEMKRMINAL
Sbjct: 119 LTERAIEEPDSRRSAEMKRMINAL 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843572|ref|XP_002889667.1| ribosomal protein L29 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335509|gb|EFH65926.1| ribosomal protein L29 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 122/144 (84%), Gaps = 2/144 (1%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPV-YGRSW 59
           MFLTRF+GR FLAAA+    S   AAA+++ T   NPLEEFFE DR  D+ KPV YGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAASAIRTP-QNPLEEFFEFDRSQDEDKPVVYGRGW 59

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELRLKSWDDL KLWYVLLKEKNMLMTQ+QML AQN++FPNPERIPKVR+SMCRIK V
Sbjct: 60  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 119

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAIEEPDPRRSAEMKRM+N +
Sbjct: 120 LTERAIEEPDPRRSAEMKRMVNGM 143

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457110|ref|XP_002283452.1| PREDICTED: 39S ribosomal protein L47, mitochondrial isoform 1 [Vitis vinifera] gi|225457112|ref|XP_002283459.1| PREDICTED: 39S ribosomal protein L47, mitochondrial isoform 2 [Vitis vinifera] gi|297733826|emb|CBI15073.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 114/144 (79%), Positives = 122/144 (84%), Gaps = 5/144 (3%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPV-YGRSW 59
           MF+ R  GRA LAAA KSE SAA AA A      +NPLEEFFE DR PD+ KPV YGR W
Sbjct: 1   MFVRRVFGRALLAAA-KSEPSAAGAATARAG---YNPLEEFFEADRSPDEDKPVVYGRGW 56

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELRLKSWDDL+KLWY+LLKEKNMLMTQ+QML +QNL+FPNPERIPKVRKSMCRIK V
Sbjct: 57  KASELRLKSWDDLHKLWYILLKEKNMLMTQRQMLQSQNLRFPNPERIPKVRKSMCRIKHV 116

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAIEEPDPRRS EMKRMINAL
Sbjct: 117 LTERAIEEPDPRRSVEMKRMINAL 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223019|ref|NP_172261.1| ribosomal protein L29 family protein [Arabidopsis thaliana] gi|14030695|gb|AAK53022.1|AF375438_1 At1g07830/F24B9_7 [Arabidopsis thaliana] gi|19548071|gb|AAL87399.1| At1g07830/F24B9_7 [Arabidopsis thaliana] gi|332190068|gb|AEE28189.1| ribosomal protein L29 family protein [Arabidopsis thaliana]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 120/144 (83%), Gaps = 1/144 (0%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPV-YGRSW 59
           MFLTRF+GR FLAAA+    S   AAAAS   +  NPLEEFFE DR  D+ KPV YGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELRLKSWDDL KLWYVLLKEKNMLMTQ+QML AQN++FPNPERIPKVR+SMCRIK V
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 120

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAIEEPD RRSAEMKRM+N +
Sbjct: 121 LTERAIEEPDSRRSAEMKRMVNGM 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910790|gb|ACF06503.1| structural constituent of ribosome [Elaeis guineensis]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 126/144 (87%), Gaps = 2/144 (1%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPV-YGRSW 59
           MF++R  GR  L AAAKSESSAA AAA++ A   HNPLEEFFE DR  DD+KPV YGRSW
Sbjct: 1   MFVSRIFGRV-LYAAAKSESSAAAAAASASAKKLHNPLEEFFEVDRRTDDEKPVVYGRSW 59

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELRLKSWDDLNKLWYVLLKEKNMLMTQ+QMLHAQNL+FPNPERI KVRKSMCRIK V
Sbjct: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERISKVRKSMCRIKHV 119

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAI EPDPRRSAEMKRMIN L
Sbjct: 120 LTERAIAEPDPRRSAEMKRMINIL 143

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064424|ref|XP_002301469.1| predicted protein [Populus trichocarpa] gi|222843195|gb|EEE80742.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/144 (75%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQK-PVYGRSW 59
           MFLTRF GR  LAAA     +A+ AAAA+ ATS HNPL++FFE DR  D+ K  VYGRSW
Sbjct: 1   MFLTRFTGRTLLAAAKSETPAASAAAAAATATSGHNPLKDFFEFDRSQDEDKLIVYGRSW 60

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELR+K+WDDL+KLWYV+LKEKNMLMTQ+QMLHAQN +FPNPER+PKVRKSMCRIK V
Sbjct: 61  KASELRIKAWDDLHKLWYVMLKEKNMLMTQRQMLHAQNFRFPNPERLPKVRKSMCRIKHV 120

Query: 120 LTERAIEEPDPRRSAEMKRMINAL 143
           LTERAIEE DP RSAEMKRMIN L
Sbjct: 121 LTERAIEELDPMRSAEMKRMINTL 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439885|gb|AAF75071.1|AC007583_7 Contains similarity to a mitochondrial ribosomal protein from Saccharomyces cerevisiae gb|Z30582. ESTS gb|T13847 and gb|AI995906 come from this gene [Arabidopsis thaliana]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 120/167 (71%), Gaps = 24/167 (14%)

Query: 1   MFLTRFIGRAFLAAAAKSESSAATAAAASMATSRHNPLEEFFENDRGPDDQKPV-YG--- 56
           MFLTRF+GR FLAAA+    S   AAAAS   +  NPLEEFFE DR  D+ KPV YG   
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGSFS 60

Query: 57  --------------------RSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQ 96
                               R WKASELRLKSWDDL KLWYVLLKEKNMLMTQ+QML AQ
Sbjct: 61  LFSATHLLNTSLLVGLFIECRGWKASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQ 120

