Citrus Sinensis ID: 032339

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLSTYGL
Secondary Structure (PSIPRED)
cccccHHcccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccccccccccEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEcEccHHHHHHHHHHHHHHHHHHcccEccccccccHHHHHHHcccEcccHHHHHHccccccccEccccccEccccEEEEEccc
Coil and Loop (DISEMBL)
mtlqsslcgsgvstfictprpiiarprpvtqiraqvepseKSVEIMRKFSEQYARrsdtffcvdkSVTSVVIKGLAdhkdslgaplcpcrhyddKAAEAQqgfwncpcvpmrerkechcmlfltpendfagqdQVMLSTYGL
Flexible Loop (DISEMBL)
mtlqsslcgsgvstfictprpiiarprpvtqiraqvepseksveIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTpendfagqdqVMLSTYGL
Low Complexity Region (SEG)
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLSTYGL
Disordered region (IsUnstruct)
*******CGSGVSTFICTPRPIIARPR*V*******************FSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFA************
Disordered Region (DISOPRED)
*******CGSGVST********************************RKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPEND***********YG*
Disordered Region (DISEMBL)
********GSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLSTYGL
Disordered Region (DISPRO)
*TLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLSTYGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLSTYGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9SJ89	146	Ferredoxin-thioredoxin re	yes	no	0.943	0.917	0.735	1e-53
O49856	144	Ferredoxin-thioredoxin re	yes	no	0.929	0.916	0.727	6e-53
P41349	148	Ferredoxin-thioredoxin re	N/A	no	0.774	0.743	0.845	2e-52
P41348	144	Ferredoxin-thioredoxin re	N/A	no	0.795	0.784	0.780	3e-51
P41347	152	Ferredoxin-thioredoxin re	N/A	no	0.788	0.736	0.769	6e-50
Q6K471	146	Ferredoxin-thioredoxin re	yes	no	0.676	0.657	0.885	2e-48
Q1XDA1	116	Ferredoxin-thioredoxin re	N/A	no	0.697	0.853	0.676	1e-37
P51386	118	Ferredoxin-thioredoxin re	N/A	no	0.690	0.830	0.683	3e-37
O78461	102	Ferredoxin-thioredoxin re	yes	no	0.711	0.990	0.623	1e-36
Q9TM25	111	Ferredoxin-thioredoxin re	N/A	no	0.676	0.864	0.614	3e-35

>sp|Q9SJ89|FTRC_ARATH Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 110/140 (78%), Gaps = 6/140 (4%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH 118
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECH
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query: 119 CMLFLTPENDFAGQDQVMLS 138
           CMLFLTP+NDFAG+DQ + S
Sbjct: 117 CMLFLTPDNDFAGKDQTITS 136

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 7EC: .EC: 2

>sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1

 Score =  205 bits (522), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 110/136 (80%), Gaps = 4/136 (2%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1   MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCM 120
           FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECHCM
Sbjct: 57  FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCM 116

Query: 121 LFLTPENDFAGQDQVM 136
           LFLTP+NDFAG +Q +
Sbjct: 117 LFLTPDNDFAGNEQTI 132

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41349|FTRC2_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 102/110 (92%)

Query: 27  RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPL 86
           RP   I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPL
Sbjct: 27  RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPL 86

Query: 87  CPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           CPCR+YDDKAAEA QGFWNCPCVPMRERKECHCMLFLTPENDFAG+DQ +
Sbjct: 87  CPCRYYDDKAAEATQGFWNCPCVPMRERKECHCMLFLTPENDFAGKDQTI 136

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Spinacia oleracea GN=FTRC PE=1 SV=2

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 106/114 (92%), Gaps = 1/114 (0%)

Query: 24  ARPRPVTQ-IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
           A PR  ++ IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+L
Sbjct: 19  ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTL 78

Query: 83  GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           GAPLCPCRHYDDK AEA+QGFWNCPCVPMRERKECHCMLFLTP+NDFAG++Q +
Sbjct: 79  GAPLCPCRHYDDKEAEAKQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKEQTI 132

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Zea mays GN=FTRC PE=2 SV=1

 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 102/117 (87%), Gaps = 5/117 (4%)

Query: 24  ARPRPVTQIRAQVE----PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHK 79
            RPR    +RAQ       ++KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+
Sbjct: 25  GRPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHR 83

Query: 80  DSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           D+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECHCMLFLTP+NDFAG+DQV+
Sbjct: 84  DTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGKDQVI 140

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q6K471|FTRC_ORYSJ Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0249900 PE=2 SV=1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 85/96 (88%), Positives = 91/96 (94%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           KS+EIMRKFSEQYARRS+TFFC +KSVT+VVIKGLADHKD LGAPLCPCRHYDDKAAE  
Sbjct: 39  KSLEIMRKFSEQYARRSNTFFCSEKSVTAVVIKGLADHKDQLGAPLCPCRHYDDKAAEVA 98

Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           QGFWNCPCVPMRERKECHCMLFLTP+NDFAGQDQ +
Sbjct: 99  QGFWNCPCVPMRERKECHCMLFLTPDNDFAGQDQAI 134

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q1XDA1|FTRC_PORYE Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra yezoensis GN=ftrB PE=3 SV=2

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 81/99 (81%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           +++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE  
Sbjct: 11  ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPCRHYEDKKAEIS 70

Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLST 139
             +WNCPCVPMRER+ECHCMLFLTP+N+FA   Q +  T
Sbjct: 71  ATYWNCPCVPMRERRECHCMLFLTPDNEFASDLQEIDKT 109

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Porphyra yezoensis (taxid: 2788)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|P51386|FTRC_PORPU Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra purpurea GN=ftrB PE=3 SV=1

 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 78/98 (79%)

Query: 42  SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
           ++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD  GAPLCPCRHY+DK AE   
Sbjct: 12  NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPCRHYEDKKAEISA 71

Query: 102 GFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVMLST 139
            +WNCPCVPMRERKECHCMLFLTP+N+F    Q +  T
Sbjct: 72  TYWNCPCVPMRERKECHCMLFLTPDNEFTSDLQEIDKT 109

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|O78461|FTRC_GUITH Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia theta GN=ftrB PE=3 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 78/101 (77%)

Query: 36  VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDK 95
           +E    S   M+KF+E YA+R++TFFC D S+T +V++GLA HKD  GAPLCPCRHYDDK
Sbjct: 2   IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPCRHYDDK 61

Query: 96  AAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           + E    +WNCPCVPMRERKECHCMLFLT +N+FAG  Q +
Sbjct: 62  SEEVASTYWNCPCVPMRERKECHCMLFLTKDNEFAGSSQTL 102

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Guillardia theta (taxid: 55529)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

>sp|Q9TM25|FTRC_CYACA Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium caldarium GN=ftrB PE=3 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 79/96 (82%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD  GAPLCPCRHY++K  E  
Sbjct: 6   KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPCRHYENKKTEVL 65

Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
             +WNCPCVPMRERKECHCMLFL P N+F+G+ Q++
Sbjct: 66  AAYWNCPCVPMRERKECHCMLFLQPSNEFSGESQLI 101

FTR is a [4Fe-4S] protein playing a central role in the ferredoxin/thioredoxin regulatory chain. It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin) in the regulation of enzymes by reduction of specific disulfide groups. Catalyzes the light-dependent activation of several photosynthetic enzymes.

Cyanidium caldarium (taxid: 2771)

EC: 1

EC: .

EC: 8

EC: .

EC: 7

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
225452570	145	PREDICTED: ferredoxin-thioredoxin reduct	0.929	0.910	0.788	3e-56
147852954	160	hypothetical protein VITISV_006145 [Viti	0.957	0.85	0.773	4e-56
14275859	148	ferredoxin-thioredoxin-reductase catalyt	0.922	0.885	0.739	1e-53
388494172	144	unknown [Lotus japonicus]	0.802	0.791	0.850	2e-53
116779666	150	unknown [Picea sitchensis] gi|116785080|	0.950	0.9	0.705	5e-53
346467615	155	hypothetical protein [Amblyomma maculatu	0.929	0.851	0.727	3e-52
297831548	146	ferredoxin thioredoxin reductase catalyt	0.943	0.917	0.735	9e-52
15224046	146	Ferredoxin-thioredoxin reductase catalyt	0.943	0.917	0.735	9e-52
449492658	187	PREDICTED: ferredoxin-thioredoxin reduct	0.739	0.561	0.866	4e-51
407971016	144	ferredoxin-thioredoxin reductase catalyt	0.929	0.916	0.727	4e-51

>gi|225452570|ref|XP_002280653.1| PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Vitis vinifera] gi|296087725|emb|CBI34981.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/137 (78%), Positives = 119/137 (86%), Gaps = 5/137 (3%)

Query: 1   MTLQ-SSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDT 59
           M+LQ SS    G+S+F+  PR    R R V +IRA+VEPS+KSVEIMRKFSEQYAR+S T
Sbjct: 1   MSLQASSSYAFGISSFVSPPR----RVRHVPEIRAKVEPSDKSVEIMRKFSEQYARKSGT 56

Query: 60  FFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHC 119
           +FCVDK VTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA QGFWNCPCVPMRERKECHC
Sbjct: 57  YFCVDKGVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAGQGFWNCPCVPMRERKECHC 116

Query: 120 MLFLTPENDFAGQDQVM 136
           MLFLTP+NDFAGQDQ +
Sbjct: 117 MLFLTPDNDFAGQDQTI 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852954|emb|CAN81270.1| hypothetical protein VITISV_006145 [Vitis vinifera]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 120/141 (85%), Gaps = 5/141 (3%)

