Citrus Sinensis ID: 032310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEGSN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccEEcccccHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHcHHHccHHHHcccccHHHHHHHccHHHcccccccccccccc
Coil and Loop (DISEMBL)
measraegkrslkeddqeeeeddedsgggiageedkikkkgkrgsssagaggpttfVSCQVENCRanmtdakkyhrrhkvcdfhakapvvRVEGLAQRFCQQCsrfhelsefddtkRSCRRRLAGhnerrrkssadyhgegsn
Flexible Loop (DISEMBL)
measraegkrslkeddqeeeeddedsgggiageedkikkkgkrgsssagaggpttfvscQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRfhelsefddtkrscrrrlaghnerrrkssadyhgegsn
Low Complexity Region (SEG)
MEASRAEGKRSLKeddqeeeeddedsgggiageedkikkkgkrgsssagaggPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEGSN
Disordered region (IsUnstruct)
******************************************************TFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELS*********************************
Disordered Region (DISOPRED)
************************************************************VENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKR**************************
Disordered Region (DISEMBL)
****************************GIAGEEDK***************GPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRL********************
Disordered Region (DISPRO)
******************************************************TFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRR*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEGSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q38741	131	Squamosa promoter-binding	N/A	no	0.916	1.0	0.615	2e-39
P93015	131	Squamosa promoter-binding	yes	no	0.895	0.977	0.613	3e-35
Q38740	171	Squamosa promoter-binding	N/A	no	0.664	0.555	0.694	2e-33
Q9S758	181	Squamosa promoter-binding	no	no	0.587	0.464	0.702	5e-30
Q9S7P5	927	Squamosa promoter-binding	no	no	0.685	0.105	0.581	7e-30
Q9S7A9	174	Squamosa promoter-binding	no	no	0.692	0.568	0.634	9e-30
Q6Z461	216	Squamosa promoter-binding	yes	no	0.580	0.384	0.726	2e-29
Q7XT42	360	Squamosa promoter-binding	yes	no	0.545	0.216	0.705	2e-28
Q01JD1	360	Squamosa promoter-binding	N/A	no	0.545	0.216	0.705	3e-28
Q9SMX9	881	Squamosa promoter-binding	no	no	0.587	0.095	0.630	3e-27

>sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 98/138 (71%), Gaps = 7/138 (5%)

Query: 1   MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTFVSCQ 60
           M+ S+ EGKR +K    +E+ ++ED  G  + +   +   GKR S S       T  SCQ
Sbjct: 1   MDTSKGEGKRVIKLPGSQEQGEEEDDIGEDSKKTRALTPSGKRASGS-------TQRSCQ 53

Query: 61  VENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCR 120
           VENC A MT+AK YHRRHKVC+FHAKAPVV   GL QRFCQQCSRFHELSEFD+ KRSCR
Sbjct: 54  VENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCR 113

Query: 121 RRLAGHNERRRKSSADYH 138
           RRLAGHNERRRKSS D H
Sbjct: 114 RRLAGHNERRRKSSHDTH 131

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Antirrhinum majus (taxid: 4151)

>sp|P93015|SPL3_ARATH Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 103/137 (75%), Gaps = 9/137 (6%)

Query: 1   MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGK-RGSSSAGAGGPTTFVSC 59
           M  S+AEGKRSL+E  +EEEE++E        EE+ ++KK K + +SS+G         C
Sbjct: 3   MRRSKAEGKRSLRELSEEEEEEEETEDEDTFEEEEALEKKQKGKATSSSGV--------C 54

Query: 60  QVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSC 119
           QVE+C A+M+ AK+YH+RHKVC FHAKAP VR+ GL QRFCQQCSRFH LSEFD+ KRSC
Sbjct: 55  QVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRSC 114

Query: 120 RRRLAGHNERRRKSSAD 136
           RRRLAGHNERRRKS+ D
Sbjct: 115 RRRLAGHNERRRKSTTD 131

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Promotes both vegetative phase change and flowering. Regulates phase-specific patterns of leaf epidermal differentiation and flowering time, but does not seem to affect leaf shape.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 76/95 (80%)