Query: 97  NLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINAL 143
           N++FPNPERIPKVR+SMCRIK VLTERAIEEPD RRSAEMKRM+N L
Sbjct: 121 NMQFPNPERIPKVRRSMCRIKHVLTERAIEEPDSRRSAEMKRMVNEL 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2026550	144	AT1G07830 [Arabidopsis thalian	1.0	0.993	0.701	1.1e-50
MGI|MGI:1921850	252	Mrpl47 "mitochondrial ribosoma	0.601	0.341	0.488	6.7e-17
UNIPROTKB|F1MNT0	252	MRPL47 "39S ribosomal protein	0.601	0.341	0.488	1.1e-16
UNIPROTKB|Q08DT6	252	MRPL47 "39S ribosomal protein	0.601	0.341	0.488	1.1e-16
UNIPROTKB|E2QXX0	252	MRPL47 "Uncharacterized protei	0.601	0.341	0.488	1.1e-16
RGD|1307531	252	Mrpl47 "mitochondrial ribosoma	0.601	0.341	0.488	1.1e-16
DICTYBASE|DDB_G0283823	199	DDB_G0283823 [Dictyostelium di	0.580	0.417	0.5	1.4e-16
UNIPROTKB|F1P1G0	215	MRPL47 "Uncharacterized protei	0.615	0.409	0.488	1.4e-16
UNIPROTKB|Q9HD33	250	MRPL47 "39S ribosomal protein	0.601	0.344	0.476	3.7e-16
WB|WBGene00015092	234	mrpl-47 [Caenorhabditis elegan	0.601	0.367	0.455	6e-16

TAIR|locus:2026550 AT1G07830 [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 101/144 (70%), Positives = 109/144 (75%)

Query:     1 MFLTRFIGRAFLXXXXXXXXXXXXXXXXXXXXXRHNPLEEFFENDRGPDDQKPV-YGRSW 59
             MFLTRF+GR FL                       NPLEEFFE DR  D+ KPV YGR W
Sbjct:     1 MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query:    60 KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
             KASELRLKSWDDL KLWYVLLKEKNMLMTQ+QML AQN++FPNPERIPKVR+SMCRIK V
Sbjct:    61 KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 120

Query:   120 LTERAIEEPDPRRSAEMKRMINAL 143
             LTERAIEEPD RRSAEMKRM+N +
Sbjct:   121 LTERAIEEPDSRRSAEMKRMVNGM 144

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

MGI|MGI:1921850 Mrpl47 "mitochondrial ribosomal protein L47" [Mus musculus (taxid:10090)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query:    38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
             LEEFF++ +   ++K   G SW   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct:    66 LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query:    98 LKFPNPERIPKVRKSMCRIKQVLTER 123
             L  P+PER+ KV  SM  + +V+ ER
Sbjct:   126 LPMPSPERLEKVVDSMDNVDKVVQER 151

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1MNT0 MRPL47 "39S ribosomal protein L47, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query:    38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
             LEEFF++ +   ++K   G SW   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct:    66 LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query:    98 LKFPNPERIPKVRKSMCRIKQVLTER 123
             L  P+PER+ KV  SM  + +V+ ER
Sbjct:   126 LPMPSPERLEKVVDSMDALDKVVQER 151

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q08DT6 MRPL47 "39S ribosomal protein L47, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query:    38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
             LEEFF++ +   ++K   G SW   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct:    66 LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query:    98 LKFPNPERIPKVRKSMCRIKQVLTER 123
             L  P+PER+ KV  SM  + +V+ ER
Sbjct:   126 LPMPSPERLEKVVDSMDALDKVVQER 151

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2QXX0 MRPL47 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query:    38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
             LEEFF++ +   ++K   G SW   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct:    66 LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query:    98 LKFPNPERIPKVRKSMCRIKQVLTER 123
             L  P+PER+ KV  SM  + +V+ ER
Sbjct:   126 LPMPSPERLEKVIDSMDALDKVVQER 151

GO:0006412 "translation" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|1307531 Mrpl47 "mitochondrial ribosomal protein L47" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 42/86 (48%), Positives = 58/86 (67%)

Query:    38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
             LEEFF++ +   ++K   G SW   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct:    66 LEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 125

Query:    98 LKFPNPERIPKVRKSMCRIKQVLTER 123
             L  P+PER+ KV  SM  + +V+ ER
Sbjct:   126 LPMPSPERLEKVVDSMDALDKVVQER 151

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

DICTYBASE|DDB_G0283823 DDB_G0283823 [Dictyostelium discoideum (taxid:44689)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 43/86 (50%), Positives = 63/86 (73%)

Query:    38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
             L++FFE+   P    P+ GRSW AS+LR KS++DL++LW+ LLKE+N L+T++++   +N
Sbjct:    45 LKDFFEHTY-PIGTYPLAGRSWAASDLRGKSFNDLHELWFELLKERNKLLTEKEI--TKN 101

Query:    98 LKFPNPERIPKVRKSMCRIKQVLTER 123
              +  NP+R+ KVRKSM  IK VL ER
Sbjct:   102 NQLQNPQRVTKVRKSMAAIKVVLGER 127

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1P1G0 MRPL47 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 43/88 (48%), Positives = 57/88 (64%)

Query:    38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
             LEEFF++ +   ++    G +W   +LR KS  DL+KLWYVLLKEKNML+T +Q    Q 
Sbjct:    31 LEEFFDDPKNWGEKTVKSGDAWNIKQLRAKSSQDLHKLWYVLLKEKNMLLTLEQESKRQQ 90

Query:    98 LKFPNPERIPKVRKSMCRIKQVLTERAI 125
                P+PER+ KV+KSM  I  V+ ER I
Sbjct:    91 KPMPSPERLEKVQKSMKNIDLVVREREI 118

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q9HD33 MRPL47 "39S ribosomal protein L47, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 41/86 (47%), Positives = 57/86 (66%)

Query:    38 LEEFFENDRGPDDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQN 97
             LEEFF++ +    +K   G +W   +LR KS +DL+KLWYVLLKE+NML+T +Q    Q 
Sbjct:    64 LEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQR 123

Query:    98 LKFPNPERIPKVRKSMCRIKQVLTER 123
             L  P+PER+ KV  SM  + +V+ ER
Sbjct:   124 LPMPSPERLDKVVDSMDALDKVVQER 149

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00015092 mrpl-47 [Caenorhabditis elegans (taxid:6239)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 41/90 (45%), Positives = 63/90 (70%)

