Citrus Sinensis ID: 032340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHcHHHHcccccccEEEEEEccccccccccHHHHHHHcccEEEEEEEcccccccccccccccEEEEEEEccccEEEEEEEEEEEcccccccccccccccccEEEEEccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEEccHHHHHHHcccEEEEEEEcccccccccccccEEEEEEEEcccccEEEEEEEcHcccccccccccccHHHHHHHccccHHHHEEEEEEEcc
Coil and Loop (DISEMBL)
msnksgspsmEDIEAFCTTYRARLDEAeiaksipentslevsspgvervvriplelerfKDRAMYVKYVGEtvttgspsesdgvFRLISFDmetecctwgladvrinrekagkgrplskkqrEWRLNTTFDSLRLVRLHSDC
Flexible Loop (DISEMBL)
msnksgspsmeDIEAFCTTYRARLDEAEiaksipentslevsspgvervvriplelerfkdraMYVKYVGetvttgspsesdGVFRLISFDMETECCTWgladvrinrekagkgrplskkqrewrlnttfdslrlvrlhsdc
Low Complexity Region (SEG)
MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Disordered region (IsUnstruct)
*************EAFCTTYRARLDE*******************VERVVRIPLELERFKDRAMYVKYVGETVTTG****SDGVFRLISFDMETECCTWGLADVRIN****************WRLNTTFDSLRLV******
Disordered Region (DISOPRED)
***KSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRIN*****************RLNTTFDSLRLVRLHSDC
Disordered Region (DISEMBL)
**********EDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREK*********KQREWRLNTTFDSLRLVRLHSDC
Disordered Region (DISPRO)
***KSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q2IPZ0	171	Ribosome maturation facto	yes	no	0.521	0.432	0.341	0.0002
B4UHF7	171	Ribosome maturation facto	yes	no	0.521	0.432	0.329	0.0002
B8JFY3	171	Ribosome maturation facto	yes	no	0.521	0.432	0.329	0.0003

>sp|Q2IPZ0|RIMP_ANADE Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rimP PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 3   NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
           +K+G   ++D +A   T    LD   +A  I     LEVSSPG++R +R P + +R+  +
Sbjct: 47  DKAGGVGIDDCQAVSKTVEPILD---VADFIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQ 103

Query: 63  AMYVKYVGETVTT--GSPS 79
            ++VK  G    T  GSP+
Sbjct: 104 RVHVKAYGPVAGTAPGSPA 122

Required for maturation of 30S ribosomal subunits.
Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

>sp|B4UHF7|RIMP_ANASK Ribosome maturation factor RimP OS=Anaeromyxobacter sp. (strain K) GN=rimP PE=3 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 3   NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
           +K+G   ++D +A   T    LD A++   I     LEVSSPG++R +R P + +R+  +
Sbjct: 47  DKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPRDFDRYAGQ 103

Query: 63  AMYVKYVGETVTT--GSPS 79
            ++VK  G    T  G+P+
Sbjct: 104 RVHVKAYGPVAGTAPGAPA 122

Required for maturation of 30S ribosomal subunits.

Anaeromyxobacter sp. (strain K) (taxid: 447217)

>sp|B8JFY3|RIMP_ANAD2 Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rimP PE=3 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 3   NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
           +K+G   ++D +A   T    LD A++   I     LEVSSPG++R +R P + +R+  +
Sbjct: 47  DKAGGVGIDDCQAVSKTVEPILDVADV---IEPAYDLEVSSPGLDRPLRKPGDFDRYAGQ 103

Query: 63  AMYVKYVGETVTT--GSPS 79
            ++VK  G    T  G+P+
Sbjct: 104 RVHVKAYGPVAGTAPGAPA 122

Required for maturation of 30S ribosomal subunits.

Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) (taxid: 455488)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
449518382	383	PREDICTED: uncharacterized protein LOC10	1.0	0.370	0.809	3e-63
449462174	312	PREDICTED: uncharacterized protein LOC10	1.0	0.455	0.809	3e-63
255570398	306	conserved hypothetical protein [Ricinus	0.992	0.460	0.794	2e-60
225457765	315	PREDICTED: uncharacterized protein LOC10	1.0	0.450	0.788	6e-60
147801247	231	hypothetical protein VITISV_013332 [Viti	0.992	0.610	0.794	2e-59
224062938	313	predicted protein [Populus trichocarpa]	0.992	0.450	0.780	4e-58
356518601	304	PREDICTED: uncharacterized protein LOC10	0.992	0.463	0.737	1e-55
356509322	307	PREDICTED: uncharacterized protein LOC10	0.992	0.459	0.730	1e-55
388510470	327	unknown [Lotus japonicus]	0.985	0.428	0.730	7e-55
30699240	323	uncharacterized protein [Arabidopsis tha	0.971	0.427	0.711	2e-54

>gi|449518382|ref|XP_004166221.1| PREDICTED: uncharacterized protein LOC101228874 [Cucumis sativus]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 129/142 (90%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           +S KSGSP+MEDIEAF TTYRARLD+AE+AKS+PEN SLEVSSPGVERVVRIP EL+RFK
Sbjct: 242 LSTKSGSPNMEDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFK 301

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           +RAMYVKY  E VT  S SESDGVF+L+SFD+E +CCTWG+ADV+INREKAGKGRPLSKK
Sbjct: 302 ERAMYVKYTNEVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKK 361

Query: 121 QREWRLNTTFDSLRLVRLHSDC 142
           QREWRL T FDSLRLVRL+SDC
Sbjct: 362 QREWRLETPFDSLRLVRLYSDC 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462174|ref|XP_004148816.1| PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 129/142 (90%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           +S KSGSP+MEDIEAF TTYRARLD+AE+AKS+PEN SLEVSSPGVERVVRIP EL+RFK
Sbjct: 171 LSTKSGSPNMEDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFK 230

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           +RAMYVKY  E VT  S SESDGVF+L+SFD+E +CCTWG+ADV+INREKAGKGRPLSKK
Sbjct: 231 ERAMYVKYTNEVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKK 290

Query: 121 QREWRLNTTFDSLRLVRLHSDC 142
           QREWRL T FDSLRLVRL+SDC
Sbjct: 291 QREWRLETPFDSLRLVRLYSDC 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570398|ref|XP_002526158.1| conserved hypothetical protein [Ricinus communis] gi|223534535|gb|EEF36234.1| conserved hypothetical protein [Ricinus communis]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/141 (79%), Positives = 127/141 (90%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           ++N+SGSP+MEDIEAF TTYR  LDEAE+AK+IP N +LEVSSPGVER+VRIP EL+RFK
Sbjct: 165 LTNRSGSPTMEDIEAFSTTYRTWLDEAELAKTIPTNIALEVSSPGVERIVRIPEELDRFK 224

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           DR+MYVKY  ET    SPSE+DGVFRLISFD+ETECCTWGLADVRINREK+GKGRPLSKK
Sbjct: 225 DRSMYVKYASETSGMESPSENDGVFRLISFDIETECCTWGLADVRINREKSGKGRPLSKK 284

Query: 121 QREWRLNTTFDSLRLVRLHSD 141
           QREWRLNT FDSL LVRL+S+
Sbjct: 285 QREWRLNTRFDSLLLVRLYSE 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457765|ref|XP_002264003.1| PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera] gi|302142766|emb|CBI19969.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 124/142 (87%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           +SNKSGSPSM DIEAF + YRA+LDEAEIA S+PEN SLEVSSPGVERVV+IP EL+RFK
Sbjct: 174 LSNKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFK 233

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           +R MYVKYV E V  GS  ESDG+FRL+SFD+ET CCTWGLADVRINR KAGKGRPLSKK
Sbjct: 234 ERPMYVKYVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKK 293

Query: 121 QREWRLNTTFDSLRLVRLHSDC 142
           QREWRLNT FDSL LVRL+S+ 
Sbjct: 294 QREWRLNTPFDSLCLVRLYSEI 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801247|emb|CAN61512.1| hypothetical protein VITISV_013332 [Vitis vinifera]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/141 (79%), Positives = 124/141 (87%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           +SNKSGSPSM DIEAF + YRA+LDEAEIA S+PEN SLEVSSPGVERVV+IP EL+RFK
Sbjct: 90  LSNKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFK 149

