Citrus Sinensis ID: 032392

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
cEEEcccHHHHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHcccEEEEcccccccccccccccc
ccccccHHHHHHHHHHHcccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHcccEEEEEHHHcccccccccccc
mvegvgneKIANHLDKAVSNLGRKPLKVLVQVNTsgeesksgidpssclgivehvrlrcpnlefsglmtigmpdytstpeNFRTLLNCRAEVCKALGmaedqcelsmgmsgDFEQAIEMGSTsvrigstifgpreyakkqqn
mvegvgnekiaNHLDkavsnlgrkpLKVLVQVNtsgeesksgidpsscLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRigstifgpreyakkqqn
MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
**************************KVLV****************SCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSM******************I***I************
MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIF***********
MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN***********PSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
*VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPRE*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query142 2.2.26 [Sep-21-2011]
O94903275 Proline synthase co-trans yes no 0.957 0.494 0.554 4e-36
Q9Z2Y8274 Proline synthase co-trans yes no 0.978 0.507 0.524 6e-35
Q5R4Z1275 Proline synthase co-trans yes no 0.978 0.505 0.531 2e-34
Q3T0G5273 Proline synthase co-trans yes no 0.978 0.509 0.517 8e-34
Q1ZXI6255 Proline synthase co-trans yes no 0.985 0.549 0.464 7e-28
P52057244 Proline synthase co-trans yes no 0.971 0.565 0.482 1e-26
Q9KUQ4236 UPF0001 protein VC_0461 O yes no 0.929 0.559 0.453 1e-22
P52055233 UPF0001 protein in pilT-p N/A no 0.922 0.562 0.435 1e-19
Q9CPD5233 UPF0001 protein PM0112 OS yes no 0.950 0.579 0.378 4e-18
P44506237 UPF0001 protein HI_0090 O yes no 0.908 0.544 0.417 2e-17
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1 Back     alignment and function desciption
 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 103/146 (70%), Gaps = 10/146 (6%)

Query: 1   MVEGVGNEKIANHLDKAVSNLGRK----PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR 56
           M+E V + K+A   DK  S+  RK     LKV+VQ+NTSGEESK G+ PS  + IVEH+ 
Sbjct: 113 MLETVDSVKLA---DKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHIN 169

Query: 57  LRCPNLEFSGLMTIGM--PDYTSTPE-NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDF 113
            +CPNLEF GLMTIG    D +  P  +F+ LL+ R E+CK L +  DQ ELSMGMS DF
Sbjct: 170 AKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADF 229

Query: 114 EQAIEMGSTSVRIGSTIFGPREYAKK 139
           + A+E+GST+VRIGSTIFG R+Y+KK
Sbjct: 230 QHAVEVGSTNVRIGSTIFGERDYSKK 255

Homo sapiens (taxid: 9606)
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1 Back     alignment and function description
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1 Back     alignment and function description
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1 Back     alignment and function description
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2 Back     alignment and function description
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1 Back     alignment and function description
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1 Back     alignment and function description
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1 Back     alignment and function description
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70) GN=PM0112 PE=3 SV=1 Back     alignment and function description
>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query142
147861921 245 hypothetical protein VITISV_024616 [Viti 1.0 0.579 0.823 6e-64
225460901 245 PREDICTED: proline synthase co-transcrib 1.0 0.579 0.823 6e-64
255577143 245 proline synthetase associated protein, p 1.0 0.579 0.816 7e-64
449503195 245 PREDICTED: proline synthase co-transcrib 1.0 0.579 0.809 3e-63
449463228 245 PREDICTED: proline synthase co-transcrib 1.0 0.579 0.809 3e-63
240256085 244 putative pyridoxal phosphate-dependent e 0.978 0.569 0.820 3e-61
356527075 244 PREDICTED: proline synthase co-transcrib 0.985 0.573 0.792 3e-61
356567318 244 PREDICTED: proline synthase co-transcrib 0.985 0.573 0.807 4e-61
357126794 249 PREDICTED: proline synthase co-transcrib 1.0 0.570 0.774 3e-60
297799306 244 AT4g26860/F10M23_200 [Arabidopsis lyrata 0.978 0.569 0.805 3e-60
>gi|147861921|emb|CAN80917.1| hypothetical protein VITISV_024616 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 129/142 (90%)