Query:    38 LEEFFENDR--GPDDQKPVY--GRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQML 93
             +++FF+++   G  + +P +  GRSW A ELRLKS  DL+KLWYV LKE+NML+T ++  
Sbjct:    45 MKQFFDDEANFGKAELRPKHRPGRSWTAEELRLKSNSDLHKLWYVCLKERNMLITMKKAH 104

Query:    94 HAQNLKFPNPERIPKVRKSMCRIKQVLTER 123
              ++    PNPER+ +V ++M RI+ V+ ER
Sbjct:   105 TSRARNMPNPERLDRVHETMDRIESVVHER 134

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIV2052 SubName- Full=Putative uncharacterized protein; (142 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam06984	87	pfam06984, MRP-L47, Mitochondrial 39-S ribosomal p	3e-35
cd00427	57	cd00427, Ribosomal_L29_HIP, Ribosomal L29 protein/	6e-11
PRK00306	66	PRK00306, PRK00306, 50S ribosomal protein L29; Rev	0.001
COG0255	69	COG0255, RpmC, Ribosomal protein L29 [Translation,	0.002

>gnl|CDD|219251 pfam06984, MRP-L47, Mitochondrial 39-S ribosomal protein L47 (MRP-L47)

 Score =  117 bits (294), Expect = 3e-35
 Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 38  LEEFFENDRGPDDQKPV-YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQ 96
           LEEFF++ +    +  V  GR+W A ELR KS++DL+KLWYVLLKEKNML+T +  L   
Sbjct: 1   LEEFFDDKKNWPPENEVKVGRAWAAEELRHKSFNDLHKLWYVLLKEKNMLLTMEHELLRN 60

Query: 97  NLKFPNPERIPKVRKSMCRIKQVLTER 123
               P+PER+ KV+ SM  IK VL ER
Sbjct: 61  QEVMPSPERLKKVKISMENIKTVLRER 87

This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. Length = 87

>gnl|CDD|238243 cd00427, Ribosomal_L29_HIP, Ribosomal L29 protein/HIP

 Score = 54.0 bits (131), Expect = 6e-11
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 62  SELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLT 121
            ELR KS ++L +    L KE   L  Q+        +  NP RI KVRK + RIK VL 
Sbjct: 1   KELREKSDEELQEKLDELKKELFNLRFQKAT-----GQLENPHRIRKVRKDIARIKTVLN 55

Query: 122 ER 123
           E+
Sbjct: 56  EK 57

L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulation of blood coagulation. It has also been shown to inhibit apoptosis in cancer cells. Length = 57

>gnl|CDD|178971 PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed

 Score = 35.2 bits (82), Expect = 0.001
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KA ELR  S ++LN+    L KE   L   +       L+  N  R+ +VR+ + RIK V
Sbjct: 2   KAKELRELSVEELNEKLLELKKE---LFNLRFQKATGQLE--NTHRLREVRRDIARIKTV 56

Query: 120 LTERAIEE 127
           L ER +  
Sbjct: 57  LRERELGA 64

Length = 66

>gnl|CDD|223333 COG0255, RpmC, Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           K  ELR KS ++L +    L KE   L  Q      +N     P RI +VR+ + RI  V
Sbjct: 4   KRKELREKSVEELEEELRELKKELFNLRFQLATGQLEN-----PHRIREVRRDIARILTV 58

Query: 120 LTERAIEE 127
           L E+ +E 
Sbjct: 59  LREKELEA 66

Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG3331	213	consensus Mitochondrial/chloroplast ribosomal prot	100.0
PF06984	87	MRP-L47: Mitochondrial 39-S ribosomal protein L47	100.0
COG0255	69	RpmC Ribosomal protein L29 [Translation, ribosomal	99.74
CHL00154	67	rpl29 ribosomal protein L29; Validated	99.74
PRK00306	66	50S ribosomal protein L29; Reviewed	99.73
PRK14549	69	50S ribosomal protein L29P; Provisional	99.69
PF00831	58	Ribosomal_L29: Ribosomal L29 protein; InterPro: IP	99.66
PRK00461	87	rpmC 50S ribosomal protein L29; Reviewed	99.65
cd00427	57	Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 i	99.64
TIGR00012	55	L29 ribosomal protein L29. called L29 in prokaryot	99.59
KOG3436	123	consensus 60S ribosomal protein L35 [Translation,	98.51

>KOG3331 consensus Mitochondrial/chloroplast ribosomal protein L4/L29 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-40  Score=265.62  Aligned_cols=142  Identities=37%  Similarity=0.612  Sum_probs=123.7

Q ss_pred             ChHHHHHHHHHHHHHhhhcchHHH--H-HHhhccCCCCCcchhhcCCCC----CCCCCCCCCCCCCChHHHhcCCHHHHH
Q 032302            1 MFLTRFIGRAFLAAAAKSESSAAT--A-AAASMATSRHNPLEEFFENDR----GPDDQKPVYGRSWKASELRLKSWDDLN   73 (143)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~--~-a~~~~~~~~~~gL~eFF~~~~----~~~~~~~~~GRaWk~~ELR~KS~eDLh   73 (143)
                      ||...+.++++|..|...+.++.+  . +..+..++.+|||||||++..    .+.+..+++||+|+++|||.||+.|||
T Consensus         1 ~F~k~f~~l~f~~ka~~Rs~~~lvp~p~~~sa~~~~dt~pL~qFFddk~~~~~~~~~p~~k~GR~W~aeELR~KS~nDLH   80 (213)
T KOG3331|consen    1 KFTKPFPKLPFLPKAKIRSPTQLVPIPPTTSALRVPDTHPLWQFFDDKKFDRSADEEPPVKHGRAWSAEELRLKSFNDLH   80 (213)
T ss_pred             CCccccccchhhhHhhccCCccccCCccccccCCCCCCCcHHHHhhhhhccCChhhcCCcccCCccchHHHhcchhhHHH
Confidence            678889999999998888887766  2 223445566899999998543    344445669999999999999999999


