Citrus Sinensis ID: 032409

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDQSANHNSSKSKSSGKSRPAESQTKAVKMSPPPKDDDDSGMKKRKMMNRAPPVEHAGITMALTNSGSAAISVRNGSTANV
Secondary Structure (PSIPRED)
cccccHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHcHHEEEEcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
MQEKDWLSLVAVHSDSWLLAVAFYFGarfgfgknERKKLFQMINDLPTIFEvvtgnakqpkdqsanhnsskskssgksrpaesqtkavkmspppkddddsgmkkrkmmnrappvehagITMALTNSgsaaisvrngstanv
Flexible Loop (DISEMBL)
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGnakqpkdqsanhnsskskssgksrpaesqtkavkmspppkddddsgmKKRKMMNRAPPVEHAGITMALTnsgsaaisvrngstanv
Low Complexity Region (SEG)
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDQSANHNsskskssgksRPAESQTKAVkmspppkddddsgmkkRKMMNRAPPVEHAGITMALTNSGSAAISVRNGSTANV
Disordered region (IsUnstruct)
*****WLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVT***************************************************************************************
Disordered Region (DISOPRED)
***KDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFE**********************************************************RAPPVEHAGITMALTNSGSAAISV*NG*****
Disordered Region (DISEMBL)
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGN***********************************************KRKMMNRAPPVEHAGITMALTNSGSAAISV********
Disordered Region (DISPRO)
**EKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGN*********************************************MKKRKMMNRAPPVEHAGITMALTNSGSAAISVRNG*****
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQPKDQSANHNSSKSKSSGKSRPAESQTKAVKMSPPPKDDDDSGMKKRKMMNRAPPVEHAGITMALTNSGSAAISVRNGSTANV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q40359	257	PHD finger protein Alfin1	N/A	no	0.673	0.369	0.795	3e-39
Q8LA16	252	PHD finger protein ALFIN-	yes	no	0.673	0.376	0.854	7e-39
Q8S8M9	256	PHD finger protein ALFIN-	no	no	0.673	0.371	0.804	3e-38
Q2R837	254	PHD finger protein ALFIN-	yes	no	0.666	0.370	0.639	1e-27
B8BJV8	254	PHD finger protein ALFIN-	N/A	no	0.666	0.370	0.639	1e-27
Q9M2B4	250	PHD finger protein ALFIN-	no	no	0.631	0.356	0.611	3e-26
Q5XEM9	260	PHD finger protein ALFIN-	no	no	0.602	0.326	0.625	4e-26
Q6Z7F4	267	PHD finger protein ALFIN-	no	no	0.709	0.374	0.574	9e-25
B8ADZ3	267	PHD finger protein ALFIN-	N/A	no	0.709	0.374	0.574	9e-25
Q60DW3	258	PHD finger protein ALFIN-	no	no	0.567	0.310	0.666	9e-25

>sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKN+RK+LFQMINDLPT+FE+ TG AKQ 
Sbjct: 86  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQS 145

Query: 61  KDQSANHN---SSKSKSSGKSRPAESQTKAVKMSPPPK 95
           KDQ   HN   +SK KSSGKSR +ESQTK VKMS P K
Sbjct: 146 KDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVK 183

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes (By similarity). Transcriptional regulator that binds specifically to DNA sequences 5'-GNGGTG-3' or 5'-GTGGNG-3', including promoter elements of the salt-inducible PRP2 gene. Plays a role in salinity tolerance.
Medicago sativa (taxid: 3879)

>sp|Q8LA16|ALFL7_ARATH PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1

 Score =  159 bits (401), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/96 (85%), Positives = 89/96 (92%), Gaps = 1/96 (1%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct: 85  MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 144

Query: 61  KDQSANHNSSKSKSSGKS-RPAESQTKAVKMSPPPK 95
           KDQSANHNSS+SKSSG   R +ES TKA KMSPPP+
Sbjct: 145 KDQSANHNSSRSKSSGGKPRHSESHTKASKMSPPPR 180

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8M9|ALFL6_ARATH PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana GN=AL6 PE=2 SV=1

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/97 (80%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWLL+VAFYFGARFGFGKNERK+LFQMIN+LPTIFEVV+GNAKQ 
Sbjct: 85  MQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNAKQS 144

