Citrus Sinensis ID: 032425

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MAAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQGQD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHHcccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcEEEEEccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccEcccccccccccccccccccccccccccccHHHHHcccccEEEEcccHHHHccccEEEEEHHHccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHcccc
Coil and Loop (DISEMBL)
maaaafassspvvglgssslsspkrtalgssfvkspvaarnplrvagacggkvtcferDWLRTDLNVIGFGligwlapssipaingksltgLFFESIgtelahfptpppltsqFWSVVVGYMALRvvpvphfwanwiqgqd
Flexible Loop (DISEMBL)
maaaafassspvvglgssslsspkRTALGssfvkspvaarnplrvagacggkVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQGQD
Low Complexity Region (SEG)
MaaaafassspvvglgssslsspKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQGQD
Disordered region (IsUnstruct)
*************************************AARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQ***
Disordered Region (DISOPRED)
*************GL********************************A**GKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQG**
Disordered Region (DISEMBL)
***************************LGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQGQD
Disordered Region (DISPRO)
***************************************RNPLRV*GACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQGQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMALRVVPVPHFWANWIQGQD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
255565725	143	conserved hypothetical protein [Ricinus	0.801	0.790	0.805	4e-44
224104879	149	predicted protein [Populus trichocarpa]	0.801	0.758	0.806	2e-41
18390888	140	photosystem I subunit O [Arabidopsis tha	0.780	0.785	0.734	3e-39
22531014	140	expressed protein [Arabidopsis thaliana]	0.773	0.778	0.732	7e-39
297849148	140	hypothetical protein ARALYDRAFT_470899 [	0.780	0.785	0.716	3e-38
312281545	142	unnamed protein product [Thellungiella h	0.808	0.802	0.717	7e-38
224131784	151	predicted protein [Populus trichocarpa]	0.801	0.748	0.773	4e-37
147858299	144	hypothetical protein VITISV_019056 [Viti	0.773	0.756	0.763	8e-37
225464874	148	PREDICTED: uncharacterized protein LOC10	0.801	0.763	0.737	1e-36
449443468	146	PREDICTED: uncharacterized protein LOC10	0.794	0.767	0.765	2e-36

>gi|255565725|ref|XP_002523852.1| conserved hypothetical protein [Ricinus communis] gi|223536940|gb|EEF38578.1| conserved hypothetical protein [Ricinus communis]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 99/113 (87%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
           AA FA+SS V+GL SSSLSSPK+  LGS FVKSPV ARNPLR  GA GGK  CFER+WLR
Sbjct: 2   AATFATSSTVIGLCSSSLSSPKKICLGSGFVKSPVPARNPLRQTGANGGKFVCFERNWLR 61

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
            DLNVIGFGLIGWLAPS+IPAI+GKSLTGLFFESIG+ELAHFP+PP LTSQFW
Sbjct: 62  KDLNVIGFGLIGWLAPSTIPAIDGKSLTGLFFESIGSELAHFPSPPALTSQFW 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104879|ref|XP_002313603.1| predicted protein [Populus trichocarpa] gi|222850011|gb|EEE87558.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/119 (80%), Positives = 100/119 (84%), Gaps = 6/119 (5%)

Query: 3   AAAFASSSPVVGLGSSSLSS------PKRTALGSSFVKSPVAARNPLRVAGACGGKVTCF 56
           AA FASSS V GLGSSSLSS      PK+  L S FVKSPVAAR+PLR+AG  GGK  CF
Sbjct: 2   AATFASSSAVTGLGSSSLSSPSRASSPKKICLSSGFVKSPVAARSPLRLAGTHGGKFMCF 61

Query: 57  ERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
           ERDWLR DLNVIGFGLIGWLAPSSIPAI GKSL+GLFFESIGTELAHFPTPPPLTSQFW
Sbjct: 62  ERDWLRKDLNVIGFGLIGWLAPSSIPAIGGKSLSGLFFESIGTELAHFPTPPPLTSQFW 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390888|ref|NP_563815.1| photosystem I subunit O [Arabidopsis thaliana] gi|15293053|gb|AAK93637.1| unknown protein [Arabidopsis thaliana] gi|20259137|gb|AAM14284.1| unknown protein [Arabidopsis thaliana] gi|21592969|gb|AAM64918.1| putative 16kDa membrane protein [Arabidopsis thaliana] gi|21702253|emb|CAD37939.1| photosystem I subunit O [Arabidopsis thaliana] gi|332190162|gb|AEE28283.1| photosystem I subunit O [Arabidopsis thaliana]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/113 (73%), Positives = 97/113 (85%), Gaps = 3/113 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
           AA FA+ S V+GLG SS+++       SSF+K  ++A+NPLR+AGA GG+VTCFER+WLR
Sbjct: 2   AATFATPSTVIGLGGSSITTKP---FSSSFLKPTLSAKNPLRLAGASGGRVTCFERNWLR 58