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHHHhhh
Q 032302           74 KLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPDPRRSAEMKRMINA  142 (143)
Q Consensus        74 kLw~~LlKErNlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~~~~~~~~~~~~in~  142 (143)
                      +|||+|+||+|||+||+++++...+++|||+||.+|++||+||+|||+||+.++...+..++++++.++
T Consensus        81 ~LWYvcLkErNmL~T~~~~~k~~~~~~PnpERi~kV~~TM~~I~~Vl~ER~~Ay~~~~~~e~~~~~~k~  149 (213)
T KOG3331|consen   81 KLWYVCLKERNMLATMRHELKNIVGSFPNPERIDKVRTTMWRIEHVLNERNLAYSASRTGEQDERERKK  149 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988776553

>PF06984 MRP-L47: Mitochondrial 39-S ribosomal protein L47 (MRP-L47); InterPro: IPR010729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.2e-35  Score=212.91  Aligned_cols=86  Identities=53%  Similarity=0.859  Sum_probs=81.8

Q ss_pred             chhhcCCCCCC-CCCCCCCCCCCChHHHhcCCHHHHHHHHHHHHHHHhhhchHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 032302           38 LEEFFENDRGP-DDQKPVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRI  116 (143)
Q Consensus        38 L~eFF~~~~~~-~~~~~~~GRaWk~~ELR~KS~eDLhkLw~~LlKErNlr~Te~~~~q~~~~ql~np~rirkVRrtIARI  116 (143)
                      ||+||+++.++ +++.+.+||+|++.|||.|||+|||+|||+|+||+|+++|+++++......+++|+|+++|++||+||
T Consensus         1 L~eFF~~~~~~~~~~~~~~GR~Wt~~ELR~KS~eDLHkLWyv~lKERN~L~T~~~e~~r~~~~~~~~~r~~kV~~sM~~I   80 (87)
T PF06984_consen    1 LWEFFDDKKNWPPEEEVKHGRAWTAEELRRKSFEDLHKLWYVCLKERNMLLTEEYEARRQGEGMPSPERLEKVRKSMARI   80 (87)
T ss_pred             ChhhcCCCcCCCcccccCCCCcccHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            89999998886 55667799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 032302          117 KQVLTER  123 (143)
Q Consensus       117 kTVL~ER  123 (143)
                      |+||+||
T Consensus        81 k~Vl~ER   87 (87)
T PF06984_consen   81 KHVLTER   87 (87)
T ss_pred             HHHHhcC
Confidence            9999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005761 mitochondrial ribosome

>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=4.8e-18  Score=117.44  Aligned_cols=60  Identities=37%  Similarity=0.500  Sum_probs=57.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhC
Q 032302           62 SELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEE  127 (143)
Q Consensus        62 ~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~  127 (143)
                      +|||.||.+||.+.+.+|++|+ |++|      |.++|+++||++|+.||++||||+||++|+....
T Consensus         6 ~elR~~s~eeL~~~l~eLK~ELf~LR~------q~a~g~l~n~~~ir~vRr~IARi~Tv~~E~~~~~   66 (69)
T COG0255           6 KELREKSVEELEEELRELKKELFNLRF------QLATGQLENPHRIREVRRDIARILTVLREKELEA   66 (69)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4999999999999999999999 9999      9999999999999999999999999999998754

>CHL00154 rpl29 ribosomal protein L29; Validated

Probab=99.74  E-value=8e-18  Score=115.50  Aligned_cols=61  Identities=10%  Similarity=0.092  Sum_probs=59.1

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAI  125 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~  125 (143)
                      ++++|||.+|.+||.+...++++|+ |++|      |+++||++||++|+.||++||||+||++||..
T Consensus         4 mk~~elr~ls~~eL~~~l~elk~elf~LRf------q~atgql~n~~~ir~~RrdIARikTil~ek~~   65 (67)
T CHL00154          4 PKITDIIDLTDSEISEEIIKTKKELFDLRL------KKATRQNFKPHLFKHKKHRLAQLLTLLSSRLK   65 (67)
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCcccChHHHHHHHHHHHHHHHHHHHHhc
Confidence            7889999999999999999999999 9999      99999999999999999999999999999864

>PRK00306 50S ribosomal protein L29; Reviewed

Probab=99.73  E-value=1.3e-17  Score=113.28  Aligned_cols=64  Identities=36%  Similarity=0.469  Sum_probs=60.9

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEP  128 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~  128 (143)
                      |++.|||.+|.+||.+++.++++|+ +++|      ++++|+++||++|+.+|++||||+||++||..+..
T Consensus         1 Mk~~elr~ls~~eL~~~l~~lkkeL~~lR~------~~~~~~~~n~~~i~~~rk~IARi~Tvl~er~~~~~   65 (66)
T PRK00306          1 MKAKELRELSVEELNEKLLELKKELFNLRF------QKATGQLENTHRLREVRRDIARIKTVLRERELGAA   65 (66)
T ss_pred             CCHHHHhhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6789999999999999999999999 9999      99999999999999999999999999999987653

>PRK14549 50S ribosomal protein L29P; Provisional

Probab=99.69  E-value=9.3e-17  Score=110.50  Aligned_cols=62  Identities=27%  Similarity=0.253  Sum_probs=59.7

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCC-CCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLK-FPNPERIPKVRKSMCRIKQVLTERAIE  126 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~q-l~np~rirkVRrtIARIkTVL~ER~~a  126 (143)
                      +++.|||.+|.+||.+.+.++.+|+ |++|      ++++|+ ++||++|+.||++||||+||++||...
T Consensus         4 mk~~elr~ls~~eL~~~l~elk~eLf~LR~------q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ek~~~   67 (69)
T PRK14549          4 LRASEIREMSPEEREEKLEELKLELLKERA------QAAMGGAPENPGRIREIRRTIARILTIQREKKRE   67 (69)
T ss_pred             CcHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCcCccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999 9999      999999 999999999999999999999999753

>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.66  E-value=2.3e-16  Score=104.86  Aligned_cols=57  Identities=37%  Similarity=0.469  Sum_probs=55.6

Q ss_pred             hHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 032302           61 ASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTER  123 (143)
Q Consensus        61 ~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER  123 (143)
                      ++|||.+|.+||.+.+.++++|+ +++|      |+++|+++||++++.+|++||||+||++||
T Consensus         1 ~~elr~ls~~eL~~~l~elk~eL~~Lr~------q~~~~~l~n~~~ir~~Rr~IARi~Tvl~er   58 (58)
T PF00831_consen    1 AKELRELSDEELQEKLEELKKELFNLRF------QKATGQLENPHRIREIRRDIARILTVLRER   58 (58)
T ss_dssp             CHHHCHSHHHHHHHHHHHHHHHHHHHHH------HHHHSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcccccccHHHHHHHHHHHHHHHHhcC
Confidence            57999999999999999999999 9999      999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....