Query: 47  SAGAGGPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRF 106
           +A  GG      C VENC A++ + KKY++RH+VC+ HAKAPVV VEGL QRFCQQCSRF
Sbjct: 73  TASGGGVVAQPCCLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRF 132

Query: 107 HELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEG 141
           H+LSEFD TKRSCRRRLAGHNERRRKSS + H EG
Sbjct: 133 HDLSEFDQTKRSCRRRLAGHNERRRKSSLESHKEG 167

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Antirrhinum majus (taxid: 4151)

>sp|Q9S758|SPL5_ARATH Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1

 Score =  129 bits (325), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 68/84 (80%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQV+ C  N+T+AK+Y+RRH+VC+ HAKA    V G+ QRFCQQCSRFHEL EFD+ KRS
Sbjct: 63  CQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRS 122

Query: 119 CRRRLAGHNERRRKSSADYHGEGS 142
           CRRRLAGHNERRRK S D  GEGS
Sbjct: 123 CRRRLAGHNERRRKISGDSFGEGS 146

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 73/98 (74%)

Query: 46  SSAGAGGPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSR 105
           +  G G P+  + CQV+NC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSR
Sbjct: 114 TKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSR 173

Query: 106 FHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGEGSN 143
           FH L EFD+ KRSCRRRLAGHN+RRRK++ D  G G++
Sbjct: 174 FHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7A9|SPL4_ARATH Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1

 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 78/104 (75%), Gaps = 5/104 (4%)

Query: 40  KGKRGSSSAGAGGPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRF 99
           +G RGS + G     +   CQV+ C A+M +AK YHRRHKVC+ HAKA  V + GL QRF
Sbjct: 39  RGSRGSINRGG----SLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRF 94

Query: 100 CQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSAD-YHGEGS 142
           CQQCSRFH+L EFD+ KRSCRRRLAGHNERRRKSS +  +GEGS
Sbjct: 95  CQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGS 138

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z461|SPL13_ORYSJ Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/84 (72%), Positives = 70/84 (83%), Gaps = 1/84 (1%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQVE C  ++++A +Y+RRHKVC  H+K PVV V GL QRFCQQCSRFHEL+EFDD KRS
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169

Query: 119 CRRRLAGHNERRRKSSADY-HGEG 141
           CRRRLAGHNERRRKS+AD  HGE 
Sbjct: 170 CRRRLAGHNERRRKSAADTAHGEN 193

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XT42|SPL7_ORYSJ Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 62/78 (79%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQVE C   +   K+YHRRHKVC+ HAKAP V V G  QRFCQQCSRFH L+EFDD K+S
Sbjct: 108 CQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKS 167

Query: 119 CRRRLAGHNERRRKSSAD 136
           CRRRLAGHNERRR+S+A 
Sbjct: 168 CRRRLAGHNERRRRSNAS 185

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01JD1|SPL7_ORYSI Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1

 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 62/78 (79%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQVE C   +   K+YHRRHKVC+ HAKAP V V G  QRFCQQCSRFH L+EFDD K+S
Sbjct: 108 CQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDAKKS 167

Query: 119 CRRRLAGHNERRRKSSAD 136
           CRRRLAGHNERRR+S+A 
Sbjct: 168 CRRRLAGHNERRRRSNAS 185

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 65/84 (77%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQVENC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSRFH L EFD+ KRS
Sbjct: 106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRS 165

