Citrus Sinensis ID: 032406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVAMLGR
Secondary Structure (PSIPRED)
cccEEEEEEEEccccEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEccEEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccEEcHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccEEEEEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccEEEEcc
Coil and Loop (DISEMBL)
MAAIYSLYIINKSGGLifykdygsagrmdtndSLRVASLWHSMHAIsqqlspttgcsgielleadtfdlhcfqsltgtkffvvcepgtqHMESLLKVIYELYTDYvlknpfyemempircelfdiNLSQAVQKDRVAMLGR
Flexible Loop (DISEMBL)
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVAMLGR
Low Complexity Region (SEG)
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVAMLGR
Disordered region (IsUnstruct)
**AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAV**********
Disordered Region (DISOPRED)
MAAIYSLYIINKSGGLIFY****************VASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVAM***
Disordered Region (DISEMBL)
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVAMLGR
Disordered Region (DISPRO)
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVAMLGR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVAMLGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q54UU1	135	Trafficking protein parti	yes	no	0.900	0.940	0.523	3e-36
Q2TBL9	219	Trafficking protein parti	yes	no	0.751	0.484	0.584	1e-33
Q9ES56	219	Trafficking protein parti	yes	no	0.751	0.484	0.584	1e-33
Q69BT7	219	Trafficking protein parti	yes	no	0.751	0.484	0.584	1e-33
Q5R9J9	219	Trafficking protein parti	yes	no	0.751	0.484	0.575	3e-33
Q9Y296	219	Trafficking protein parti	yes	no	0.751	0.484	0.575	3e-33
O43041	132	Transport protein particl	yes	no	0.907	0.969	0.480	3e-30
Q557G3	142	Trafficking protein parti	no	no	0.851	0.845	0.28	4e-11
Q03784	219	Trafficking protein parti	yes	no	0.539	0.347	0.33	3e-08
Q2KMM2	145	Trafficking protein parti	no	no	0.921	0.896	0.223	7e-05

>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 94/128 (73%), Gaps = 1/128 (0%)

Query: 3   AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCS-GIEL 61
            I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP +G S GIE+
Sbjct: 2   TINSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEV 61

Query: 62  LEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCE 121
           +E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELYTDYVLKNPFYE+EM IRC+
Sbjct: 62  IETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCD 121

Query: 122 LFDINLSQ 129
           LFD  L++
Sbjct: 122 LFDYKLNR 129

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Dictyostelium discoideum (taxid: 44689)

>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
               ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
               ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi. May play a role in dendrite postsynaptic membrane trafficking.

Mus musculus (taxid: 10090)

>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
               ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 82/106 (77%)

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
               ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Pongo abelii (taxid: 9601)

>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 82/106 (77%)

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
               ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 89/129 (68%), Gaps = 1/129 (0%)

Query: 4   IYSLYIINKSGGLIFYKDYGSAGR-MDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELL 62
           +++L IIN++G LIF +++GS+   +  N+ L +A   H +HAIS Q+SP  G SGI+LL
Sbjct: 1   MHALIIINRAGSLIFQREFGSSPTALTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLL 60

Query: 63  EADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCEL 122
           EA TF++H  Q+ TG KF +  E  T +    L+  YELY+DYVLKNPFY +EMPI+C+L
Sbjct: 61  EAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQL 120

Query: 123 FDINLSQAV 131
           FD  L + +
Sbjct: 121 FDEQLKRYI 129

TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 4   IYSLYIINKSGGLIFYKDYGSA--GRMDTNDSLRVASLWHSMHAISQQLSPTT--GCSGI 59
           IY++YI NK G  I+Y+D+      +  + D   +  + +S+ A     SP      +G 
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKIDDKTGF 61

Query: 60  ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIY-ELYTDYVLKNPFYEMEMPI 118
              +  T+ LH +++L+  KF ++ +P    +   LK IY +++ +YV+KNP Y+    +
Sbjct: 62  HCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGTTV 121

Query: 119 RCELF 123
           +C+ F
Sbjct: 122 KCDTF 126

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 24/100 (24%)

Query: 57  SGIELLEADTFDLHCFQSLTGTKFFVVC-------EP-----------------GTQHME 92
           SG+  L  D F +  +Q+LTG KF  +        +P                   Q  +
Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176

Query: 93  SLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
           + L+ +Y LY+DYV+K+P Y MEMPIR  LFD  + + V+
Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 3   AIYSLYIINKSGGLIFYKDY---GSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGI 59
            +++LY+ +++G  + Y ++     AG     +   +  +  S+ +   ++SP     G 
Sbjct: 2   TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGF 61

Query: 60  ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYEMEMPI 118
              +   + LH +++ TG K  +  + G   +  +L  IY  LY ++V+KNP   +   +
Sbjct: 62  LSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTV 121

Query: 119 RCELFDINLSQAVQ 132
           + ELF   L   V+
Sbjct: 122 QSELFRSRLDSYVR 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
225450514	141	PREDICTED: trafficking protein particle	1.0	1.0	0.971	1e-76
224105981	141	predicted protein [Populus trichocarpa]	1.0	1.0	0.957	8e-76
449453994	141	PREDICTED: trafficking protein particle	1.0	1.0	0.950	1e-75
357521045	213	Trafficking protein particle complex sub	1.0	0.661	0.914	8e-75
388508168	141	unknown [Medicago truncatula]	1.0	1.0	0.914	5e-74
255587546	141	synbindin, putative [Ricinus communis] g	1.0	1.0	0.921	9e-74
388507408	141	unknown [Lotus japonicus]	1.0	1.0	0.907	9e-73
351722144	141	uncharacterized protein LOC100305989 [Gl	1.0	1.0	0.907	9e-72
357491479	141	Trafficking protein particle complex sub	1.0	1.0	0.886	1e-71
15241747	141	SNARE-like superfamily protein [Arabidop	1.0	1.0	0.907	3e-71

>gi|225450514|ref|XP_002281149.1| PREDICTED: trafficking protein particle complex subunit 4 [Vitis vinifera] gi|147807581|emb|CAN66318.1| hypothetical protein VITISV_040622 [Vitis vinifera] gi|296089818|emb|CBI39637.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 137/141 (97%), Positives = 139/141 (98%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPT GCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPTLGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKVIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKVIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDINLSQAVQKDRVA+LGR
Sbjct: 121 ELFDINLSQAVQKDRVALLGR 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105981|ref|XP_002314001.1| predicted protein [Populus trichocarpa] gi|222850409|gb|EEE87956.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 135/141 (95%), Positives = 138/141 (97%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGS+GRMDTNDSLRVASLWHSMHAISQQLSPT GC GIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPTVGCLGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKVIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKVIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDINLSQA+QKDRVA+LGR
Sbjct: 121 ELFDINLSQAIQKDRVALLGR 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453994|ref|XP_004144741.1| PREDICTED: trafficking protein particle complex subunit 4-like [Cucumis sativus] gi|449490796|ref|XP_004158709.1| PREDICTED: trafficking protein particle complex subunit 4-like [Cucumis sativus]

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/141 (95%), Positives = 138/141 (97%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP  GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDINL+QAVQKDRVA+LGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521045|ref|XP_003630811.1| Trafficking protein particle complex subunit [Medicago truncatula] gi|355524833|gb|AET05287.1| Trafficking protein particle complex subunit [Medicago truncatula]

 Score =  284 bits (726), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 138/141 (97%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAA+YSLYIINKSGGLI+YKDYGS+GRMDTNDSLRVASLWHSMHAISQQLSP +GC+GIE
Sbjct: 73  MAAVYSLYIINKSGGLIYYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPVSGCTGIE 132

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTQ MESLLK +YELYTDYVLKNPFYEMEMPIRC
Sbjct: 133 LLQADTFDLHCFQSLTGTKFFVVCEPGTQQMESLLKFVYELYTDYVLKNPFYEMEMPIRC 192

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDINL+QAVQKDRVA+LGR
Sbjct: 193 ELFDINLAQAVQKDRVALLGR 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508168|gb|AFK42150.1| unknown [Medicago truncatula]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 138/141 (97%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAA+YSLYIINKSGGLI+YKDYGS+GRMDTNDSLRVASLWHSMHAISQQLSP +GC+GIE
Sbjct: 1   MAAVYSLYIINKSGGLIYYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPVSGCTGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTQ MESLLK +YELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTQQMESLLKFVYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDINL+QAVQKDRVA+LGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587546|ref|XP_002534307.1| synbindin, putative [Ricinus communis] gi|223525526|gb|EEF28075.1| synbindin, putative [Ricinus communis]

 Score =  280 bits (717), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 130/141 (92%), Positives = 136/141 (96%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAAIYSLYIINKSGGLIFYKDYGS GRMDTNDSLRVASLWHSMHAISQQLSP  GCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSGGRMDTNDSLRVASLWHSMHAISQQLSPVVGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVVCEPGT HME+LLKVIYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTPHMEALLKVIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDIN++Q +QKDRVA+LGR
Sbjct: 121 ELFDINVTQIIQKDRVALLGR 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507408|gb|AFK41770.1| unknown [Lotus japonicus]

 Score =  277 bits (709), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/141 (90%), Positives = 136/141 (96%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAAIYSLYIINKSGGLI+YKDYGSAGRMDTND+LRVASLWHSMHAISQQLSP +GC+GIE
Sbjct: 1   MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDTLRVASLWHSMHAISQQLSPVSGCAGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVV EPGTQ MESLLK +YELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVSEPGTQQMESLLKFVYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDINL+QAVQKDRVA+L R
Sbjct: 121 ELFDINLTQAVQKDRVALLAR 141

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722144|ref|NP_001235954.1| uncharacterized protein LOC100305989 [Glycine max] gi|255627205|gb|ACU13947.1| unknown [Glycine max]

 Score =  274 bits (700), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 128/141 (90%), Positives = 133/141 (94%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAAIYSLYIINKSGGLI+YKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP +GC GIE
Sbjct: 1   MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVSGCLGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFFVV EPG QHMESLLK +YELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVSEPGAQHMESLLKFVYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDINL+QAVQKD V  LGR
Sbjct: 121 ELFDINLTQAVQKDHVTFLGR 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491479|ref|XP_003616027.1| Trafficking protein particle complex subunit [Medicago truncatula] gi|355517362|gb|AES98985.1| Trafficking protein particle complex subunit [Medicago truncatula]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 125/141 (88%), Positives = 137/141 (97%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAAIYSLYIINKSGGLI+YKDYGSAGRMDTND+LRVASLWHSMHAISQQLSP +GCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDTLRVASLWHSMHAISQQLSPVSGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LL+ADTFDLHCFQSLTGTKFF VCEPGTQ +ESLLK +YELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFAVCEPGTQQIESLLKYVYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFD+NL+Q+VQKDRVA+LG+
Sbjct: 121 ELFDMNLTQSVQKDRVALLGQ 141