>PRK00461 rpmC 50S ribosomal protein L29; Reviewed

Probab=99.65  E-value=4.9e-16  Score=111.62  Aligned_cols=63  Identities=32%  Similarity=0.420  Sum_probs=59.8

Q ss_pred             ChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302           60 KASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEP  128 (143)
Q Consensus        60 k~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~  128 (143)
                      ++.|||.+|.+||.+.+.++++|+ +++|      |+++|+++||++|+.+|++||||+||++||..+..
T Consensus         1 ~~~elR~lS~eEL~e~L~elkkELf~LR~------q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~~~   64 (87)
T PRK00461          1 LFKELRKKSVEELEKLVIELKAELFTLRF------KNATGSLDQTHKIKEIRKDIARILTILNERELEEK   64 (87)
T ss_pred             ChHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            367999999999999999999999 9999      99999999999999999999999999999987654

>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP

Probab=99.64  E-value=4e-16  Score=103.30  Aligned_cols=56  Identities=43%  Similarity=0.534  Sum_probs=54.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 032302           62 SELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTER  123 (143)
Q Consensus        62 ~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER  123 (143)
                      .|||.+|.+||.+.+.++++|+ +++|      |+++|+++||++++.+|++||||+||++||
T Consensus         1 ~eir~ls~~eL~~~l~~l~~elf~Lr~------q~~~~~~~~~~~~~~~Rr~IARi~Til~er   57 (57)
T cd00427           1 KELREKSDEELQEKLDELKKELFNLRF------QKATGQLENPHRIRKVRKDIARIKTVLNEK   57 (57)
T ss_pred             ChHHHCCHHHHHHHHHHHHHHHHHHHH------HHHHCCCcCcHHHHHHHHHHHHHHHHHHcC
Confidence            4899999999999999999999 9999      999999999999999999999999999986

L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat

>TIGR00012 L29 ribosomal protein L29

Probab=99.59  E-value=2.1e-15  Score=99.42  Aligned_cols=54  Identities=35%  Similarity=0.464  Sum_probs=52.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 032302           63 ELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTE  122 (143)
Q Consensus        63 ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~E  122 (143)
                      |||.+|.+||.+...++++|+ +++|      |+++|++.||++++.+|++||||+||++|
T Consensus         1 elr~~s~~EL~~~l~~lr~eLf~Lr~------~~~~~~~~~~~~i~~~Rk~IARi~Tvl~e   55 (55)
T TIGR00012         1 ELREKSKEELAKKLDELKKELFELRF------QKATGQLAKPHRIRQVRRDIARLLTVLRE   55 (55)
T ss_pred             CHhhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCcccchHHHHHHHHHHHHHHHHhC
Confidence            699999999999999999999 9999      99999999999999999999999999985

called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.

>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=2.2e-07  Score=70.47  Aligned_cols=60  Identities=32%  Similarity=0.257  Sum_probs=52.8

Q ss_pred             ChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCC-CCcchHHHHHHHHHHHHHHHHHHh
Q 032302           60 KASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFP-NPERIPKVRKSMCRIKQVLTERAI  125 (143)
Q Consensus        60 k~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~-np~rirkVRrtIARIkTVL~ER~~  125 (143)
                      ++.|||.+|-++|.+.+.+|..|+ .|+.      +..+|.-+ +-+.|+.||++|||+.||++|++.
T Consensus         5 k~~eLr~~~ke~L~~ql~dLK~ELa~LRv------~K~tgg~~~klskik~vrKsiArvLTVine~~k   66 (123)
T KOG3436|consen    5 KARELRGKSKEQLLKQLDDLKVELAQLRV------AKVTGGAASKLSKIKVVRKSIARVLTVINEKQK   66 (123)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHhhccchhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence            567999999999999999999999 8887      77776533 457899999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
3r8s_Y	63	50S ribosomal protein L29; protein biosynthesis, R	7e-05
1vq8_V	71	50S ribosomal protein L29P; ribosome 50S, protein-	7e-05
1r73_A	66	TM1492, 50S ribosomal protein L29; ribosome, struc	2e-04

>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ... Length = 63

 Score = 37.6 bits (88), Expect = 7e-05
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KA ELR KS ++LN     LL+E+  L  Q       + +      + +VR+ + R+K +
Sbjct: 2   KAKELREKSVEELNTELLNLLREQFNLRMQAA-----SGQLQQSHLLKQVRRDVARVKTL 56

Query: 120 LTERA 124
           L E+A
Sbjct: 57  LNEKA 61

>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ... Length = 71

 Score = 37.7 bits (88), Expect = 7e-05
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
              E+R  +  +       L  E       Q    A      NP RI ++RK++ RIK +
Sbjct: 5   HVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPE----NPGRIKELRKAIARIKTI 60

Query: 120 LTERAIEE 127
             E    +
Sbjct: 61  QGEEGDLQ 68

>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1 Length = 66

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELR  + ++L  L     ++   L  Q  M      +  N   I   ++ + RIK +
Sbjct: 2   KASELRNYTDEELKNLLEEKKRQLMELRFQLAMG-----QLKNTSLIKLTKRDIARIKTI 56