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
            DLNV+GFGLIGWLAPSSIPAINGKSLTGLFF+SIGTELAHFPTPP LTSQFW
Sbjct: 59  RDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22531014|gb|AAM97011.1| expressed protein [Arabidopsis thaliana] gi|23197966|gb|AAN15510.1| expressed protein [Arabidopsis thaliana]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 96/112 (85%), Gaps = 3/112 (2%)

Query: 4   AAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRT 63
           A FA+ S V+GLG SS+++       SSF+K  ++A+NPLR+AGA GG+VTCFER+WLR 
Sbjct: 3   ATFATPSTVIGLGGSSITTKP---FSSSFLKPTLSAKNPLRLAGASGGRVTCFERNWLRR 59

Query: 64  DLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
           DLNV+GFGLIGWLAPSSIPAINGKSLTGLFF+SIGTELAHFPTPP LTSQFW
Sbjct: 60  DLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849148|ref|XP_002892455.1| hypothetical protein ARALYDRAFT_470899 [Arabidopsis lyrata subsp. lyrata] gi|297338297|gb|EFH68714.1| hypothetical protein ARALYDRAFT_470899 [Arabidopsis lyrata subsp. lyrata]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 96/113 (84%), Gaps = 3/113 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
           AA FA+ S V+GLG SS+++       S F+K  ++A+NPLR+AGA GG+VTCFER+WLR
Sbjct: 2   AATFATPSTVIGLGGSSITT---KPFSSPFLKPTLSAKNPLRLAGASGGRVTCFERNWLR 58

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
            DLNV+GFGLIGWLAPSSIPAINGKSLTGLFF+SIGTELAHFPTPP +TSQFW
Sbjct: 59  RDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPAVTSQFW 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281545|dbj|BAJ33638.1| unnamed protein product [Thellungiella halophila]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 97/117 (82%), Gaps = 3/117 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
           AA F + S V+GLG SS+S P+     SSF+K  + A+NPLR+AGA GG+ TCFER+WLR
Sbjct: 2   AATFTTPSTVIGLGGSSVS-PR--PFSSSFLKPTLRAKNPLRLAGASGGRFTCFERNWLR 58

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVV 119
            DLNV+GFGLIGWLAPSSIPAINGKSLTGLFF+SIGTELAHFPTPP LTSQFW  +V
Sbjct: 59  RDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLV 115

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131784|ref|XP_002328107.1| predicted protein [Populus trichocarpa] gi|222837622|gb|EEE75987.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 96/119 (80%), Gaps = 6/119 (5%)

Query: 3   AAAFASSSPVVGLGSSSLSS------PKRTALGSSFVKSPVAARNPLRVAGACGGKVTCF 56
           AA FAS S VVGLGS SLSS      PK+  L S FVKSPV ARNPL +AG  GGK  CF
Sbjct: 2   AATFASPSAVVGLGSGSLSSPSRISSPKKICLSSGFVKSPVTARNPLGLAGTGGGKFMCF 61

Query: 57  ERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
           + DWLR DLNVIGFGLIGWLAPSS+PAI GKSLTGLFFESIGTELAHFPTPPPLTSQFW
Sbjct: 62  QGDWLRKDLNVIGFGLIGWLAPSSVPAIGGKSLTGLFFESIGTELAHFPTPPPLTSQFW 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858299|emb|CAN83522.1| hypothetical protein VITISV_019056 [Vitis vinifera]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 93/114 (81%), Gaps = 5/114 (4%)

Query: 7   ASSSPVVGLGSSSLSSP-----KRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWL 61
           A++S V+GLGSSSLS       KRT L S FVK+PVA RNPLR A ACGGK TCFERDWL
Sbjct: 2   AAASTVIGLGSSSLSPARSSSSKRTHLASGFVKAPVAPRNPLRQAKACGGKFTCFERDWL 61