Query: 1   MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCP 60
           MVEGV NEKIAN LD+ VS + RKPLKVLVQVNTSGE SKSG++PS C+ + +HV+L CP
Sbjct: 104 MVEGVDNEKIANQLDRVVSGIRRKPLKVLVQVNTSGEVSKSGVEPSGCVELAKHVKLGCP 163

Query: 61  NLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMG 120
           NLEFSGLMTIGMPDY+STPENFR LLNCR EVCKALGMAE+QCELSMGMSGDFEQAIEMG
Sbjct: 164 NLEFSGLMTIGMPDYSSTPENFRRLLNCRIEVCKALGMAEEQCELSMGMSGDFEQAIEMG 223

Query: 121 STSVRIGSTIFGPREYAKKQQN 142
           ST+VRIGSTIFGPREY KK+QN
Sbjct: 224 STNVRIGSTIFGPREYPKKEQN 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225460901|ref|XP_002278892.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein [Vitis vinifera] gi|297737470|emb|CBI26671.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577143|ref|XP_002529455.1| proline synthetase associated protein, putative [Ricinus communis] gi|223531071|gb|EEF32921.1| proline synthetase associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449503195|ref|XP_004161881.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463228|ref|XP_004149336.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240256085|ref|NP_567760.4| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] gi|14030629|gb|AAK52989.1|AF375405_1 AT4g26860/F10M23_200 [Arabidopsis thaliana] gi|17978899|gb|AAL47419.1| AT4g26860/F10M23_200 [Arabidopsis thaliana] gi|21536981|gb|AAM61322.1| putative proline synthetase associated protein [Arabidopsis thaliana] gi|332659861|gb|AEE85261.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356527075|ref|XP_003532139.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356567318|ref|XP_003551868.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Glycine max] Back     alignment and taxonomy information
>gi|357126794|ref|XP_003565072.1| PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|297799306|ref|XP_002867537.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata] gi|297313373|gb|EFH43796.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query142
TAIR|locus:2008910257 AT1G11930 [Arabidopsis thalian 0.971 0.536 0.721 1.1e-50
UNIPROTKB|Q0DKP7214 Os05g0150000 "Os05g0150000 pro 0.816 0.542 0.732 5.7e-43
UNIPROTKB|A8HP79251 CHLREDRAFT_116897 "Predicted p 0.978 0.553 0.581 7.8e-39
UNIPROTKB|O94903275 PROSC "Proline synthase co-tra 0.978 0.505 0.538 2.2e-34
MGI|MGI:1891207274 Prosc "proline synthetase co-t 0.978 0.507 0.524 2.5e-33
RGD|1308962275 Prosc "proline synthetase co-t 0.978 0.505 0.503 1.1e-32
UNIPROTKB|F1RX84275 PROSC "Uncharacterized protein 0.978 0.505 0.531 2.3e-32
UNIPROTKB|Q3T0G5273 PROSC "Proline synthase co-tra 0.978 0.509 0.517 2.9e-32
UNIPROTKB|E1C516276 PROSC "Uncharacterized protein 0.978 0.503 0.510 1.8e-30
DICTYBASE|DDB_G0278713255 prosc "alanine racemase N-term 0.985 0.549 0.477 7.1e-29
TAIR|locus:2008910 AT1G11930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 101/140 (72%), Positives = 117/140 (83%)

Query:     2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN 61
             VE V +EKIAN LD+ V N+GRKPLKV VQVNTSGE+SK G++PS C+G+ +HV+  C N
Sbjct:   118 VESVDDEKIANMLDRVVGNIGRKPLKVFVQVNTSGEDSKFGVEPSGCVGLAKHVKEACSN 177

Query:    62 LEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA--IEM 119
             LEFSGLMTIGM DYTSTPENF+ L  CR+EVCK LG+ E+QCELSMGMSGDFE A  IE+
Sbjct:   178 LEFSGLMTIGMADYTSTPENFKLLAKCRSEVCKELGIPEEQCELSMGMSGDFELALQIEL 237