Query: 120 LTERAI 125
           L ER +
Sbjct: 57  LREREL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2zjr_V	67	50S ribosomal protein L29; ribosome, large ribosom	99.81
1r73_A	66	TM1492, 50S ribosomal protein L29; ribosome, struc	99.81
1vq8_V	71	50S ribosomal protein L29P; ribosome 50S, protein-	99.8
3r8s_Y	63	50S ribosomal protein L29; protein biosynthesis, R	99.8
3v2d_2	72	50S ribosomal protein L29; ribosome associated inh	99.8
3j21_W	72	50S ribosomal protein L29P; archaea, archaeal, KIN	99.77
3iz5_c	124	60S ribosomal protein L35 (L29P); eukaryotic ribos	99.66
2zkr_v	123	60S ribosomal protein L35; protein-RNA complex, 60	99.66
4a17_U	124	RPL35, 60S ribosomal protein L21; eukaryotic ribos	99.65
3jyw_X	86	60S ribosomal protein L35; eukaryotic ribosome, RA	99.64
3bbo_Z	173	Ribosomal protein L29; large ribosomal subunit, sp	99.64
3u5e_h	120	60S ribosomal protein L35-A, 60S ribosomal protein	99.61

>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y

Probab=99.81  E-value=2.1e-20  Score=126.99  Aligned_cols=64  Identities=23%  Similarity=0.275  Sum_probs=61.1

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEP  128 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~  128 (143)
                      |++.|||.||.+||++.+.++++|+ |++|      |+++|+++||++|+.||++||||+||++||..+..
T Consensus         1 Mk~~elr~~s~~EL~~~l~elk~ELf~LR~------q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~~~   65 (67)
T 2zjr_V            1 MKPSEMRNLQATDFAKEIDARKKELMELRF------QAAAGQLAQPHRVRQLRREVAQLNTVKAELARKGE   65 (67)
T ss_dssp             CCSTTTTTSCHHHHHHHHHTHHHHHHHHHH------HHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999999999999 9999      99999999999999999999999999999987654

>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1

Probab=99.81  E-value=5e-20  Score=124.81  Aligned_cols=62  Identities=26%  Similarity=0.316  Sum_probs=59.7

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIE  126 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a  126 (143)
                      |++.|||.||.+||++.+.++++|+ |++|      |+++||++||++|+.||++||||+||++||+.+
T Consensus         1 MK~~elr~~s~~EL~~~l~elk~ELf~LR~------q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~   63 (66)
T 1r73_A            1 MKASELRNYTDEELKNLLEEKKRQLMELRF------QLAMGQLKNTSLIKLTKRDIARIKTILRERELG   63 (66)
T ss_dssp             CCCSHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CChHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHccCccCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6789999999999999999999999 9999      999999999999999999999999999999863

>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...

Probab=99.80  E-value=9.2e-20  Score=125.13  Aligned_cols=63  Identities=24%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhh-CCCCCCcchHHHHHHHHHHHHHHHHHHhhC
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQN-LKFPNPERIPKVRKSMCRIKQVLTERAIEE  127 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~-~ql~np~rirkVRrtIARIkTVL~ER~~a~  127 (143)
                      |++.|||.||.+||.+.+.++++|+ |++|      |+++ ||++||++|+.|||+||||+||++||+.+.
T Consensus         4 mk~~elr~~s~~EL~~~l~elk~ELf~LR~------q~atggql~n~~~ir~vRr~IARi~Tvl~er~~~~   68 (71)
T 1vq8_V            4 LHVQEIRDMTPAEREAELDDLKTELLNARA------VQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQ   68 (71)
T ss_dssp             SCHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcCCccChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999 9999      9999 799999999999999999999999998764

>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...

Probab=99.80  E-value=1.8e-20  Score=125.94  Aligned_cols=61  Identities=36%  Similarity=0.494  Sum_probs=59.0

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAI  125 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~  125 (143)
                      |++.|||.||.+||++.+.++++|+ |++|      |+++||++||++|+.|||+||||+||++||+.
T Consensus         1 MK~~elr~~s~~EL~~~l~elk~Elf~LR~------q~atgql~n~~~ir~vRr~IARi~Tvl~er~~   62 (63)
T 3r8s_Y            1 MKAKELREKSVEELNTELLNLLREQFNLRM------QAASGQLQQSHLLKQVRRDVARVKTLLNEKAG   62 (63)
T ss_dssp             CCGGGTTSCHHHHHHHHHHHHTHHHHHHHH------HHHTTCCSCGGGTHHHHHHHHHHHHTTTSSTT
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCCcCcHHHHHHHHHHHHHHHHHHHhhc
Confidence            6899999999999999999999999 9999      99999999999999999999999999999864

>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...

Probab=99.80  E-value=9.6e-20  Score=125.42  Aligned_cols=64  Identities=20%  Similarity=0.207  Sum_probs=61.2

Q ss_pred             CCCChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302           57 RSWKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIE  126 (143)
Q Consensus        57 RaWk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a  126 (143)
                      ..|++.|||.+|.+||.+.+.++++|+ |++|      |+++||++||++|+.|||+||||+||++||+.+
T Consensus         6 ~~mK~~elr~~s~eEL~~~L~elk~ELf~LR~------q~atgql~n~~~ir~vRr~IARi~Tvl~er~~~   70 (72)
T 3v2d_2            6 VRKQLEEARKLSPVELEKLVREKKRELMELRF------QASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQ   70 (72)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHTTCCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            348899999999999999999999999 9999      999999999999999999999999999999765

>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.77  E-value=1e-18  Score=120.31  Aligned_cols=64  Identities=20%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCC-CCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLK-FPNPERIPKVRKSMCRIKQVLTERAIEEP  128 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~q-l~np~rirkVRrtIARIkTVL~ER~~a~~  128 (143)
                      |++.|||.+|.+||.+.+.++++|+ ||+|      |+++|| ++||++|+.||++||||+||++||+.+..
T Consensus         1 MK~~elr~~s~~EL~~~L~elk~ELf~LR~------q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~   66 (72)
T 3j21_W            1 MKPSEIREMSIEEIDAKIRELRLQLAKERG------LLTMGTSLENPMVIRNLRRDIARLLTIKKEKLRERE   66 (72)
T ss_dssp             CCHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999 9999      999999 99999999999999999999999987643