Query: 61  KDQSANHNSSKSKSSG-KSRPAESQTKAVKM-SPPPK 95
           KD S N+N+SKSK SG KSR +ES +K  KM SPPPK
Sbjct: 145 KDLSVNNNNSKSKPSGVKSRQSESLSKVAKMSSPPPK 181

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R837|ALFL8_ORYSJ PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 70/97 (72%), Gaps = 3/97 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           M EKDWLSLVAVHSD+WLLAVAFYFGARFGF K  RK+LF MIN+LPTI+EVVTG AK+ 
Sbjct: 83  MDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMINNLPTIYEVVTGTAKKQ 142

Query: 61  KDQSANHNSSKSKSSGK--SRPAESQTKAVKMSPPPK 95
             +     S KS  SG   SR  E  ++  KM PPPK
Sbjct: 143 SKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKM-PPPK 178

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BJV8|ALFL8_ORYSI PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica GN=OsI_35671 PE=3 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 70/97 (72%), Gaps = 3/97 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           M EKDWLSLVAVHSD+WLLAVAFYFGARFGF K  RK+LF MIN+LPTI+EVVTG AK+ 
Sbjct: 83  MDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKESRKRLFSMINNLPTIYEVVTGTAKKQ 142

Query: 61  KDQSANHNSSKSKSSGK--SRPAESQTKAVKMSPPPK 95
             +     S KS  SG   SR  E  ++  KM PPPK
Sbjct: 143 SKEKTPKTSGKSNKSGTKPSRQPEPNSRGPKM-PPPK 178

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 71/90 (78%), Gaps = 1/90 (1%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK-Q 59
           + EK+WLSLVA+HSD+WLL+V+FYFG+RF F K ERK+LF MIND+PTIFEVVTG AK +
Sbjct: 86  LSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAK 145

Query: 60  PKDQSANHNSSKSKSSGKSRPAESQTKAVK 89
            K  +AN N +KSKS+ K R +E ++   K
Sbjct: 146 DKSSAANQNGNKSKSNSKVRTSEGKSSKTK 175

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 74/88 (84%), Gaps = 3/88 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQ 59
           MQE++WLSLVAVHSD+WLL+V+FYFG+RFGF + +RK+LF MIN++PT++EVVTGNA KQ
Sbjct: 86  MQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRADRKRLFSMINEVPTVYEVVTGNAEKQ 145

Query: 60  PKDQ--SANHNSSKSKSSGKSRPAESQT 85
            K+   SAN N ++SKS+ K R  ES++
Sbjct: 146 TKEMPSSANQNGNRSKSNSKMRGLESKS 173

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z7F4|ALFL7_ORYSJ PHD finger protein ALFIN-LIKE 7 OS=Oryza sativa subsp. japonica GN=Os02g0564100 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 1/101 (0%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           M EKDWLSLVAVHSD+WLL+VAFYFGARFGF K  R++LF MIN LPT++EVVTG AK+ 
Sbjct: 102 MIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTMINGLPTVYEVVTGIAKKQ 161

Query: 61  KDQSANHNSSKSKSSGKSRPAESQTKAVKMSPPPKDDDDSG 101
              S   + S   +   S+ + S +K  K  P PKD++DSG
Sbjct: 162 TKVSNGSSKSNKSNPKPSKQSNSNSKPAK-PPQPKDEEDSG 201

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8ADZ3|ALFL7_ORYSI PHD finger protein ALFIN-LIKE 7 OS=Oryza sativa subsp. indica GN=OsI_07694 PE=3 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 72/101 (71%), Gaps = 1/101 (0%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           M EKDWLSLVAVHSD+WLL+VAFYFGARFGF K  R++LF MIN LPT++EVVTG AK+ 
Sbjct: 102 MIEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKEARRRLFTMINGLPTVYEVVTGIAKKQ 161

Query: 61  KDQSANHNSSKSKSSGKSRPAESQTKAVKMSPPPKDDDDSG 101
              S   + S   +   S+ + S +K  K  P PKD++DSG
Sbjct: 162 TKVSNGSSKSNKSNPKPSKQSNSNSKPAK-PPQPKDEEDSG 201

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q60DW3|ALFL5_ORYSJ PHD finger protein ALFIN-LIKE 5 OS=Oryza sativa subsp. japonica GN=Os05g0419100 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 1/81 (1%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQ 59
           M EKDWL+LVAVHSDSWLLAVAFYF ARFGF K  R++LF MIN+LPTIFEVVTG A KQ
Sbjct: 87  MNEKDWLALVAVHSDSWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVVTGAAKKQ 146

