Citrus Sinensis ID: 032374

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRVSSVLLQLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHccccccccccccccccccEEEEEEEEcccEEEEEEEEEEccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccEEEEcccccccccccccccccccEEEEEEEcccccHHHHHHccccccccccccccccccEEEEEEEccccEEEccEEEccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHc
Coil and Loop (DISEMBL)
mslnalvrlplsssrthedvlvkhspfssrttqkpngrerQRRVLVVQAkgkrglqarqfqrppppslpkieddgnprFVIFIRMANVYLwyplsiitggTTAKIMVAAKDNFlgkyiykdTLARNLAAVIYRVSSVLLQLI
Flexible Loop (DISEMBL)
mslnalvrlplsssrthedvlvkhspfssrttqkpngrerqrrVLVVqakgkrglqarqfqrppppslpkieddgnPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRVSSVLLQLI
Low Complexity Region (SEG)
MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRVSSVLLQLI
Disordered region (IsUnstruct)
****************************************************************************PRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRVSSVLLQ**
Disordered Region (DISOPRED)
****A***L********************************************************************RFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRVSSVLLQLI
Disordered Region (DISEMBL)
MSLNALVRLPLSSSRTHED*********************QRRVLVVQAKGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRVSSVLLQLI
Disordered Region (DISPRO)
****ALVRLPLSSSRTHEDVLVKHSPFSS**********RQRRVLVVQAKGKRGLQAR***RPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRVSSVLLQLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRVSSVLLQLI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
449450401	231	PREDICTED: uncharacterized protein LOC10	0.922	0.567	0.766	3e-52
449450403	228	PREDICTED: uncharacterized protein LOC10	0.922	0.574	0.766	4e-52
359473697	229	PREDICTED: uncharacterized protein LOC10	0.901	0.558	0.761	6e-52
255547908	233	oligopeptidase, putative [Ricinus commun	0.929	0.566	0.748	7e-52
297838515	985	F12A21.16 [Arabidopsis lyrata subsp. lyr	0.992	0.143	0.705	2e-50
30697554	230	uncharacterized protein [Arabidopsis tha	0.929	0.573	0.731	3e-50
334183724	229	uncharacterized protein [Arabidopsis tha	0.929	0.576	0.731	3e-50
30697556	231	uncharacterized protein [Arabidopsis tha	0.929	0.571	0.731	3e-50
351723561	239	uncharacterized protein LOC100306628 [Gl	0.936	0.556	0.719	6e-50
224107689	237	predicted protein [Populus trichocarpa]	0.922	0.552	0.725	5e-49

>gi|449450401|ref|XP_004142951.1| PREDICTED: uncharacterized protein LOC101203734 isoform 1 [Cucumis sativus] gi|449494502|ref|XP_004159563.1| PREDICTED: uncharacterized protein LOC101226204 isoform 1 [Cucumis sativus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 116/133 (87%), Gaps = 2/133 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQF 60
           MSLNALVRLPLS+S+  ED +V+HS FS+RT  KP+     RR L+V+AKGK+G+Q+R  
Sbjct: 5   MSLNALVRLPLSNSKLLEDGVVRHSLFSARTMHKPH--HTYRRPLLVEAKGKKGMQSRLS 62

Query: 61  QRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYK 120
           QRP PP LPKIEDDGNP+FVIFIRMANVYLWYPLS+I GGTTAKIMVAAKDNF+GKYIYK
Sbjct: 63  QRPGPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFVGKYIYK 122

Query: 121 DTLARNLAAVIYR 133
           DTLARNLAAVIYR
Sbjct: 123 DTLARNLAAVIYR 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450403|ref|XP_004142952.1| PREDICTED: uncharacterized protein LOC101203734 isoform 2 [Cucumis sativus] gi|449494506|ref|XP_004159564.1| PREDICTED: uncharacterized protein LOC101226204 isoform 2 [Cucumis sativus]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 116/133 (87%), Gaps = 2/133 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQF 60
           MSLNALVRLPLS+S+  ED +V+HS FS+RT  KP+     RR L+V+AKGK+G+Q+R  
Sbjct: 5   MSLNALVRLPLSNSKLLEDGVVRHSLFSARTMHKPH--HTYRRPLLVEAKGKKGMQSRLS 62