Query: 119 CRRRLAGHNERRRKSSADYHGEGS 142
           CRRRLAGHN+RRRK++ +    G+
Sbjct: 166 CRRRLAGHNKRRRKTNPEPGANGN 189

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
255536767	141	Squamosa promoter-binding protein, putat	0.972	0.985	0.692	2e-40
224125392	144	hypothetical protein POPTRDRAFT_743829 [	0.993	0.986	0.696	7e-39
6094239	131	RecName: Full=Squamosa promoter-binding	0.916	1.0	0.615	1e-37
224128280	111	predicted protein [Populus trichocarpa]	0.776	1.0	0.650	8e-37
111183167	136	squamosa promoter binding-like protein [	0.930	0.977	0.564	1e-35
225443638	140	PREDICTED: squamosa promoter-binding pro	0.895	0.914	0.616	3e-35
388508340	144	unknown [Medicago truncatula]	0.979	0.972	0.590	1e-34
297823181	130	hypothetical protein ARALYDRAFT_482334 [	0.895	0.984	0.595	2e-34
255584731	198	Squamosa promoter-binding protein, putat	0.895	0.646	0.641	7e-34
225446416	169	PREDICTED: squamosa promoter-binding-lik	0.923	0.781	0.605	7e-34

>gi|255536767|ref|XP_002509450.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223549349|gb|EEF50837.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 120/143 (83%), Gaps = 4/143 (2%)

Query: 1   MEASRAEGKRSLKEDDQEEEEDDEDSGG-GIAGEEDKIKKKGKRGSSSAGAGGPTTFVSC 59
           M  S+AEGKRSLKE + +EEE+D++ GG G+   ED+ K+KGK+GSS++G+  P   VSC
Sbjct: 1   MATSKAEGKRSLKEMEDDEEEEDDEDGGCGLGFSEDEKKRKGKKGSSASGSMPP---VSC 57

Query: 60  QVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSC 119
           Q ENC  +MT+AK+YHRRHKVC+ HAKAP V V G+ QRFCQQCSRFHE+SEFDDTKRSC
Sbjct: 58  QAENCTFDMTEAKRYHRRHKVCEHHAKAPCVLVSGIHQRFCQQCSRFHEVSEFDDTKRSC 117

Query: 120 RRRLAGHNERRRKSSADYHGEGS 142
           RRRLAGHNERRRKSS++YHGEGS
Sbjct: 118 RRRLAGHNERRRKSSSEYHGEGS 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125392|ref|XP_002329794.1| hypothetical protein POPTRDRAFT_743829 [Populus trichocarpa] gi|222870856|gb|EEF07987.1| hypothetical protein POPTRDRAFT_743829 [Populus trichocarpa]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/145 (69%), Positives = 118/145 (81%), Gaps = 3/145 (2%)

Query: 1   MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAG--EEDKIKKKGKRGSSSAGAGGPTTFVS 58
           ME SRAEGKRSLKE + EEEE+D++   G  G  ++DKIKKKGK+GSS  G+      VS
Sbjct: 1   METSRAEGKRSLKEIEDEEEEEDDEDIAGGLGFVDDDKIKKKGKKGSSGGGSSS-MLLVS 59

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQ +NC +++ DAK+YHRRHKVC+FHAKAP   V GL QRFCQQCSRFH+LSEFDD+KRS
Sbjct: 60  CQADNCTSDLADAKRYHRRHKVCEFHAKAPFAPVNGLQQRFCQQCSRFHDLSEFDDSKRS 119

Query: 119 CRRRLAGHNERRRKSSADYHGEGSN 143
           CRRRLAGHNERRRKSSA+Y GEGSN
Sbjct: 120 CRRRLAGHNERRRKSSAEYQGEGSN 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6094239|sp|Q38741.1|SBP1_ANTMA RecName: Full=Squamosa promoter-binding protein 1 gi|1183866|emb|CAA63113.1| squamosa-promoter binding protein 1 [Antirrhinum majus]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 98/138 (71%), Gaps = 7/138 (5%)

Query: 1   MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTFVSCQ 60
           M+ S+ EGKR +K    +E+ ++ED  G  + +   +   GKR S S       T  SCQ
Sbjct: 1   MDTSKGEGKRVIKLPGSQEQGEEEDDIGEDSKKTRALTPSGKRASGS-------TQRSCQ 53

Query: 61  VENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCR 120
           VENC A MT+AK YHRRHKVC+FHAKAPVV   GL QRFCQQCSRFHELSEFD+ KRSCR
Sbjct: 54  VENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCR 113