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241747|ref|NP_195848.1| SNARE-like superfamily protein [Arabidopsis thaliana] gi|297806167|ref|XP_002870967.1| hypothetical protein ARALYDRAFT_908094 [Arabidopsis lyrata subsp. lyrata] gi|7406424|emb|CAB85533.1| putative protein [Arabidopsis thaliana] gi|21618125|gb|AAM67175.1| unknown [Arabidopsis thaliana] gi|28393092|gb|AAO41980.1| unknown protein [Arabidopsis thaliana] gi|28827482|gb|AAO50585.1| unknown protein [Arabidopsis thaliana] gi|297316804|gb|EFH47226.1| hypothetical protein ARALYDRAFT_908094 [Arabidopsis lyrata subsp. lyrata] gi|332003071|gb|AED90454.1| SNARE-like superfamily protein [Arabidopsis thaliana]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/141 (90%), Positives = 133/141 (94%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP  GCSGIE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSL GTKFFVVCEPGT HMESLL+ IYELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLSQAVQKDRVAMLGR 141
           ELFDINL+QAVQ DRVA+LGR
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2180117	141	AT5G02280 "AT5G02280" [Arabido	1.0	1.0	0.907	1.3e-66
UNIPROTKB|Q2TBL9	219	TRAPPC4 "Trafficking protein p	0.751	0.484	0.584	2.7e-36
UNIPROTKB|F2Z5G7	219	TRAPPC4 "Uncharacterized prote	0.751	0.484	0.584	2.7e-36
MGI|MGI:1926211	219	Trappc4 "trafficking protein p	0.751	0.484	0.584	3.5e-36
RGD|1302991	219	Trappc4 "trafficking protein p	0.751	0.484	0.584	3.5e-36
UNIPROTKB|Q9Y296	219	TRAPPC4 "Trafficking protein p	0.751	0.484	0.575	5.7e-36
ZFIN|ZDB-GENE-040426-1734	219	trappc4 "trafficking protein p	0.751	0.484	0.556	7.2e-36
UNIPROTKB|F1NXY8	218	TRAPPC4 "Uncharacterized prote	0.751	0.486	0.575	1.9e-35
UNIPROTKB|E2RSA9	219	TRAPPC4 "Uncharacterized prote	0.751	0.484	0.584	3.1e-35
FB|FBgn0260861	219	Trs23 [Drosophila melanogaster	0.751	0.484	0.566	1.7e-34

TAIR|locus:2180117 AT5G02280 "AT5G02280" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 128/141 (90%), Positives = 133/141 (94%)

Query:     1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
             MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP  GCSGIE
Sbjct:     1 MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query:    61 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120
             LLEADTFDLHCFQSL GTKFFVVCEPGT HMESLL+ IYELYTDYVLKNPFYE+EMPIRC
Sbjct:    61 LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query:   121 ELFDINLSQAVQKDRVAMLGR 141
             ELFDINL+QAVQ DRVA+LGR
Sbjct:   121 ELFDINLTQAVQSDRVALLGR 141

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

UNIPROTKB|Q2TBL9 TRAPPC4 "Trafficking protein particle complex subunit 4" [Bos taurus (taxid:9913)]

 Score = 340 (124.7 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query:    27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
             R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct:   102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query:    87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
                 ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:   162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F2Z5G7 TRAPPC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 340 (124.7 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query:    27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
             R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct:   102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query:    87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
                 ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:   162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0030425 "dendrite" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

MGI|MGI:1926211 Trappc4 "trafficking protein particle complex 4" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query:    27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
             R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct:   102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query:    87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
                 ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:   162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0016358 "dendrite development" evidence=IDA

GO:0030008 "TRAPP complex" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0045212 "neurotransmitter receptor biosynthetic process" evidence=TAS

RGD|1302991 Trappc4 "trafficking protein particle complex 4" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query:    27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
             R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct:   102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query:    87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
                 ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:   162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA;ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA;ISO

GO:0016358 "dendrite development" evidence=IEA;ISO

GO:0030008 "TRAPP complex" evidence=IEA;ISO

GO:0030425 "dendrite" evidence=IEA;ISO

GO:0045202 "synapse" evidence=ISO

UNIPROTKB|Q9Y296 TRAPPC4 "Trafficking protein particle complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 337 (123.7 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 61/106 (57%), Positives = 82/106 (77%)

Query:    27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
             R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct:   102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query:    87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
                 ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:   162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0016358 "dendrite development" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0045202 "synapse" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-1734 trappc4 "trafficking protein particle complex 4" [Danio rerio (taxid:7955)]

 Score = 334 (122.6 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 59/106 (55%), Positives = 81/106 (76%)

Query:    27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
             ++ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE D F LHCFQ+LTG KF V+ +P
Sbjct:   102 KLSSNEKLMLASMFHSLFAIGSQLSPEVGSSGIEMLETDMFKLHCFQTLTGIKFIVLADP 161

Query:    87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
                 +++LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:   162 RQSGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKSALE 207

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1NXY8 TRAPPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 339 (124.4 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 61/106 (57%), Positives = 82/106 (77%)

Query:    27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
             R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct:   101 RLSSNEKLMLASMFHSLFAIGSQLSPEVGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 160

Query:    87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
                 +++LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:   161 RQAGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 206

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

UNIPROTKB|E2RSA9 TRAPPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
 Identities = 62/106 (58%), Positives = 82/106 (77%)

Query:    27 RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
             R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P
Sbjct:   102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query:    87 GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
                 ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:   162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0030425 "dendrite" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

FB|FBgn0260861 Trs23 [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 60/106 (56%), Positives = 80/106 (75%)

Query:    24 SAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVV 83
             S  +M TN+ + +AS+++ + AI+ QLSP    SGIE+LEADTF LHCFQ+LTG KF ++
Sbjct:    99 SRPKMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEILEADTFTLHCFQTLTGIKFIII 158

Query:    84 CEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQ 129
              E G   ++ LL+ +YELY+DYVLKNPFY +EMPIRCELFD  L +
Sbjct:   159 SETGLNGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDNKLQE 204

GO:0030008 "TRAPP complex" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O43041	TRS23_SCHPO	No assigned EC number	0.4806	0.9078	0.9696	yes	no
Q54UU1	TPPC4_DICDI	No assigned EC number	0.5234	0.9007	0.9407	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00022556001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_27, whole genome shotgun sequence); (141 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027363001	SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_4, whole genome shotg [...] (186 aa)					•		•		0.656
	GSVIVG00037771001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_91, whole geno [...] (169 aa)					•		•	•	0.462
	GSVIVG00024229001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (176 aa)				•			•		0.411
	GSVIVG00008897001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (170 aa)				•	•		•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	3e-66
COG5122	134	COG5122, TRS23, Transport protein particle (TRAPP)	3e-39
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	3e-07

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score =  196 bits (501), Expect = 3e-66
 Identities = 77/133 (57%), Positives = 99/133 (74%), Gaps = 4/133 (3%)

Query: 4   IYSLYIINKSGGLIFYKDYGS---AGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60
           I+SLYI N++GGLI+YK++      G++ TN+   +A + HS+HAIS +LSP  G SGIE
Sbjct: 1   IHSLYIFNRAGGLIYYKEWHRPKQEGKLTTNEYKLLAGMLHSLHAISSKLSPLPGSSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQ-HMESLLKVIYELYTDYVLKNPFYEMEMPIR 119
            LE DTF LHC Q+LTG KF +V +PGT  + +SLL+  YELY+DYVLKNPFY +EMPIR
Sbjct: 61  SLETDTFKLHCLQTLTGIKFVLVTDPGTGPNRDSLLRKYYELYSDYVLKNPFYSLEMPIR 120

Query: 120 CELFDINLSQAVQ 132
           CELFD  L Q V+
Sbjct: 121 CELFDEKLDQYVR 133

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

>gnl|CDD|227451 COG5122, TRS23, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score =  128 bits (324), Expect = 3e-39
 Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 1/131 (0%)

Query: 3   AIYSLYIINKSGGLIFYKDYGSA-GRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIEL 61
           A+   +IINKSGGLIF +++G     +++N+ L +AS  H + AI  Q  P  G SG  +
Sbjct: 2   AVEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLV 61

Query: 62  LEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCE 121
           L    F +  FQ+ TGTKF  V E  T +    L+ IY LY+DYV KNPFY  EMPI+C 
Sbjct: 62  LYFRNFVMTIFQTTTGTKFVFVAEKRTVNALFQLQKIYSLYSDYVTKNPFYSPEMPIQCS 121

Query: 122 LFDINLSQAVQ 132
           LFD +L +  +
Sbjct: 122 LFDEHLKRMFE 132

Length = 134

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 72  FQSLTGTKFFVVCEPGTQ---HMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLS 128
           + + T  KF ++ +  T+    ++   + ++ELY   ++ NPFYE   PIR   FD  + 
Sbjct: 64  YVTNTHIKFILLHDSSTERDDDIKQFFREVHELYIKTLM-NPFYEPNDPIRSPAFDAKVR 122

Query: 129 QAVQK 133
           +  +K
Sbjct: 123 RLAKK 127

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	100.0
KOG3368	140	consensus Transport protein particle (TRAPP) compl	100.0
KOG3369	199	consensus Transport protein particle (TRAPP) compl	100.0
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	100.0
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	99.96
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	99.93
KOG3487	139	consensus TRAPP 20 K subunit [Intracellular traffi	99.92
KOG3444	121	consensus Uncharacterized conserved protein [Funct	99.85
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	96.63
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	96.46
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	95.46
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	94.51
PF08217	604	DUF1712: Fungal domain of unknown function (DUF171	89.0

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=100.00  E-value=8.5e-46  Score=271.21  Aligned_cols=130  Identities=50%  Similarity=0.991  Sum_probs=103.0

Q ss_pred             EEEEEEEeCCCceEEEeecCCCC-----CCCChhHHHHHHHHHHHHHHHHhhCCC------CCCCCceEeecCcEEEEEE
Q 032406            4 IYSLYIINKSGGLIFYKDYGSAG-----RMDTNDSLRVASLWHSMHAISQQLSPT------TGCSGIELLEADTFDLHCF   72 (141)
Q Consensus         4 i~~~~Ii~r~g~~iy~~~~~~~~-----~~~~~~~~~l~~~l~sL~~i~~klsp~------~~~~g~~~~~t~~ykv~~y   72 (141)
                      ||+||||||+|+|||+++|.+..     +.++|+.+.|+|++|||++|+.+++|.      ++.+|++++.|+.|++|+|
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~   80 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF   80 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence            79999999999999999999863     567788888999999999999999993      3457999999999999999