Query: 61  QRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYK 120
           QRP PP LPKIEDDGNP+FVIFIRMANVYLWYPLS+I GGTTAKIMVAAKDNF+GKYIYK
Sbjct: 63  QRPGPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSLINGGTTAKIMVAAKDNFVGKYIYK 122

Query: 121 DTLARNLAAVIYR 133
           DTLARNLAAVIYR
Sbjct: 123 DTLARNLAAVIYR 135

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473697|ref|XP_002272215.2| PREDICTED: uncharacterized protein LOC100256260 [Vitis vinifera]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 102/134 (76%), Positives = 116/134 (86%), Gaps = 6/134 (4%)

Query: 1   MSLNA-LVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           +SLNA LVR PLS+SR  ED  +KHS FS+RT  K     +++R LVV+AKGKRG+Q RQ
Sbjct: 6   LSLNAALVRTPLSNSRASEDGFIKHSIFSTRTVPKS----QKKRALVVEAKGKRGMQGRQ 61

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           FQR PPP LPKIEDDGNP+FVIFIRMANVYLWYPLS+ITGGTTAKIMVAAKDNFLGKYIY
Sbjct: 62  FQRQPPP-LPKIEDDGNPKFVIFIRMANVYLWYPLSLITGGTTAKIMVAAKDNFLGKYIY 120

Query: 120 KDTLARNLAAVIYR 133
           +DT+ARNLAAVIY+
Sbjct: 121 RDTIARNLAAVIYK 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547908|ref|XP_002515011.1| oligopeptidase, putative [Ricinus communis] gi|223546062|gb|EEF47565.1| oligopeptidase, putative [Ricinus communis]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/135 (74%), Positives = 117/135 (86%), Gaps = 3/135 (2%)

Query: 1   MSLNALVRLPLSSSR--THEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQAR 58
           +SLNALVRLPLS+S    HED + KH+ FS+RT       ++Q  +LVV+AKGKRG+Q+R
Sbjct: 5   LSLNALVRLPLSNSSRIHHEDGVAKHTLFSTRTVTLQKSLKKQT-LLVVKAKGKRGMQSR 63

Query: 59  QFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYI 118
           QFQRPP PSLPKIEDDGNP+F+IFIRMANVYLWYPLS++TGGTTAKIMVAAKDNFLGKYI
Sbjct: 64  QFQRPPAPSLPKIEDDGNPKFLIFIRMANVYLWYPLSLVTGGTTAKIMVAAKDNFLGKYI 123

Query: 119 YKDTLARNLAAVIYR 133
           YK+TL RNLAAVIYR
Sbjct: 124 YKNTLDRNLAAVIYR 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838515|ref|XP_002887139.1| F12A21.16 [Arabidopsis lyrata subsp. lyrata] gi|297332980|gb|EFH63398.1| F12A21.16 [Arabidopsis lyrata subsp. lyrata]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/146 (70%), Positives = 118/146 (80%), Gaps = 5/146 (3%)

Query: 1   MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           MSLNAL RLPL ++   E+V LV+ S FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct: 689 MSLNALTRLPLKNTGRFEEVGLVRQSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 748

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct: 749 YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 807

Query: 120 KDTLARNLAAVIYRV---SSVLLQLI 142
           KDT+ARN+AAVIYRV   S  L  LI
Sbjct: 808 KDTIARNIAAVIYRVNYTSCFLFGLI 833

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697554|ref|NP_850972.1| uncharacterized protein [Arabidopsis thaliana] gi|15215606|gb|AAK91348.1| At1g67700/F12A21_30 [Arabidopsis thaliana] gi|21435985|gb|AAM51570.1| At1g67700/F12A21_30 [Arabidopsis thaliana] gi|332196562|gb|AEE34683.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 113/134 (84%), Gaps = 2/134 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct: 5   MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct: 65  YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query: 120 KDTLARNLAAVIYR 133
           KDT+ARN+AAVIYR
Sbjct: 124 KDTIARNIAAVIYR 137

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183724|ref|NP_001185346.1| uncharacterized protein [Arabidopsis thaliana] gi|332196564|gb|AEE34685.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 113/134 (84%), Gaps = 2/134 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct: 5   MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct: 65  YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query: 120 KDTLARNLAAVIYR 133
           KDT+ARN+AAVIYR
Sbjct: 124 KDTIARNIAAVIYR 137