Query: 60  PKDQSANHNSSKSKSSGKSRP 80
            K+++ N  +  +K S K +P
Sbjct: 147 TKEKAPNSTNKPNKPSSKMQP 167

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
333696835	253	PHD finger family protein [Corylus heter	0.673	0.375	0.876	3e-41
224070730	254	predicted protein [Populus trichocarpa]	0.673	0.374	0.867	2e-40
224129826	254	predicted protein [Populus trichocarpa]	0.673	0.374	0.836	2e-39
351726166	252	PHD5 [Glycine max] gi|115394656|gb|ABI97	0.673	0.376	0.833	9e-39
255556677	367	ATP synthase alpha subunit mitochondrial	0.673	0.258	0.826	3e-38
356564162	253	PREDICTED: PHD finger protein Alfin1-lik	0.673	0.375	0.824	7e-38
225465298	253	PREDICTED: PHD finger protein Alfin1 [Vi	0.709	0.395	0.796	9e-38
297849860	252	PHD finger family protein [Arabidopsis l	0.673	0.376	0.812	1e-37
116563479	264	PHD5 [Medicago truncatula]	0.673	0.359	0.795	2e-37
75220965	257	RecName: Full=PHD finger protein Alfin1	0.673	0.369	0.795	2e-37

>gi|333696835|gb|AEF79998.1| PHD finger family protein [Corylus heterophylla]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/97 (87%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGN KQ 
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKQS 144

Query: 61  KDQSANHNSSKSKSSGK--SRPAESQTKAVKMSPPPK 95
           KDQSA HNSSKSK SGK  SR +E Q K VKMSPPPK
Sbjct: 145 KDQSATHNSSKSKLSGKTQSRQSEPQPKGVKMSPPPK 181

Source: Corylus heterophylla

Species: Corylus heterophylla

Genus: Corylus

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070730|ref|XP_002303216.1| predicted protein [Populus trichocarpa] gi|222840648|gb|EEE78195.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/98 (86%), Positives = 90/98 (91%), Gaps = 3/98 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMIN+LPTIFEVV+GN KQP
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNVKQP 144

Query: 61  KDQSANHNSS-KSKSSGK--SRPAESQTKAVKMSPPPK 95
           KDQSA HN+S KSKSSGK  SR  ESQTKAVK+S PPK
Sbjct: 145 KDQSATHNNSGKSKSSGKMQSRQPESQTKAVKVSAPPK 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129826|ref|XP_002328812.1| predicted protein [Populus trichocarpa] gi|222839110|gb|EEE77461.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 89/98 (90%), Gaps = 3/98 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMIN+LPTIFE V+GN KQP
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIFEAVSGNVKQP 144

Query: 61  KDQSANHNSS-KSKSSGK--SRPAESQTKAVKMSPPPK 95
           KDQ+A HN+S KSKSSGK  SR  ESQTKA+K+S PPK
Sbjct: 145 KDQTATHNNSGKSKSSGKMQSRQPESQTKAIKVSAPPK 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726166|ref|NP_001237885.1| PHD5 [Glycine max] gi|115394656|gb|ABI97244.1| PHD5 [Glycine max]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 80/96 (83%), Positives = 86/96 (89%), Gaps = 1/96 (1%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMINDLPTIFE+VTG+AKQ 
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSAKQS 144

Query: 61  KDQSANHNS-SKSKSSGKSRPAESQTKAVKMSPPPK 95
           KDQ A HN+ SK KSSGKS  +ESQ K +KMS PPK
Sbjct: 145 KDQPAAHNNGSKCKSSGKSHQSESQAKGMKMSAPPK 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556677|ref|XP_002519372.1| ATP synthase alpha subunit mitochondrial, putative [Ricinus communis] gi|223541439|gb|EEF42989.1| ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/98 (82%), Positives = 87/98 (88%), Gaps = 3/98 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMIN+LPTIFEVV+GN KQ 
Sbjct: 198 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNVKQA 257

Query: 61  KDQSANHNSS-KSKSSGK--SRPAESQTKAVKMSPPPK 95
           KDQSA HN+S KSKS+GK  SR  E  TKAVKM+PP K
Sbjct: 258 KDQSATHNNSGKSKSTGKMQSRQPEPPTKAVKMTPPAK 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564162|ref|XP_003550325.1| PREDICTED: PHD finger protein Alfin1-like isoform 1 [Glycine max]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERK+LFQMINDLPTIFE+VTG+A+Q 
Sbjct: 85  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSARQS 144