Query: 1   MTLQ-SSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDT 59
           M+LQ SS    G+S+F+  PR    R R V +IRA+VEPS+KSVEIMRKFSEQYAR+S T
Sbjct: 1   MSLQASSSYAFGISSFVSPPR----RVRHVPEIRAKVEPSDKSVEIMRKFSEQYARKSGT 56

Query: 60  FFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHC 119
           +FCVDK VTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA QGFWNCPCVPMRERKECHC
Sbjct: 57  YFCVDKGVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAGQGFWNCPCVPMRERKECHC 116

Query: 120 MLFLTPENDFAGQDQVMLSTY 140
           MLFLTP+NDFAGQDQ   S +
Sbjct: 117 MLFLTPDNDFAGQDQRRTSKF 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14275859|emb|CAC39620.1| ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum tuberosum]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 117/138 (84%), Gaps = 7/138 (5%)

Query: 2   TLQSSL---CGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           TLQ+S     G G+S+F   P+P   R   V    A++EPSEKSVEIMRKFSEQYARRS+
Sbjct: 3   TLQASTSYSVGFGISSFATRPKPSTHRCLTV----AKMEPSEKSVEIMRKFSEQYARRSE 58

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH 118
           T+FC+DK VTSVVIKGLA+HKD+LGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH
Sbjct: 59  TYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH 118

Query: 119 CMLFLTPENDFAGQDQVM 136
           CMLFLTP+NDFAG++Q +
Sbjct: 119 CMLFLTPDNDFAGEEQTI 136

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494172|gb|AFK35152.1| unknown [Lotus japonicus]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 106/114 (92%)

Query: 23  IARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
           + R R +  +RAQVEPSEKS+EIMRKFSEQYAR+S T+FCVDKSVTSVVIKGLADHKDSL
Sbjct: 19  LRRHRNLHVVRAQVEPSEKSIEIMRKFSEQYARKSGTYFCVDKSVTSVVIKGLADHKDSL 78

Query: 83  GAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           GAPLCPCRHYDDK AEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAG++Q +
Sbjct: 79  GAPLCPCRHYDDKPAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGKEQAI 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779666|gb|ABK21385.1| unknown [Picea sitchensis] gi|116785080|gb|ABK23584.1| unknown [Picea sitchensis]

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 114/136 (83%), Gaps = 1/136 (0%)

Query: 3   LQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFC 62
           + +S+   GVS+   +    I   +   Q+RA+VEPS KSVEIMRKFSEQYARRSDT+FC
Sbjct: 6   INTSISNLGVSSLKSSANARI-ESKYSMQVRAKVEPSNKSVEIMRKFSEQYARRSDTYFC 64

Query: 63  VDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLF 122
           VDK+VTSVVIKGLA+HKD+LGAPLCPCRHYDDK AEA+QGFWNCPCVPMRERKECHCMLF
Sbjct: 65  VDKAVTSVVIKGLAEHKDTLGAPLCPCRHYDDKVAEAEQGFWNCPCVPMRERKECHCMLF 124

Query: 123 LTPENDFAGQDQVMLS 138
           LT +NDF+G++Q + S
Sbjct: 125 LTTDNDFSGKEQTISS 140

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346467615|gb|AEO33652.1| hypothetical protein [Amblyomma maculatum]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 113/136 (83%), Gaps = 4/136 (2%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           M++QSS  G G+     +P P   R R  +++ A+ EPS+KSVE+MRKFSEQYARRS T+
Sbjct: 21  MSIQSSFSGVGLPCL--SPAPTTRRSR--SRVFAKAEPSDKSVELMRKFSEQYARRSGTY 76

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCM 120
           FCVDK VTSVVIKGLADHKDS+GAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECHCM
Sbjct: 77  FCVDKGVTSVVIKGLADHKDSVGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECHCM 136

Query: 121 LFLTPENDFAGQDQVM 136
           LFLTP+NDFAG DQ +
Sbjct: 137 LFLTPDNDFAGADQAI 152

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|297831548|ref|XP_002883656.1| ferredoxin thioredoxin reductase catalytic beta chain family protein [Arabidopsis lyrata subsp. lyrata] gi|297329496|gb|EFH59915.1| ferredoxin thioredoxin reductase catalytic beta chain family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 110/140 (78%), Gaps = 6/140 (4%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFVSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH 118
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECH
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query: 119 CMLFLTPENDFAGQDQVMLS 138
           CMLFLTP+NDFAG+DQ + S
Sbjct: 117 CMLFLTPDNDFAGKDQTITS 136

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224046|ref|NP_178547.1| Ferredoxin-thioredoxin reductase catalytic chain [Arabidopsis thaliana] gi|75206241|sp|Q9SJ89.1|FTRC_ARATH RecName: Full=Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; Short=FTR-C; Flags: Precursor gi|4544427|gb|AAD22336.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|17380642|gb|AAL36151.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|21436083|gb|AAM51242.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|21593637|gb|AAM65604.1| putative ferredoxin-thioredoxin reductase [Arabidopsis thaliana] gi|330250764|gb|AEC05858.1| Ferredoxin-thioredoxin reductase catalytic chain [Arabidopsis thaliana]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 110/140 (78%), Gaps = 6/140 (4%)