Query: 62  RTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
           RTDLNVIGFGLI WLAPSSIPAI+G SLTGLFF SIGTEL+HFPT P LTS FW
Sbjct: 62  RTDLNVIGFGLIAWLAPSSIPAIDGNSLTGLFFSSIGTELSHFPTGPALTSPFW 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464874|ref|XP_002273037.1| PREDICTED: uncharacterized protein LOC100244962 isoform 1 [Vitis vinifera] gi|359479489|ref|XP_003632280.1| PREDICTED: uncharacterized protein LOC100244962 isoform 2 [Vitis vinifera] gi|296084873|emb|CBI28282.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/118 (73%), Positives = 93/118 (78%), Gaps = 5/118 (4%)

Query: 3   AAAFASSSPVVGLGSSSLSSP-----KRTALGSSFVKSPVAARNPLRVAGACGGKVTCFE 57
           A   A++S V+GLGSSSLS       KRT L S FVK+PVA RNPL  A ACGGK TCFE
Sbjct: 2   ATTMAAASTVIGLGSSSLSPTRSSSSKRTHLASGFVKAPVAPRNPLMQAKACGGKFTCFE 61

Query: 58  RDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
           RDWLRTDLNVIGFGLI WLAPSSIPAI+G SLTGLFF SIGTEL+HFPT P LTS FW
Sbjct: 62  RDWLRTDLNVIGFGLIAWLAPSSIPAIDGNSLTGLFFSSIGTELSHFPTGPALTSPFW 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443468|ref|XP_004139499.1| PREDICTED: uncharacterized protein LOC101209111 [Cucumis sativus]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 96/115 (83%), Gaps = 3/115 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALG--SSFVKSPVAARNPLRVAGACGGKVTCFERDW 60
           A AFA+SS V GLG++SLSSP   +    S F+K PVAARNPL VAGA GGK TCFERDW
Sbjct: 2   ATAFATSS-VAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60

Query: 61  LRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
           LR DLNVIGFGLIGW+APSSIP I+GKSLTGLFFESIG ELAHFP+PP LTSQFW
Sbjct: 61  LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFW 115

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2201836	140	PSAO "AT1G08380" [Arabidopsis	0.609	0.614	0.837	4.9e-37

TAIR|locus:2201836 PSAO "AT1G08380" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 72/86 (83%), Positives = 81/86 (94%)

Query:    30 SSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSL 89
             SSF+K  ++A+NPLR+AGA GG+VTCFER+WLR DLNV+GFGLIGWLAPSSIPAINGKSL
Sbjct:    26 SSFLKPTLSAKNPLRLAGASGGRVTCFERNWLRRDLNVVGFGLIGWLAPSSIPAINGKSL 85

Query:    90 TGLFFESIGTELAHFPTPPPLTSQFW 115
             TGLFF+SIGTELAHFPTPP LTSQFW
Sbjct:    86 TGLFFDSIGTELAHFPTPPALTSQFW 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.465    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       119   0.00091  102 3  11 22  0.47    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  143 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.98u 0.10s 13.08t   Elapsed:  00:00:01
  Total cpu time:  12.98u 0.10s 13.08t   Elapsed:  00:00:01
  Start:  Sat May 11 05:00:22 2013   End:  Sat May 11 05:00:23 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009522 "photosystem I" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009768 "photosynthesis, light harvesting in photosystem I" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
PLN00046	141	PLN00046, PLN00046, photosystem I reaction center	3e-50
TIGR03059	82	TIGR03059, psaOeuk, photosystem I protein PsaO	3e-18

>gnl|CDD|215040 PLN00046, PLN00046, photosystem I reaction center subunit O; Provisional

 Score =  156 bits (396), Expect = 3e-50
 Identities = 78/114 (68%), Positives = 87/114 (76%), Gaps = 3/114 (2%)

Query: 2   AAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWL 61
            AA  A++S V GLGSSSLS+P+R +  S FVK PV  R    +A A G K T F+RDWL
Sbjct: 1   MAATAATASTVSGLGSSSLSAPRRLS--SGFVKGPVTVRRRAVLARASGSKKT-FDRDWL 57

Query: 62  RTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115
           R DLNVIGFGLIGWLAPSSIPAI G SLTGLFF+SIGTELAHFPT P L S+FW
Sbjct: 58  RKDLNVIGFGLIGWLAPSSIPAIGGNSLTGLFFDSIGTELAHFPTGPALDSKFW 111