Query: 121 RRLAGHNERRRKSSADYH 138
           RRLAGHNERRRKSS D H
Sbjct: 114 RRLAGHNERRRKSSHDTH 131

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128280|ref|XP_002329125.1| predicted protein [Populus trichocarpa] gi|222869794|gb|EEF06925.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 93/123 (75%), Gaps = 12/123 (9%)

Query: 21  EDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTFVSCQVENCRANMTDAKKYHRRHKV 80
           +D++  G G+          GKRG+ S GA  P    SCQVE C AN+TDAK+YHRRHKV
Sbjct: 1   DDEKKKGAGVM--------HGKRGTGSGGASPP----SCQVEKCGANLTDAKRYHRRHKV 48

Query: 81  CDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADYHGE 140
           C+ HAK+P V V GL QRFCQQCSRFHEL EFD+TKRSCRRRLAGHNERRRKS+A+ +GE
Sbjct: 49  CEVHAKSPAVVVAGLRQRFCQQCSRFHELVEFDETKRSCRRRLAGHNERRRKSTAESYGE 108

Query: 141 GSN 143
           GSN
Sbjct: 109 GSN 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|111183167|gb|ABH07904.1| squamosa promoter binding-like protein [Solanum lycopersicum]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 99/140 (70%), Gaps = 7/140 (5%)

Query: 1   MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTFVSCQ 60
           ME ++ EGKRS+ E ++EE+E      G +  EED  +K+    S     G  +   SCQ
Sbjct: 1   METNKWEGKRSITEAEKEEDEH-----GSV--EEDSKRKRVLTLSGRKLVGEGSAHPSCQ 53

Query: 61  VENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCR 120
           V+ C A+M DAK YHRRHKVC+FH+K+P+V + GL +RFCQQCSRFH L+EFDD KRSCR
Sbjct: 54  VDQCTADMADAKPYHRRHKVCEFHSKSPIVLISGLQKRFCQQCSRFHLLAEFDDAKRSCR 113

Query: 121 RRLAGHNERRRKSSADYHGE 140
           RRLAGHNERRRK + D HGE
Sbjct: 114 RRLAGHNERRRKITYDSHGE 133

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443638|ref|XP_002280052.1| PREDICTED: squamosa promoter-binding protein 1 [Vitis vinifera] gi|297740409|emb|CBI30591.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/133 (61%), Positives = 106/133 (79%), Gaps = 5/133 (3%)

Query: 1   MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGP-TTFVSC 59
           ME S+A+GKR+L E+++E++ED    G G    ED+ KKK    ++  G+GG  +T  SC
Sbjct: 1   MEMSKAQGKRTLMEEEEEDDEDTVGLGFG----EDEKKKKAVTLTNKKGSGGAGSTPPSC 56

Query: 60  QVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSC 119
           QV+NC A+M++AK+YH+RH+VC+ HAKAPV+ + G+ QRFCQQCSRFHELSEFDDTKRSC
Sbjct: 57  QVDNCTADMSEAKRYHKRHRVCEHHAKAPVILIAGIQQRFCQQCSRFHELSEFDDTKRSC 116

Query: 120 RRRLAGHNERRRK 132
           RRRLAGHNERRRK
Sbjct: 117 RRRLAGHNERRRK 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508340|gb|AFK42236.1| unknown [Medicago truncatula]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 101/144 (70%), Gaps = 4/144 (2%)

Query: 1   MEASRAEGKRSLK----EDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTF 56
           ME  R+EGKRSLK     +++EEEE+D D      G   ++        SS  AG     
Sbjct: 1   METRRSEGKRSLKYKEDHEEEEEEEEDTDFEEEEDGRRKRVVTDLYSKRSSKKAGSSNIP 60

Query: 57  VSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTK 116
             CQVENC A++++AK+YHRRHKVC++HAKAP V + GL QRFCQQCSRFH LSEFDD K
Sbjct: 61  PCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAGLQQRFCQQCSRFHGLSEFDDAK 120