Query: 1   MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
           M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct: 1   MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query: 59  TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH 118
           T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECH
Sbjct: 57  TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query: 119 CMLFLTPENDFAGQDQVMLS 138
           CMLFLTP+NDFAG+DQ + S
Sbjct: 117 CMLFLTPDNDFAGKDQTITS 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492658|ref|XP_004159064.1| PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic-like [Cucumis sativus]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 91/105 (86%), Positives = 97/105 (92%)

Query: 32  IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRH 91
           +RAQ EPSEKSVEIMRKFSEQYAR+S T+FCVDK VT+VVIKGLADHKD+LGAPLCPCRH
Sbjct: 71  VRAQAEPSEKSVEIMRKFSEQYARKSGTYFCVDKGVTAVVIKGLADHKDTLGAPLCPCRH 130

Query: 92  YDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           YDDK AE  QGFWNCPCVPMRERKECHCMLFLTPENDFAG DQ +
Sbjct: 131 YDDKPAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGNDQAI 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407971016|ref|NP_001236326.1| ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Glycine max] gi|3913670|sp|O49856.1|FTRC_SOYBN RecName: Full=Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; Short=FTR-C; Flags: Precursor gi|2765445|emb|CAA75356.1| ferredoxin thioredoxin reductase precursor [Glycine max]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 110/136 (80%), Gaps = 4/136 (2%)

Query: 1   MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
           MT Q+S     V + + TP     R R    +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1   MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56

Query: 61  FCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCM 120
           FCVDK VTSVVIKGLADHKD+LGAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECHCM
Sbjct: 57  FCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCM 116

Query: 121 LFLTPENDFAGQDQVM 136
           LFLTP+NDFAG +Q +
Sbjct: 117 LFLTPDNDFAGNEQTI 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2049228	146	AT2G04700 [Arabidopsis thalian	0.943	0.917	0.735	8.3e-51
UNIPROTKB|Q55389	118	ftrC "Ferredoxin-thioredoxin r	0.676	0.813	0.697	3e-37

TAIR|locus:2049228 AT2G04700 [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 103/140 (73%), Positives = 110/140 (78%)

Query:     1 MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
             M LQ+  C  G   S    TPR    R      IRA+ EPSEKSVEIMRKFSEQYARRS 
Sbjct:     1 MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56

Query:    59 TFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECH 118
             T+FCVDK VTSVVIKGLA+HKDS GAPLCPCRHYDDKAAE  QGFWNCPCVPMRERKECH
Sbjct:    57 TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPCRHYDDKAAEVGQGFWNCPCVPMRERKECH 116

Query:   119 CMLFLTPENDFAGQDQVMLS 138
             CMLFLTP+NDFAG+DQ + S
Sbjct:   117 CMLFLTPDNDFAGKDQTITS 136

GO:0008937 "ferredoxin-NAD(P) reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030385 "ferredoxin:thioredoxin reductase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q55389 ftrC "Ferredoxin-thioredoxin reductase, catalytic chain" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 67/96 (69%), Positives = 82/96 (85%)

Query:    39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
             + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct:     8 NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 67

Query:    99 AQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
              +  FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct:    68 VKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       142   0.00091  102 3  11 22  0.40    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  145 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.52u 0.17s 13.69t   Elapsed:  00:00:00
  Total cpu time:  13.52u 0.17s 13.69t   Elapsed:  00:00:00
  Start:  Sat May 11 02:05:26 2013   End:  Sat May 11 02:05:26 2013

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJ89	FTRC_ARATH	1, ., 8, ., 7, ., 2	0.7357	0.9436	0.9178	yes	no
Q6K471	FTRC_ORYSJ	1, ., 8, ., 7, ., 2	0.8854	0.6760	0.6575	yes	no
O78461	FTRC_GUITH	1, ., 8, ., 7, ., 2	0.6237	0.7112	0.9901	yes	no
O49856	FTRC_SOYBN	1, ., 8, ., 7, ., 2	0.7279	0.9295	0.9166	yes	no
P41348	FTRC1_SPIOL	1, ., 8, ., 7, ., 2	0.7807	0.7957	0.7847	N/A	no
P41349	FTRC2_SPIOL	1, ., 8, ., 7, ., 2	0.8454	0.7746	0.7432	N/A	no
P41347	FTRC_MAIZE	1, ., 8, ., 7, ., 2	0.7692	0.7887	0.7368	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.8.7.2	0.991
3rd Layer	1.8.7	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020811001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (145 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00005318001	SubName- Full=Chromosome undetermined scaffold_1017, whole genome shotgun sequence; (554 aa)	•						•		0.814
	GSVIVG00002047001	SubName- Full=Chromosome undetermined scaffold_125, whole genome shotgun sequence; (321 aa)	•						•		0.772
	GSVIVG00002625001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (149 aa)			•	•			•		0.765
	GSVIVG00017304001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (463 aa)	•						•		0.761
	GSVIVG00024152001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (462 aa)				•			•		0.540
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)			•	•					0.515
	GSVIVG00014701001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (331 aa)			•	•					0.472
	GSVIVG00006255001	SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (442 aa)			•						0.466
	GSVIVG00013467001	SubName- Full=Chromosome undetermined scaffold_484, whole genome shotgun sequence; (332 aa)			•	•					0.456
	GSVIVG00026973001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (166 aa)			•	•					0.452