Length = 141

>gnl|CDD|132103 TIGR03059, psaOeuk, photosystem I protein PsaO

 Score = 73.3 bits (180), Expect = 3e-18
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 65  LNVIGFGLIGWLAPS--SIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGY 121
             V   G +GW+ P+  ++P   GKSLTGLF  SIG  LAHFP PP L   FW ++  +
Sbjct: 1   APVAAIGFVGWVLPTVLNVPLYGGKSLTGLFASSIGENLAHFPAPPALDDPFWLLLFTW 59

Members of this family are the PsaO protein of photosystem I. This protein is found in chloroplasts but not in Cyanobacteria. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PLN00046	141	photosystem I reaction center subunit O; Provision	100.0
TIGR03059	82	psaOeuk photosystem I protein PsaO. Members of thi	100.0

>PLN00046 photosystem I reaction center subunit O; Provisional

Probab=100.00  E-value=5.3e-61  Score=370.71  Aligned_cols=120  Identities=64%  Similarity=1.007  Sum_probs=115.0

Q ss_pred             ccccccCCcceeccccCCCCCCCccccccCcccCcccccchhhhhccCCCceeeecccccccccceeeeeeeeccccCCC
Q 032425            2 AAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSI   81 (141)
Q Consensus         2 ~aat~a~~stV~Glg~ssls~~~~~~l~s~f~k~~V~aRnpl~~a~a~~gr~t~F~rdWlr~D~~V~~~gliGW~aPSsi   81 (141)
                      |||+|++++||+|||++++++  +.+++|||+|++|.+|||++++.++++++| |||||||+|++||+||||||++||+|
T Consensus         1 maa~~~a~stV~gL~~~sl~~--~~~~ss~f~~~~~~~~~~~~~~~a~~~~~t-F~rDWLr~d~~V~~~gl~GW~~PS~i   77 (141)
T PLN00046          1 MAATAATASTVSGLGSSSLSA--PRRLSSGFVKGPVTVRRRAVLARASGSKKT-FDRDWLRKDLNVIGFGLIGWLAPSSI   77 (141)
T ss_pred             ChHHHHhHHHhhhccccCccc--ccccccccccCcccccchhhhhhhcccccc-cchhhhhcccceeeeeeeeeeccccc
Confidence            567788888999999999987  678999999999999999999999999998 99999999999999999999999999


Q ss_pred             cccCCCchhhhhHhhhhhhhcCCCCCCCCCchhHHHHHhhhhe
Q 032425           82 PAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMAL  124 (141)
Q Consensus        82 pa~~g~SL~glF~~SIG~eLAhFPtgPal~d~FWL~lvtWH~~  124 (141)
                      |+||||||+|+|+||||+|||||||||+|||||||||||||+-
T Consensus        78 pa~~g~sL~glF~~sIg~~LahfPt~Pal~~~fWL~litWHlG  120 (141)
T PLN00046         78 PAIGGNSLTGLFFDSIGTELAHFPTGPALDSKFWLWLITWHLG  120 (141)
T ss_pred             cccCCchhHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999973

>TIGR03059 psaOeuk photosystem I protein PsaO

Probab=100.00  E-value=3.9e-38  Score=226.56  Aligned_cols=60  Identities=45%  Similarity=0.946  Sum_probs=58.2

Q ss_pred             cceeeeeeeeccccC--CCcccCCCchhhhhHhhhhhhhcCCCCCCCCCchhHHHHHhhhhe
Q 032425           65 LNVIGFGLIGWLAPS--SIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWSVVVGYMAL  124 (141)
Q Consensus        65 ~~V~~~gliGW~aPS--sipa~~g~SL~glF~~SIG~eLAhFPtgPal~d~FWL~lvtWH~~  124 (141)
                      ++||++|||||++||  +||+|||+||||+|+||||||||||||||||||||||||||||+-
T Consensus         1 ~~V~~~gliGW~~Ps~~~ip~~~g~SLtglF~~sIg~~LAhFPt~Pal~~~fWL~litWH~G   62 (82)
T TIGR03059         1 APVAAIGFVGWVLPTVLNVPLYGGKSLTGLFASSIGENLAHFPAPPALDDPFWLLLFTWHSG   62 (82)
T ss_pred             CCceeEeeEEeeccccccccccCCchHHHHHHHHHHHHHhcCCCCCccCCchHHHHHHHHHH
Confidence            489999999999999  999999999999999999999999999999999999999999973

Members of this family are the PsaO protein of photosystem I. This protein is found in chloroplasts but not in Cyanobacteria.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00