Query: 117 RSCRRRLAGHNERRRKSSADYHGE 140
           RSCRRRLAGHNERRRKS+ DY GE
Sbjct: 121 RSCRRRLAGHNERRRKSAIDYQGE 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823181|ref|XP_002879473.1| hypothetical protein ARALYDRAFT_482334 [Arabidopsis lyrata subsp. lyrata] gi|297325312|gb|EFH55732.1| hypothetical protein ARALYDRAFT_482334 [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 103/136 (75%), Gaps = 8/136 (5%)

Query: 1   MEASRAEGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTFVSCQ 60
           M  S+AEGKRSL+E  +EEE+++ +       EE   KK+  + +SS+G         CQ
Sbjct: 3   MRRSKAEGKRSLREMSEEEEDEETEDEDTFEEEEALEKKQKAKATSSSGV--------CQ 54

Query: 61  VENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCR 120
           VE+C A+M+ AK+YH+RHKVC+FHAKAP+VR+ GL QRFCQQCSRFHELSEFD+ KRSCR
Sbjct: 55  VESCTADMSKAKQYHKRHKVCEFHAKAPLVRIYGLHQRFCQQCSRFHELSEFDEAKRSCR 114

Query: 121 RRLAGHNERRRKSSAD 136
           RRLAGHNERRRKS+ +
Sbjct: 115 RRLAGHNERRRKSTTE 130

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584731|ref|XP_002533086.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223527125|gb|EEF29301.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 99/134 (73%), Gaps = 6/134 (4%)

Query: 12  LKEDDQEEEEDDEDSGGGIAGEEDKIKKKG--KRGSSSAGAGGPTTFVSCQVENCRANMT 69
           L +DD EEEE    SGG   G  D  KKK    +   ++G GG  +  SCQVE C A++T
Sbjct: 28  LLDDDMEEEE----SGGSGVGFLDDEKKKVLHAKKGGTSGGGGGGSPPSCQVERCGADLT 83

Query: 70  DAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNER 129
           DAK+YHRRHKVC+ HAKAP V V GL QRFCQQCSRFHEL EFD+ KRSCRRRLAGHNER
Sbjct: 84  DAKRYHRRHKVCEIHAKAPAVVVAGLRQRFCQQCSRFHELVEFDEAKRSCRRRLAGHNER 143

Query: 130 RRKSSADYHGEGSN 143
           RRKSSA+ +GEGS+
Sbjct: 144 RRKSSAESYGEGSS 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446416|ref|XP_002275728.1| PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|302143318|emb|CBI21879.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 98/137 (71%), Gaps = 5/137 (3%)

Query: 7   EGKRSLKEDDQEEEEDDEDSGGGIAGEEDKIKKKGKRGSSSAGAGGPTTFVSCQVENCRA 66
           E K+ +K++ +  EE DED   G + E+DK KK    GS   G         CQ E C A
Sbjct: 2   EAKKMVKKEMEGTEEVDEDDQLGCS-EDDKKKKAAAGGS---GKKAAAAMRCCQAERCTA 57

Query: 67  NMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGH 126
           ++TDAK+YHRRHKVC+ HAKA VV V G+ QRFCQQCSRFHELSEFD+ KRSCRRRLAGH
Sbjct: 58  DLTDAKQYHRRHKVCEHHAKAQVVVVGGIRQRFCQQCSRFHELSEFDEAKRSCRRRLAGH 117

Query: 127 NERRRKSSADYHGEGSN 143
           NERRRK+SAD H EGS+
Sbjct: 118 NERRRKNSAD-HAEGSS 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2057656	131	SPL3 "squamosa promoter bindin	0.545	0.595	0.782	1.3e-34
TAIR|locus:2087105	181	SPL5 "squamosa promoter bindin	0.587	0.464	0.702	2.3e-30
TAIR|locus:2009675	174	SPL4 "squamosa promoter bindin	0.587	0.482	0.717	6.2e-30
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.636	0.098	0.604	2.8e-27
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.517	0.222	0.702	5.2e-26
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.517	0.182	0.702	8.4e-26
TAIR|locus:2041329	881	SPL1 "squamosa promoter bindin	0.587	0.095	0.630	1e-25
TAIR|locus:2159717	359	SPL13A "SQUAMOSA PROMOTER-BIND	0.594	0.236	0.564	2.9e-25
TAIR|locus:2832472	359	SPL13B "SQUAMOSA PROMOTER-BIND	0.594	0.236	0.564	2.9e-25
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.517	0.197	0.689	3.6e-25

TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 61/78 (78%), Positives = 69/78 (88%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             CQVE+C A+M+ AK+YH+RHKVC FHAKAP VR+ GL QRFCQQCSRFH LSEFD+ KRS
Sbjct:    54 CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRS 113

Query:   119 CRRRLAGHNERRRKSSAD 136
             CRRRLAGHNERRRKS+ D
Sbjct:   114 CRRRLAGHNERRRKSTTD 131

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 59/84 (70%), Positives = 68/84 (80%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             CQV+ C  N+T+AK+Y+RRH+VC+ HAKA    V G+ QRFCQQCSRFHEL EFD+ KRS
Sbjct:    63 CQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKRS 122

Query:   119 CRRRLAGHNERRRKSSADYHGEGS 142
             CRRRLAGHNERRRK S D  GEGS
Sbjct:   123 CRRRLAGHNERRRKISGDSFGEGS 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/85 (71%), Positives = 70/85 (82%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             CQV+ C A+M +AK YHRRHKVC+ HAKA  V + GL QRFCQQCSRFH+L EFD+ KRS
Sbjct:    54 CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 113

Query:   119 CRRRLAGHNERRRKSSADY-HGEGS 142
             CRRRLAGHNERRRKSS +  +GEGS
Sbjct:   114 CRRRLAGHNERRRKSSGESTYGEGS 138

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 55/91 (60%), Positives = 70/91 (76%)

Query:    53 PTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEF 112
             P+  + CQV+NC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSRFH L EF
Sbjct:   121 PSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEF 180

Query:   113 DDTKRSCRRRLAGHNERRRKSSADYHGEGSN 143
             D+ KRSCRRRLAGHN+RRRK++ D  G G++
Sbjct:   181 DEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 52/74 (70%), Positives = 60/74 (81%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             CQ E C A+++ AK YHRRHKVC+FH+KA  V   GL+QRFCQQCSRFH LSEFD+ KRS
Sbjct:   188 CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRS 247

Query:   119 CRRRLAGHNERRRK 132
             CR+RLA HN RRRK
Sbjct:   248 CRKRLADHNRRRRK 261

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 52/74 (70%), Positives = 60/74 (81%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             CQV  C  +++ +K YH+RH+VC+ H+K  VV V GL QRFCQQCSRFH LSEFDD KRS
Sbjct:   124 CQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRS 183

Query:   119 CRRRLAGHNERRRK 132
             CRRRLAGHNERRRK
Sbjct:   184 CRRRLAGHNERRRK 197

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 53/84 (63%), Positives = 65/84 (77%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             CQVENC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSRFH L EFD+ KRS
Sbjct:   106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRS 165

Query:   119 CRRRLAGHNERRRKSSADYHGEGS 142
             CRRRLAGHN+RRRK++ +    G+
Sbjct:   166 CRRRLAGHNKRRRKTNPEPGANGN 189

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 48/85 (56%), Positives = 63/85 (74%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             C V+ C ++ ++ ++YH+RHKVCD H+K PVV + G  QRFCQQCSRFH L EFD+ KRS
Sbjct:   101 CLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRS 160

Query:   119 CRRRLAGHNERRRKSSADYHGEGSN 143
             CR+RL GHN RRRK   ++ G  +N
Sbjct:   161 CRKRLDGHNRRRRKPQPEHIGRPAN 185

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 48/85 (56%), Positives = 63/85 (74%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             C V+ C ++ ++ ++YH+RHKVCD H+K PVV + G  QRFCQQCSRFH L EFD+ KRS
Sbjct:   101 CLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFCQQCSRFHALEEFDEGKRS 160

Query:   119 CRRRLAGHNERRRKSSADYHGEGSN 143
             CR+RL GHN RRRK   ++ G  +N
Sbjct:   161 CRKRLDGHNRRRRKPQPEHIGRPAN 185

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0048653 "anther development" evidence=IMP