Query:   120 GSTSVRIGSTIFGPREYAKK 139
             GST+VRIGSTIFG REY KK
Sbjct:   238 GSTNVRIGSTIFGAREYPKK 257
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IBA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
UNIPROTKB|Q0DKP7 Os05g0150000 "Os05g0150000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8HP79 CHLREDRAFT_116897 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|O94903 PROSC "Proline synthase co-transcribed bacterial homolog protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1891207 Prosc "proline synthetase co-transcribed" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308962 Prosc "proline synthetase co-transcribed homolog (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RX84 PROSC "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0G5 PROSC "Proline synthase co-transcribed bacterial homolog protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C516 PROSC "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278713 prosc "alanine racemase N-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027282001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (245 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000690001
RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)
•       0.780
GSVIVG00032279001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (162 aa)
•     • 0.579
GSVIVG00034871001
SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_73, whole genome shotg [...] (128 aa)
•       0.531
GSVIVG00027244001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (424 aa)
•     • 0.481
GSVIVG00010463001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (473 aa)
•     • 0.477
GSVIVG00026904001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (363 aa)
•     • 0.467
GSVIVG00019784001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (925 aa)
•     • 0.458
GSVIVG00032399001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (228 aa)
•     • 0.435
GSVIVG00015501001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (385 aa)
•       0.432
GSVIVG00000431001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (510 aa)
•       0.432

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
cd06822227 cd06822, PLPDE_III_YBL036c_euk, Pyridoxal 5-phosph 8e-77
cd00635222 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxa 2e-44
COG0325228 COG0325, COG0325, Predicted enzyme with a TIM-barr 7e-42
cd06824224 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphat 1e-35
TIGR00044229 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, 4e-30
pfam01168217 pfam01168, Ala_racemase_N, Alanine racemase, N-ter 4e-27
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 1e-09
COG3457 353 COG3457, COG3457, Predicted amino acid racemase [A 8e-04
>gnl|CDD|143496 cd06822, PLPDE_III_YBL036c_euk, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information 
 Score =  227 bits (580), Expect = 8e-77
 Identities = 80/136 (58%), Positives = 102/136 (75%), Gaps = 4/136 (2%)

Query: 1   MVEGVGNEKIANHLDKAVSNLG-RKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRC 59
           MVE V +EK+A+ L+KA   LG R+PLKV+VQVNTSGEESKSG++PS  + +V+H+   C
Sbjct: 92  MVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEEC 151

Query: 60  PNLEFSGLMTIGMPDYT---STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQA 116
           PNL+FSGLMTIG   Y+       +F  L++CR +VC+ LG+  D  ELSMGMS DFE A
Sbjct: 152 PNLKFSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSADFEHA 211