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
CHL00165	116	CHL00165, ftrB, ferredoxin thioreductase subunit b	8e-59
pfam02943	105	pfam02943, FeThRed_B, Ferredoxin thioredoxin reduc	1e-57
COG4802	110	COG4802, FtrB, Ferredoxin-thioredoxin reductase, c	2e-35

>gnl|CDD|214382 CHL00165, ftrB, ferredoxin thioreductase subunit beta; Validated

 Score =  177 bits (451), Expect = 8e-59
 Identities = 66/94 (70%), Positives = 79/94 (84%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           +S+E MRKF+E YA+R++TFFC D S+T+VVI+GLA HKD  GAPLCPCRHY+DK  E  
Sbjct: 11  ESLEAMRKFAETYAKRTNTFFCSDLSITAVVIEGLARHKDEYGAPLCPCRHYEDKKVEVS 70

Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
             +WNCPCVPMRERKECHCMLFLTP+N+FA Q Q
Sbjct: 71  AAYWNCPCVPMRERKECHCMLFLTPDNEFASQSQ 104

Length = 116

>gnl|CDD|145870 pfam02943, FeThRed_B, Ferredoxin thioredoxin reductase catalytic beta chain

 Score =  174 bits (442), Expect = 1e-57
 Identities = 66/96 (68%), Positives = 76/96 (79%)

Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           KS+E MRKF+E+YA+RS T+FC D  VT+VVI+GLA HKD  G PLCPCRHY+DK AE  
Sbjct: 1   KSLEKMRKFAEKYAKRSGTYFCPDPEVTAVVIEGLARHKDRYGKPLCPCRHYEDKEAEVS 60

Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
              W CPCVPMRERKECHC LFLTPEN FAG+ Q +
Sbjct: 61  ADDWICPCVPMRERKECHCGLFLTPENLFAGERQEI 96

Length = 105

>gnl|CDD|227139 COG4802, FtrB, Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]

 Score =  117 bits (296), Expect = 2e-35
 Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 6/94 (6%)

Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           S++ +  M +F+EQYA +S      D+  T+ V++GLA +K+  G P CPCR    K  E
Sbjct: 2   SDEELNKMYRFTEQYAEKSGYRLNPDREFTAEVLRGLASNKERYGYPSCPCRLVTGKEEE 61

Query: 99  AQQGFWNCPCVP----MRERKECHCMLFLTPEND 128
            +     CPCV     +RE  EC+C L+L+PE D
Sbjct: 62  DKD--IVCPCVYRDDDIREYGECYCGLYLSPEKD 93

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
CHL00165	116	ftrB ferredoxin thioreductase subunit beta; Valida	100.0
PF02943	108	FeThRed_B: Ferredoxin thioredoxin reductase cataly	100.0
COG4802	110	FtrB Ferredoxin-thioredoxin reductase, catalytic s	100.0
PF05511	99	ATP-synt_F6: Mitochondrial ATP synthase coupling f	92.44

>CHL00165 ftrB ferredoxin thioreductase subunit beta; Validated

Probab=100.00  E-value=1.2e-49  Score=300.09  Aligned_cols=106  Identities=62%  Similarity=1.211  Sum_probs=101.8

Q ss_pred             cCCCChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCcccCCchhhhcCCceeecCcccccC
Q 032339           35 QVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER  114 (142)
Q Consensus        35 ~~~~s~~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~~CPCRl~~dk~~E~~d~diICPC~y~~e~  114 (142)
                      +...+++++++|++|+++||+++||+||||+++|+.|++||++||++||+||||||+++|+++|+++++|||||++|+++
T Consensus         5 ~~~~~~~~~e~m~~f~ekya~~~G~~fnpD~~vt~~Vi~GLa~nK~~yG~p~CPCR~~~~k~~e~~~~~~iCPCv~m~e~   84 (116)
T CHL00165          5 NEKSKPESLEAMRKFAETYAKRTNTFFCSDLSITAVVIEGLARHKDEYGAPLCPCRHYEDKKVEVSAAYWNCPCVPMRER   84 (116)
T ss_pred             ccccchhhHHHHHHHHHHHHHHhCCeeCCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCcHHHhhcCCeecCCHhHHHc
Confidence            45688999999999999999999999999999999999999999999999999999999999998888899999999999