>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.66  E-value=1.4e-16  Score=119.67  Aligned_cols=64  Identities=27%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhC-CCCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNL-KFPNPERIPKVRKSMCRIKQVLTERAIEEP  128 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~-ql~np~rirkVRrtIARIkTVL~ER~~a~~  128 (143)
                      |++.|||.+|.+||.+.+.++++|+ ||+|      |+++| +++||++|+.||++||||+||++|++.+..
T Consensus         4 mK~~ELR~~s~eEL~~~L~eLK~ELf~LRf------q~atgq~len~~rir~vRrdIARI~Tvl~er~~~~l   69 (123)
T 2zkr_v            4 IKARDLRGKKKEELLKQLDDLKVELSQLRV------AKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENL   69 (123)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHHHHHHHHHHH------HHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999 9999      99999 599999999999999999999999987643

>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U

Probab=99.65  E-value=8.2e-17  Score=121.09  Aligned_cols=63  Identities=19%  Similarity=0.152  Sum_probs=60.4

Q ss_pred             CCChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhC-CCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302           58 SWKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNL-KFPNPERIPKVRKSMCRIKQVLTERAIE  126 (143)
Q Consensus        58 aWk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~-ql~np~rirkVRrtIARIkTVL~ER~~a  126 (143)
                      .+++.|||.+|.+||.+.+.++.+|+ ||+|      |+++| +++||++|+.||++||||+|||+|++.+
T Consensus         4 ~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRf------q~atggqlen~~rIr~vRRdIARi~Tvl~er~~~   68 (124)
T 4a17_U            4 SVRVFKLRTQTEEQLVGELGKLQTELSQLRI------AKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQ   68 (124)
T ss_dssp             CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999 9999      99999 9999999999999999999999999765

>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=99.64  E-value=1e-17  Score=119.07  Aligned_cols=62  Identities=29%  Similarity=0.267  Sum_probs=59.1

Q ss_pred             CCChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhC
Q 032302           58 SWKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEE  127 (143)
Q Consensus        58 aWk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~  127 (143)
                      .|++.|||.||.+||.+.+.++++|+ ||+|      |+.+||+  |++|+.|||+||||+|||+||+.+.
T Consensus         2 ~MKa~ELR~~S~eEL~~~L~eLK~ELf~LRf------q~atgql--p~rIr~vRRdIARikTvl~er~~~~   64 (86)
T 3jyw_X            2 GVKAYELRTKSKEQLASQLVDLKKELAELKV------QKLSRPS--LPKIKTVRKSIACVLTVINEQQAAA   64 (86)
T ss_dssp             CSCHHHHHTSCHHHHHHHHHHHTTTHHHHHH------HHHTCCC--HHHHTCCSTTTHHHHTTTTHHHHHH
T ss_pred             CCCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHHCCC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999 9999      9999999  9999999999999999999997653

>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.64  E-value=1.2e-16  Score=125.81  Aligned_cols=73  Identities=21%  Similarity=0.191  Sum_probs=59.9

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCCC-hhhHHHH
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEPD-PRRSAEM  136 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~~-~~~~~~~  136 (143)
                      .++.|||.||.+||.+.+.++++|+ ||+|      |+++||++||++|+.|||+||||+|||+||+.+... .+.+..+
T Consensus        65 ~Ka~ELR~lS~eEL~ekL~eLKkELFnLRf------QkATGQLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk~  138 (173)
T 3bbo_Z           65 AELKEIRSKTTEQLQEEVVDLKGELFMLRL------QKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKL  138 (173)
T ss_dssp             SCHHHHHHSCHHHHHHHHHHHTTHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            7899999999999999999999999 9999      999999999999999999999999999999886543 3333343


Q ss_pred             H
Q 032302          137 K  137 (143)
Q Consensus       137 ~  137 (143)
                      +
T Consensus       139 ~  139 (173)
T 3bbo_Z          139 D  139 (173)
T ss_dssp             -
T ss_pred             H
Confidence            3

>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h

Probab=99.61  E-value=1.7e-15  Score=113.37  Aligned_cols=60  Identities=32%  Similarity=0.284  Sum_probs=58.1

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIE  126 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a  126 (143)
                      +++.|||++|.+||.+.+.++.+|+ ||+|      |+++||+  |++|+.||++||||+|||+|++.+
T Consensus         4 mK~~ELR~~s~eEL~~~L~eLK~ELf~LRf------q~atgql--~~~Ir~vRR~IARi~Tvl~er~~~   64 (120)
T 3u5e_h            4 VKAYELRTKSKEQLASQLVDLKKELAELKV------QKLSRPS--LPKIKTVRKSIACVLTVINEQQRE   64 (120)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHHHHHHHHHHH------HHTTSSC--CTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHHCCc--chhHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999 9999      9999999  999999999999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d2gycw1	60	a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Esc	5e-07
d2zjrv1	66	a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Dei	6e-07
d1r73a_	66	a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermot	7e-07
d1vqov1	65	a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Arc	8e-06

>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]} Length = 60

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (100), Expect = 5e-07
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KA ELR KS ++LN     LL+E+  L  Q         +      + +VR+ + R+K +
Sbjct: 2   KAKELREKSVEELNTELLNLLREQFNLRMQAASG-----QLQQSHLLKQVRRDVARVKTL 56

Query: 120 LTER 123
           L E+
Sbjct: 57  LNEK 60

>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]} Length = 66

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 42.3 bits (100), Expect = 6e-07
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           K SE+R     D  K      KE   L  Q             P R+ ++R+ + ++  V
Sbjct: 2   KPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQ-----PHRVRQLRREVAQLNTV 56

Query: 120 LTERAIE 126
             E A +
Sbjct: 57  KAELARK 63

>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]} Length = 66

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (99), Expect = 7e-07
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
           KASELR  + ++L  L     ++   L  Q  M   +N        I   ++ + RIK +
Sbjct: 2   KASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLKN-----TSLIKLTKRDIARIKTI 56

Query: 120 LTERAI 125
           L ER +
Sbjct: 57  LREREL 62

>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 65

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 39.2 bits (92), Expect = 8e-06
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 60  KASELRLKSWDDLNKLWYVLLKEKNMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQV 119
              E+R  +  +       L  E       Q    A      NP RI ++RK++ RIK +
Sbjct: 4   HVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGA----PENPGRIKELRKAIARIKTI 59