Q ss_pred             EcCCCcEEEEEecCCchhHHH-HHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHh
Q 032406           73 QSLTGTKFFVVCEPGTQHMES-LLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQK  133 (141)
Q Consensus        73 ~T~TgiKfvlitd~~~~~~~~-~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~  133 (141)
                      ||+||+|||++||++.++.++ +++.+|++|+|||+|||||++||||+|++|+++|++++++
T Consensus        81 eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~  142 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS  142 (142)
T ss_dssp             E-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred             EcCcCcEEEEEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence            999999999999999855555 4455559999999999999999999999999999999874

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-42  Score=245.91  Aligned_cols=132  Identities=29%  Similarity=0.596  Sum_probs=122.6

Q ss_pred             ccEEEEEEEeCCCceEEEeecCCCCC---CCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCc
Q 032406            2 AAIYSLYIINKSGGLIFYKDYGSAGR---MDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGT   78 (141)
Q Consensus         2 ~~i~~~~Ii~r~g~~iy~~~~~~~~~---~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~Tgi   78 (141)
                      |+||+||||||+|+|||+++|++..+   ..++++++++|+++||+.|++|++|.....||.++.|+.||+|+||||||+
T Consensus         1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptgl   80 (140)
T KOG3368|consen    1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGL   80 (140)
T ss_pred             CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCc
Confidence            68999999999999999999998722   233446779999999999999999988889999999999999999999999


Q ss_pred             EEEEEecCCchhHHHHHHHHHH-HHHHhhhhCCCCC--CCCcccchhHHHHHHHHHHh
Q 032406           79 KFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYE--MEMPIRCELFDINLSQAVQK  133 (141)
Q Consensus        79 Kfvlitd~~~~~~~~~l~~iy~-~Yv~~v~~NPfy~--~~~pI~s~~F~~~v~~~~~~  133 (141)
                      ||||+||++..+++++|++||. +||++|++||+|+  +++||+|+.|...+|+.++.
T Consensus        81 k~vl~Tdpk~~~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrs  138 (140)
T KOG3368|consen   81 KFVLNTDPKAGSIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRS  138 (140)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhcc
Confidence            9999999999999999999995 9999999999999  99999999999999999874

>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7e-39  Score=238.00  Aligned_cols=133  Identities=62%  Similarity=0.998  Sum_probs=124.4

Q ss_pred             ccEEEEEEEeCCCceEEEeecC----------------------------------------------------------
Q 032406            2 AAIYSLYIINKSGGLIFYKDYG----------------------------------------------------------   23 (141)
Q Consensus         2 ~~i~~~~Ii~r~g~~iy~~~~~----------------------------------------------------------   23 (141)
                      |.|++++||||+|++||.+++.                                                          
T Consensus         1 maI~~~~IINKsGgLIfq~e~~~~~~e~et~d~~l~~~~~~~vvaf~~kdgik~~~~~~~vNg~~v~g~~~~~Gl~~~~~   80 (199)
T KOG3369|consen    1 MAIESLFIINKSGGLIFQREFGNPRQELETFDLLLLASDLKVVVAFGSKDGIKVGHLVQAVNGENVNGYILYDGLSSPRN   80 (199)
T ss_pred             CceEEEEEEecCCcEEEEeecCCccccccchhhhhhhcccceeEEeecccccchhheeeeecccccccceecccccCccc
Confidence            5689999999999999999998                                                          


Q ss_pred             -------CCCCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCchhHHHHHH
Q 032406           24 -------SAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLK   96 (141)
Q Consensus        24 -------~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~~~~~~l~   96 (141)
                             ..++.++||.+.|++++||++.|+.+++|-++++|++...|+++++|||+|.||+|||+++++....++.+|+
T Consensus        81 ypv~~~f~~p~~ttNEkL~las~fhsl~aI~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~~~aD~lLr  160 (199)
T KOG3369|consen   81 YPVNGKFGRPKLTTNEKLILASSFHSLFAISTQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGTQGADSLLR  160 (199)
T ss_pred             cccccccCCCcccccchhhhhhhhcchhheeeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCchhHHHHHH
Confidence                   1134677888889999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhh
Q 032406           97 VIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKD  134 (141)
Q Consensus        97 ~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~  134 (141)
                      +||++|.|||+|||||+++|||+|++||.+|+.++++.
T Consensus       161 KiYelYsDyvlKNPfYSlEMPIRc~lFDe~lk~~le~~  198 (199)
T KOG3369|consen  161 KIYELYSDYVLKNPFYSLEMPIRCELFDEKLKFLLESA  198 (199)
T ss_pred             HHHHHHHHHhhcCCccCcccceeHHHhhHHHHHHHhhc
Confidence            99999999999999999999999999999999998763

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.3e-35  Score=204.36  Aligned_cols=132  Identities=44%  Similarity=0.701  Sum_probs=123.2

Q ss_pred             ccEEEEEEEeCCCceEEEeecCCC-CCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEE
Q 032406            2 AAIYSLYIINKSGGLIFYKDYGSA-GRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKF   80 (141)
Q Consensus         2 ~~i~~~~Ii~r~g~~iy~~~~~~~-~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKf   80 (141)
                      |.+..|.|+||+|++||.++|.+. .++++||.+.|+|++|++.+|+.+++|-++++|.+...++++.++.|+|.||+||
T Consensus         1 mave~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kF   80 (134)
T COG5122           1 MAVEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKF   80 (134)
T ss_pred             CceeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEE
Confidence            456899999999999999999665 7889999999999999999999999998888999889999999999999999999


Q ss_pred             EEEecCCchhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHh
Q 032406           81 FVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQK  133 (141)
Q Consensus        81 vlitd~~~~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~  133 (141)
                      |+++.++..+.+--+|++|++|+|||+|||||.++|||+|.+||.+|++++.+
T Consensus        81 V~~~~k~t~na~~ql~kiY~lYsdYV~knPfys~EMPI~c~lFde~lkrm~e~  133 (134)
T COG5122          81 VFVAEKRTVNALFQLQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEG  133 (134)
T ss_pred             EEEecCCchhHHHHHHHHHHHHHHHhhcCCCCCcccceehhhhhHHHHHHhcC
Confidence            99998888888878999999999999999999999999999999999998764

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=99.96  E-value=2.9e-29  Score=181.53  Aligned_cols=123  Identities=22%  Similarity=0.385  Sum_probs=93.8

Q ss_pred             EEeCCCceEEEeecCCCCCCCC--hhHHHHHHHHH-HHHHHHHhhCCCCCCCCce-EeecCcEEEEEEEcCCCcEEEEEe
Q 032406            9 IINKSGGLIFYKDYGSAGRMDT--NDSLRVASLWH-SMHAISQQLSPTTGCSGIE-LLEADTFDLHCFQSLTGTKFFVVC   84 (141)
Q Consensus         9 Ii~r~g~~iy~~~~~~~~~~~~--~~~~~l~~~l~-sL~~i~~klsp~~~~~g~~-~~~t~~ykv~~y~T~TgiKfvlit   84 (141)
                      |||++++|||.+++...+....  ++++ ...++| |||.+.++++....+..+. .+++++|+||||+|+||+||||++
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l-~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~   79 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHL-YQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVH   79 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHH-HHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEE
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHH-HHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEE
Confidence            8999999999999986532221  1233 666777 8999999887633344443 357899999999999999999999


Q ss_pred             c-----CCchhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHh
Q 032406           85 E-----PGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQK  133 (141)
Q Consensus        85 d-----~~~~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~  133 (141)
                      +     .+++++|++|++||++|++.++ ||||.+++||+|+.|+++|++++++
T Consensus        80 ~~~~~~~~d~~ik~fF~~vh~~Y~~~~~-NPF~~~~~~I~S~~Fd~~v~~l~~k  132 (132)
T PF04628_consen   80 DMSDNSIRDEDIKQFFKEVHELYVKALC-NPFYQPGTPIKSPKFDSRVRALAKK  132 (132)
T ss_dssp             CGGG-S--HHHHHHHHHHHHHHHHHHHT-STTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred             ecccCCcchHHHHHHHHHHHHHHHHHcc-CCCCCCCCCcCCHHHHHHHHHHhcC
Confidence            9     3467999999999999999665 9999999999999999999999985

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=99.93  E-value=1.3e-25  Score=157.48  Aligned_cols=129  Identities=22%  Similarity=0.375  Sum_probs=105.9

Q ss_pred             EEEEEEeCCCceEEEeecCCCCCCCChhHHH-H-HHHHHHHHHHHHhhCCCCCCCCceEe-ecCcEEEEEEEcCCCcEEE
Q 032406            5 YSLYIINKSGGLIFYKDYGSAGRMDTNDSLR-V-ASLWHSMHAISQQLSPTTGCSGIELL-EADTFDLHCFQSLTGTKFF   81 (141)
Q Consensus         5 ~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~-l-~~~l~sL~~i~~klsp~~~~~g~~~~-~t~~ykv~~y~T~TgiKfv   81 (141)
                      .+++|+|+.++|+|.+++.+..+.+..+..+ | ..++||--++.+.+.|+...+.|.++ ...+..+++|.||+|+||+
T Consensus         3 ~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf~   82 (136)
T COG5603           3 EYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKFL   82 (136)
T ss_pred             ceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceEE
Confidence            4789999999999999999665555555444 3 46778544444555555455666665 3688999999999999999


Q ss_pred             EEecCC-chhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhh
Q 032406           82 VVCEPG-TQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKD  134 (141)
Q Consensus        82 litd~~-~~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~  134 (141)
                      +++... .+++|.||+++|++|++.++ ||||++++||+|++|+.+|+++.+.+
T Consensus        83 ~iH~n~s~~N~rsF~qevHely~ktLm-spfy~~~~pirsqafd~~Vr~~ar~~  135 (136)
T COG5603          83 FIHQNQSRKNARSFLQEVHELYAKTLM-SPFYEPDEPIRSQAFDDGVREAARVC  135 (136)
T ss_pred             EEeccchhhhHHHHHHHHHHHHHHHhh-CcccCCCccccchhhhhhHHHHHHhh
Confidence            999876 56999999999999999887 99999999999999999999998864

>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.3e-25  Score=155.55  Aligned_cols=130  Identities=18%  Similarity=0.323  Sum_probs=109.3