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697556|ref|NP_564903.3| uncharacterized protein [Arabidopsis thaliana] gi|21554073|gb|AAM63154.1| unknown [Arabidopsis thaliana] gi|222423377|dbj|BAH19661.1| AT1G67700 [Arabidopsis thaliana] gi|332196563|gb|AEE34684.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 113/134 (84%), Gaps = 2/134 (1%)

Query: 1   MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
           MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct: 5   MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query: 60  FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
           +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct: 65  YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query: 120 KDTLARNLAAVIYR 133
           KDT+ARN+AAVIYR
Sbjct: 124 KDTIARNIAAVIYR 137

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723561|ref|NP_001237795.1| uncharacterized protein LOC100306628 [Glycine max] gi|255629119|gb|ACU14904.1| unknown [Glycine max]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/139 (71%), Positives = 117/139 (84%), Gaps = 6/139 (4%)

Query: 1   MSLNALVRLPLSSSRTHED---VLVKHSPFSSRTTQKPNGRER---QRRVLVVQAKGKRG 54
           MSLNALVRLPLS+SR H+D   ++++HS FSSR  Q+     +   + +V VV+AKGK+G
Sbjct: 5   MSLNALVRLPLSNSRFHDDAAPMIIRHSLFSSRKQQQQQQSYKVPQRHQVFVVEAKGKKG 64

Query: 55  LQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFL 114
           + +RQFQR  PP LPKIEDDGNP+FVIFIRMANVYLWYPLSI++GGTTAKIMVAAKDNFL
Sbjct: 65  MMSRQFQRNAPPPLPKIEDDGNPKFVIFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFL 124

Query: 115 GKYIYKDTLARNLAAVIYR 133
           GKYIYKDTL RNLAAVIYR
Sbjct: 125 GKYIYKDTLDRNLAAVIYR 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107689|ref|XP_002314565.1| predicted protein [Populus trichocarpa] gi|118487840|gb|ABK95743.1| unknown [Populus trichocarpa] gi|222863605|gb|EEF00736.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 118/142 (83%), Gaps = 11/142 (7%)

Query: 1   MSLNALVRLPLSSSRT---HEDV--LVKHSPFSSRTTQ---KPNGRERQRRVLVVQAKGK 52
           MSLNALVRLP  SSRT   HED   L+KH+ FS+R +     P  + +   +LVV+AKGK
Sbjct: 5   MSLNALVRLP--SSRTMLLHEDGGGLLKHTLFSTRKSTAQTSPKKQGQGHMLLVVKAKGK 62

Query: 53  RGLQARQFQRPPPP-SLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKD 111
           +G+Q RQFQRPPP  SLPKIEDDGNP+F+IFIR+ANVYLWYPLS+ITGGTTAKIMVAAKD
Sbjct: 63  KGMQTRQFQRPPPTLSLPKIEDDGNPKFLIFIRVANVYLWYPLSLITGGTTAKIMVAAKD 122

Query: 112 NFLGKYIYKDTLARNLAAVIYR 133
           NFLGKYIYKDTLARNLAAVIY+
Sbjct: 123 NFLGKYIYKDTLARNLAAVIYK 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2008615	231	AT1G67700 "AT1G67700" [Arabido	0.929	0.571	0.731	3.3e-47

TAIR|locus:2008615 AT1G67700 "AT1G67700" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 98/134 (73%), Positives = 113/134 (84%)

Query:     1 MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
             MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct:     5 MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query:    60 FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
             +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct:    65 YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query:   120 KDTLARNLAAVIYR 133
             KDT+ARN+AAVIYR
Sbjct:   124 KDTIARNIAAVIYR 137


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       142   0.00091  102 3  11 22  0.40    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  529 (56 KB)
  Total size of DFA:  115 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.59u 0.10s 15.69t   Elapsed:  00:00:00
  Total cpu time:  15.59u 0.10s 15.69t   Elapsed:  00:00:00
  Start:  Sat May 11 02:58:12 2013   End:  Sat May 11 02:58:12 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00035114001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (226 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020753001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (448 aa)				•					0.458
	GSVIVG00033192001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (410 aa)				•					0.455
	GSVIVG00002992001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)				•					0.455
	GSVIVG00010970001	RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (408 aa)				•					0.454
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)				•					0.451
	GSVIVG00036212001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (397 aa)				•					0.448
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.441
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.441
	GSVIVG00037228001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (221 aa)				•					0.440
	GSVIVG00015908001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (324 aa)				•					0.437

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00