Q ss_pred             ceeeeeeeeCCccccCCCceeecccC
Q 032339          115 KECHCMLFLTPENDFAGQDQVMLSTY  140 (142)
Q Consensus       115 G~ChCgLFvs~e~~~~G~~~~~~~~~  140 (142)
                      |+|||||||++|++|+|++|+|+++.
T Consensus        85 g~CHC~LF~t~e~~~~~~~~~i~~~~  110 (116)
T CHL00165         85 KECHCMLFLTPDNEFASQSQTISKKT  110 (116)
T ss_pred             CCceEeeeecCCccccCcceeecHHH
Confidence            99999999999999999999999863

>PF02943 FeThRed_B: Ferredoxin thioredoxin reductase catalytic beta chain; InterPro: IPR004209 Ferredoxin thioredoxin reductase is a [4FE-4S] protein present in organisms performing oxygenic photosynthesis, and plays an important role in the ferredoxin/thioredoxin regulatory chain

Probab=100.00  E-value=3.3e-45  Score=272.43  Aligned_cols=99  Identities=42%  Similarity=0.725  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCcccCCchhhhcCCceeecCcccc----cCce
Q 032339           41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMR----ERKE  116 (142)
Q Consensus        41 ~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~~CPCRl~~dk~~E~~d~diICPC~y~~----e~G~  116 (142)
                      |++++|++|+++||+++||+||||+++|+.|++||++||++||++|||||+++|+++|++|++|||||++++    ++|+
T Consensus         1 ~~le~~~~~~~~~a~~~G~~~NpD~~~~~~v~~GL~~nk~~yG~~~CPCr~~~~~~ee~~d~~iiCPC~~~r~~~~~~G~   80 (108)
T PF02943_consen    1 KELEKMYKFLEKYAEKSGYKLNPDEEVTDDVLEGLARNKERYGYPYCPCRLASGKEEEVKDRDIICPCVPYREDDIEYGH   80 (108)
T ss_dssp             HHHHHHHHHHHHHHHHTT-B-BSSHHHHHHHHHHHHHHHHHHSS-B-SSC--S-HHHHHHH-TTBSS-HHHHHH------
T ss_pred             ChHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCchhhhccCCeecCCHHHHhhcccccc
Confidence            689999999999999999999999999999999999999999999999999999888888999999999643    7999


Q ss_pred             eeeeeeeCCccccCCCceeeccc
Q 032339          117 CHCMLFLTPENDFAGQDQVMLST  139 (142)
Q Consensus       117 ChCgLFvs~e~~~~G~~~~~~~~  139 (142)
                      |||||||++|++++|++|+|+.+
T Consensus        81 ChC~Lf~~~e~~~~~~~~~~~~e  103 (108)
T PF02943_consen   81 CHCGLFVSPEYAEAGKKQEISHE  103 (108)
T ss_dssp             -TTSSSB-TTSTTB-S-S---HH
T ss_pred             ceEeeeECcccccchhhcccCHH
Confidence            99999999999999999999764

It converts an electron signal (photoreduced ferredoxin) to a thiol signal (reduced thioredoxin), regulating enzymes by reduction of specific disulphide groups. It catalyses the light-dependent activation of several photosynthetis enzymes. Ferredoxin thioredoxin reductase is a heterodimer of subunit alpha and subunit beta. Subunit alpha is the variable subunit, and beta is the catalytic chain []. The structure of the beta subunit has been determined and found to fold around the FeS cluster [].; GO: 0008937 ferredoxin-NAD(P) reductase activity, 0055114 oxidation-reduction process; PDB: 2PUK_E 2PVD_A 2PVG_A 2PUO_A 2PU9_A 1DJ7_A 2PVO_A.

>COG4802 FtrB Ferredoxin-thioredoxin reductase, catalytic subunit [Energy production and conversion]

Probab=100.00  E-value=8.9e-42  Score=254.09  Aligned_cols=96  Identities=40%  Similarity=0.725  Sum_probs=89.7

Q ss_pred             CChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCcccCCchhhhcCCceeecCcc----ccc
Q 032339           38 PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVP----MRE  113 (142)
Q Consensus        38 ~s~~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~~CPCRl~~dk~~E~~d~diICPC~y----~~e  113 (142)
                      .+++++++||+|+++||+|+||+||||.++|+.|++||+.||++||+++||||+++|+++|  |++|||||+|    +++
T Consensus         1 ~~~e~l~~my~~~eq~AeksG~~lnpD~e~~~~v~~gL~~~ke~yG~~~CPCRl~~g~eee--dk~ivCPCvy~~ddi~e   78 (110)
T COG4802           1 ESDEELNKMYRFTEQYAEKSGYRLNPDREFTAEVLRGLASNKERYGYPSCPCRLVTGKEEE--DKDIVCPCVYRDDDIRE   78 (110)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCceeCCCHHHHHHHHHHHHHhHHHhCCCCCCeecccCCHHH--hhceeccCcCCccchhh
Confidence            3689999999999999999999999999999999999999999999999999999998888  6689999999    899