Query: 61  KDQSANHNS-SKSKSSGK-SRPAESQTKAVKMSPPPK 95
           KDQ A HN+ SK KSSGK SR +ESQ K +KMS PPK
Sbjct: 145 KDQPAAHNNGSKCKSSGKVSRQSESQAKGMKMSAPPK 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465298|ref|XP_002271574.1| PREDICTED: PHD finger protein Alfin1 [Vitis vinifera] gi|297739439|emb|CBI29621.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 91/103 (88%), Gaps = 3/103 (2%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGK+ERK+LFQMIN+LPTIFEVVTG  KQ 
Sbjct: 86  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKSERKRLFQMINELPTIFEVVTG-VKQQ 144

Query: 61  KDQSANH-NSSKSKSSGK-SRPAESQTKAVKMSPPPKDDDDSG 101
           +D S NH NS+KSKSSGK SR  E QTK VK+SPP K++D+SG
Sbjct: 145 RDMSGNHNNSNKSKSSGKMSRQPEPQTKGVKVSPPSKEEDESG 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849860|ref|XP_002892811.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297338653|gb|EFH69070.1| PHD finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/96 (81%), Positives = 86/96 (89%), Gaps = 1/96 (1%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct: 85  MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 144

Query: 61  KDQSANHN-SSKSKSSGKSRPAESQTKAVKMSPPPK 95
           KDQSANHN S    SSGK R +++ TKA KMSPPP+
Sbjct: 145 KDQSANHNSSRSKSSSGKPRHSDTHTKASKMSPPPR 180

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116563479|gb|ABJ99762.1| PHD5 [Medicago truncatula]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKN+RK+LFQMINDLPT+FE+ TG AKQ 
Sbjct: 83  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQS 142

Query: 61  KDQSANHN---SSKSKSSGKSRPAESQTKAVKMSPPPK 95
           KDQ   HN   +SK KSSGKSR +ESQTK VKMS P K
Sbjct: 143 KDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVK 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75220965|sp|Q40359.1|ALFIN_MEDSA RecName: Full=PHD finger protein Alfin1 gi|12651665|gb|AAA20093.2| Alfin-1 [Medicago sativa]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 84/98 (85%), Gaps = 3/98 (3%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
           MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKN+RK+LFQMINDLPT+FE+ TG AKQ 
Sbjct: 86  MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQS 145

Query: 61  KDQSANHN---SSKSKSSGKSRPAESQTKAVKMSPPPK 95
           KDQ   HN   +SK KSSGKSR +ESQTK VKMS P K
Sbjct: 146 KDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVK 183

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2012577	252	AL7 "AT1G14510" [Arabidopsis t	0.617	0.345	0.784	1.8e-32
UNIPROTKB|Q40359	257	ALFIN-1 "PHD finger protein Al	0.624	0.342	0.714	1e-29
TAIR|locus:2056281	256	AL6 "AT2G02470" [Arabidopsis t	0.609	0.335	0.724	9.1e-29
TAIR|locus:2179709	255	AL4 "AT5G26210" [Arabidopsis t	0.609	0.337	0.636	2.6e-24
TAIR|locus:2149867	260	AL5 "AT5G20510" [Arabidopsis t	0.602	0.326	0.579	1.6e-22
TAIR|locus:2099321	250	AL3 "AT3G42790" [Arabidopsis t	0.602	0.34	0.569	3.4e-22
TAIR|locus:2074663	246	AL2 "AT3G11200" [Arabidopsis t	0.595	0.341	0.551	4.4e-20
TAIR|locus:2169707	241	AL1 "AT5G05610" [Arabidopsis t	0.595	0.348	0.563	3.1e-19

TAIR|locus:2012577 AL7 "AT1G14510" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 69/88 (78%), Positives = 74/88 (84%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQEKDW+SLVAVHSDSWL++VAFYFGARFGFGKNERK+LFQMINDLPTIFEVVTGNAKQ 
Sbjct:    85 MQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNAKQS 144

Query:    61 KDQSANHNXXXXXXXXXX-RPAESQTKA 87
             KDQSANHN           R +ES TKA
Sbjct:   145 KDQSANHNSSRSKSSGGKPRHSESHTKA 172