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           +R MYVKYV E V  GS  ESDG+FRL+SFD+ET CCTWGLADVRINR KAGKGRPLSKK
Sbjct: 150 ERPMYVKYVTEGVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKK 209

Query: 121 QREWRLNTTFDSLRLVRLHSD 141
           QREWRLNT FDSL LVRL+S+
Sbjct: 210 QREWRLNTPFDSLCLVRLYSE 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062938|ref|XP_002300938.1| predicted protein [Populus trichocarpa] gi|222842664|gb|EEE80211.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/141 (78%), Positives = 125/141 (88%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           ++NKSGSP+MEDIEAF TTYRARLDEAE+AK+I EN +LEVSSPGVERVVRIP +L+RFK
Sbjct: 172 LTNKSGSPNMEDIEAFSTTYRARLDEAELAKTITENITLEVSSPGVERVVRIPEDLDRFK 231

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           DRAMYVKYV E     S SESDGV RL+SFDMET+ CTWGLADVR+NREKAGKGRPLSKK
Sbjct: 232 DRAMYVKYVNEADAKDSSSESDGVLRLVSFDMETKYCTWGLADVRVNREKAGKGRPLSKK 291

Query: 121 QREWRLNTTFDSLRLVRLHSD 141
           QREWRL+T F SLRLVR++ +
Sbjct: 292 QREWRLDTPFHSLRLVRVYPE 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518601|ref|XP_003527967.1| PREDICTED: uncharacterized protein LOC100803868 [Glycine max]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 119/141 (84%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           +S KSGSPSMEDIEAF TTYRA+LDEAEIAK +P+N  LEVSSPGVER+VRIP +L+RFK
Sbjct: 163 LSKKSGSPSMEDIEAFSTTYRAKLDEAEIAKVVPDNICLEVSSPGVERIVRIPDDLDRFK 222

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           DR MYVKY          +E DGVF+L SFDMET+CCTWGLADV++NR+KAGKGRPL+KK
Sbjct: 223 DRPMYVKYAINDDQNNPAAEGDGVFKLESFDMETKCCTWGLADVKVNRQKAGKGRPLNKK 282

Query: 121 QREWRLNTTFDSLRLVRLHSD 141
           Q EWRL+T FDSLR VRLHSD
Sbjct: 283 QSEWRLSTPFDSLRFVRLHSD 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509322|ref|XP_003523399.1| PREDICTED: uncharacterized protein LOC100783320 [Glycine max]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/141 (73%), Positives = 120/141 (85%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           +S KSGSPS+EDIEAF  TYRA+LDEAE+AKS+P+N  LEVSSPGVER+VRIP +L+RFK
Sbjct: 166 LSKKSGSPSLEDIEAFSATYRAKLDEAELAKSVPDNICLEVSSPGVERIVRIPDDLDRFK 225

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           +R MYVKY          +E DGVFRL SFDMET+CCTWGLADV++NR+KAGKGRPL+KK
Sbjct: 226 ERPMYVKYAINDDLNNPAAEGDGVFRLESFDMETKCCTWGLADVKVNRQKAGKGRPLNKK 285

Query: 121 QREWRLNTTFDSLRLVRLHSD 141
           QREWRL+T FDSLR VRLHSD
Sbjct: 286 QREWRLSTPFDSLRFVRLHSD 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510470|gb|AFK43301.1| unknown [Lotus japonicus]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 103/141 (73%), Positives = 124/141 (87%), Gaps = 1/141 (0%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           +SNKSGSP++EDIEAF TTYRA+LDEAE+ KS+PEN +LEVSSPGVERVVRIP +L+RFK
Sbjct: 185 LSNKSGSPNIEDIEAFSTTYRAKLDEAELTKSVPENLTLEVSSPGVERVVRIPDDLDRFK 244

Query: 61  DRAMYVKYVGETVTTGSPS-ESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSK 119
           DR+MYV+Y  +   + +PS E DGVF+L SFD++T+ CTW LADVR+NREKAGKGRPL+K
Sbjct: 245 DRSMYVRYAIDDDDSMNPSAEGDGVFKLESFDLDTKYCTWSLADVRVNREKAGKGRPLNK 304

Query: 120 KQREWRLNTTFDSLRLVRLHS 140
           KQREWRL+T FDSLR VRLHS
Sbjct: 305 KQREWRLSTPFDSLRFVRLHS 325

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30699240|ref|NP_849898.1| uncharacterized protein [Arabidopsis thaliana] gi|62320812|dbj|BAD93751.1| hypothetical protein [Arabidopsis thaliana] gi|110742469|dbj|BAE99153.1| hypothetical protein [Arabidopsis thaliana] gi|114050645|gb|ABI49472.1| At1g77122 [Arabidopsis thaliana] gi|332197817|gb|AEE35938.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/142 (71%), Positives = 120/142 (84%), Gaps = 4/142 (2%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
           ++NK GSP+MEDIEAF T YRA+L EAE+AKSIP+N SLEVSSPGVERVVRIP +L+R+K
Sbjct: 186 LTNKFGSPTMEDIEAFSTIYRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYK 245

Query: 61  DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
           DR MYV+Y  E   T    E DG+FRL+SFD+E + C WG+AD+R+NREKAGKGRPLSKK
Sbjct: 246 DRPMYVRYTNEDTET----EGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKK 301

Query: 121 QREWRLNTTFDSLRLVRLHSDC 142
           QREWRL T F+SLRLVRLHS+C
Sbjct: 302 QREWRLETAFESLRLVRLHSEC 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:1005716723	323	AT1G77122 "AT1G77122" [Arabido	0.971	0.427	0.711	5.6e-52
TAIR|locus:2033263	305	AT1G69210 "AT1G69210" [Arabido	0.978	0.455	0.453	3.9e-28

TAIR|locus:1005716723 AT1G77122 "AT1G77122" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 101/142 (71%), Positives = 120/142 (84%)

Query:     1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
             ++NK GSP+MEDIEAF T YRA+L EAE+AKSIP+N SLEVSSPGVERVVRIP +L+R+K
Sbjct:   186 LTNKFGSPTMEDIEAFSTIYRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYK 245

Query:    61 DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
             DR MYV+Y  E   T    E DG+FRL+SFD+E + C WG+AD+R+NREKAGKGRPLSKK
Sbjct:   246 DRPMYVRYTNEDTET----EGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKK 301

Query:   121 QREWRLNTTFDSLRLVRLHSDC 142
             QREWRL T F+SLRLVRLHS+C
Sbjct:   302 QREWRLETAFESLRLVRLHSEC 323

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033263 AT1G69210 "AT1G69210" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 64/141 (45%), Positives = 90/141 (63%)

Query:     1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFK 60
             +S + G P+M+++E F   ++ RLD+A   K IPE+ +LEVSSPG ER++R+P +L RFK
Sbjct:   167 LSTEYGCPTMDELEEFSREFKKRLDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFK 226

Query:    61 DRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKK 120
             D  M V YV ET      +   GVF L S D E++ C W LADVR NR+   KGRPLS+K
Sbjct:   227 DMPMTVSYVEET--NSRKAVKSGVFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRK 284

Query:   121 QREWRLNTTFDSLRLVRLHSD 141
             Q++ R+   F   + + L+ D
Sbjct:   285 QKDLRITLPFADHKKINLYLD 305


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       142   0.00091  102 3  11 22  0.47    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  132 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.96u 0.09s 15.05t   Elapsed:  00:00:01
  Total cpu time:  14.96u 0.09s 15.05t   Elapsed:  00:00:01
  Start:  Sat May 11 02:05:44 2013   End:  Sat May 11 02:05:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014291001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (207 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam02576	140	pfam02576, DUF150, Uncharacterized BCR, YhbC famil	2e-09
COG0779	153	COG0779, COG0779, Uncharacterized protein conserve	3e-06
PRK00092	154	PRK00092, PRK00092, ribosome maturation protein Ri	2e-05
PRK14635	162	PRK14635, PRK14635, hypothetical protein; Provisio	3e-05
PRK14647	159	PRK14647, PRK14647, hypothetical protein; Provisio	0.003