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 51/74 (68%), Positives = 59/74 (79%)

Query:    59 CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
             CQVE C  ++T+AK Y+ RH+VC  H+K P V V G+ QRFCQQCSRFH+L EFD  KRS
Sbjct:    74 CQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRS 133

Query:   119 CRRRLAGHNERRRK 132
             CRRRLAGHNERRRK
Sbjct:   134 CRRRLAGHNERRRK 147

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38741	SBP1_ANTMA	No assigned EC number	0.6159	0.9160	1.0	N/A	no
Q6Z461	SPL13_ORYSJ	No assigned EC number	0.7261	0.5804	0.3842	yes	no
P93015	SPL3_ARATH	No assigned EC number	0.6131	0.8951	0.9770	yes	no
Q7XT42	SPL7_ORYSJ	No assigned EC number	0.7051	0.5454	0.2166	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_1240186 hypothetical protein (144 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam03110	79	pfam03110, SBP, SBP domain	5e-46

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  143 bits (364), Expect = 5e-46
 Identities = 59/78 (75%), Positives = 66/78 (84%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQVE C A++++AK YHRRHKVC+ H+KAPVV V GL QRFCQQCSRFH LSEFD+ KRS
Sbjct: 2   CQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKRS 61

Query: 119 CRRRLAGHNERRRKSSAD 136
           CRRRLAGHNERRRK   D
Sbjct: 62  CRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=1.9e-43  Score=251.65  Aligned_cols=78  Identities=65%  Similarity=1.161  Sum_probs=63.1

Q ss_pred             ccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccccccchHHHHHhhHHHhhccCCC
Q 032310           58 SCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSA  135 (143)
Q Consensus        58 ~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~RRRk~~~  135 (143)
                      +||||||++||+.+|.||+||+||+.|++||+|+++|+.+||||||++||+|+||||+|||||++|++||+|||++.+
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999864

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		5e-27
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		2e-17
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		8e-17

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  116 bits (290), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%)
Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQV+ C A+M +AK YHRRHKVC+ HAKA  V + GL QRFCQQCSRFH+L EFD+ KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70
Query: 119 CRRRLAGHNERRRK 132
           CRRRLAGHNERRRK
Sbjct: 71  CRRRLAGHNERRRK 84

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 55  TFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDD 114
           +   CQV +C A++++ K YH+RH+VC   A A  V ++G  +R+CQQC +FH L +FD+
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61
Query: 115 TKRSCRRRLAGHNERRRKSSADYHG 139
            KRSCRR+L  HN RR++   D  G
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVDKGG 86

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)
Query: 57  VSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFD 113
           + CQV+NC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSRFH L EFD
Sbjct: 4   ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	100.0

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=8.2e-48  Score=281.04  Aligned_cols=91  Identities=65%  Similarity=1.088  Sum_probs=80.2

Q ss_pred             CCCCCCCCCccccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccccccchHHHHHhhH
Q 032310           47 SAGAGGPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGH  126 (143)
Q Consensus        47 ~~g~~~p~~~~~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~H  126 (143)
                      ++|++.|    +|||+||.+||+.+|.||+||+||+.|++||+|+|+|+.+||||||++||+|+|||++|||||++|++|
T Consensus         3 ~~~~~~~----~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~h   78 (94)
T 1ul4_A            3 SGSSGLR----LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGH   78 (94)
T ss_dssp             -----CC----CCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCC
T ss_pred             CCCCCCC----ceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHH
Confidence            4556667    999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCcCCC
Q 032310          127 NERRRKSSADYHGEG  141 (143)
Q Consensus       127 n~RRRk~~~~~~~~g  141 (143)
                      |+||||+++|+...|
T Consensus        79 n~RRRk~~~~~~~~~   93 (94)
T 1ul4_A           79 NERRRKSSGESGPSS   93 (94)
T ss_dssp             CCCCCSCCCC-----
T ss_pred             HHHhccCCCCcCCCC
Confidence            999999999987543

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=8.5e-46  Score=267.64  Aligned_cols=82  Identities=48%  Similarity=0.968  Sum_probs=79.7