Q ss_pred             CceeeeeeeeCCccccCCCceeecc
Q 032339          114 RKECHCMLFLTPENDFAGQDQVMLS  138 (142)
Q Consensus       114 ~G~ChCgLFvs~e~~~~G~~~~~~~  138 (142)
                      ||.||||||++++..   +-|.|+.
T Consensus        79 ~g~C~C~Lyl~~e~~---e~~sIp~  100 (110)
T COG4802          79 YGECYCGLYLSPEKD---EAQSIPE  100 (110)
T ss_pred             hCceeEEEEeccccc---chhhcch
Confidence            999999999999996   5666664

>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.44  E-value=0.25  Score=36.93  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=39.6

Q ss_pred             CcccccccccccccccCCCccccccCCcceeeccc--CCC-ChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHH
Q 032339            1 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQ--VEP-SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLAD   77 (142)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-s~~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~   77 (142)
                      |.+|+.+.++..++.+-..|    |.-..+++.++  .+| ..-=+++++++..+-..+.|=..++.+++-..+-+-|.+
T Consensus         1 m~~~~~~~~~~~~~~s~~~~----Rni~~sa~~~~k~~DPIQklFldKIREY~~Ksks~gGklVD~~Pe~~kel~eel~k   76 (99)
T PF05511_consen    1 MALQRRLSSLLRSAVSVHLR----RNIGTSAVAFNKALDPIQKLFLDKIREYNQKSKSSGGKLVDAGPEYEKELNEELEK   76 (99)
T ss_dssp             ------------------------------------S--TTTHHHHHHHHHHHHHHTTTSS-STT--THHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHH----HHhhhhHHHHhcccChHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Confidence            78888777777766665555    44444455544  334 555689999998888888898999999999999999999


Q ss_pred             hHhhhCCC
Q 032339           78 HKDSLGAP   85 (142)
Q Consensus        78 NK~rYG~~   85 (142)
                      -...||..
T Consensus        77 L~r~YG~g   84 (99)
T PF05511_consen   77 LARQYGGG   84 (99)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHhCCc
Confidence            99999864

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
1dj7_A	117	Crystal Structure Of Ferredoxin Thioredoxin Reducta		5e-40
2puk_A	109	Crystal Srtucture Of The Binary Complex Between Fer		8e-40
2pu9_A	110	Crystal Srtucture Of The Binary Complex Between Fer		9e-40
2pvg_A	108	Crystal Srtucture Of The Binary Complex Between Fer		3e-39
2pvd_A	107	Crystal Srtucture Of The Reduced Ferredoxin:thiored		1e-38

>pdb|1DJ7|A Chain A, Crystal Structure Of Ferredoxin Thioredoxin Reductase Length = 117

Iteration: 1
 Score =  159 bits (402), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 82/96 (85%)
Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 7   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 66
Query: 99  AQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
            +  FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 67  VKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 102

>pdb|2PUK|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 109

Iteration: 1
 Score =  158 bits (400), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 82/96 (85%)
Query: 39  SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAE 98
           + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE
Sbjct: 1   NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAE 60
Query: 99  AQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
            +  FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 61  VKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 96

>pdb|2PU9|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 110

Iteration: 1
 Score =  158 bits (400), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 81/94 (86%)
Query: 41  KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQ 100
           K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE +
Sbjct: 2   KTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVK 61
Query: 101 QGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
             FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 62  NTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 95

>pdb|2PVG|A Chain A, Crystal Srtucture Of The Binary Complex Between Ferredoxin And Ferredoxin:thioredoxin Reductase Length = 108

Iteration: 1
 Score =  156 bits (395), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 80/93 (86%)
Query: 42  SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQ 101
           ++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE + 
Sbjct: 3   TLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKN 62
Query: 102 GFWNCPCVPMRERKECHCMLFLTPENDFAGQDQ 134
            FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 63  TFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQ 95

>pdb|2PVD|A Chain A, Crystal Srtucture Of The Reduced Ferredoxin:thioredoxin Reductase Length = 107

Iteration: 1
 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 77/89 (86%)
Query: 46  MRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWN 105
           M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY DK AE +  FWN
Sbjct: 4   MKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYADKEAEVKNTFWN 63
Query: 106 CPCVPMRERKECHCMLFLTPENDFAGQDQ 134
           CPCVPMRERKECHCMLFLTP+NDFAG  Q
Sbjct: 64  CPCVPMRERKECHCMLFLTPDNDFAGDAQ 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1dj7_A	117	Ferredoxin thioredoxin reductase: catalytic chain;	8e-48

>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A Length = 117

 Score =  149 bits (377), Expect = 8e-48
 Identities = 67/103 (65%), Positives = 84/103 (81%)