>gnl|CDD|217116 pfam02576, DUF150, Uncharacterized BCR, YhbC family COG0779

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 4   KSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 63
           K G  +++D E       A LD  +    IPE   LEVSSPG+ER ++      RF  + 
Sbjct: 33  KDGGVTLDDCEEVSRAISALLDVEDP---IPEAYFLEVSSPGLERPLKTERHFARFIGK- 88

Query: 64  MYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINR 108
             VK     V+   P +    F     +++ +  T  + D    R
Sbjct: 89  -LVK-----VSLKEPIDGRKNFTGKLLEVDGDTVTIEVDDKERKR 127

Length = 140

>gnl|CDD|223850 COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 12/114 (10%)

Query: 4   KSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 63
           K G  +++D         A LD  +    I     LEVSSPG++R ++      RF    
Sbjct: 45  KEGGVTLDDCADVSRAISALLDVED---PIEGAYFLEVSSPGLDRPLKTAEHFARFIGE- 100

Query: 64  MYVKYVGETVTTGSPSESDGVFR--LISFDMETECCTWGLADVRINREKAGKGR 115
             VK     V    P E    F   +++ D ET        +V I      K R
Sbjct: 101 -KVK-----VKLRLPIEGRKKFEGKIVAVDGETVTLEVDGKEVEIPFSDIAKAR 148

Length = 153

>gnl|CDD|234627 PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 4   KSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRA 63
           K G   ++D E       A LD  +    IP   +LEVSSPG++R    PL     K R 
Sbjct: 44  KEGGIDLDDCEEVSRQISAVLDVEDP---IPGAYTLEVSSPGLDR----PL----KKARD 92

Query: 64  MYVKYVGETV--TTGSPSESDGVF--RLISFDMET 94
            + +++G  V      P +    F   L++ D ET
Sbjct: 93  -FRRFIGREVKVKLYEPIDGRKKFQGILLAVDGET 126

Length = 154

>gnl|CDD|184774 PRK14635, PRK14635, hypothetical protein; Provisional

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 1   MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPE-NTSLEVSSPGVERVVRIPLELERF 59
           + +  GS S+ +    C     +L E E+ +  P+ + +L+VSS G ER +R+P +L+RF
Sbjct: 43  LEHPYGSVSLLE----CEQVSRKLKE-ELERISPDLDFTLKVSSAGAERKLRLPEDLDRF 97

Query: 60  KDRAMYVKYVGETVTTGSPSESDGVFRLISFD 91
             R + V+ V  +  +      +G+FRL++ D
Sbjct: 98  --RGIPVRLVFRSEESE--KWQEGIFRLVNRD 125

Length = 162

>gnl|CDD|173110 PRK14647, PRK14647, hypothetical protein; Provisional

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 3   NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 62
           +K G  +++D           LD  +    IPE  +LEVSSPG++R ++   + ER+  R
Sbjct: 44  DKEGGVNLDDCAEVSRELSEILDVEDF---IPERYTLEVSSPGLDRPLKKEADYERYAGR 100

Query: 63  AMYVK 67
            + V+
Sbjct: 101 LVKVR 105

Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PRK14633	150	hypothetical protein; Provisional	100.0
PRK14640	152	hypothetical protein; Provisional	100.0
PRK14634	155	hypothetical protein; Provisional	100.0
COG0779	153	Uncharacterized protein conserved in bacteria [Fun	100.0
PRK14647	159	hypothetical protein; Provisional	100.0
PRK14632	172	hypothetical protein; Provisional	100.0
PRK14646	155	hypothetical protein; Provisional	100.0
PRK14639	140	hypothetical protein; Provisional	100.0
PRK14643	164	hypothetical protein; Provisional	100.0
PRK14636	176	hypothetical protein; Provisional	100.0
PRK00092	154	ribosome maturation protein RimP; Reviewed	100.0
PRK14638	150	hypothetical protein; Provisional	100.0
PRK14631	174	hypothetical protein; Provisional	100.0
PRK14641	173	hypothetical protein; Provisional	100.0
PF02576	141	DUF150: Uncharacterised BCR, YhbC family COG0779;	100.0
PRK02001	152	hypothetical protein; Validated	100.0
PRK14635	162	hypothetical protein; Provisional	99.98
PRK14642	197	hypothetical protein; Provisional	99.97
PRK14630	143	hypothetical protein; Provisional	99.97
PRK14637	151	hypothetical protein; Provisional	99.97
PRK14644	136	hypothetical protein; Provisional	99.97
PRK14645	154	hypothetical protein; Provisional	99.97
cd01734	83	YlxS_C YxlS is a Bacillus subtilis gene of unknown	99.92

>PRK14633 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-36  Score=227.11  Aligned_cols=110  Identities=20%  Similarity=0.300  Sum_probs=100.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|||+|||+.+||+|+.+||++|   ||+++|+|||||||++|||++++||+||+|+.|+|+++.       +.+
T Consensus        37 ~ID~~~Gv~lddC~~vSr~i~~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~v~V~~~~-------~~~  106 (150)
T PRK14633         37 FIDHENGVSVDDCQIVSKEISAVFDVED---PVSGKYILEVSSPGMNRQIFNIIQAQALVGFNVKAVTLA-------PVG  106 (150)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhccCc---CCCCCeEEEEeCCCCCCCCCCHHHHHHhCCCeEEEEEec-------ccC
Confidence            4799999999999999999999999998   899999999999999999999999999999999999999       888


Q ss_pred             CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           81 SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        81 g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      |+++|  +|.+++++++++.+.            .|+         .++|||++|++|||.++
T Consensus       107 ~~~~~~G~L~~v~~~~i~l~~~------------~~~---------~~~i~~~~I~ka~l~~~  148 (150)
T PRK14633        107 SQTKFKGVLERVEGNNVILNLE------------DGK---------EISFDFDELKKLRVSPD  148 (150)
T ss_pred             CcEEEEEEEEEEeCCEEEEEEc------------CCc---------EEEEEhHHeeeEEEecc
Confidence            99999  999999999988642            111         46899999999999875

>PRK14640 hypothetical protein; Provisional

Probab=100.00  E-value=3.9e-36  Score=227.36  Aligned_cols=109  Identities=18%  Similarity=0.241  Sum_probs=100.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|||+|||+.+||+|+.+||++|   ||+++|+|||||||++|||++++||+||+|+.|+|+++.       +++
T Consensus        40 ~ID~~~gv~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGl~RpL~~~~~f~r~~G~~v~V~l~~-------~~~  109 (152)
T PRK14640         40 YIDGENGVSVENCAEVSHQVGAIMDVED---PITEEYYLEVSSPGLDRPLFKVAQFEKYVGQEAAVTLRM-------ATN  109 (152)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcccc---cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEec-------ccC
Confidence            4799999999999999999999999998   899999999999999999999999999999999999999       888


Q ss_pred             CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           81 SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        81 g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      |+++|  +|.+++++++++.+.             |+         .+.|||++|++|||.++
T Consensus       110 ~~k~~~G~L~~v~~~~v~l~~~-------------~~---------~~~i~~~~I~ka~l~~~  150 (152)
T PRK14640        110 NRRKFKGVIKAVQGDMITLTVD-------------GK---------DEVLAFTNIQKANIVPN  150 (152)
T ss_pred             CceEEEEEEEEEeCCEEEEEEC-------------Ce---------EEEEEhHHeeeEEEecc
Confidence            99999  999999999888742             22         35799999999999865

>PRK14634 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=225.43  Aligned_cols=109  Identities=21%  Similarity=0.260  Sum_probs=99.7

Q ss_pred             CCCCCCC--CCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCC
Q 032340            1 MSNKSGS--PSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSP   78 (142)
Q Consensus         1 liD~~~g--vslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~   78 (142)
                      +||+++|  ||+|||+.+||+|++.||++|   ||+++|+|||||||++|||++++||+||+|+.|+|++++       +
T Consensus        41 ~ID~~~g~~v~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~V~V~l~~-------~  110 (155)
T PRK14634         41 QIRRSSGSDVSLDDCAGFSGPMGEALEASQ---LLTEAYVLEISSPGIGDQLSSDRDFQTFRGFPVEVSHRD-------D  110 (155)
T ss_pred             EEECCCCCcccHHHHHHHHHHHHHHhcccc---cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEec-------C
Confidence            4788888  999999999999999999998   899999999999999999999999999999999999999       8