Query: 120 LTERA 124
             E  
Sbjct: 60  QGEEG 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2zjrv1	66	Ribosomal protein L29 (L29p) {Deinococcus radiodur	99.79
d1r73a_	66	Ribosomal protein L29 (L29p) {Thermotoga maritima	99.78
d2gycw1	60	Ribosomal protein L29 (L29p) {Escherichia coli [Ta	99.77
d1vqov1	65	Ribosomal protein L29 (L29p) {Archaeon Haloarcula	99.74
d2j0121	51	Ribosomal protein L29 (L29p) {Thermus thermophilus	99.38

>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.79  E-value=4.1e-20  Score=123.56  Aligned_cols=64  Identities=23%  Similarity=0.275  Sum_probs=61.3

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEP  128 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~  128 (143)
                      |++.|||.||.+||.+++.++.+|+ |++|      |+++||++||++|+.|||+||||+||++||..+.+
T Consensus         1 MK~~elr~~s~~eL~~~l~~lk~elf~LRf------q~~tgql~n~~~ik~~Rk~IARi~Tvl~er~~~~~   65 (66)
T d2zjrv1           1 MKPSEMRNLQATDFAKEIDARKKELMELRF------QAAAGQLAQPHRVRQLRREVAQLNTVKAELARKGE   65 (66)
T ss_dssp             CCSTTTTTSCHHHHHHHHHTHHHHHHHHHH------HHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            6899999999999999999999999 9999      99999999999999999999999999999987654

>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=1.7e-19  Score=120.47  Aligned_cols=64  Identities=25%  Similarity=0.288  Sum_probs=61.2

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHhhCC
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERAIEEP  128 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~~a~~  128 (143)
                      |++.|||.+|.+||.+.+.++.+|+ +++|      |+++||++||++|+.+|++||||+||++||+.+..
T Consensus         1 MK~~elr~ls~~eL~~~l~~l~~el~~LRf------q~~~gql~~~~~i~~~Rk~IARi~Tvl~er~~~~~   65 (66)
T d1r73a_           1 MKASELRNYTDEELKNLLEEKKRQLMELRF------QLAMGQLKNTSLIKLTKRDIARIKTILRERELGIR   65 (66)
T ss_dssp             CCCSHHHHSCHHHHHHHHHHHHHHHHHHHH------HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHHCCCCChHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            6889999999999999999999999 9999      99999999999999999999999999999987643

>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.2e-19  Score=119.12  Aligned_cols=59  Identities=36%  Similarity=0.522  Sum_probs=57.7

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTER  123 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER  123 (143)
                      |++.|||.+|.+||.+.+.++.+|+ +++|      |+++||++||++++.+|++||||+||++||
T Consensus         1 Mk~~elr~ls~~eL~~~l~~l~~el~~lRf------q~~~gql~~~~~i~~~Rk~IARi~Tvl~ek   60 (60)
T d2gycw1           1 MKAKELREKSVEELNTELLNLLREQFNLRM------QAASGQLQQSHLLKQVRRDVARVKTLLNEK   60 (60)
T ss_dssp             CCHHHHHHSCHHHHHHHHHHHHHHHHHCCC------STTTCSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHhCCHHHHHHHHHHHHHHHHHHHH------HHHHCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence            7899999999999999999999999 9999      999999999999999999999999999986

>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.74  E-value=2.1e-18  Score=114.93  Aligned_cols=60  Identities=27%  Similarity=0.252  Sum_probs=58.0

Q ss_pred             CChHHHhcCCHHHHHHHHHHHHHHH-hhh-chHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 032302           59 WKASELRLKSWDDLNKLWYVLLKEK-NML-MTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQVLTERA  124 (143)
Q Consensus        59 Wk~~ELR~KS~eDLhkLw~~LlKEr-Nlr-~Te~~~~q~~~~ql~np~rirkVRrtIARIkTVL~ER~  124 (143)
                      +++.|||.+|.+||.+.+.++.+|+ |++ |      |+++||++||++|+.+||+||||+||++||.
T Consensus         3 mK~~elr~ls~~eL~~~l~elk~El~~LR~~------q~~~gql~~~~~ik~~Rk~IARi~Tvl~ek~   64 (65)
T d1vqov1           3 LHVQEIRDMTPAEREAELDDLKTELLNARAV------QAAGGAPENPGRIKELRKAIARIKTIQGEEG   64 (65)
T ss_dssp             SCHHHHHTSCHHHHHHHHHHHHHHHHHHHHH------HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHhCCHHHHHHHHHHHHHHHHHHHHH------HHHhCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999999 998 7      8999999999999999999999999999985

>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Ribosomal protein L29 (L29p)
family: Ribosomal protein L29 (L29p)
domain: Ribosomal protein L29 (L29p)
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=9.7e-16  Score=97.67  Aligned_cols=50  Identities=20%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHHH-hhhchHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 032302           63 ELRLKSWDDLNKLWYVLLKEK-NMLMTQQQMLHAQNLKFPNPERIPKVRKSMCRIKQ  118 (143)
Q Consensus        63 ELR~KS~eDLhkLw~~LlKEr-Nlr~Te~~~~q~~~~ql~np~rirkVRrtIARIkT  118 (143)
                      |||.||.+||.+.+.++.+|+ |++|      |+++||++||++|+++||+||||+|
T Consensus         1 EiR~ls~~eL~~~l~elk~el~~LRf------q~atgql~n~~~ik~~rk~IARi~T   51 (51)
T d2j0121           1 EARKLSPVELEKLVREKKRELMELRF------QASIGQLSQNHKIRDLKRQIARLLT   51 (51)
T ss_dssp             CCTTTHHHHHHHHHHHHHHHSSSSCC------TTSSTTTGGGTTSSSSSCCCCCCC-
T ss_pred             ChhhCCHHHHHHHHHHHHHHHHHHHH------HHHHCCCcchHHHHHHHHHHHHhcC
Confidence            799999999999999999999 9999      9999999999999999999999987