Q ss_pred             EEEEEEeCCCceEEEeecCCCCC--CCChh-HHHHHHHHHHHHHHHHhhCCCCCCCCceEe-ecCcEEEEEEEcCCCcEE
Q 032406            5 YSLYIINKSGGLIFYKDYGSAGR--MDTND-SLRVASLWHSMHAISQQLSPTTGCSGIELL-EADTFDLHCFQSLTGTKF   80 (141)
Q Consensus         5 ~~~~Ii~r~g~~iy~~~~~~~~~--~~~~~-~~~l~~~l~sL~~i~~klsp~~~~~g~~~~-~t~~ykv~~y~T~TgiKf   80 (141)
                      .+|+|+|+.++|+|.-+|..+++  ...++ ..+-..++|+..++++++.|..++..++.+ ..+++-|++|.|+++++|
T Consensus         3 ~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas~i~f   82 (139)
T KOG3487|consen    3 AYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTASHIRF   82 (139)
T ss_pred             eEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccCcEEE
Confidence            39999999999999999986522  22222 333477889877888888887666666666 478999999999999999


Q ss_pred             EEEecCC-chhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406           81 FVVCEPG-TQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR  135 (141)
Q Consensus        81 vlitd~~-~~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~  135 (141)
                      +++++.+ .++++.||+++|++|++.++ ||||.+++||+|++|+.+++.+.+++-
T Consensus        83 ~mlh~~~~~~~ik~Ffqev~elyik~lm-npFy~~~dpirs~afd~kv~~~~rkhl  137 (139)
T KOG3487|consen   83 IMLHINRADDNIKLFFQEVHELYIKTLM-NPFYEINDPIRSPAFDHKVRGLARKHL  137 (139)
T ss_pred             EEEeeccccccHHHHHHHHHHHHHHHHh-CcccccCCccccHHHHHHHHHHHHHHh
Confidence            9999987 46999999999999999886 999999999999999999999998864

>KOG3444 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=2.3e-20  Score=129.22  Aligned_cols=107  Identities=21%  Similarity=0.409  Sum_probs=90.0

Q ss_pred             cEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHH-HHHHHHHhhCC-CCCC-------CCceEeecCcEEEEEEE
Q 032406            3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWH-SMHAISQQLSP-TTGC-------SGIELLEADTFDLHCFQ   73 (141)
Q Consensus         3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~-sL~~i~~klsp-~~~~-------~g~~~~~t~~ykv~~y~   73 (141)
                      |+.|+.+++..++|+|++.++.     .++++.+...+| |||.+.++++. .++.       -|+ +++|++||+|+|.
T Consensus         1 m~v~~av~g~kn~~lyi~s~t~-----~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGL-Ly~ted~kvYgfv   74 (121)
T KOG3444|consen    1 MLVCLAVAGPKNEPLYIESITP-----KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGL-LYPTEDYKVYGFV   74 (121)
T ss_pred             CEEEEEEEcCCCCccEEEecCc-----HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcc-cccccceeEEEEE
Confidence            4679999999999999998875     577888877777 99999999964 2211       254 6899999999999


Q ss_pred             cCCCcEEEEEecCC-----chhHHHHHHHHHHHHHHhhhhCCCCCCCC
Q 032406           74 SLTGTKFFVVCEPG-----TQHMESLLKVIYELYTDYVLKNPFYEMEM  116 (141)
Q Consensus        74 T~TgiKfvlitd~~-----~~~~~~~l~~iy~~Yv~~v~~NPfy~~~~  116 (141)
                      |+|.+|||+++|.+     +.++|++|+.+|-+|.+ ++.||||.|+.
T Consensus        75 tNTkVKFIlvvdssd~avreteiRsv~r~~h~l~td-~~~npfy~pg~  121 (121)
T KOG3444|consen   75 TNTKVKFILVVDSSDYAVRETEIRSVFRILHLLYTD-LSCNPFYLPGL  121 (121)
T ss_pred             eccEEEEEEEEcCCcceehhHHHHHHHHHHHHHHHH-heecceeccCC
Confidence            99999999999875     46999999999999999 55699999873

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.053  Score=41.24  Aligned_cols=125  Identities=13%  Similarity=0.156  Sum_probs=76.0

Q ss_pred             ccEEEEEEEeCCCce--EEEeecCCC--C--CCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcC
Q 032406            2 AAIYSLYIINKSGGL--IFYKDYGSA--G--RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSL   75 (141)
Q Consensus         2 ~~i~~~~Ii~r~g~~--iy~~~~~~~--~--~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~   75 (141)
                      |.||++.|+++.+..  +....+.-+  +  ..+.-++    .+.|.-+-++++..|.    ...++.-++|.+|+|.-+
T Consensus         1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~E----fm~F~sktvaeRt~~g----~rqsvk~~~Y~~h~yvrn   72 (198)
T KOG0861|consen    1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQE----FMTFISKTVAERTGPG----QRQSVKHEEYLVHVYVRN   72 (198)
T ss_pred             CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHH----HHHHHHHHHHHhcCcc----cccccccceeEEEEEEec
Confidence            679999999984333  222222110  0  0011111    2345667777777664    356788899999999999


Q ss_pred             CCcEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhhhh
Q 032406           76 TGTKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVA  137 (141)
Q Consensus        76 TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~~~  137 (141)
                      .|+-=|+++|..=|  ..-.+|++|-+-|..   ++|=-+-.-.-++..=-..++.++.+|+.|
T Consensus        73 dgL~~V~~~D~eYP~rvA~tLL~kvld~~~~---k~~~~~W~~~~~~~~~~~~L~~~l~kyqdP  133 (198)
T KOG0861|consen   73 DGLCGVLIADDEYPVRVAFTLLNKVLDEFTT---KVPATQWPVGETADLSYPYLDTLLSKYQDP  133 (198)
T ss_pred             CCeeEEEEecCcCchhHHHHHHHHHHHHHhh---cCcccccCcCCCcCCCchhHHHHHHHhcCh
Confidence            99999999998744  444677888777755   454311111112222335677777777764

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.46  E-value=0.2  Score=35.99  Aligned_cols=91  Identities=21%  Similarity=0.368  Sum_probs=57.6

Q ss_pred             cEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCC-CCCCCceEeecCcEEEEEEEcCCCcEEE
Q 032406            3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPT-TGCSGIELLEADTFDLHCFQSLTGTKFF   81 (141)
Q Consensus         3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~-~~~~g~~~~~t~~ykv~~y~T~TgiKfv   81 (141)
                      ||.+++|+|++|++++.|-|..   .+.++...++.-      +..+.... +....+  +..+++++ .|.-.+++-|+
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~i--~~~~~~~~-vy~~~~dl~~~   68 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRD---VSEEERQKLFEK------FIKKKSSRNSKQSPI--FEHDNYRI-VYKRYSDLYFV   68 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESST---STSHHHHHHHHH------HHHHHHTSSSSSTSE--EEETTEEE-EEEEETTEEEE
T ss_pred             CEEEEEEEcCCCCEEEehhcCC---ccHHHHHHHHHH------HHHHHHhccccccee--eeccccee-eeEeeccEEEE
Confidence            6889999999999999999943   222232222221      22222222 112233  34566666 67778899999


Q ss_pred             EEecCCch--hHHHHHHHHHHHHHHh
Q 032406           82 VVCEPGTQ--HMESLLKVIYELYTDY  105 (141)
Q Consensus        82 litd~~~~--~~~~~l~~iy~~Yv~~  105 (141)
                      ++++.+..  -+-++++.+.+++-++
T Consensus        69 ~v~~~~eNel~~~e~l~~~v~~l~~~   94 (141)
T PF01217_consen   69 VVGDENENELLLLEFLHRLVEVLDDY   94 (141)
T ss_dssp             EEESSTSBHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccchHHHHHHHHHhhhhhhhh
Confidence            99998765  3446777777766664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=95.46  E-value=0.61  Score=39.70  Aligned_cols=84  Identities=15%  Similarity=0.316  Sum_probs=61.3

Q ss_pred             EEEEEeCCCceEEEeecCCCCCCCChhHHH-HHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEe
Q 032406            6 SLYIINKSGGLIFYKDYGSAGRMDTNDSLR-VASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVC   84 (141)
Q Consensus         6 ~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~-l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlit   84 (141)
                      .+.|+...|.|||.+. .      .++.+. +.|++.++-.+.+.-.     ..++.+..++.++. |..-+.+-+|+++
T Consensus        13 h~fIlS~AGKPIysr~-G------~e~~l~~~~g~~~aiiS~~~~~~-----d~l~~i~~~~~~iv-fl~r~pl~lv~vS   79 (415)
T PF03164_consen   13 HFFILSSAGKPIYSRY-G------DEDKLSSLMGVIQAIISFFQSNG-----DELRSIRAGDHRIV-FLNRGPLILVAVS   79 (415)
T ss_pred             eEEEECCCCceeEEec-C------ChHHHHHHHHHHHHHHHHHHhCC-----CcEEEEEeCCEEEE-EEecCCEEEEEEc
Confidence            5789999999999975 3      244443 7888888877765332     35778888888887 5568999999998


Q ss_pred             cCCch--hHHHHHHHHHHHH
Q 032406           85 EPGTQ--HMESLLKVIYELY  102 (141)
Q Consensus        85 d~~~~--~~~~~l~~iy~~Y  102 (141)
                      ....+  .++.-|+-+|..-
T Consensus        80 ~~~e~~~~l~~qL~~ly~qi   99 (415)
T PF03164_consen   80 KTGESESQLRKQLDYLYSQI   99 (415)
T ss_pred             CCcCCHHHHHHHHHHHHHHH
Confidence            87643  5777777777433

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=94.51  E-value=0.46  Score=30.94  Aligned_cols=58  Identities=12%  Similarity=0.259  Sum_probs=44.0

Q ss_pred             HHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHH
Q 032406           44 HAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTD  104 (141)
Q Consensus        44 ~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~  104 (141)
                      +.+.+++.|..  .+-.++..++|.+|.+. ..|+-++++||..-+  -.=.+|++|.+.|.+
T Consensus         3 ~~il~~i~~~~--~~k~s~~~~~~~fh~~~-~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~   62 (83)
T PF13774_consen    3 RKILKRIPPNG--NSKMSYESGNYVFHYLV-EDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQ   62 (83)
T ss_dssp             HHHHHTS-TTS--ESEEEEEETTEEEEEEE-ETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCC--CCeEEEEECCEEEEEEE-cCCeEEEEEEcCCCCcchHHHHHHHHHHHHHH
Confidence            45677777532  13457788999999999 999999999999865  344699999988887

...