Q ss_pred             CCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           79 SESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        79 ~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      .+|+++|  +|.+++++.+++.+.             |+         .++|||++|++|||..+
T Consensus       111 ~~~~k~~~G~L~~~~~~~v~l~~~-------------~~---------~~~i~~~~I~ka~l~~~  153 (155)
T PRK14634        111 DGSEQRLEGLLLERNEDHLQINIR-------------GR---------IKRIPRDSVISVRLTNP  153 (155)
T ss_pred             CCCeEEEEEEEEEEeCCEEEEEEC-------------CE---------EEEEEHHHeeeEEeCCC
Confidence            8899999  999999999988641             11         46899999999999875

>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=224.36  Aligned_cols=109  Identities=27%  Similarity=0.402  Sum_probs=100.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||++||||+|||+++||+||+.||++|   ||++.|+|||||||++|||++.+||.||+|+.|+|+++.       |++
T Consensus        42 ~id~~g~v~lddC~~vSr~is~~LD~ed---pi~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~Vkv~l~~-------~~~  111 (153)
T COG0779          42 YIDKEGGVTLDDCADVSRAISALLDVED---PIEGAYFLEVSSPGLDRPLKTAEHFARFIGEKVKVKLRL-------PIE  111 (153)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHhccCC---cccccEEEEeeCCCCCCCcCCHHHHHHhcCcEEEEEEec-------ccC
Confidence            4789999999999999999999999998   999999999999999999999999999999999999999       999


Q ss_pred             CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           81 SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        81 g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      |+++|  .|..++++.+++.+.             ++         .++|||++|++|||++.
T Consensus       112 ~~k~~~G~i~~~d~~~v~~~~~-------------~k---------~v~Ip~~~i~kArl~~~  152 (153)
T COG0779         112 GRKKFEGKIVAVDGETVTLEVD-------------GK---------EVEIPFSDIAKARLVPE  152 (153)
T ss_pred             CceEEEEEEEEEcCCeEEEEEC-------------CE---------EEEEEcccchhheeccc
Confidence            99999  999999999887642             22         47999999999999874

>PRK14647 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-35  Score=224.60  Aligned_cols=110  Identities=23%  Similarity=0.357  Sum_probs=98.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|||+|||+.+||+|+++||++|   ||+++|+|||||||++|||++++||+||+|+.|+|+++.       +++
T Consensus        42 ~ID~~~gvslddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPG~~RpL~~~~~f~r~~G~~v~V~l~~-------~~~  111 (159)
T PRK14647         42 FIDKEGGVNLDDCAEVSRELSEILDVED---FIPERYTLEVSSPGLDRPLKKEADYERYAGRLVKVRTFE-------LLA  111 (159)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHcccc---cCCCCeEEEEcCCCCCCcCCCHHHHHHhCCcEEEEEEec-------ccc
Confidence            4799999999999999999999999988   899999999999999999999999999999999999998       653


Q ss_pred             -----CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           81 -----SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        81 -----g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                           |+++|  +|.+++++.+++++.            .++         .++|||++|++|+|.++
T Consensus       112 ~~~~~~~~~~~G~L~~~~~~~v~l~~~------------~~~---------~~~i~~~~I~ka~l~~e  158 (159)
T PRK14647        112 DEAGNKRKTFLGELEGLADGVVTIALK------------EGQ---------QARIPLDKIAKANLEFE  158 (159)
T ss_pred             ccccCCceEEEEEEEeecCCEEEEEEc------------CCc---------EEEEEHHHCCEEEEeee
Confidence                 67888  999999999887641            111         46899999999999876

>PRK14632 hypothetical protein; Provisional

Probab=100.00  E-value=3.8e-35  Score=225.96  Aligned_cols=117  Identities=18%  Similarity=0.248  Sum_probs=100.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCC-
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPS-   79 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~-   79 (142)
                      +||+++|||+|||+.+||+|+++||+++   +|+++|+|||||||++|||++++||+||+|+.|+|++++       +. 
T Consensus        41 ~ID~~~GV~ldDC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~~~f~r~iG~~V~V~l~~-------~~~  110 (172)
T PRK14632         41 FVDGPEGVTIDQCAEVSRHVGLALEVED---VISSAYVLEVSSPGLERPFFRAEQMSPYVGRQIELTLID-------PTP  110 (172)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcccc---cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCEEEEEEec-------ccc
Confidence            4799999999999999999999999988   899999999999999999999999999999999999998       66 


Q ss_pred             --CCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           80 --ESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        80 --~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                        +|+++|  +|.+++++.+++++.          .+++++.    ....++|||++|++|||.++
T Consensus       111 ~~~g~k~~~G~L~~v~~~~i~l~~~----------~~~~~~~----~~~~~~i~~~~I~ka~l~~~  162 (172)
T PRK14632        111 EWPGRRKFRGELLAVEGDTVVLRPE----------GAPAPEA----EEAVLRTSWQGVRKANLIHV  162 (172)
T ss_pred             ccCCceEEEEEEEEEeCCEEEEEEc----------CcccccC----CceeEEEEhHHccEEEEEEE
Confidence              478899  999999999988742          1111111    11247899999999999865

>PRK14646 hypothetical protein; Provisional

Probab=100.00  E-value=4.2e-35  Score=222.41  Aligned_cols=107  Identities=18%  Similarity=0.219  Sum_probs=97.1

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCC
Q 032340            1 MSNKS--GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSP   78 (142)
Q Consensus         1 liD~~--~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~   78 (142)
                      +||++  +|||+|||+.+||+|+++||++|   ||++.|+|||||||++|||++++||+||+|+.|+|++++       +
T Consensus        41 ~IDk~~g~gVtldDC~~vSr~is~~LD~~D---~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~v~V~l~~-------~  110 (155)
T PRK14646         41 IIKKTNGDDISLDDCALFNTPASEEIENSN---LLNCSYVLEISSQGVSDELTSERDFKTFKGFPVNVELNQ-------K  110 (155)
T ss_pred             EEECCCCCCccHHHHHHHHHHHHHHhCcCC---CCCCCeEEEEcCCCCCCcCCCHHHHHHhCCCEEEEEEec-------C
Confidence            36886  36999999999999999999998   899999999999999999999999999999999999999       8


Q ss_pred             CCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEe
Q 032340           79 SESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLH  139 (142)
Q Consensus        79 ~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~  139 (142)
                      .+|++.|  .|.+++++.+++..             .|+         .+.|||++|++|||+
T Consensus       111 ~~~~~~~~G~L~~~~~~~v~l~~-------------~g~---------~~~i~~~~I~ka~L~  151 (155)
T PRK14646        111 NSKIKFLNGLLYEKSKDYLAINI-------------KGK---------IKKIPFNEVLKISLC  151 (155)
T ss_pred             cCCeEEEEEEEEEEeCCEEEEEE-------------CCE---------EEEEEHHHeeeEEeC
Confidence            8899999  99999999988863             122         468999999999996

>PRK14639 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=216.57  Aligned_cols=107  Identities=18%  Similarity=0.237  Sum_probs=94.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|||+|||+.+||+|+++||++|   ||+++|+|||||||++|||++++||+||+|+.|+|++.+          
T Consensus        31 ~Id~~~gv~iddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGl~RpL~~~~~f~r~~G~~v~v~l~~----------   97 (140)
T PRK14639         31 YITKEGGVNLDDCERLSELLSPIFDVEP---PVSGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNE----------   97 (140)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhcccc---ccCCCeEEEEeCCCCCCcCCCHHHHHHhCCCEEEEEECC----------
Confidence            4799999999999999999999999998   899999999999999999999999999999999999864          


Q ss_pred             CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           81 SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        81 g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                       .++|  +|.++++++++++..           ..++         .++|||++|++|||+++
T Consensus        98 -~~~~~G~L~~~~~~~i~l~~~-----------~~~~---------~~~i~~~~I~ka~l~~~  139 (140)
T PRK14639         98 -KEKFEGKIVSVDDENITLENL-----------ENKE---------KTTINFNDIKKAKTYVE  139 (140)
T ss_pred             -CcEEEEEEEEEeCCEEEEEEc-----------cCCc---------EEEEEhHHeeeEEEEEe
Confidence             4666  999999999888531           0111         36899999999999986