Query: 117 IEMGSTSVRIGSTIFG 132
           IEMGST+VR+GS IFG
Sbjct: 212 IEMGSTNVRVGSAIFG 227

This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog). Length = 227
>gnl|CDD|143483 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>gnl|CDD|223402 COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>gnl|CDD|143497 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>gnl|CDD|129155 TIGR00044, TIGR00044, pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>gnl|CDD|216340 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|225988 COG3457, COG3457, Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 142
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 100.0
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 100.0
KOG3157244 consensus Proline synthetase co-transcribed protei 100.0
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 99.98
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 99.97
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 99.96
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.96
cd06821 361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 99.93
TIGR00492 367 alr alanine racemase. This enzyme interconverts L- 99.92
cd06815 353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 99.91
cd06820 353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 99.91
cd00430 367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 99.9
cd07376 345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 99.9
PRK00053 363 alr alanine racemase; Reviewed 99.89
cd06814 379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 99.89
PRK13340 406 alanine racemase; Reviewed 99.89
cd06826 365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 99.89
cd06817 389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 99.89
cd06825 368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 99.87
cd06811 382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.87
cd06819 358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.86
PRK03646 355 dadX alanine racemase; Reviewed 99.86
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.85
cd06827 354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 99.83
cd06818 382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.83
cd06812 374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.83
PRK11930 822 putative bifunctional UDP-N-acetylmuramoyl-tripept 99.83
COG0787 360 Alr Alanine racemase [Cell envelope biogenesis, ou 99.82
cd06813 388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.79
COG3616 368 Predicted amino acid aldolase or racemase [Amino a 99.63
cd06839 382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 99.51
cd06810 368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 99.5
cd06828 373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 99.46
cd06842 423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 99.44
PLN02537 410 diaminopimelate decarboxylase 99.42
TIGR01048 417 lysA diaminopimelate decarboxylase. This family co 99.41
COG3457 353 Predicted amino acid racemase [Amino acid transpor 99.39
cd06843 377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 99.38
cd06841 379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 99.33
TIGR03099 398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 99.32
cd06830 409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 99.12
COG0019 394 LysA Diaminopimelate decarboxylase [Amino acid tra 99.08
cd00622 362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 99.06
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 98.97
PRK05354 634 arginine decarboxylase; Provisional 98.84
PLN02439 559 arginine decarboxylase 98.83
TIGR01273 624 speA arginine decarboxylase, biosynthetic. A disti 98.81
PRK11165 420 diaminopimelate decarboxylase; Provisional 98.73
cd06836 379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 98.67
cd06831 394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 98.52
TIGR01047 380 nspC carboxynorspermidine decarboxylase. This prot 98.42
cd06840 368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 98.42
PRK08961 861 bifunctional aspartate kinase/diaminopimelate deca 98.13
KOG0622 448 consensus Ornithine decarboxylase [Amino acid tran 97.88
cd06829 346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 97.78
COG1166 652 SpeA Arginine decarboxylase (spermidine biosynthes 94.7
PRK08091228 ribulose-phosphate 3-epimerase; Validated 92.77
COG0167310 PyrD Dihydroorotate dehydrogenase [Nucleotide tran 91.99
COG0036220 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate 89.17
cd06533171 Glyco_transf_WecG_TagA The glycosyltransferase Wec 87.7
cd02803327 OYE_like_FMN_family Old yellow enzyme (OYE)-like F 87.03
PF07476248 MAAL_C: Methylaspartate ammonia-lyase C-terminus; 86.25
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 85.26
TIGR00696177 wecB_tagA_cpsF bacterial polymer biosynthesis prot 85.23
PRK14057254 epimerase; Provisional 84.38
KOG3111224 consensus D-ribulose-5-phosphate 3-epimerase [Carb 83.63
cd02932336 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN 83.34
cd04733338 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN 83.06
cd02930353 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin 82.06
cd04734343 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN 81.61
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 81.08
COG0386162 BtuE Glutathione peroxidase [Posttranslational mod 80.17
cd02929370 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) 80.04
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-36  Score=227.23  Aligned_cols=131  Identities=44%  Similarity=0.595  Sum_probs=121.3

Q ss_pred             CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC--c
Q 032392            1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--T   78 (142)
Q Consensus         1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--~   78 (142)
                      |+||||+++.|++|++.+.+.+ ++++|+||||++.+.+|.|++|+++.+++..+. .+|+|+++||||+++.+.++  .
T Consensus        96 ~ihSlDr~klA~~l~kra~~~~-~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~l~GLM~ipp~~~d~~~~  173 (228)
T COG0325          96 WIHSLDRLKLAKELNKRALELP-KPLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLELRGLMTIPPLTDDPEEI  173 (228)
T ss_pred             eeeecCHHHHHHHHHHHHHhCC-CCceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCeEeEEEeeCCCCCCHHHH
Confidence            7999999999999999888876 799999999999999999999999999999999 99999999999999984333  4


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcc
Q 032392           79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY  136 (142)
Q Consensus        79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~  136 (142)
                      ..+|+.+..+++.+++. +.+  +.+||||||+||++|+++|+|+||+||.|||.|+|
T Consensus       174 ~~~F~~l~~l~~~l~~~-~~~--~~~LSMGMS~D~e~AI~~GaT~VRIGtaiFg~r~~  228 (228)
T COG0325         174 FAVFRKLRKLFDELKAK-YPP--IDELSMGMSNDYEIAIAEGATMVRIGTAIFGARDY  228 (228)
T ss_pred             HHHHHHHHHHHHHHHHh-cCC--CCeecCcCcccHHHHHHcCCCEEEEcHHhhCCCCC
Confidence            58999999999999988 433  89999999999999999999999999999999987