>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown

Probab=89.00  E-value=11  Score=33.91  Aligned_cols=114  Identities=15%  Similarity=0.244  Sum_probs=76.9

Q ss_pred             CceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecC-----Cc
Q 032406           14 GGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP-----GT   88 (141)
Q Consensus        14 g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~-----~~   88 (141)
                      .+.||+.-. .....+.|+++...|+.-|+-.|++..++..+   -..+.|+.-++-.++-=.|+++++..+.     ..
T Consensus        17 ~kILfY~p~-~~~~~~~neql~~IGL~qglv~Ft~~Fs~~~~---~~~I~T~K~r~v~~e~Ep~~Wi~l~I~~~~~~~~~   92 (604)
T PF08217_consen   17 KKILFYYPF-EESETSLNEQLRQIGLAQGLVSFTRTFSPDDP---CDSIHTEKSRIVFYEPEPGFWIVLSINLPKEQSTK   92 (604)
T ss_pred             ceEEEEecC-CccCCCHHHHHHHhhHHHHHHHHHHhcCCCCc---ccceeecceEEEEEEecCCEEEEEEEecCcCCccc
Confidence            345666433 11233456677789999999999999988643   3457789999999999999999987662     11


Q ss_pred             ----hhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406           89 ----QHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR  135 (141)
Q Consensus        89 ----~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~  135 (141)
                          ..++..|++.|+.|.=  ..-||-..-.  .-+.|...++++...|-
T Consensus        93 ~~~~~~L~~~L~~~Y~~F~L--~hGsfs~~l~--~r~~L~~~L~~F~~~fl  139 (604)
T PF08217_consen   93 DGPEQYLLSVLKQAYSMFRL--FHGSFSSLLE--GREKLKDRLEDFFSRFL  139 (604)
T ss_pred             cchHHHHHHHHHHHHHHHHH--HcCCHHHhcc--cHHHHHHHHHHHHHHHH
Confidence                1366777777776653  2234433222  56777788887777663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
2zmv_A	227	Crystal Structure Of Synbindin Length = 227		3e-34
2j3t_D	219	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		3e-34
3cue_A	219	Crystal Structure Of A Trapp Subassembly Activating		3e-09
2j3t_C	145	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		7e-06

>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin Length = 227

Iteration: 1
 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 82/106 (77%)
Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161
Query: 87  GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
               ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 219

Iteration: 1
 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 82/106 (77%)
Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161
Query: 87  GTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
               ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 219

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 24/100 (24%)
Query: 57  SGIELLEADTFDLHCFQSLTGTKFFVVC-------EP-----------------GTQHME 92
           SG+  L  D F +  +Q+LTG KF  +        +P                   Q  +
Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176
Query: 93  SLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 132
           + L+ +Y LY+DYV+K+P Y MEMPIR  LFD  + + V+
Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216

>pdb|2J3T|C Chain C, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 145

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 3   AIYSLYIINKSGGLIFYKDY---GSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGI 59
            +++LY+ +++G  + Y ++     AG     +   +  +  S+ +   ++SP     G 
Sbjct: 2   TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGF 61
Query: 60  ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYEMEMPI 118
              +   + LH +++ TG K  +  + G   +  +L  IY  LY ++V+KNP   +   +
Sbjct: 62  LSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTV 121
Query: 119 RCELFDINLSQAVQ 132
           + ELF   L   V+
Sbjct: 122 QSELFRSRLDSYVR 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	7e-51
3cue_C	159	Transport protein particle 18 kDa subunit; membran	6e-45
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	5e-44
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	3e-07
3cue_A	219	Transport protein particle 23 kDa subunit; membran	8e-30
3cue_A	219	Transport protein particle 23 kDa subunit; membran	2e-18
2j3w_A	142	Sedlin, trafficking protein particle complex prote	2e-29

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score =  158 bits (400), Expect = 7e-51
 Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 3   AIYSLYIINKSGGLIFYKDY---GSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGI 59
            +++LY+ +++G  + Y ++     AG     +   +  +  S+ +   ++SP     G 
Sbjct: 2   TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGF 61

Query: 60  ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNPFYEMEMPI 118
              +   + LH +++ TG K  +  + G   +  +L  IY  LY ++V+KNP   +   +
Sbjct: 62  LSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTV 121

Query: 119 RCELFDINLSQAVQ 132
           + ELF   L   V+
Sbjct: 122 QSELFRSRLDSYVR 135

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 159

 Score =  143 bits (361), Expect = 6e-45
 Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 23/153 (15%)

Query: 3   AIYSLYIINKSGGLIFYKDY---------GSAGRMDTNDSLRVASLWHSMHAISQQLSPT 53
            IYS +I ++    IF +++             + +  D+  +  +  S+ +I+Q+LS  
Sbjct: 2   GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKG 61

Query: 54  TGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIY-ELYTDYVLKNPFY 112
           +  + I  +    + +H + + +G  F ++ +   Q    +L+ IY  +Y  YV  N   
Sbjct: 62  SVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLS 121

Query: 113 EMEMP-------------IRCELFDINLSQAVQ 132
             +               I    F   L   + 
Sbjct: 122 PYDFAENENEMRGQGTRKITNRNFISVLESFLA 154

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score =  142 bits (360), Expect = 5e-44
 Identities = 61/110 (55%), Positives = 82/110 (74%)

Query: 24  SAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVV 83
              R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+
Sbjct: 99  GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158

Query: 84  CEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQK 133
            +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++ 
Sbjct: 159 ADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEV 208

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 3  AIYSLYIINKSGGLIFYKDYGSAG---------------RMDTNDSLRVASLWHSMHAIS 47
          AI+S+Y++NK+GGLI+  D  +                 ++     L        +    
Sbjct: 2  AIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGH 61

Query: 48 QQLSPT 53
            L+  
Sbjct: 62 AVLAIN 67

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score =  106 bits (265), Expect = 8e-30
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 26/135 (19%)

Query: 23  GSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFV 82
           G        ++ ++ S         ++       SG+  L  D F +  +Q+LTG KF  
Sbjct: 85  GGGNNNKHTNNEKLGSFKGDDFF--KEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVA 142

Query: 83  VCEP------------------------GTQHMESLLKVIYELYTDYVLKNPFYEMEMPI 118
           +                             Q  ++ L+ +Y LY+DYV+K+P Y MEMPI
Sbjct: 143 ISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPI 202

Query: 119 RCELFDINLSQAVQK 133
           R  LFD  + + V+ 
Sbjct: 203 RSNLFDEKVKKMVEN 217

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score = 77.0 bits (188), Expect = 2e-18
 Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 3   AIYSLYIINKSGGLIFYKDYGSA-GRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIEL 61
           AI ++ +INKSGGLI+ +++ +   ++++N+ L +AS  H + AI+ QL+P       + 
Sbjct: 2   AIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQT 61

Query: 62  LEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYE 113
              +T     +  ++  +       G  +  +  + +     D   K PF  
Sbjct: 62  NIENTIPYIPYVGMSSNRSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTN 113

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score =  103 bits (258), Expect = 2e-29
 Identities = 23/137 (16%), Positives = 59/137 (43%), Gaps = 5/137 (3%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS--LWHSMHAISQQLSPTTGCSG 58
           M+  +   I+      +F  ++   G+ ++ D  R  +  + H+   +  +    +    
Sbjct: 3   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62

Query: 59  I-ELLEADTFDLHCFQSLTGTKFFVVCEPGTQH-MESLLKVIYELYTDYVLKNPFYEMEM 116
           +  + + + + +  F +    +F ++ +   +  +++    +Y+LY  + + NPFYE   
Sbjct: 63  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNS 121

Query: 117 PIRCELFDINLSQAVQK 133
           PIR   FD  +    +K
Sbjct: 122 PIRSSAFDRKVQFLGKK 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	100.0
3cue_A	219	Transport protein particle 23 kDa subunit; membran	100.0
3cue_C	159	Transport protein particle 18 kDa subunit; membran	100.0
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	100.0
2j3w_A	142	Sedlin, trafficking protein particle complex prote	100.0
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	99.89
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	97.84
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	97.33
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.95
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	96.13
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	96.04
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	93.55
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	93.32
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	93.1
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	92.36
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	90.36
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	80.73

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=100.00  E-value=6.5e-48  Score=282.22  Aligned_cols=134  Identities=21%  Similarity=0.444  Sum_probs=124.3

Q ss_pred             ccEEEEEEEeCCCceEEEeecCCCC--CCC-ChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCc
Q 032406            2 AAIYSLYIINKSGGLIFYKDYGSAG--RMD-TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGT   78 (141)
Q Consensus         2 ~~i~~~~Ii~r~g~~iy~~~~~~~~--~~~-~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~Tgi   78 (141)
                      |+||||+||||+|+|||+++|.+.+  +.+ +|+.+.++|++|||++|+++++|.++..|+++++|++|++|||+|+||+
T Consensus         1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI   80 (145)
T ss_dssp             -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred             CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence            5799999999999999999998653  444 4556668999999999999999987788999999999999999999999


Q ss_pred             EEEEEecCCchhHHHHHHHHH-HHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406           79 KFFVVCEPGTQHMESLLKVIY-ELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR  135 (141)
Q Consensus        79 Kfvlitd~~~~~~~~~l~~iy-~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~  135 (141)
                      ||||+||+++++++++|++|| ++|||||+|||||++|+||+|++|+.+|+++++++.
T Consensus        81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~  138 (145)
T 2j3t_C           81 KVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLP  138 (145)
T ss_dssp             EEEEEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred             EEEEEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCc
Confidence            999999999999999999999 899999999999999999999999999999999874

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-45  Score=280.47  Aligned_cols=134  Identities=39%  Similarity=0.699  Sum_probs=124.8

Q ss_pred             ccEEEEEEEeCCCceEEEeecCCC-CCCCChhHHHHHHHHHHHHHHHHhhCCCC--------------------------
Q 032406            2 AAIYSLYIINKSGGLIFYKDYGSA-GRMDTNDSLRVASLWHSMHAISQQLSPTT--------------------------   54 (141)
Q Consensus         2 ~~i~~~~Ii~r~g~~iy~~~~~~~-~~~~~~~~~~l~~~l~sL~~i~~klsp~~--------------------------   54 (141)
                      |+||+||||||+|+|||+++|.+. .++++||.+.|+|++||+++|+.+++|..                          
T Consensus         1 M~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (219)
T 3cue_A            1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRS   80 (219)
T ss_dssp             -CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC-----
T ss_pred             CeeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccccc
Confidence            579999999999999999999876 57888999999999999999999999864                          


Q ss_pred             ----------------------------------CCCCceEeecCcEEEEEEEcCCCcEEEEEecCCc------------
Q 032406           55 ----------------------------------GCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGT------------   88 (141)
Q Consensus        55 ----------------------------------~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~------------   88 (141)
                                                        +..||+++.|++|++|||+|+||+||||+||+..            
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~  160 (219)
T 3cue_A           81 DTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDK  160 (219)
T ss_dssp             -----------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC------------
T ss_pred             ccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccc
Confidence                                              2348999999999999999999999999999987            