>PRK14643 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=221.05  Aligned_cols=111  Identities=16%  Similarity=0.325  Sum_probs=97.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCce
Q 032340            5 SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGV   84 (142)
Q Consensus         5 ~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~   84 (142)
                      +||||+|||+.+||+||++||++|   ||++.|+|||||||++|||++++||+||+|+.|+|+++.       +.+|+++
T Consensus        51 ~ggvtldDC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGleRpL~~~~df~r~~G~~V~V~l~~-------~~~g~k~  120 (164)
T PRK14643         51 NKPLDFDILIKANDLVSNKIDQFI---KTSEKYLLEISSSGIEKQIRSQEELVKALNQWVYVQLNN-------EIKKVKE  120 (164)
T ss_pred             CCCcCHHHHHHHHHHHHHHhCccC---CCCCCeEEEecCCCCCCCCCCHHHHHHhcCCeEEEEEec-------ccCCceE
Confidence            468999999999999999999998   899999999999999999999999999999999999999       8899999


Q ss_pred             E--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           85 F--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        85 ~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      |  .|.+++++.+++...+. ++      ..++         .++|||++|++|||+++
T Consensus       121 ~~G~L~~~~~~~~~l~l~~~-~~------~~~~---------~~~ip~~~I~karl~~~  163 (164)
T PRK14643        121 FEGYVTKYNVNTNTFRFTFF-IK------GQKK---------KLDVKYEQIKFIRYAVR  163 (164)
T ss_pred             EEEEEEEEeCCcEEEEEEee-cc------CcCc---------EEEEeHHHhhheEeccc
Confidence            9  99999999887764321 00      0111         46899999999999876

>PRK14636 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-34  Score=221.82  Aligned_cols=110  Identities=22%  Similarity=0.334  Sum_probs=98.2

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCC
Q 032340            1 MSNKS--GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSP   78 (142)
Q Consensus         1 liD~~--~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~   78 (142)
                      +||++  ||||+|||+.+||+||..||+.+   ||++.|+|||||||++|||++++||+||+|+.|+|+++.       +
T Consensus        39 ~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~-------~  108 (176)
T PRK14636         39 MAERPDTRQLVIEDCAALSRRLSDVFDELD---PIEDAYRLEVSSPGIDRPLTRPKDFADWAGHEARIALSE-------P  108 (176)
T ss_pred             EEECCCCCCcCHHHHHHHHHHHHHHhccCc---CCCCCeEEEEeCCCCCCCCCCHHHHHHhCCCeEEEEEec-------c
Confidence            36775  46999999999999999999988   899999999999999999999999999999999999999       8


Q ss_pred             CCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           79 SESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        79 ~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      ++|+++|  +|.+++++.+++.+.            +++         .++|||++|++|||.++
T Consensus       109 ~~g~k~~~G~L~~v~~~~v~l~~~------------~~~---------~~~i~~~~I~kA~l~~~  152 (176)
T PRK14636        109 LDGRKQFRGELKGIDGDTVTIADN------------KAG---------EVILPFAAIESAKLILT  152 (176)
T ss_pred             cCCeEEEEEEEEEEeCCEEEEEEc------------CCc---------EEEEEhHHcceEEEecc
Confidence            8899999  999999999887642            111         36899999999999864

>PRK00092 ribosome maturation protein RimP; Reviewed

Probab=100.00  E-value=3.3e-34  Score=216.78  Aligned_cols=111  Identities=30%  Similarity=0.454  Sum_probs=99.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|+|+|||+.+||+|+.+||+.+   +|+++|+|||||||++|||++++||+||+|+.|+|++++       +.+
T Consensus        41 ~Id~~~gv~iddc~~~Sr~is~~LD~~d---~i~~~Y~LEVSSPGi~RpL~~~~~f~r~~G~~v~V~~~~-------~~~  110 (154)
T PRK00092         41 YIDKEGGIDLDDCEEVSRQISAVLDVED---PIPGAYTLEVSSPGLDRPLKKARDFRRFIGREVKVKLYE-------PID  110 (154)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcccc---CCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEEc-------ccC
Confidence            4788999999999999999999999988   899999999999999999999999999999999999998       777


Q ss_pred             CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           81 SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        81 g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      |.+.|  +|.+++++.+++.+.             |++   +    .++|||++|++|+|.++
T Consensus       111 ~~~~~~G~L~~~~~~~i~l~~~-------------~~~---~----~~~i~~~~I~~a~l~~e  153 (154)
T PRK00092        111 GRKKFQGILLAVDGETVTLEVE-------------GKE---K----EVEIPLDNIAKARLVVE  153 (154)
T ss_pred             CceEEEEEEEEeeCCEEEEEEC-------------CCe---E----EEEEEHHHcceEEEeee
Confidence            88888  999999999887642             111   1    46899999999999876

>PRK14638 hypothetical protein; Provisional

Probab=100.00  E-value=6.3e-34  Score=214.95  Aligned_cols=105  Identities=25%  Similarity=0.341  Sum_probs=93.3

Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCC
Q 032340            1 MSNKSGS-PSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPS   79 (142)
Q Consensus         1 liD~~~g-vslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~   79 (142)
                      +||+++| ||+|||+.+||+|+++||++|   +|+++|+|||||||++|||++++||+||+|+.|+|++.+         
T Consensus        42 ~ID~~~G~v~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~v~V~~~~---------  109 (150)
T PRK14638         42 IIDNPVGYVSVRDCELFSREIERFLDRED---LIEHSYTLEVSSPGLDRPLRGPKDYVRFTGKLAKIVTKD---------  109 (150)
T ss_pred             EEECCCCCcCHHHHHHHHHHHHHHhcccc---ccCCceEEEEeCCCCCCCCCCHHHHHHhCCCEEEEEECC---------
Confidence            4788866 999999999999999999998   899999999999999999999999999999999999964         


Q ss_pred             CCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           80 ESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        80 ~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                        .++|  +|.+++++.+++..             +++         .++|||++|++|||.++
T Consensus       110 --~k~~~G~L~~~~~~~i~l~~-------------~~~---------~~~i~~~~I~~a~l~~e  149 (150)
T PRK14638        110 --GKTFIGRIESFVDGTITISD-------------EKE---------KYEINIDDVKRANLEVE  149 (150)
T ss_pred             --CcEEEEEEEEEeCCEEEEEE-------------CCc---------EEEEEhHHcceEEEeee
Confidence              5667  99999999888751             111         36899999999999875

>PRK14631 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=218.06  Aligned_cols=106  Identities=21%  Similarity=0.239  Sum_probs=95.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCce
Q 032340            5 SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGV   84 (142)
Q Consensus         5 ~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~   84 (142)
                      ++|||+|||+.+||+|+++||++|   ||++.|+|||||||++|||++++||+||+|+.|+|+++.       +.+|+++
T Consensus        64 ~~gvtiddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~-------~~~~~k~  133 (174)
T PRK14631         64 GRGIGVEDCVRVTQQVGAMLDVHD---PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIA-------AVENRRK  133 (174)
T ss_pred             CCCcCHHHHHHHHHHHHHHhcccc---cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEec-------ccCCceE
Confidence            468999999999999999999998   899999999999999999999999999999999999999       8889999


Q ss_pred             E--EEEeEe--CCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           85 F--RLISFD--METECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        85 ~--~L~~~~--~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      |  +|.+++  ++.+++.+.            .++         .+.|||++|++|||.+.
T Consensus       134 ~~G~L~~v~~~~~~v~l~~~------------~~~---------~~~i~~~~I~ka~L~~~  173 (174)
T PRK14631        134 FQAKLLAVDLENEEIQVEVE------------GKH---------VLDIDSNNIDKANLIYQ  173 (174)
T ss_pred             EEEEEEEeecCCCEEEEEEc------------CCc---------EEEEEhHHcceEEEeec
Confidence            9  999999  888877642            011         36899999999999864