Q ss_pred             ccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccccccchHHHHHhhHHHhhccCCCCC
Q 032310           58 SCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADY  137 (143)
Q Consensus        58 ~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~RRRk~~~~~  137 (143)
                      +|||+||++||+.+|.||+||+||+.|++||+|+|+|+.+||||||++||+|+|||++|||||++|++||+|||+++.++
T Consensus         5 ~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~~~   84 (88)
T 1ul5_A            5 RCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVDK   84 (88)
T ss_dssp             SCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCSS
T ss_pred             eeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             cC
Q 032310          138 HG  139 (143)
Q Consensus       138 ~~  139 (143)
                      .+
T Consensus        85 ~~   86 (88)
T 1ul5_A           85 GG   86 (88)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=3.8e-35  Score=199.18  Aligned_cols=56  Identities=63%  Similarity=1.196  Sum_probs=55.7

Q ss_pred             ccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccc
Q 032310           58 SCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFD  113 (143)
Q Consensus        58 ~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD  113 (143)
                      +|||+||++||+.+|.||+|||||+.|+|||+|+++|+.+||||||+|||+|+|||
T Consensus         5 ~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            5 CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             ECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             eeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            99999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	4e-38
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	1e-37
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	4e-29

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (307), Expect = 4e-38
 Identities = 57/78 (73%), Positives = 65/78 (83%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQV+ C A+M +AK YHRRHKVC+ HAKA  V + GL QRFCQQCSRFH+L EFD+ KRS
Sbjct: 4   CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 63

Query: 119 CRRRLAGHNERRRKSSAD 136
           CRRRLAGHNERRRKSS +
Sbjct: 64  CRRRLAGHNERRRKSSGE 81

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  121 bits (304), Expect = 1e-37
 Identities = 39/81 (48%), Positives = 56/81 (69%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQV +C A++++ K YH+RH+VC   A A  V ++G  +R+CQQC +FH L +FD+ KRS
Sbjct: 4   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 63

Query: 119 CRRRLAGHNERRRKSSADYHG 139
           CRR+L  HN RR++   D  G
Sbjct: 64  CRRKLERHNNRRKRKPVDKGG 84

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.7 bits (246), Expect = 4e-29
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 57  VSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFD 113
           + CQV+NC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSRFH L EFD
Sbjct: 2   ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	100.0

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.1e-45  Score=262.16  Aligned_cols=80  Identities=71%  Similarity=1.224  Sum_probs=78.2

Q ss_pred             cccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccccccchHHHHHhhHHHhhccCCCC
Q 032310           57 VSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSAD  136 (143)
Q Consensus        57 ~~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~RRRk~~~~  136 (143)
                      .+|||+||++||+.+|.||+||+||+.|++||+|+|+|+.+||||||++||+|+|||++|||||++|++||+||||+++|
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-45  Score=264.17  Aligned_cols=83  Identities=47%  Similarity=0.949  Sum_probs=81.5

Q ss_pred             ccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccccccchHHHHHhhHHHhhccCCCCC
Q 032310           58 SCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADY  137 (143)
Q Consensus        58 ~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~RRRk~~~~~  137 (143)
                      .|||+||++||+.+|.||+||+||+.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||.||||+++|+
T Consensus         3 rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~~   82 (86)
T d1ul5a_           3 RCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVDK   82 (86)
T ss_dssp             SCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCSS
T ss_pred             eeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC
Q 032310          138 HGE  140 (143)
Q Consensus       138 ~~~  140 (143)
                      +|.
T Consensus        83 ~g~   85 (86)
T d1ul5a_          83 GGV   85 (86)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            874

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.4e-36  Score=200.15  Aligned_cols=57  Identities=61%  Similarity=1.193  Sum_probs=56.2

Q ss_pred             cccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccc
Q 032310           57 VSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFD  113 (143)
Q Consensus        57 ~~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD  113 (143)
                      ++|||+||++||+.+|.||+|||||+.|+|||+|+|+|++|||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            589999999999999999999999999999999999999999999999999999998