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

UNIPROTKB|Q40359 ALFIN-1 "PHD finger protein Alfin1" [Medicago sativa (taxid:3879)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 65/91 (71%), Positives = 70/91 (76%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKN+RK+LFQMINDLPT+FE+ TG AKQ 
Sbjct:    86 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQS 145

Query:    61 KDQSANHNXXXXX---XXXXXRPAESQTKAV 88
             KDQ   HN             R +ESQTK V
Sbjct:   146 KDQLTAHNNGSNSKYKSSGKSRQSESQTKGV 176

GO:0003677 "DNA binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0071472 "cellular response to salt stress" evidence=IDA

TAIR|locus:2056281 AL6 "AT2G02470" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 63/87 (72%), Positives = 71/87 (81%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQEKDW+SLVAVHSDSWLL+VAFYFGARFGFGKNERK+LFQMIN+LPTIFEVV+GNAKQ 
Sbjct:    85 MQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINELPTIFEVVSGNAKQS 144

Query:    61 KDQSANHNXXXXX-XXXXXRPAESQTK 86
             KD S N+N           R +ES +K
Sbjct:   145 KDLSVNNNNSKSKPSGVKSRQSESLSK 171

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2179709 AL4 "AT5G26210" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 56/88 (63%), Positives = 67/88 (76%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK-Q 59
             M EKDWLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G AK Q
Sbjct:    85 MAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQ 144

Query:    60 PKDQSA-NHNXXXXXXXXXXRPAESQTK 86
              KD+S+ ++N          R +ES+ K
Sbjct:   145 GKDKSSVSNNSSNRSKSSSKRGSESRAK 172

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2149867 AL5 "AT5G20510" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/88 (57%), Positives = 67/88 (76%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQ 59
             MQE++WLSLVAVHSD+WLL+V+FYFG+RFGF + +RK+LF MIN++PT++EVVTGNA KQ
Sbjct:    86 MQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRADRKRLFSMINEVPTVYEVVTGNAEKQ 145

Query:    60 PKDQ--SANHNXXXXXXXXXXRPAESQT 85
              K+   SAN N          R  ES++
Sbjct:   146 TKEMPSSANQNGNRSKSNSKMRGLESKS 173

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

TAIR|locus:2099321 AL3 "AT3G42790" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 49/86 (56%), Positives = 63/86 (73%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK-Q 59
             + EK+WLSLVA+HSD+WLL+V+FYFG+RF F K ERK+LF MIND+PTIFEVVTG AK +
Sbjct:    86 LSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAK 145

Query:    60 PKDQSANHNXXXXXXXXXXRPAESQT 85
              K  +AN N          R +E ++
Sbjct:   146 DKSSAANQNGNKSKSNSKVRTSEGKS 171

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

TAIR|locus:2074663 AL2 "AT3G11200" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 48/87 (55%), Positives = 59/87 (67%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQ KDWLSLVAVHSD WLL+V+FYFGAR    +NERK+LF +INDLPT+F+VVTG  K  
Sbjct:    86 MQRKDWLSLVAVHSDCWLLSVSFYFGARLN--RNERKRLFSLINDLPTLFDVVTGR-KAM 142

Query:    61 KDQSANHNXXXXXXXXXXRPAESQTKA 87
             KD   + +          R  + QTK+
Sbjct:   143 KDNKPSSDSGSKSRNGTKRSIDGQTKS 169

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007067 "mitosis" evidence=RCA

TAIR|locus:2169707 AL1 "AT5G05610" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 49/87 (56%), Positives = 58/87 (66%)

Query:     1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQP 60
             MQ KDWLSLVAVHSD WLL+V+ YFGAR    +NERK+LF +INDLPT+FEVVTG  K  
Sbjct:    84 MQRKDWLSLVAVHSDCWLLSVSSYFGARLN--RNERKRLFSLINDLPTLFEVVTGR-KPI 140

Query:    61 KDQSANHNXXXXXXXXXXRPAESQTKA 87
             KD   + +          R  E QTK+
Sbjct:   141 KDGKPSMDLGSKSRNGVKRSIEGQTKS 167