>PRK14641 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=217.06  Aligned_cols=120  Identities=20%  Similarity=0.277  Sum_probs=98.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCC----CCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIP----ENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTG   76 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~----~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~   76 (142)
                      +||+++|||||||+++||+|++.||+++   +++    ++|+|||||||++|||++++||+||+|+.|+|++++      
T Consensus        43 ~ID~~~gv~lDdC~~vSr~Is~~LD~~d---~i~~~~~~~Y~LEVSSPGldRpL~~~~~f~r~~G~~V~V~l~~------  113 (173)
T PRK14641         43 LLDADTGIRIDQCAFFSRRIRERLEEDE---ELLGLVGEDFDLMVSSPGLGEPIILPRQYGRHVGRLLRVTYRD------  113 (173)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHhCccc---ccccCCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCEEEEEEec------
Confidence            4799999999999999999999999988   554    799999999999999999999999999999999998      


Q ss_pred             CCCCCCceE--EEEeEe-----CCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeecC
Q 032340           77 SPSESDGVF--RLISFD-----METECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC  142 (142)
Q Consensus        77 ~~~~g~k~~--~L~~~~-----~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~~  142 (142)
                       +.+|+++|  +|.+++     ++.+++...        .+.+|++    +.+...+++||++|++|++++|.
T Consensus       114 -~~~~~~~~~G~L~~~~~~~~~~~~v~~~~~--------~~~~~~~----~~~~~~~~v~~~~v~~A~vevE~  173 (173)
T PRK14641        114 -EEGSEHEVTGHLQEVSLTEGEGASIVLKPE--------QKKKKGK----QEETENITLELDAVIRAVPEAEL  173 (173)
T ss_pred             -ccCCeEEEEEEEEeeecccCCCCcEEEEec--------ccccccc----CCCCceEEEEhHHccceeeeeeC
Confidence             88888889  999997     555555421        1112222    11123579999999999999873

>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes []

Probab=100.00  E-value=5.8e-34  Score=212.22  Aligned_cols=110  Identities=34%  Similarity=0.574  Sum_probs=78.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|||+|||+.+||+|++.||.++   +|+++|+|||||||++|||++++||++|+|+.|+|++++       +.+
T Consensus        30 ~id~~~gv~lddc~~~sr~i~~~LD~~d---~i~~~y~LEVSSPG~~r~L~~~~~~~~~iG~~v~v~~~~-------~~~   99 (141)
T PF02576_consen   30 FIDKDGGVSLDDCEKVSRAISALLDAED---PIPEDYTLEVSSPGIDRPLKSPRDFERFIGRKVKVKLKQ-------PVN   99 (141)
T ss_dssp             EEE-SS---HHHHHHHHHHHGGGTTTS-------S-EEEEEE--SSSS--SSHHHHHHH-SEEEEEE-SS--------SS
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHcccc---ccCcceEEEEeCCCCCCcCCCHHHHHHhcCCeEEEEEec-------cCC
Confidence            3688889999999999999999999988   899999999999999999999999999999999999998       778


Q ss_pred             CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEE
Q 032340           81 SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRL  138 (142)
Q Consensus        81 g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl  138 (142)
                      |.+.|  .|.+++++++++.+.           .++++   +    .++|||++|++|||
T Consensus       100 ~~~~~~G~L~~~~~~~i~l~~~-----------~~~~~---~----~~~I~~~~I~ka~L  141 (141)
T PF02576_consen  100 GRKEFEGKLLEVDEDEITLEVE-----------GKGKK---K----EVEIPFSDIKKARL  141 (141)
T ss_dssp             S-SEEEEEEEEEETTEEEEEEE------------SS-E---E----EEEE-SS--SS-EE
T ss_pred             CcEEEEEEEEEEeCCEEEEEEC-----------Cccce---E----EEEEEHHHCceEeC
Confidence            88888  999999999998764           12221   1    57999999999997

; PDB: 1IB8_A.

>PRK02001 hypothetical protein; Validated

Probab=100.00  E-value=7.5e-33  Score=209.53  Aligned_cols=115  Identities=20%  Similarity=0.240  Sum_probs=93.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|||+|||+.+||+|+++||+.+      ++|+|||||||++|||++++||+||+|+.|+|++.+          
T Consensus        36 ~ID~~~Gv~lddC~~vSr~is~~LD~~d------~~Y~LEVSSPGldRpL~~~~~f~r~~G~~v~V~l~~----------   99 (152)
T PRK02001         36 EIDGDEGVWIEDCVELSRAIEHNLDREE------EDFELEVGSAGLTSPLKVPRQYKKNIGRELEVLTKN----------   99 (152)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcCCC------CCeEEEEeCCCCCCcCCCHHHHHHhCCCEEEEEECC----------
Confidence            4799999999999999999999999765      899999999999999999999999999999999964          


Q ss_pred             CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEee
Q 032340           81 SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHS  140 (142)
Q Consensus        81 g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~  140 (142)
                       .+.|  +|.+++++++++.+.-..    ..+.+||+...    ...++|||++|++|+|.+
T Consensus       100 -~~~~~G~L~~~~~~~i~l~~~~~~----~~~~~k~~~~~----~~~~~i~~~~I~ka~l~~  152 (152)
T PRK02001        100 -GKKIEGELKSADENDITLEVKARE----PKEGGKGKVTV----EKEETITYDDIKEAKVII  152 (152)
T ss_pred             -CCEEEEEEEEEeCCEEEEEEcccc----ccccccccccc----ceeEEEEhHheeeEEEeC
Confidence             5667  999999999988753110    01122333221    225789999999999974

>PRK14635 hypothetical protein; Provisional

Probab=99.98  E-value=1.1e-31  Score=205.01  Aligned_cols=110  Identities=22%  Similarity=0.283  Sum_probs=89.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCce
Q 032340            5 SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGV   84 (142)
Q Consensus         5 ~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~   84 (142)
                      +||||||||+++||+|+++||+.+   |+ ++|+|||||||++|||++++||+||+|+.|+|++..+         |.++
T Consensus        47 ~~gv~lddC~~vSr~is~~LD~~d---~~-~~Y~LEVSSPGldRpL~~~~~~~r~~G~~v~v~~~~~---------~~~~  113 (162)
T PRK14635         47 YGSVSLLECEQVSRKLKEELERIS---PD-LDFTLKVSSAGAERKLRLPEDLDRFRGIPVRLVFRSE---------ESEK  113 (162)
T ss_pred             CCCcCHHHHHHHHHHHHHHhCCCC---CC-CCeEEEEcCCCCCCcCCCHHHHHHhCCCEEEEEEecC---------CCcE
Confidence            689999999999999999999887   65 8999999999999999999999999999999998652         1223


Q ss_pred             E-----EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           85 F-----RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        85 ~-----~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      |     +|.+++++++++.+..           |++++..   ...++|||++|++|||.++
T Consensus       114 ~~g~~g~L~~~~~~~v~l~~~~-----------k~~~~~~---~~~~~ip~~~I~ka~l~~e  161 (162)
T PRK14635        114 WQEGIFRLVNRDGDQVELEKFQ-----------KGKKSKV---KKQTTLNLKDILKGNLYVE  161 (162)
T ss_pred             EEecceEEEEEcCCEEEEEEec-----------ccccccC---CeEEEEEhHHeeeeEEEEe
Confidence            2     6999999998887531           1111111   1247899999999999986

>PRK14642 hypothetical protein; Provisional

Probab=99.97  E-value=1.2e-31  Score=209.92  Aligned_cols=121  Identities=24%  Similarity=0.291  Sum_probs=96.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC----
Q 032340            5 SGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE----   80 (142)
Q Consensus         5 ~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~----   80 (142)
                      ++|||+|||+.+||+|+.+||+++    . +.|+||||||||+|||++++||+||+|+.|+|+++.       +++    
T Consensus        49 ~~gVtidDC~~vSR~Is~~LDve~----~-~y~~LEVSSPGldRPLk~~~df~rfiG~~V~V~l~~-------pi~~~~~  116 (197)
T PRK14642         49 EQFVTVEDCEKVTRQLQFALEVDG----V-DYKRLEVSSPGIDRPLRHEQDFERFAGEVIDITLKA-------PIGAAAG  116 (197)
T ss_pred             CCCccHHHHHHHHHHHHHHhcccC----c-cccEEEEeCCCCCCCCCCHHHHHHhCCCeEEEEEec-------ccccccc
Confidence            468999999999999999999876    2 445899999999999999999999999999999998       555    