Q ss_pred             ------------hhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406           89 ------------QHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR  135 (141)
Q Consensus        89 ------------~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~  135 (141)
                                  +++|++|++||++|||||||||||.+|+||+|+.|+.+|++++++++
T Consensus       161 ~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~  219 (219)
T 3cue_A          161 PDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ  219 (219)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence                        78999999999999999999999999999999999999999999874

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-45  Score=269.69  Aligned_cols=134  Identities=24%  Similarity=0.386  Sum_probs=120.8

Q ss_pred             ccEEEEEEEeCCCceEEEeecCCC-----C----CCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEE
Q 032406            2 AAIYSLYIINKSGGLIFYKDYGSA-----G----RMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCF   72 (141)
Q Consensus         2 ~~i~~~~Ii~r~g~~iy~~~~~~~-----~----~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y   72 (141)
                      |+|||||||||+|+|||+++|.+.     +    +.++|+.++++|++|||++|+++++|.....||.++.|++|++|+|
T Consensus         1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~   80 (159)
T 3cue_C            1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY   80 (159)
T ss_dssp             CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred             CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence            679999999999999999999752     1    2234556779999999999999999987678999999999999999


Q ss_pred             EcCCCcEEEEEecCCchhHHHHHHHHHH-HHHHhhhhCC-----CCCCC--------CcccchhHHHHHHHHHHhhh
Q 032406           73 QSLTGTKFFVVCEPGTQHMESLLKVIYE-LYTDYVLKNP-----FYEME--------MPIRCELFDINLSQAVQKDR  135 (141)
Q Consensus        73 ~T~TgiKfvlitd~~~~~~~~~l~~iy~-~Yv~~v~~NP-----fy~~~--------~pI~s~~F~~~v~~~~~~~~  135 (141)
                      +|+||+||||+||+++++++++|++||+ +|||||+|||     ||.++        +||+|++|+.+|+++++++.
T Consensus        81 eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~  157 (159)
T 3cue_C           81 CTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMV  157 (159)
T ss_dssp             CCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC-
T ss_pred             EeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999996 9999999999     99999        99999999999999998864

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=100.00  E-value=5.4e-41  Score=258.98  Aligned_cols=105  Identities=56%  Similarity=1.016  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCchhHHHHHHHHHHHHHHhhhhCCC
Q 032406           32 DSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPF  111 (141)
Q Consensus        32 ~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~~~~~~l~~iy~~Yv~~v~~NPf  111 (141)
                      +.+.++|++|||++|+++++|.+++.|++++.|++|++|||+|+||+||||+||++++++|++|++||++|+|+|+||||
T Consensus       107 ~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~IyelYvd~V~kNPF  186 (219)
T 2j3t_D          107 EKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPF  186 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHHHHHHHHhccCCC
Confidence            45668999999999999999987778999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccchhHHHHHHHHHHhhhh
Q 032406          112 YEMEMPIRCELFDINLSQAVQKDRV  136 (141)
Q Consensus       112 y~~~~pI~s~~F~~~v~~~~~~~~~  136 (141)
                      |++|+||+|++|+++|+++++++..
T Consensus       187 Y~~~~pI~s~~Fd~~v~~l~~~~~~  211 (219)
T 2j3t_D          187 YSLEMPIRCELFDQNLKLALEVAEK  211 (219)
T ss_dssp             CCTTSCCCCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCccchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999854

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=100.00  E-value=5.6e-40  Score=239.20  Aligned_cols=134  Identities=17%  Similarity=0.358  Sum_probs=115.7

Q ss_pred             CccEEEEEEEeCCCceEEEeecCCCCCCCChhHHH-HH-HHHHHHHHHHHhhCCCCCCCCc-eEeecCcEEEEEEEcCCC
Q 032406            1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR-VA-SLWHSMHAISQQLSPTTGCSGI-ELLEADTFDLHCFQSLTG   77 (141)
Q Consensus         1 m~~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~-l~-~~l~sL~~i~~klsp~~~~~g~-~~~~t~~ykv~~y~T~Tg   77 (141)
                      |+.||+|+||||+|+|||+++|.+.++.+.+++.. ++ +++||+.++.++++|.++...+ .+..+++|++|||+|+||
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg   82 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   82 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence            55699999999999999999998765544455443 55 8899999999999876432222 445789999999999999


Q ss_pred             cEEEEEecCC-chhHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406           78 TKFFVVCEPG-TQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR  135 (141)
Q Consensus        78 iKfvlitd~~-~~~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~  135 (141)
                      +|||++||++ +++++++|++||++|+++|+ ||||++|+||+|+.|+++|+++++++.
T Consensus        83 ~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l  140 (142)
T 2j3w_A           83 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKHL  140 (142)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHHhc
Confidence            9999999995 88999999999999999998 999999999999999999999999874

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=99.89  E-value=9.7e-23  Score=150.54  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=84.8

Q ss_pred             EEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHH-HHHHHHHhhC-CCCCC--CCce-EeecCcEEEEEEE-cCCCcE
Q 032406            6 SLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWH-SMHAISQQLS-PTTGC--SGIE-LLEADTFDLHCFQ-SLTGTK   79 (141)
Q Consensus         6 ~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~-sL~~i~~kls-p~~~~--~g~~-~~~t~~ykv~~y~-T~TgiK   79 (141)
                      .+.||||++.|||.+.+.... .+.+++++...++| |||.++++.+ +....  .++. .+.++++++|||+ |+||+|
T Consensus        12 FVaIIg~~n~PLyI~~~~~~~-~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vK   90 (162)
T 3pr6_A           12 FVSLIDESDKPILIYVPNEAE-NEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLK   90 (162)
T ss_dssp             EEEEECTTSCEEEEECCC--------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCE
T ss_pred             EEEEECCCCceeEEEeCCCcc-ccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceE
Confidence            455999999999999986532 23355678888888 8999999984 22211  2333 5679999999998 999999


Q ss_pred             EEEEecCC------c--hhHHHHHHHHHHHHHHhhhhCCCCCCCCc
Q 032406           80 FFVVCEPG------T--QHMESLLKVIYELYTDYVLKNPFYEMEMP  117 (141)
Q Consensus        80 fvlitd~~------~--~~~~~~l~~iy~~Yv~~v~~NPfy~~~~p  117 (141)
                      ||+++|.+      +  .++|++|+++|++|++.+ +||||.+++.
T Consensus        91 fVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l-~NPFy~~~d~  135 (162)
T 3pr6_A           91 IVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVK-CNPLLVSGDE  135 (162)
T ss_dssp             EEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHH-TCTTGGGSCH
T ss_pred             EEEEEccCCcccccchHHHHHHHHHHHHHHHHHHh-cCCCCCCCch
Confidence            99999863      3  699999999999999966 5999999843

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=97.84  E-value=0.00059  Score=51.47  Aligned_cols=128  Identities=11%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             CccEEEEEEEeCCCce-EE-EeecCCCCCCCChhHHHH-HHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCC
Q 032406            1 MAAIYSLYIINKSGGL-IF-YKDYGSAGRMDTNDSLRV-ASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTG   77 (141)
Q Consensus         1 m~~i~~~~Ii~r~g~~-iy-~~~~~~~~~~~~~~~~~l-~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~Tg   77 (141)
                      ||.||++.|+.+++.+ +. ...+.-+ ..+-=+.... -.+-+..+.+++++.|.    .-.++..+.|.+|+|....|
T Consensus         1 ~mk~~~~~v~~~~~~~~~~l~~~~dls-sf~~f~r~sv~ef~~f~~r~il~r~~~~----~r~s~~~~~y~fH~y~~~~g   75 (199)
T 3kyq_A            1 LMKLYSLSVFYKGEPKAVLLKAAYDVS-SFSFFQRSSVQEFMTFTSQLIVERSAKG----SRASVKEQEYLCHVYVRSDS   75 (199)
T ss_dssp             CCCEEEEEEEEECSSCEEEEEEEECCT-TSCTTTHHHHHHHHHHHHHHHHHTSCTT----EEEEEECSSEEEEEEECTTS
T ss_pred             CceEEEEEEEEcCCCCceEEeeecccc-cccceehHhHHHHHHHHHHHHHhcCCCC----CeEEEEeCCEEEEEEEecCC
Confidence            8999999999887653 32 2223211 1111111111 23446778888887663    23467889999999999999


Q ss_pred             cEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCC-CCCCCcccchhHHHHHHHHHHhhhhh
Q 032406           78 TKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPF-YEMEMPIRCELFDINLSQAVQKDRVA  137 (141)
Q Consensus        78 iKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPf-y~~~~pI~s~~F~~~v~~~~~~~~~~  137 (141)
                      +-+++++|..-+  -.-.+|++|.+.|....-.+-. .....|.   .| ..+++++++|++|
T Consensus        76 l~yl~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~---~f-~~l~~~m~~Y~dp  134 (199)
T 3kyq_A           76 LAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI---HY-TALDGHLSRYQNP  134 (199)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC---CC-CTHHHHHHHTTSG
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc---cc-HHHHHHHHHhCCc
Confidence            999999999855  3446889998777663321111 0111223   34 4567777778764

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=97.33  E-value=0.012  Score=41.94  Aligned_cols=129  Identities=12%  Similarity=0.085  Sum_probs=74.3

Q ss_pred             CccEEEEEEEeCCC-ceEEEeecCCCCCCCChhHHHH-HHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCc
Q 032406            1 MAAIYSLYIINKSG-GLIFYKDYGSAGRMDTNDSLRV-ASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGT   78 (141)
Q Consensus         1 m~~i~~~~Ii~r~g-~~iy~~~~~~~~~~~~~~~~~l-~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~Tgi   78 (141)
                      ||.|+++.|+..++ .++.......-+..+--+.... -.+-+-.+.+++++.+.    .-.++..++|.+|++....|+
T Consensus         4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~----~R~sv~~~~y~fH~~~~~~gl   79 (144)
T 3bw6_A            4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG----QRQSIEEGNYIGHVYARSEGI   79 (144)
T ss_dssp             CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT----EEEEEEETTEEEEEEECTTSE
T ss_pred             EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC----ceEEEEeCCEEEEEEEecCCE
Confidence            35799998876543 2333332221111111011001 11234567778888652    235778899999999888999


Q ss_pred             EEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCccc---chhHHHHHHHHHHhhhhh
Q 032406           79 KFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMPIR---CELFDINLSQAVQKDRVA  137 (141)
Q Consensus        79 Kfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~---s~~F~~~v~~~~~~~~~~  137 (141)
                      =+++++|..-+  -.=.+|++|.+-|....   |-.......+   +-.| ..+++.+++|++|
T Consensus        80 ~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y---~~~~~~~~~~~~~~~~f-~~l~~~i~kYqdp  139 (144)
T 3bw6_A           80 CGVLITDKEYPVRPAYTLLNKILDEYLVAH---PKEEWADVTETNDALKM-KQLDTYISKYQDP  139 (144)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHHHHS---CGGGTTTCSSCCGGGCC-THHHHHHHHTSCC
T ss_pred             EEEEEECCCCChhHHHHHHHHHHHHHHHHc---cchhhhhcccccCCcch-HHHHHHHHHhCch
Confidence            99999998755  33468888887777632   2110111011   2344 5777777778765

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.95  E-value=0.048  Score=40.40  Aligned_cols=92  Identities=14%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             HHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCccc
Q 032406           42 SMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMPIR  119 (141)
Q Consensus        42 sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~  119 (141)
                      -...+.+++.+..  .+-.++..++|.+| |....|+-+++++|..-+  -.-.+|++|.+.|....- +-.-....|..
T Consensus        37 ~a~~il~ki~~~~--~~r~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~-~~~~~~~~~~~  112 (196)
T 2nut_C           37 QAKQLFRKLNEQS--PTRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHG-KKVPTVSRPYS  112 (196)
T ss_dssp             HHHHHHHHCCTTS--CSEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT-TTTTTCCSTTT
T ss_pred             HHHHHHHhcCCCC--CCeEEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhcc-chhccccCCCc
Confidence            4566777786632  23346788999999 888999999999998855  444789999877776331 21111123555


Q ss_pred             chhHHHHHHHHHHhhhhh
Q 032406          120 CELFDINLSQAVQKDRVA  137 (141)
Q Consensus       120 s~~F~~~v~~~~~~~~~~  137 (141)
                      -..|+..+.+.++.|+.|
T Consensus       113 ~~~f~~~l~~~~~~y~~~  130 (196)
T 2nut_C          113 FIEFDTFIQKTKKLYIDS  130 (196)
T ss_dssp             TGGGHHHHHHHHTTTSCC
T ss_pred             hHHHHHHHHHHHHHhcCc
Confidence            569999999999999764

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=96.13  E-value=0.19  Score=35.20  Aligned_cols=92  Identities=15%  Similarity=0.264  Sum_probs=56.5

Q ss_pred             cEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCC-CCCCceEeecCcEEEEEEEcCCCcEEE
Q 032406            3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTT-GCSGIELLEADTFDLHCFQSLTGTKFF   81 (141)
Q Consensus         3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~-~~~g~~~~~t~~ykv~~y~T~TgiKfv   81 (141)
                      ||-+++|+|++|+++..+.|...   +.+....+..-++      .++...+ ....+  +..+++++ .|..-.++-|+
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~---~~~~~~~~~~~f~------~~v~~~~~~~~~~--~~~~~~~~-vy~~~~~Lyfv   68 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQF---DDDEKQKLIEEVH------AVVTVRDAKHTNF--VEFRNFKI-IYRRYAGLYFC   68 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCC---CHHHHHHHHHHHH------HHHHTCCTTSCSE--EEETTEEE-EEEEETTEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCC---ChhhhHHHHHHHH------HHHhcCCCCCCCE--EEECCEEE-EEEEECCEEEE
Confidence            57899999999999999999641   1122232333333      2222111 12233  34566654 56777899999


Q ss_pred             EEecCCch--hHHHHHHHHHHHHHHhh
Q 032406           82 VVCEPGTQ--HMESLLKVIYELYTDYV  106 (141)
Q Consensus        82 litd~~~~--~~~~~l~~iy~~Yv~~v  106 (141)
                      ++++.+..  .+-++++.+.++.-+|.
T Consensus        69 ~~~~~~~N~l~~le~L~~~ve~l~~yf   95 (142)
T 2vgl_S           69 ICVDVNDNNLAYLEAIHNFVEVLNEYF   95 (142)
T ss_dssp             EEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99998755  33366777666666653

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.04  E-value=0.19  Score=36.00  Aligned_cols=91  Identities=14%  Similarity=0.196  Sum_probs=55.4

Q ss_pred             cEEEEEEEeCCCceEEEeecCCCCCCCChh-HHHHHHHHHHHHHHHHhhCCCC-CCCCceEeecCcEEEEEEEcCCCcEE
Q 032406            3 AIYSLYIINKSGGLIFYKDYGSAGRMDTND-SLRVASLWHSMHAISQQLSPTT-GCSGIELLEADTFDLHCFQSLTGTKF   80 (141)
Q Consensus         3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~-~~~l~~~l~sL~~i~~klsp~~-~~~g~~~~~t~~ykv~~y~T~TgiKf   80 (141)
                      ||-+++|+|++|.++..+.|...    ... ...+..-++      +++...+ ....+  +..+++++ .|..-.++-|
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~----~~~~~~~~~~~~~------~~i~~~~~~~~~~--i~~~~~~~-vy~~~~~Lyf   67 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLAT----SDKERKKMVRELM------QVVLARKPKMCSF--LEWRDLKV-VYKRYASLYF   67 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCC----CHHHHHHHHHHHH------HHHHTSCSSSCSE--EEETTEEE-EEEEETTEEE
T ss_pred             CeEEEEEECCCCCEEEEEeCCCC----CHHHHHHHHHHHH------HHHhccCCCCCCe--EEECCEEE-EEEEECCEEE
Confidence            57899999999999999999652    222 222332222      2222211 12233  34566665 5566779999


Q ss_pred             EEEecCCch--hHHHHHHHHHHHHHHhh
Q 032406           81 FVVCEPGTQ--HMESLLKVIYELYTDYV  106 (141)
Q Consensus        81 vlitd~~~~--~~~~~l~~iy~~Yv~~v  106 (141)
                      +++++.+..  .+-++++.+.++.-+|.
T Consensus        68 v~~~~~~~Nel~~le~L~~~vevl~~yf   95 (158)
T 1w63_Q           68 CCAIEGQDNELITLELIHRYVELLDKYF   95 (158)
T ss_dssp             EEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999998754  33356666666555543

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=93.55  E-value=0.89  Score=33.37  Aligned_cols=87  Identities=8%  Similarity=0.131  Sum_probs=58.5

Q ss_pred             HHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCc-ccch
Q 032406           45 AISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMP-IRCE  121 (141)
Q Consensus        45 ~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~p-I~s~  121 (141)
                      .+.+++.|.   .+-.++..++|.+| |..-.|+-+++++|..-+  -.-.+|.+|.+.|....- +.- ....| -.+.
T Consensus        32 ~iL~kip~~---~~k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~-~~~-~~~~~~~~~~  105 (189)
T 4b93_A           32 QILAKIPSE---NNKLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG-SRA-QTALPYAMNS  105 (189)
T ss_dssp             HHHTTCCSS---SEEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHG-GGG-GTCCTTTTHH
T ss_pred             HHHHhCCCC---CCeEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhcc-ccc-cccCCccccc
Confidence            345566443   23457888999999 778899999999998754  344688888866655321 111 11122 2346


Q ss_pred             hHHHHHHHHHHhhhhh
Q 032406          122 LFDINLSQAVQKDRVA  137 (141)
Q Consensus       122 ~F~~~v~~~~~~~~~~  137 (141)
                      .|...+++.++.|+.+
T Consensus       106 ~f~~~l~~~~~~y~d~  121 (189)
T 4b93_A          106 EFSSVLAAQLKHHSEN  121 (189)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             hhhHHHHHHHHhhhcc
Confidence            7999999999998763

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=93.32  E-value=1.5  Score=36.05  Aligned_cols=91  Identities=11%  Similarity=0.151  Sum_probs=55.8

Q ss_pred             cEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEE
Q 032406            3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFV   82 (141)
Q Consensus         3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvl   82 (141)
                      ||.+++|+|++|.++..+.|...    ....        .++.|...+........-..+.+++++ ..|....++-|++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~----~~~~--------~~~~f~~~v~~~~~~~~~~ii~~~~~~-~vy~~~~~Lyfv~   67 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDD----IGRN--------AVDAFRVNVIHARQQVRSPVTNIARTS-FFHVKRSNIWLAA   67 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSS----CCHH--------HHHHHHHHTTTCSSCCCCSEEEETTEE-EEEEEETTEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEecCCC----CChh--------HHHHHHHHHhccccCCCCCEEEECCEE-EEEEEECCEEEEE
Confidence            57799999999999999999642    1111        123444445432111111234456665 4557777899999


Q ss_pred             EecCCchh--HHHHHHHHHHHHHHhh
Q 032406           83 VCEPGTQH--MESLLKVIYELYTDYV  106 (141)
Q Consensus        83 itd~~~~~--~~~~l~~iy~~Yv~~v  106 (141)
                      +++.+...  +-++|+.+.++.-+|.
T Consensus        68 ~~~~~~n~l~~le~L~~~v~vl~~yf   93 (435)
T 2vgl_M           68 VTKQNVNAAMVFEFLYKMCDVMAAYF   93 (435)
T ss_dssp             EESSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99987543  3356666666555543

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=93.10  E-value=0.86  Score=33.09  Aligned_cols=58  Identities=7%  Similarity=0.135  Sum_probs=44.0

Q ss_pred             HHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHH
Q 032406           43 MHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTD  104 (141)
Q Consensus        43 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~  104 (141)
                      .+.+.+++.+.   .+-.++..++|.+|++. -.|+-|++++|..-+  -.-.+|++|.+.|.+
T Consensus        72 ak~ll~kl~~~---~~r~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~  131 (169)
T 2vx8_A           72 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQT  131 (169)
T ss_dssp             HHHHHTTSCSS---CEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCC---CCceEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHHHHHHH
Confidence            46667777662   23456778999999998 469999999998754  455788888877776

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=92.36  E-value=0.34  Score=39.80  Aligned_cols=93  Identities=11%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             ccEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEE
Q 032406            2 AAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFF   81 (141)
Q Consensus         2 ~~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfv   81 (141)
                      |||.+++|+|++|.++..+.|......+.-+      .++.+  +..+-.+. ....+  +.+++++ ..|....++-|+
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~------~f~~~--v~~~~~~~-~~~~~--i~~~~~~-~vy~~~~~Lyfv   68 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVE------HFMPI--LMEKEEEG-MLSPI--LAHGGVR-FMWIKHNNLYLV   68 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCTTTTHH------HHHHH--HHHHHHTS-CCCSE--EEETTEE-EEEEEETTEEEE
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCChHHHH------HHHHH--HhhccccC-CCCCE--EEECCEE-EEEEEECCEEEE
Confidence            4789999999999999999997531111111      11111  00110101 11222  3455665 445677889999