Query: 34  AQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYD 93
           +    + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+
Sbjct: 2   SSDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYE 61

Query: 94  DKAAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           DK AE +  FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q +
Sbjct: 62  DKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDI 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
1dj7_A	117	Ferredoxin thioredoxin reductase: catalytic chain;	100.0

>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A

Probab=100.00  E-value=6.2e-49  Score=295.33  Aligned_cols=105  Identities=64%  Similarity=1.236  Sum_probs=96.8

Q ss_pred             cCCCChHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCcccCCchhhhcCCceeecCcccccC
Q 032339           35 QVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRER  114 (142)
Q Consensus        35 ~~~~s~~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~~CPCRl~~dk~~E~~d~diICPC~y~~e~  114 (142)
                      .++++++++++|++|+++||+++||+||||++||+.|++||++||++||++|||||++.|+++|++.++|||||+||+++
T Consensus         3 ~~~~~~~~~e~~~~f~ek~ae~~G~~~NpD~evt~~vi~GLa~nk~~yG~~~CPCR~~gdke~d~~~~~iiCPC~~~re~   82 (117)
T 1dj7_A            3 SDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRER   82 (117)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCSSSCCSCHHHHHHHCTTBSSCHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCcCCCChhhhcccCCeecCCcChhhc
Confidence            56789999999999999999999999999999999999999999999999999999997677766667799999999999


Q ss_pred             ceeeeeeeeCCccccCCCceeeccc
Q 032339          115 KECHCMLFLTPENDFAGQDQVMLST  139 (142)
Q Consensus       115 G~ChCgLFvs~e~~~~G~~~~~~~~  139 (142)
                      |+|||||||++||+|+|+.|+|+++
T Consensus        83 G~ChC~Lfvt~e~~~~g~~~~i~~~  107 (117)
T 1dj7_A           83 KECHCMLFLTPDNDFAGDAQDIPME  107 (117)
T ss_dssp             CCCTTSSSBCTTSTTBCSCSCCCHH
T ss_pred             CceeEeeeecccccccCccccccHH
Confidence            9999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d2pu9a1	108	g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductas	2e-50

>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]} Length = 108

class: Small proteins
fold: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
superfamily: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
family: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
domain: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
species: Synechocystis sp. [TaxId: 1143]

 Score =  154 bits (391), Expect = 2e-50
 Identities = 67/97 (69%), Positives = 82/97 (84%)

Query: 40  EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEA 99
            K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPCRHY+DK AE 
Sbjct: 1   NKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEV 60

Query: 100 QQGFWNCPCVPMRERKECHCMLFLTPENDFAGQDQVM 136
           +  FWNCPCVPMRERKECHCMLFLTP+NDFAG  Q +
Sbjct: 61  KNTFWNCPCVPMRERKECHCMLFLTPDNDFAGDAQDI 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d2pu9a1	108	Ferredoxin thioredoxin reductase (FTR), catalytic	100.0

>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}

class: Small proteins
fold: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
superfamily: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
family: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
domain: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=5.1e-49  Score=290.73  Aligned_cols=100  Identities=67%  Similarity=1.304  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHhhhcCcEeccChhhHHHHHHHHHHhHhhhCCCCCCCcccCCchhhhcCCceeecCcccccCceeee
Q 032339           40 EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHC  119 (142)
Q Consensus        40 ~~~~e~~~~~~ekyaek~Gy~lNPD~ev~~~Vi~GLa~NK~rYG~~~CPCRl~~dk~~E~~d~diICPC~y~~e~G~ChC  119 (142)
                      +|++++|++|+++||+++||+||||+++|+.|++||++||++||++|||||+++|+++|++++.|||||+||+++|+|||
T Consensus         1 dk~le~~~~f~e~ya~~~G~~~npD~~v~~~vi~GLa~nk~~yG~~~CPCr~~~gk~ee~k~~~~iCPC~~~~e~g~ChC   80 (108)
T d2pu9a1           1 NKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHYEDKEAEVKNTFWNCPCVPMRERKECHC   80 (108)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCTTBCCSCHHHHHHHCTTBSSCHHHHHHCCCTT
T ss_pred             ChhHHHHHHHHHHHHHHcCceeCCCHHHHHHHHHHHHHHHHHcCCCCCCcccCCCcHHHhhcCceecCCcChhhcCeeeE
Confidence            58999999999999999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             eeeeCCccccCCCceeeccc
Q 032339          120 MLFLTPENDFAGQDQVMLST  139 (142)
Q Consensus       120 gLFvs~e~~~~G~~~~~~~~  139 (142)
                      ||||++|++++|+.|+|+.+
T Consensus        81 ~Lf~t~e~~~~~~~q~i~~~  100 (108)
T d2pu9a1          81 MLFLTPDNDFAGDAQDIPME  100 (108)
T ss_dssp             SSSBCTTCTTBCSCSCCCHH
T ss_pred             EEEecccccccccccccCHH
Confidence            99999999999999999764