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.127   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       115   0.00091  102 3  11 22  0.47    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  120 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.12u 0.19s 9.31t   Elapsed:  00:00:00
  Total cpu time:  9.12u 0.19s 9.31t   Elapsed:  00:00:00
  Start:  Sat May 11 04:22:26 2013   End:  Sat May 11 04:22:26 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LA16	ALFL7_ARATH	No assigned EC number	0.8541	0.6737	0.3769	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0039 hypothetical protein (254 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam12165	137	pfam12165, DUF3594, Domain of unknown function (DU	4e-38

>gnl|CDD|221449 pfam12165, DUF3594, Domain of unknown function (DUF3594)

 Score =  125 bits (316), Expect = 4e-38
 Identities = 50/59 (84%), Positives = 56/59 (94%)

Query: 1   MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAKQ 59
           MQEKDWLSLVAVHSDSWLL+VAFYFGARFGF +N+RK+LF MINDLPT+FEVVTG AK+
Sbjct: 76  MQEKDWLSLVAVHSDSWLLSVAFYFGARFGFNRNDRKRLFSMINDLPTVFEVVTGAAKK 134

This presumed domain is functionally uncharacterized.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00628. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF12165	137	DUF3594: Domain of unknown function (DUF3594); Int	100.0
KOG1632	345	consensus Uncharacterized PHD Zn-finger protein [G	99.29

>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=1.3e-38  Score=245.96  Aligned_cols=61  Identities=87%  Similarity=1.388  Sum_probs=58.3

Q ss_pred             CcccchhhhhhhhcchHHHHHHHHhhccccCCccchhHHHHHhhcccceeeeeccCCC-CCC
Q 032409            1 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNAK-QPK   61 (141)
Q Consensus         1 M~rkDWLSLVAVHSDsWLlsVAFyfgAr~GFd~~~RkrLF~mIN~lPTv~Evvtg~~K-q~K   61 (141)
                      |+|+||||||||||||||||||||||||||||+++|+|||+|||+||||||+|+|..| |+|
T Consensus        76 M~r~dWLslVAvHsDsWLlsvAfy~gar~~~~~~~R~rLF~mIN~lpTv~Evv~g~~~~q~k  137 (137)
T PF12165_consen   76 MQRKDWLSLVAVHSDSWLLSVAFYFGARFGFDKNERKRLFSMINDLPTVFEVVTGRAKKQSK  137 (137)
T ss_pred             ccHHHHHHHHHHhccHHHHHHHHHHHHhhccChHHHHHHHHHHhcCchHHHHHhccccccCC
Confidence            8999999999999999999999999999999999999999999999999999999865 654

This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.

>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]

Probab=99.29  E-value=5.8e-13  Score=113.30  Aligned_cols=77  Identities=48%  Similarity=0.584  Sum_probs=66.7

Q ss_pred             CcccchhhhhhhhcchHHHHHHHHhhccc-----cCCccchhHHHHHhhcccceeeeeccCCC---CCCCCCCCCCCCCC
Q 032409            1 MQEKDWLSLVAVHSDSWLLAVAFYFGARF-----GFGKNERKKLFQMINDLPTIFEVVTGNAK---QPKDQSANHNSSKS   72 (141)
Q Consensus         1 M~rkDWLSLVAVHSDsWLlsVAFyfgAr~-----GFd~~~RkrLF~mIN~lPTv~Evvtg~~K---q~Keks~~~n~sKs   72 (141)
                      |+++|||+++++|+|+|+++++||||+++     ++.+.+|+|+|.++|++||++|+++|.++   +.|.++.+++++++
T Consensus       117 ~~~~~~l~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~t~~~~~~~~~~~~~~~k~~~~~~~~~~~  196 (345)
T KOG1632|consen  117 MSESDGLSCVCRQDDSELLSPSFYFGKRGCQFWVKLQKLGRVRLEAEKNDDPTVFEVVSGTATGELPSKDKSSNDRGSKS  196 (345)
T ss_pred             hhhhccceeecccccccccccccccCCccccccccchhhhhhhhhhhhcccchhhhccccccccccccccccccccccee
Confidence            67899999999999999999999999998     89999999999999999999999999765   45555655556666


Q ss_pred             CCCCC
Q 032409           73 KSSGK   77 (141)
Q Consensus        73 ksssK   77 (141)
                      +++.+
T Consensus       197 ~~~~~  201 (345)
T KOG1632|consen  197 KTRKK  201 (345)
T ss_pred             cccCc
Confidence            66555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00