>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins Back     alignment and domain information
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain Back     alignment and domain information
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 Back     alignment and domain information
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain Back     alignment and domain information
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
3r79_A244 Crystal Structure Of An Uncharactertized Protein Fr 2e-14
3cpg_A282 Crystal Structure Of An Unknown Protein From Bifido 2e-14
1w8g_A234 Crystal Structure Of E. Coli K-12 Yggs Length = 234 7e-14
1b54_A257 Crystal Structure Of A Yeast Hypothetical Protein-A 4e-13
3sy1_A245 Crystal Structure Of Engineered Protein. Northeast 4e-11
1ct5_A256 Crystal Structure Of Yeast Hypothetical Protein Ybl 7e-11
>pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From Agrobacterium Tumefaciens Length = 244 Back     alignment and structure 
Iteration: 1

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 1   MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR--LR 58
           +VE +  EKIA  L +  +  GR  L+  VQVNT  E  K+GIDP   +  V   R  L+
Sbjct: 100 VVESIDREKIARALSEECARQGRS-LRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELK 158
Query: 59  CPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 118
            P     GL  I  P     P     LL   A  C   G+ +    LS G SGDFE A+E
Sbjct: 159 LP---VEGLXCI--PPAEENPGPHFALLAKLAGQC---GLEK----LSXGXSGDFETAVE 206
Query: 119 MGSTSVRIGSTIFGPR 134
            G+TSVR+GS IFG R
Sbjct: 207 FGATSVRVGSAIFGSR 222
>pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From Bifidobacterium Adolescentis Length = 282 Back     alignment and structure
>pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs Length = 234 Back     alignment and structure
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A Structure From Bnl's Human Proteome Project Length = 257 Back     alignment and structure
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or70 Length = 245 Back     alignment and structure
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-Selenomet Crystal Length = 256 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 3e-56
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 6e-55
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 3e-53
3r79_A244 Uncharacterized protein; PSI-biology, structural g 1e-44
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Length = 256 Back     alignment and structure
 Score =  175 bits (445), Expect = 3e-56
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 11/149 (7%)

Query: 1   MVEGVGNEKIANHLDK--AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLG-IVEHVRL 57
            VE + + K A  L++  A       P+   VQ+NTS E+ KSG++  + +  +++    
Sbjct: 109 SVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLS 168

Query: 58  R-CPNLEFSGLMTIGMPDYTSTP----ENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD 112
             C  ++ +GLMTIG  + +        +F TL+  + ++    G      +LSMGMS D
Sbjct: 169 EECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFG---TSLKLSMGMSAD 225