Q ss_pred             -----CCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEee
Q 032340           81 -----SDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHS  140 (142)
Q Consensus        81 -----g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~  140 (142)
                           ++++|  +|.++++++++|+|..++.+..-+...|||.+   .+...+.|+|++|++|||.+
T Consensus       117 ~~~~~~rk~f~G~L~~~~~~~i~l~~~~~~~~k~g~~~~k~~~~---~~~~~~~~~~~eik~a~l~p  180 (197)
T PRK14642        117 GQVSANRKKFRGTLERAESGGWQIVWSDEPPVKPGQRVSKKRVP---APLQALGFTLDELREARLAP  180 (197)
T ss_pred             ccccCCceEEEEEEEEEcCCEEEEEEeecccCCCcccccccccc---ccceeEEeehhheeeEEEEE
Confidence                 78899  99999999999999743211110011233321   12235899999999999975

>PRK14630 hypothetical protein; Provisional

Probab=99.97  E-value=7.5e-32  Score=202.26  Aligned_cols=102  Identities=17%  Similarity=0.278  Sum_probs=88.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|||+|||+.+||+|+..||  +   ||+++|+|||||||++|||++++||+||+|+.|+|++..       +..
T Consensus        42 ~Id~~~gV~idDC~~vSr~i~~~ld--~---~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~v~V~l~~-------~~~  109 (143)
T PRK14630         42 VLYKKDSFGVDTLCDLHKMILLILE--A---VLKYNFSLEISTPGINRKIKSDREFKIFEGKKIKLMLDN-------DFE  109 (143)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhc--c---cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCEEEEEEcC-------cce
Confidence            4789999999999999999999996  4   789999999999999999999999999999999999977       432


Q ss_pred             CCceEEEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEe
Q 032340           81 SDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLH  139 (142)
Q Consensus        81 g~k~~~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~  139 (142)
                       .+  .|.+++++++++..             .++         .+.|||++|++|||.
T Consensus       110 -~G--~L~~~~d~~i~l~~-------------~~~---------~~~i~~~~I~ka~lv  143 (143)
T PRK14630        110 -EG--FILEAKADSFIFKT-------------DSK---------EVNVLYSDVKKAKLS  143 (143)
T ss_pred             -EE--EEEEEeCCEEEEEE-------------CCE---------EEEEEhHhcceEEEC
Confidence             11  79999999988752             111         478999999999984

>PRK14637 hypothetical protein; Provisional

Probab=99.97  E-value=2.3e-31  Score=201.24  Aligned_cols=104  Identities=22%  Similarity=0.324  Sum_probs=88.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSE   80 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~   80 (142)
                      +||+++|||+|||+.+||+|++.||..+   + .++|+|||||||++|||++++||+||+|+.|+|++..          
T Consensus        42 ~ID~~~gV~iddC~~vSr~Is~~LD~~~---~-~~~y~LEVSSPGldRpL~~~~~f~r~~G~~V~V~l~~----------  107 (151)
T PRK14637         42 VIYSAGGVGLDDCARVHRILVPRLEALG---G-VRDVFLEVSSPGIERVIKNAAEFSIFVGETVKVWFEC----------  107 (151)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcccc---c-ccCcEEEEeCCCCCCCCCCHHHHHHhCCCEEEEEECC----------
Confidence            4799999999999999999999999754   2 4789999999999999999999999999999999822          


Q ss_pred             CCceE---EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           81 SDGVF---RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        81 g~k~~---~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                       .+.|   +|.+++++.+++..             +|+         .+.|||++|++|||++.
T Consensus       108 -~~~~~~G~L~~~~d~~v~l~~-------------~~~---------~~~i~~~~I~ka~L~~~  148 (151)
T PRK14637        108 -TGQWQVGTIAEADETCLVLTS-------------DGV---------PVTIPYVQITKAQLHPA  148 (151)
T ss_pred             -CCcEEEEEEEEEeCCEEEEEE-------------CCE---------EEEEEHHHeeeEEEEEE
Confidence             2222   89999999988762             111         46899999999999874

>PRK14644 hypothetical protein; Provisional

Probab=99.97  E-value=3.5e-30  Score=191.81  Aligned_cols=102  Identities=21%  Similarity=0.269  Sum_probs=89.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCC
Q 032340            2 SNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSES   81 (142)
Q Consensus         2 iD~~~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g   81 (142)
                      ||++   ++|||+.+||+|+++||+.+   |++++|+|||||||++|||++ +||+||+|+.|+|++++       +++|
T Consensus        33 Idk~---~iddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~-~~f~r~~G~~v~V~l~~-------~~~~   98 (136)
T PRK14644         33 LNSR---DLKDIEELTKEISDFIDNLS---VEFDFDSLDISSPGFDMDYET-DELENHIGEIIDVSLNK-------EVNK   98 (136)
T ss_pred             ECCC---CHHHHHHHHHHHHHHhcccc---CCCCCeEEEEECCCCCCCCCH-HHHHHhCCCeEEEEEcc-------CcCC
Confidence            5653   79999999999999999998   899999999999999999998 69999999999999999       8889


Q ss_pred             CceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccce
Q 032340           82 DGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRL  135 (142)
Q Consensus        82 ~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~k  135 (142)
                      ++.|  .|.+++++++++.+..           ||+.       ..++|++++|++
T Consensus        99 ~~~~~G~L~~v~~~~i~l~~~~-----------k~~~-------~~i~~~~~~i~~  136 (136)
T PRK14644         99 TDFITGELLENNPETITLKWNC-----------KGQF-------RKVEINKENIKK  136 (136)
T ss_pred             eEEEEEEEEEEeCCEEEEEEec-----------CCcE-------EEEEECHHHhcC
Confidence            9999  9999999999988642           3331       147899999874

>PRK14645 hypothetical protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=195.97  Aligned_cols=99  Identities=21%  Similarity=0.272  Sum_probs=85.6

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHhhhhhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCC
Q 032340            1 MSNKS--GSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSP   78 (142)
Q Consensus         1 liD~~--~gvslddc~~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~   78 (142)
                      +||++  ++|++|||+++||+|+.+||+.|   +|+++|+|||||||++|||++++||+||+|+.|+|+.          
T Consensus        43 ~ID~~~~~~v~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~v~v~~----------  109 (154)
T PRK14645         43 RIDRKDEQPVTVEDLERASRALEAELDRLD---PIEGEYRLEVESPGPKRPLFTARHFERFAGLKAKVRG----------  109 (154)
T ss_pred             EEECCCCCCcCHHHHHHHHHHHHHHhcccc---cCCCceEEEEeCCCCCCCCCCHHHHHHhCCCEEEEEc----------
Confidence            36763  46999999999999999999998   8999999999999999999999999999999999974          


Q ss_pred             CCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeeccccccee
Q 032340           79 SESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLV  136 (142)
Q Consensus        79 ~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~ka  136 (142)
                        ++++|  +|.+++++.+++.+             +|+         .++|||++|+++
T Consensus       110 --~~k~~~G~L~~~~d~~i~l~~-------------~~~---------~~~i~~~~I~~~  145 (154)
T PRK14645        110 --PGENFTGRIKAVSGDQVTFDV-------------GGE---------DRTLRIGTFQAN  145 (154)
T ss_pred             --CCeEEEEEEEEEeCCEEEEEE-------------CCe---------EEEEEHHHhhhh
Confidence              24566  99999999988763             122         468999999755

>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold

Probab=99.92  E-value=2e-24  Score=148.17  Aligned_cols=80  Identities=29%  Similarity=0.356  Sum_probs=69.6

Q ss_pred             eEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCC
Q 032340           37 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKG  114 (142)
Q Consensus        37 Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kg  114 (142)
                      |+|||||||++|||++++||+||+|+.|+|++..       +++|+++|  +|.+++++++++.+.           .|+
T Consensus         1 Y~LEVSSPGl~RpL~~~~~~~r~~G~~v~v~~~~-------~~~~~~~~~G~L~~~~~~~v~l~~~-----------~~~   62 (83)
T cd01734           1 YFLEVSSPGAERPLKKEADFERAVGKYVHVKLYQ-------PIDGQKEFEGTLLGVDDDTVTLEVD-----------IKT   62 (83)
T ss_pred             CEEEEcCCCCCCcCCCHHHHHHhCCCEEEEEEEc-------ccCCeEEEEEEEEeEeCCEEEEEEe-----------cCC
Confidence            8999999999999999999999999999999998       78888888  999999999888742           111