Q ss_pred             EEecCCch--hHHHHHHHHHHHHHHhh
Q 032406           82 VVCEPGTQ--HMESLLKVIYELYTDYV  106 (141)
Q Consensus        82 litd~~~~--~~~~~l~~iy~~Yv~~v  106 (141)
                      ++++.+..  .+-++|+.+.++.-+|.
T Consensus        69 ~~~~~~~n~l~~le~L~~~v~~l~~yf   95 (423)
T 1w63_M           69 ATSKKNACVSLVFSFLYKVVQVFSEYF   95 (423)
T ss_dssp             EEESSCCCTHHHHHHHHHHHHHHHHHS
T ss_pred             EEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99998754  33356666666666644

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=90.36  E-value=3.6  Score=29.18  Aligned_cols=91  Identities=13%  Similarity=0.246  Sum_probs=56.1

Q ss_pred             cEEEEEEEeCCCceEEEeecCCCCCCCChhHHHHHHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEE
Q 032406            3 AIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFV   82 (141)
Q Consensus         3 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~l~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvl   82 (141)
                      ||..++|+|++|+++..+-|... -.+.+++..+-.-++.+      ++..  .+.+  +..+++++ .|.--.++-|++
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~-~~~~~~~~~~e~~i~~~------~~r~--~~~i--~~~~~~~~-vy~~~~~Lyfv~   79 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDT-YPSVKEQKAFEKNIFNK------THRT--DSEI--ALLEGLTV-VYKSSIDLYFYV   79 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSS-SCSHHHHHHHHHHHHHH------HSSC--CCCE--EEETTEEE-EEEECSSCEEEE
T ss_pred             HheEEEEECCCCCEEEEEeCCCC-CCCHHHHHHHHHHHHHH------HhCC--CCCE--EEECCEEE-EEEEECCEEEEE
Confidence            78999999999999999988631 01112222222223332      2211  1223  33466665 667777899999


Q ss_pred             EecCCch--hHHHHHHHHHHHHHHh
Q 032406           83 VCEPGTQ--HMESLLKVIYELYTDY  105 (141)
Q Consensus        83 itd~~~~--~~~~~l~~iy~~Yv~~  105 (141)
                      +++.+..  -+-++++.+.++.-+|
T Consensus        80 ~~~~~eNel~ile~L~~~ve~l~~y  104 (153)
T 3tjz_C           80 IGSSYENELMLMTVLNCLFDSLSQM  104 (153)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCChHHHHHHHHHHHHHHHHH
Confidence            9998754  4446777777666664

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=80.73  E-value=14  Score=26.73  Aligned_cols=88  Identities=8%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             HHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCcc-c
Q 032406           43 MHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMPI-R  119 (141)
Q Consensus        43 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI-~  119 (141)
                      .+.+.+++.+.   .+-.++..++|.+|+.. -.|+-+++++|...+  -.-.||++|.+.|...- .+- +....|- -
T Consensus        82 a~~iL~kip~~---~~r~t~~~~~y~fHyl~-~dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~y-g~~-~~ta~pya~  155 (173)
T 4afi_A           82 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSR-AQTALPYAM  155 (173)
T ss_dssp             HHHHHTTSCSS---SEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-GGG-GGTCCTTTT
T ss_pred             HHHHHHhCCCC---CCeEEEEECCEEEEEEE-ECCEEEEEEECCccChhHHHHHHHHHHHHHHHHh-chh-hhhccCcch
Confidence            34455666553   23346778999999887 589999999998854  34467888886665522 111 1111221 1


Q ss_pred             chhHHHHHHHHHHhhhh
Q 032406          120 CELFDINLSQAVQKDRV  136 (141)
Q Consensus       120 s~~F~~~v~~~~~~~~~  136 (141)
                      +..|...|++.++.|.+
T Consensus       156 ~~eF~~~L~~~M~~yn~  172 (173)
T 4afi_A          156 NSEFSSVLAAQLKHHSE  172 (173)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            45799999999888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	1e-32

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (275), Expect = 1e-32
 Identities = 23/137 (16%), Positives = 60/137 (43%), Gaps = 5/137 (3%)

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVAS--LWHSMHAISQQLSPTTGCSG 58
           M+  +   I+      +F  ++   G+ ++ D  R  +  + H+   +  +    +    
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  IELLEA-DTFDLHCFQSLTGTKFFVVCEPGTQ-HMESLLKVIYELYTDYVLKNPFYEMEM 116
           ++ ++  + + +  F +    +F ++ +   +  +++    +Y+LY  + + NPFYE   
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNS 119

Query: 117 PIRCELFDINLSQAVQK 133
           PIR   FD  +    +K
Sbjct: 120 PIRSSAFDRKVQFLGKK 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	97.69
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	96.88
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	96.22
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	87.75

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-39  Score=231.77  Aligned_cols=134  Identities=16%  Similarity=0.341  Sum_probs=117.8

Q ss_pred             CccEEEEEEEeCCCceEEEeecCCCCCCCChh--HHHHHHHHHHHHHHHHhhCCCCCCCCceEe-ecCcEEEEEEEcCCC
Q 032406            1 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTND--SLRVASLWHSMHAISQQLSPTTGCSGIELL-EADTFDLHCFQSLTG   77 (141)
Q Consensus         1 m~~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~--~~~l~~~l~sL~~i~~klsp~~~~~g~~~~-~t~~ykv~~y~T~Tg   77 (141)
                      |+..|+|+||||+|+|||+++|...++...++  .+...+++||..++.++++|..++.++.++ ++++|+||||+|+||
T Consensus         1 ~~~~y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg   80 (140)
T d2j3wa1           1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   80 (140)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             CccEEEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCC
Confidence            78899999999999999999998765444433  344678899888888888887777777665 789999999999999


Q ss_pred             cEEEEEecCCch-hHHHHHHHHHHHHHHhhhhCCCCCCCCcccchhHHHHHHHHHHhhh
Q 032406           78 TKFFVVCEPGTQ-HMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDR  135 (141)
Q Consensus        78 iKfvlitd~~~~-~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s~~F~~~v~~~~~~~~  135 (141)
                      +||||+||++.+ .++.+|+++|++|+++|+ ||||.+|+||+|+.|+++|++++++|-
T Consensus        81 ~Kfvl~td~~~~~~i~~~~~~v~~lYv~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l  138 (140)
T d2j3wa1          81 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKHL  138 (140)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCcchHHHHHHHHHHHHHHHHhh-CccCCCCCcccCHHHHHHHHHHHHHHc
Confidence            999999999754 689999999999999998 999999999999999999999999984

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=0.00025  Score=48.88  Aligned_cols=130  Identities=11%  Similarity=0.073  Sum_probs=79.8

Q ss_pred             ccEEEEEEEeCC-CceEEEeecCCCCCCCChhHHHH-HHHHHHHHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcE
Q 032406            2 AAIYSLYIINKS-GGLIFYKDYGSAGRMDTNDSLRV-ASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTK   79 (141)
Q Consensus         2 ~~i~~~~Ii~r~-g~~iy~~~~~~~~~~~~~~~~~l-~~~l~sL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiK   79 (141)
                      |+||++.|+.+. ..|+....-..-+..+-=+...+ -.+.+..+.++++..+.    ...++..++|.+|+|....|+=
T Consensus         1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g----~r~sv~~~~y~~h~yv~~~gl~   76 (140)
T d1ioua_           1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG----ERQSIEEGNYIGHVYARSEGIC   76 (140)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSS----SEEEEEETTEEEEEECCSSSCE
T ss_pred             CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCC----ceEEEEcCCeEEEEEEeeCCEE
Confidence            678899998764 35665432211111111111112 23456788888888663    2457788999999999999999


Q ss_pred             EEEEecCCch--hHHHHHHHHHHHHHHhhhhCCC--CCCCCcccchhHHHHHHHHHHhhhhhh
Q 032406           80 FFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPF--YEMEMPIRCELFDINLSQAVQKDRVAM  138 (141)
Q Consensus        80 fvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPf--y~~~~pI~s~~F~~~v~~~~~~~~~~~  138 (141)
                      +++++|..-+  -.=.+|++|.+.|...   .|-  +..-..-.++.+-..++.++++|+.|.
T Consensus        77 ~l~i~d~~Yp~r~AF~~L~~i~~eF~~~---~~~~~~~~i~~~~~~~~~~~l~~~l~kYQdP~  136 (140)
T d1ioua_          77 GVLITDKQYPVRPAYTLLNKILDEYLVA---HPKEEWADVTETNDALKMKQLDTYISKYQDPS  136 (140)
T ss_dssp             EEEEBCTTSCHHHHHHHHHHHHHHHHHS---SCHHHHTTCSCCCTTTSCHHHHHHHHHTTSSC
T ss_pred             EEEEECCCcchHHHHHHHHHHHHHHHHH---cChHhhhhhhccccccchHHHHHHHHHhCchh
Confidence            9999999744  3335788888766652   221  110111123344466788888898864

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.75  E-value=2.4  Score=27.54  Aligned_cols=88  Identities=15%  Similarity=0.196  Sum_probs=56.9

Q ss_pred             HHHHHHhhCCCCCCCCceEeecCcEEEEEEEcCCCcEEEEEecCCch--hHHHHHHHHHHHHHHhhhhCCCCCCCCcccc
Q 032406           43 MHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQ--HMESLLKVIYELYTDYVLKNPFYEMEMPIRC  120 (141)
Q Consensus        43 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKfvlitd~~~~--~~~~~l~~iy~~Yv~~v~~NPfy~~~~pI~s  120 (141)
                      ++.+.++++|..+  .-.++..++|.+| |..-.|+-|++++|..-+  -.=.+|++|-+.|...- .+=.-....|..=
T Consensus        37 ak~ll~kl~~~~~--~r~s~~~~~y~fH-y~~~~gi~yl~i~d~~~~~~laF~fLeei~~eF~~~y-~~~i~~~~rpy~F  112 (127)
T d1ifqa_          37 AKQLFRKLNEQSP--TRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH-GKKVPTVSRPYSF  112 (127)
T ss_dssp             HHHHHTTCCTTSC--SEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-TTTTTTCCSTTTT
T ss_pred             HHHHHHhCCCCCC--CcEEEEECCEEEE-EEecCCeEEEEEEccccCchhHHHHHHHHHHHHHHhh-hhhhhcccCCcch
Confidence            4556677776532  3346889999999 566799999999998854  33468888886665522 1212222235444


Q ss_pred             hhHHHHHHHHHHhh
Q 032406          121 ELFDINLSQAVQKD  134 (141)
Q Consensus       121 ~~F~~~v~~~~~~~  134 (141)
                      ..||+-+.+.-+.|
T Consensus       113 i~Fd~~iqk~k~~y  126 (127)
T d1ifqa_         113 IEFDTFIQKTKKLY  126 (127)
T ss_dssp             GGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            56888777765554