Query: 113 FEQAIEMGSTSVRIGSTIFGPREYAKKQQ 141
           F +AI  G+  VRIG+ IFG R    + +
Sbjct: 226 FREAIRQGTAEVRIGTDIFGARPPKNEAR 254
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Length = 245 Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Length = 282 Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Length = 244 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query142
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 100.0
3r79_A244 Uncharacterized protein; PSI-biology, structural g 100.0
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 100.0
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 99.97
3gwq_A 426 D-serine deaminase; structural genomics, joint cen 99.95
1vfs_A 386 Alanine racemase; TIM-barrel, greek-KEY motief, is 99.93
1xfc_A 384 Alanine racemase; alpha-beta barrel, beta-structur 99.93
4ecl_A 374 Serine racemase, vantg; antibiotic resistance, van 99.92
3llx_A 376 Predicted amino acid aldolase or racemase; structu 99.91
2vd8_A 391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 99.91
3e5p_A 371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 99.9
4a3q_A 382 Alanine racemase 1; isomerase, PLP-dependent enzym 99.9
2dy3_A 361 Alanine racemase; alpha/beta barrel, isomerase; HE 99.9
1bd0_A 388 Alanine racemase; isomerase, pyridoxal phosphate, 99.9
3mub_A 367 Alanine racemase; alpha/beta barrel, extended beta 99.89
3kw3_A 376 Alanine racemase; niaid, ssgcid, seattle structura 99.89
1rcq_A 357 Catabolic alanine racemase DADX; alpha-beta barrel 99.88
2rjg_A 379 Alanine racemase; alpha/beta barrel, cell shape, c 99.88
3anu_A 376 D-serine dehydratase; PLP-dependent fold-type III 99.87
3co8_A 380 Alanine racemase; protein structure initiative II, 99.86
3hur_A 395 Alanine racemase; structural genomics, isomerase, 99.85
2p3e_A 420 Diaminopimelate decarboxylase; southeast collabora 99.79
2j66_A 428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 99.64
2qgh_A 425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 99.64
1twi_A 434 Diaminopimelate decarboxylase; antibiotic resistan 99.62
3vab_A 443 Diaminopimelate decarboxylase 1; structural genomi 99.56
3n2b_A 441 Diaminopimelate decarboxylase; LYSA, lyase, struct 99.55
2o0t_A 467 Diaminopimelate decarboxylase; PLP binding enzyme, 99.53
2plj_A 419 Lysine/ornithine decarboxylase; type IV decarboxyl 99.47
2nva_A 372 Arginine decarboxylase, A207R protein; PLP, TIM ba 99.4
3btn_A 448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 99.37
1f3t_A 425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 99.33
2oo0_A 471 ODC, ornithine decarboxylase; beta-alpha barrel, s 99.32
7odc_A 424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 99.28
3n2o_A 648 ADC, biosynthetic arginine decarboxylase; lyase; H 99.24
3nzq_A 666 ADC, biosynthetic arginine decarboxylase; alpha-be 99.24
3nzp_A 619 Arginine decarboxylase; alpha-beta protein, struct 99.21
2yxx_A 386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 99.15
1knw_A 425 Diaminopimelate decarboxylase; pyridoxal-phosphate 99.09
3n29_A 418 Carboxynorspermidine decarboxylase; lyase; HET: PL 98.06
3mt1_A 365 Putative carboxynorspermidine decarboxylase prote; 98.0
3kru_A343 NADH:flavin oxidoreductase/NADH oxidase; homotetra 83.05
3hgj_A349 Chromate reductase; TIM barrel, oxidoreductase; HE 80.71
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
Probab=100.00  E-value=1e-36  Score=235.51  Aligned_cols=133  Identities=34%  Similarity=0.421  Sum_probs=118.3

Q ss_pred             CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC--c
Q 032392            1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--T   78 (142)
Q Consensus         1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--~   78 (142)
                      +++||||++.+++|++.+.+.+ ++++|+|+||||.+|+|+|++++++.++++.+. .+|+|+++|||||+++.+++  .
T Consensus       100 ~i~sVds~~~a~~l~~~a~~~~-~~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~~l~l~Glmt~~~~~~d~~~~  177 (245)
T 3sy1_A          100 WCITIDRLRIATRLNDQRPAEL-PPLNVLIQINISDENSKSGIQLAELDELAAAVA-ELPRLRLRGLSAIPAPESEYVRQ  177 (245)
T ss_dssp             EEEEECCHHHHHHHHHHSCTTS-CCEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCTTEEEEEEECCCCCCSCHHHH
T ss_pred             EEEecCCHHHHHHHHHHHHHcC-CCceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCCCCeEEEEEEeCCCCCCHHHH
Confidence            5799999999999999999888 899999999999999999999999999999999 99999999999999983333  4