Q ss_pred             CCccccccceeeeecccccceeEEeec
Q 032340          115 RPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus       115 k~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      +       ...+.|||++|++|||.++
T Consensus        63 ~-------~~~~~i~~~~I~ka~l~~~   82 (83)
T cd01734          63 R-------GKTVEIPLDKIAKARLAPE   82 (83)
T ss_pred             C-------CeEEEEEhHHeeEEEEEEE
Confidence            1       1157999999999999876

The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1ib8_A	164	Conserved protein SP14.3; nucleic acid binding pro	2e-05

>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1 Length = 164

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 9   SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 67
           ++ D           LD  +     PE   LE++SPG+ER ++    +     + ++V 
Sbjct: 53  TLNDTADLTEMISPVLDTIKPD-PFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVG 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
1ib8_A	164	Conserved protein SP14.3; nucleic acid binding pro	100.0
1y96_A	86	Gemin6, SIP2, GEM-associated protein 6; SM fold, p	80.17

>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1

Probab=100.00  E-value=9.9e-37  Score=231.90  Aligned_cols=113  Identities=20%  Similarity=0.317  Sum_probs=101.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhh--hhhhcCCCCCCeEEEEecCCCCCCCCChHHHHhcCCCeEEEEEeeccccCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLD--EAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSP   78 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD--~~d~~~~i~~~Y~LEVSSPGieRpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~   78 (142)
                      +||+++|||+|||+.+||+||+.||  ++|   ||+++|+|||||||++|||++++||+||+|+.|+|+++.       |
T Consensus        45 ~ID~~~gi~lddC~~vSr~is~~LD~~~~d---~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~-------~  114 (164)
T 1ib8_A           45 FVDKPEGITLNDTADLTEMISPVLDTIKPD---PFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQ-------A  114 (164)
T ss_dssp             EEECSSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEEEEEECCSSSSCCSSHHHHHHHCSEEEEEECSS-------C
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHhcccccc---CCCCCeEEEEeCCCCCCCCCCHHHHHHhCCcEEEEEEec-------c
Confidence            4799999999999999999999999  887   899999999999999999999999999999999999998       8


Q ss_pred             CCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCccccccceeeeecccccceeEEeec
Q 032340           79 SESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  141 (142)
Q Consensus        79 ~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~~~ip~~~I~karl~~~  141 (142)
                      ++|+++|  +|.+++++.+++.+..           |+.   .    ..++|||++|++|||+++
T Consensus       115 ~~g~k~~~G~L~~~~~~~v~l~~~~-----------k~~---~----~~~~i~~~~I~ka~l~~e  161 (164)
T 1ib8_A          115 IDKQKVFEGTLLAFEEDELTMEYMD-----------KTR---K----KTVQIPYSLVSKARLAVK  161 (164)
T ss_dssp             SSSCSEEEEEEEEEETTEEEEEEEC-----------SSC---E----EEEEECSSCCSSCEEECS
T ss_pred             cCCceEEEEEEEEEeCCEEEEEEec-----------ccC---C----eEEEEEHHHCcEEEEEEE
Confidence            8999999  9999999999988641           111   1    147899999999999986

>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}

Probab=80.17  E-value=3  Score=27.86  Aligned_cols=38  Identities=13%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             CChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEEE
Q 032340           51 RIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTW   99 (142)
Q Consensus        51 ~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~~   99 (142)
                      ++|.+|..++|+.|+|++.+           .+.|  .|.++|.....+.+
T Consensus         7 ~~p~el~~li~KeV~V~l~d-----------g~~y~G~l~tvDp~s~sIvL   46 (86)
T 1y96_A            7 KGPLEWQDYIYKEVRVTASE-----------KNEYKGWVLTTDPVSANIVL   46 (86)
T ss_dssp             SCHHHHHHTTTCEEEEEETT-----------TEEEEEEEEEECTTTCCEEE
T ss_pred             CCHHHHHhhcCCEEEEEEcC-----------CCEEEEEEEEECCCceEEEE
Confidence            46789999999999999987           3455  89999977765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1ib8a2	90	d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0	9e-04

>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: YhbC-like, N-terminal domain
family: YhbC-like, N-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 34.3 bits (79), Expect = 9e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 4  KSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE 47
          K    ++ D           LD  +     PE   LE++SPG+E
Sbjct: 48 KPEGITLNDTADLTEMISPVLDTIK-PDPFPEQYFLEITSPGLE 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1ib8a2	90	Hypothetical protein SP14.3 (SP0552) {Streptococcu	99.69
d1ib8a1	74	Hypothetical protein SP14.3 (SP0552) {Streptococcu	99.61

>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: YhbC-like, N-terminal domain
family: YhbC-like, N-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.69  E-value=4.9e-18  Score=115.89  Aligned_cols=44  Identities=27%  Similarity=0.492  Sum_probs=40.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhhh--hhhcCCCCCCeEEEEecCCCC
Q 032340            1 MSNKSGSPSMEDIEAFCTTYRARLDE--AEIAKSIPENTSLEVSSPGVE   47 (142)
Q Consensus         1 liD~~~gvslddc~~vSr~i~~~LD~--~d~~~~i~~~Y~LEVSSPGie   47 (142)
                      +||+++||++|||+.+||.|+..||.  ++   +|+++|+|||||||+|
T Consensus        45 ~ID~~~gv~iddC~~vSr~is~~LD~~e~d---~i~~~Y~LEVSSPGld   90 (90)
T d1ib8a2          45 FVDKPEGITLNDTADLTEMISPVLDTIKPD---PFPEQYFLEITSPGLE   90 (90)
T ss_dssp             EEECSSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEEEEEECCSSS
T ss_pred             EEECCCCcCHHHHHHHHHHHHHHhcccccc---CCCCCeEEEeeCCCCC
Confidence            47999999999999999999999996  44   8999999999999996

>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Sm-like fold
superfamily: YhbC-like, C-terminal domain
family: YhbC-like, C-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.61  E-value=7.3e-16  Score=100.96  Aligned_cols=69  Identities=14%  Similarity=0.189  Sum_probs=60.5

Q ss_pred             CCCCChHHHHhcCCCeEEEEEeeccccCCCCCCCCceE--EEEeEeCCeeEEEEeecceehhhcccCCCCCcccccccee
Q 032340           48 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR  125 (142)
Q Consensus        48 RpL~~~~~f~r~~G~~v~V~~~~~~~~~~~~~~g~k~~--~L~~~~~~~~~~~~~~~~v~~~~~~~~kgk~~~~k~~~~~  125 (142)
                      |||++++||+||+|+.|+|+++.       |++|+++|  .|.+++++.+++++..           +++       ...
T Consensus         1 RpL~~~~~f~r~~G~~v~v~l~~-------p~~g~k~f~G~L~~~~~~~i~l~~~~-----------~~~-------~~~   55 (74)
T d1ib8a1           1 RPLKTKDAVAGAVGKYIHVGLYQ-------AIDKQKVFEGTLLAFEEDELTMEYMD-----------KTR-------KKT   55 (74)
T ss_dssp             SCCSSHHHHHHHCSEEEEEECSS-------CSSSCSEEEEEEEEEETTEEEEEEEC-----------SSC-------EEE
T ss_pred             CCcCCHHHHHHhCCCEEEEEEec-------ccCCceEEEEEEEeecCCeEEEEEec-----------Ccc-------cEE
Confidence            89999999999999999999999       99999999  9999999999988641           111       115


Q ss_pred             eeecccccceeEEeec
Q 032340          126 LNTTFDSLRLVRLHSD  141 (142)
Q Consensus       126 ~~ip~~~I~karl~~~  141 (142)
                      ++|||++|++|||.++
T Consensus        56 ~~i~~~~I~kArL~ve   71 (74)
T d1ib8a1          56 VQIPYSLVSKARLAVK   71 (74)
T ss_dssp             EEECSSCCSSCEEECS
T ss_pred             EEEcHHHheeEEEEEE
Confidence            8999999999999986