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcccc
Q 032392           79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK  138 (142)
Q Consensus        79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~~  138 (142)
                      ...|+++.++++.|++. +..  +++||||||+||+.|+++|+|+||+||+|||+|+|.+
T Consensus       178 ~~~f~~l~~l~~~l~~~-~~~--~~~LSmGmS~d~~~Ai~~G~t~vRvGt~iFg~r~y~~  234 (245)
T 3sy1_A          178 FEVARQMAVAFAGLKTR-YPH--IDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSK  234 (245)
T ss_dssp             HHHHHHHHHHHHHHHTT-STT--CCEEECCCSTTHHHHHHHTCCEEEESHHHHCC-----
T ss_pred             HHHHHHHHHHHHHHHHh-CCC--CCEEeccCcHhHHHHHHcCCCEEECchHHhCCCCCCC
Confidence            58999999999999887 444  7999999999999999999999999999999999975
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* Back     alignment and structure
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 142
d1ct5a_244 c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker 4e-22
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: "Hypothetical" protein ybl036c
domain: "Hypothetical" protein ybl036c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.7 bits (211), Expect = 4e-22
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 9/114 (7%)

Query: 25  PLKVLVQVNTSGEESKSGIDPSSCLG--IVEHVRLRCPNLEFSGLMTIGMPDYTSTPE-- 80
           P+   VQ+NTS E+ KSG++  + +   I   +   C  ++ +GLMTIG  + +      
Sbjct: 134 PILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKE 193

Query: 81  --NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG 132
             +F TL+  + ++    G      +LSMGMS DF +AI  G+  VRIG+ IFG
Sbjct: 194 NRDFATLVEWKKKIDAKFG---TSLKLSMGMSADFREAIRQGTAEVRIGTDIFG 244

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query142
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 99.96
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 99.93
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 99.87
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 99.86
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 98.81
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 98.73
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 98.62
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 98.49
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 98.48
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: "Hypothetical" protein ybl036c
domain: "Hypothetical" protein ybl036c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.1e-29  Score=194.07  Aligned_cols=129  Identities=34%  Similarity=0.580  Sum_probs=108.5

Q ss_pred             CeEecCCHHHHHHHHHHHHhcC--CCCceEEEEEeCCCCCCccCCChh-hHHHHHHHHH-ccCCCeeEeeEeeecCCC--
Q 032392            1 MVEGVGNEKIANHLDKAVSNLG--RKPLKVLVQVNTSGEESKSGIDPS-SCLGIVEHVR-LRCPNLEFSGLMTIGMPD--   74 (142)
Q Consensus         1 ~i~svds~~~~~~l~~~a~~~~--~~~~~v~I~v~tg~~~~R~G~~~~-~~~~l~~~i~-~~~~~l~l~Gl~th~~~~--   74 (142)
                      |||||||++.+..|++.+.+.+  ..++.|+||||++.+.+|.|+.++ ++.++++.+. ..+++|++.||||+++..  
T Consensus       108 ~I~svds~kla~~l~~~~~~~~~~~~~~~~~iQVNi~~e~~KsG~~~~~~l~~~~~~~~~~~~~~l~l~GLM~i~p~~~~  187 (244)
T d1ct5a_         108 SVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVS  187 (244)
T ss_dssp             EEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTTCCSEEEEEEECCCCCC--
T ss_pred             cccccccccchhHHHHHHhhhhcccCcceeEEeeecccccccCCCCcHHHHHHHHHHHHHHhcccchhccccccccCCCC
Confidence            5899999999999999887643  136889999999999999999875 6788888773 168999999999999862  


Q ss_pred             C--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccC
Q 032392           75 Y--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFG  132 (142)
Q Consensus        75 ~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg  132 (142)
                      .  ......|+.+..+++.+++.++.   ...||||||+||++|+++|+|+||+|+.|||
T Consensus       188 ~~~~~~~~~F~~l~~l~~~l~~~~~~---~~~LSMGMS~Dye~AI~~GsT~VRIGs~iFG  244 (244)
T d1ct5a_         188 HEDSKENRDFATLVEWKKKIDAKFGT---SLKLSMGMSADFREAIRQGTAEVRIGTDIFG  244 (244)
T ss_dssp             -------HHHHHHHHHHHHHHHHHCC---CCEEECCCTTTHHHHHHTTCSEEEESHHHHC
T ss_pred             chhhHHHHHHHHHHHHHHHHhccCCC---CCEEeChhhhhHHHHHHCCCCEEEcCchhcC
Confidence            2  22346899999999999988653   5689999999999999999999999999998
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure