Citrus Sinensis ID: 032431

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Secondary Structure (PSIPRED)
cHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEEEEccccEEEEcc
Coil and Loop (DISEMBL)
MKQVIDRhnlhsqnlhkfdqpslqlqleSSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYkathltpssaVHLEIILKtgrvltlr
Flexible Loop (DISEMBL)
mkqvidrhnlhsqnlhkfdqpslqlqLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSlegglsrvvqtkgerLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKAthltpssavhleiilktgrvltlr
Low Complexity Region (SEG)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGeelqelnmeelmrleKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Disordered region (IsUnstruct)
********************************************************************************************************LKQRQGLIQMYKATHLTPSSAVHLEIILKTGRVL***
Disordered Region (DISOPRED)
MKQVIDRHN*********************TYAILSKEMAD*TRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR********************************VL*L*
Disordered Region (DISEMBL)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Disordered Region (DISPRO)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxQGLIQMYKATHLTPSSAVHLEIILKTGRVLTLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q9FVC1	240	MADS-box protein SVP OS=A	yes	no	0.765	0.45	0.568	2e-27
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.758	0.403	0.564	2e-26
Q5K4R0	246	MADS-box transcription fa	yes	no	0.943	0.540	0.470	2e-23
Q9XJ66	228	MADS-box transcription fa	no	no	0.751	0.464	0.5	1e-22
O82794	220	MADS-box protein AGL24 OS	no	no	0.851	0.545	0.429	8e-21
Q69TG5	245	MADS-box transcription fa	no	no	0.751	0.432	0.410	8e-18
Q6EP49	240	MADS-box transcription fa	no	no	0.872	0.512	0.323	3e-06
Q7XUN2	249	MADS-box transcription fa	no	no	0.673	0.381	0.381	1e-05
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.794	0.466	0.330	1e-05
P29385	246	Agamous-like MADS-box pro	no	no	0.581	0.333	0.354	4e-05

>sp|Q9FVC1|SVP_ARATH MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/109 (56%), Positives = 91/109 (83%), Gaps = 1/109 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK+V++RHNL S+NL K DQPSL+LQL E+S +A +SKE+AD++  LRQM+GEELQ L++
Sbjct: 62  MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108
           EEL +LEK+LE GL+RV++TK +++++EI  L++K  QL +EN RL+Q+
Sbjct: 122 EELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQ 170

Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 89/108 (82%), Gaps = 1/108 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MKQ+++R +LHS+NL K DQPSL+LQL E+S Y+ LSKE+++++  LRQM+GEELQ LN+
Sbjct: 62  MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQ 107
           EEL +LE+SLE GLSRV++ KG++++ EI+ L++K   L EEN +L+Q
Sbjct: 122 EELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQ 169

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/136 (47%), Positives = 91/136 (66%), Gaps = 3/136 (2%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLE-SSTYAILSKEMADRTRELRQMKGEELQELNM 59
           M+Q+IDR+N HS+ L + +   L LQ E SST A L +E+A+ +  LRQM+GEEL  LN+
Sbjct: 81  MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNV 140

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATH 119
           E+L  LEKSLE GL  V++TK +++L+EID L RK  QL EENLRLK++  + +M +   
Sbjct: 141 EQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEE 200

Query: 120 LTPSSAVHLEIILKTG 135
           + P      EI+ + G
Sbjct: 201 MQP--GPDSEIVYEEG 214

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XJ66|MAD22_ORYSJ MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 81/106 (76%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           M ++ID++N HS NL K +QPSL L LE S YA L++++A+ +  LRQM+GEEL+ L+++
Sbjct: 62  MNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSID 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106
           EL +LEK+LE GL RV+ TK ++ + +I  L+RK +QL EEN++L+
Sbjct: 122 ELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLR 167

Probable transcription factor. May be required for spikelet (rice flower) development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 87/121 (71%), Gaps = 1/121 (0%)

Query: 1   MKQVIDRHNLHSQNLHKF-DQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           M+ ++ R++LH+ N++K  D PS  L+LE+   + LSKE+ D+T++LR+++GE+L  LN+
Sbjct: 62  MRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATH 119
           EEL RLEK LE GLSRV + KGE ++++I +L ++ ++L +EN RL+ +   ++  K T 
Sbjct: 122 EELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDKLETLERAKLTT 181

Query: 120 L 120
           L
Sbjct: 182 L 182

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69TG5|MAD55_ORYSJ MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 23/129 (17%)

Query: 1   MKQVIDRHNLHSQNLHKFD-QPSLQL----------------------QLESSTYAILSK 37
           M ++ID++  HS+NL K D QPS+ L                      QLE S  + L++
Sbjct: 62  MNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNE 121

Query: 38  EMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQ 97
           ++A+ + +LRQM+GEEL+ L++EEL ++EK+LE GL RV+ TK ++ + EI  L+RK  Q
Sbjct: 122 QLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQ 181

Query: 98  LTEENLRLK 106
           L EEN+RL+
Sbjct: 182 LAEENMRLR 190

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 7/130 (5%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK VIDR+            P+ +L+      A L +++ +     RQ+ GE+L  LN++
Sbjct: 62  MKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVK 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI-----QMY 115
           EL  LE  LE  L  V   K   L++EI  L RK + + +EN+ L ++  LI     ++Y
Sbjct: 122 ELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAELY 181

Query: 116 KATHLT--PS 123
           K  + T  PS
Sbjct: 182 KKIYETEGPS 191

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 44  RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103
           R  R M GE+L  L+++EL +LEK LE  LS+  Q K + ++ ++D LRRKE QL E N 
Sbjct: 107 RSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNK 166

Query: 104 RLKQR-QGLIQMYKATHLTPSSAVHLEIILKTGRVLT 139
           +LK + +              S VH  ++   GRVL 
Sbjct: 167 QLKNKLEAEADSSNCRSAIQDSWVHGTVV-SGGRVLN 202

Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 58/112 (51%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK VI+R++         + P+ ++Q      AIL +++ +     RQM GEEL  L++E
Sbjct: 62  MKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSVE 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI 112
            L  LE  LE  L  V   K + L+ EI  L R+   + +ENL L ++  L+
Sbjct: 122 ALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKVNLM 173

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 47  RQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLK 106
           R + GE L  LN +EL  LE  LE G+SRV   K E L+ EI+ ++++E +L  +N+ L+
Sbjct: 124 RHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLR 183

Query: 107 ----QRQGLIQMYKATHLTPSSAVHLEIILKTG 135
               +R GL Q         SS +H   + ++G
Sbjct: 184 SKITERTGLQQQ-------ESSVIHQGTVYESG 209

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
326415786	193	AGAMOUS-like E 24-like protein 1 [Aquile	0.765	0.559	0.648	1e-31
224141161	215	predicted protein [Populus trichocarpa]	0.751	0.493	0.622	9e-30
255545954	161	mads box protein, putative [Ricinus comm	0.815	0.714	0.606	2e-29
449451385	228	PREDICTED: MADS-box protein SVP-like [Cu	0.765	0.473	0.633	5e-29
224141159	169	predicted protein [Populus trichocarpa]	0.751	0.627	0.613	5e-29
375155240	215	SVP4 [Actinidia chinensis]	0.921	0.604	0.555	5e-29
118482054	215	unknown [Populus trichocarpa]	0.751	0.493	0.613	8e-29
316890774	227	MADS-box protein STMADS11 subfamily [Cof	0.794	0.493	0.589	8e-29
83999600	229	incomposita protein [Antirrhinum majus]	0.893	0.550	0.559	2e-28
255563302	184	MADS-box transcription factor, putative	0.751	0.576	0.638	2e-28

>gi|326415786|gb|ADZ72840.1| AGAMOUS-like E 24-like protein 1 [Aquilegia formosa]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 92/108 (85%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK++++RHNLHS+NLHK DQPSL+LQLE+  YA LSKE+A+R+R+LR M+GEELQ LN+E
Sbjct: 31  MKEILERHNLHSKNLHKLDQPSLELQLENGNYARLSKEVAERSRQLRNMRGEELQGLNIE 90

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108
           EL +LEKSLE GLSRV++TK + ++NEI  L+ K A+L EEN RLKQ+
Sbjct: 91  ELQQLEKSLETGLSRVLETKSDWIMNEISTLQAKGAKLMEENERLKQK 138

Source: Aquilegia formosa

Species: Aquilegia formosa

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141161|ref|XP_002323943.1| predicted protein [Populus trichocarpa] gi|222866945|gb|EEF04076.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 89/106 (83%)

Query: 3   QVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEEL 62
           QVI+R NLH +NL KF QPS++LQL+S+ +A+L+KE+A++TRELR+ +GE+LQ LNMEEL
Sbjct: 64  QVIERRNLHPKNLDKFSQPSVELQLDSAVHAMLNKEIAEKTRELRRTRGEDLQGLNMEEL 123

Query: 63  MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108
            +LEK +EG L RV++TKGE++L E+DAL+ KE QL EEN RL QR
Sbjct: 124 EKLEKLIEGSLCRVMETKGEKILKEVDALKSKEQQLIEENQRLTQR 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545954|ref|XP_002514037.1| mads box protein, putative [Ricinus communis] gi|223547123|gb|EEF48620.1| mads box protein, putative [Ricinus communis]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 92/117 (78%), Gaps = 2/117 (1%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           MK+ I R+NLHS NL K DQPSL+LQLE+S    LSKE+AD+T +LRQM+GE+LQ L++E
Sbjct: 1   MKETITRYNLHSNNLDKLDQPSLELQLENSNNIRLSKEVADKTHQLRQMRGEDLQGLSIE 60

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKA 117
           EL +LEK LE GL+RV+QTKGER++NEI  L +K AQL EEN +LKQ+  +I + K 
Sbjct: 61  ELQQLEKMLESGLTRVLQTKGERIMNEISTLEKKGAQLLEENKQLKQK--MIALCKG 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451385|ref|XP_004143442.1| PREDICTED: MADS-box protein SVP-like [Cucumis sativus]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 91/109 (83%), Gaps = 1/109 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK +I+RHNLHS+NL K +QPSL+LQL E+S Y  L+KE+A++T +LRQM+GEELQ LN+
Sbjct: 62  MKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNI 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108
           EEL +LEKSLE GLSRV++ KGER++ EI  L+RK A+L +EN RLKQ+
Sbjct: 122 EELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141159|ref|XP_002323942.1| predicted protein [Populus trichocarpa] gi|222866944|gb|EEF04075.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 88/106 (83%)

Query: 3   QVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEEL 62
           QVI+R NLH +NL  F QPS++LQL+S+ +A+L+KE+A++TRELR+ +GE+LQ LNMEEL
Sbjct: 64  QVIERRNLHPKNLDTFSQPSVELQLDSAVHAMLNKEIAEKTRELRRTRGEDLQGLNMEEL 123

Query: 63  MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108
            +LEK +E  L RV++TKGE++L E+DAL+ KE QL EEN RLKQR
Sbjct: 124 EKLEKLIEKSLCRVIETKGEKILKEVDALKSKEHQLIEENQRLKQR 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|375155240|gb|AFA37970.1| SVP4 [Actinidia chinensis]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/135 (55%), Positives = 95/135 (70%), Gaps = 5/135 (3%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           M QVI+RHNL   NL + +QPSL+LQLE+STYA+L  E+ +RTRELRQ++GEEL  L +E
Sbjct: 62  MNQVIERHNLQGDNLVQQNQPSLELQLENSTYAMLCNEVEERTRELRQLRGEELHGLGVE 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATHL 120
           EL  LEKSLEGGL R+++TK ER   EI AL+RKE +L EENL L+QR   +Q+  A+  
Sbjct: 122 ELKNLEKSLEGGLGRILKTKDERFEKEITALKRKETRLREENLWLQQR---LQIVNAS-- 176

Query: 121 TPSSAVHLEIILKTG 135
           TP      E I   G
Sbjct: 177 TPEQGQSSESITNNG 191

Source: Actinidia chinensis

Species: Actinidia chinensis

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482054|gb|ABK92958.1| unknown [Populus trichocarpa]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 88/106 (83%)

Query: 3   QVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEEL 62
           QVI+R NLH +NL  F QPS++LQL+S+ +A+L+KE+A++TRELR+ +GE+LQ LNMEEL
Sbjct: 64  QVIERRNLHPKNLDTFSQPSVELQLDSAVHAMLNKEIAEKTRELRRTRGEDLQGLNMEEL 123

Query: 63  MRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108
            +LEK +E  L RV++TKGE++L E+DAL+ KE QL EEN RLKQR
Sbjct: 124 EKLEKLIEKSLCRVIETKGEKILKEVDALKSKEHQLIEENQRLKQR 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316890774|gb|ADU56833.1| MADS-box protein STMADS11 subfamily [Coffea arabica]

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 91/112 (81%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           M  ++ ++ LHS NL K +QPSL+LQLE+S +  LSKE+ADRT +LRQMKGE+LQ L +E
Sbjct: 62  MSDILGKYKLHSSNLEKTEQPSLELQLENSCHVRLSKEVADRTHQLRQMKGEDLQGLKIE 121

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI 112
           EL +LEK LE GL+RV+QTKGER++NEI+AL++K A+L EEN +LKQ+  ++
Sbjct: 122 ELQQLEKVLEAGLTRVLQTKGERIMNEINALQKKGAELFEENKQLKQKMAML 173

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83999600|emb|CAG27846.1| incomposita protein [Antirrhinum majus]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 96/127 (75%), Gaps = 1/127 (0%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGEELQELNM 59
           MK++++RHNLHS+NL K +QPSL+LQL E S    LS E+A+R+++LR+M+GEELQ LNM
Sbjct: 62  MKEILERHNLHSKNLGKMEQPSLELQLVEDSNCTRLSNEVAERSQQLRRMRGEELQGLNM 121

Query: 60  EELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATH 119
           EEL RLE+SLE GLSRV+  KGE+++NEI+ L+ K  QL +EN RLKQ+   I  Y+   
Sbjct: 122 EELQRLERSLEVGLSRVLDKKGEKIMNEINQLQEKGMQLMQENQRLKQQVVDISNYQQIT 181

Query: 120 LTPSSAV 126
            TP S +
Sbjct: 182 ATPDSEI 188

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563302|ref|XP_002522654.1| MADS-box transcription factor, putative [Ricinus communis] gi|223538130|gb|EEF39741.1| MADS-box transcription factor, putative [Ricinus communis]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 90/108 (83%), Gaps = 2/108 (1%)

Query: 1   MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNME 60
           + QVI+RHNLH +NL + DQPSL+LQLE+ T   LSKE+A++T+ELRQM+GEELQ L+ME
Sbjct: 22  LNQVIERHNLHPRNLGRLDQPSLELQLENCT--ALSKEVAEKTQELRQMRGEELQGLSME 79

Query: 61  ELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108
           EL +LEKSLEGGL RV++TK + + NEI+ L+RK A+L EEN RLKQ+
Sbjct: 80  ELQQLEKSLEGGLKRVMETKDDAITNEINDLKRKGAELMEENERLKQQ 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2041233	240	SVP "AT2G22540" [Arabidopsis t	0.773	0.454	0.486	2.1e-22
UNIPROTKB|Q5K4R0	246	MADS47 "MADS-box transcription	0.950	0.544	0.401	1.5e-19
UNIPROTKB|Q9XJ66	228	MADS22 "MADS-box transcription	0.765	0.473	0.416	8.3e-19
TAIR|locus:2121924	220	AGL24 "AT4G24540" [Arabidopsis	0.851	0.545	0.347	2.9e-16
TAIR|locus:2121070	228	AGL21 "AT4G37940" [Arabidopsis	0.921	0.570	0.235	8.7e-05
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.978	0.575	0.257	9.8e-05

TAIR|locus:2041233 SVP "AT2G22540" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/111 (48%), Positives = 79/111 (71%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQL-ESSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             MK+V++RHNL S+NL K DQPSL+LQL E+S +A +SKE+AD++  LRQM+G        
Sbjct:    62 MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDI 121

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQG 110
                    K+LE GL+RV++TK +++++EI  L++K  QL +EN RL+Q QG
Sbjct:   122 EELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQ-QG 171

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB|Q5K4R0 MADS47 "MADS-box transcription factor 47" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 55/137 (40%), Positives = 81/137 (59%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLE-SSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             M+Q+IDR+N HS+ L + +   L LQ E SST A L +E+A+ +  LRQM+G        
Sbjct:    81 MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNV 140

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATH 119
                    KSLE GL  V++TK +++L+EID L RK  QL EENLRLK++  + +M +   
Sbjct:   141 EQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEE 200

Query:   120 LTPSSAVHLEIILKTGR 136
             + P      EI+ + G+
Sbjct:   201 MQPGP--DSEIVYEEGQ 215

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

UNIPROTKB|Q9XJ66 MADS22 "MADS-box transcription factor 22" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 45/108 (41%), Positives = 69/108 (63%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXXX 60
             M ++ID++N HS NL K +QPSL L LE S YA L++++A+ +  LRQM+G         
Sbjct:    62 MNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSID 121

Query:    61 XXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR 108
                   K+LE GL RV+ TK ++ + +I  L+RK +QL EEN++L+ +
Sbjct:   122 ELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQ 169

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

TAIR|locus:2121924 AGL24 "AT4G24540" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 42/121 (34%), Positives = 75/121 (61%)

Query:     1 MKQVIDRHNLHSQNLHKF-DQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXX 59
             M+ ++ R++LH+ N++K  D PS  L+LE+   + LSKE+ D+T++LR+++G        
Sbjct:    62 MRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLNL 121

Query:    60 XXXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYKATH 119
                    K LE GLSRV + KGE ++++I +L ++ ++L +EN RL+ +   ++  K T 
Sbjct:   122 EELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDKLETLERAKLTT 181

Query:   120 L 120
             L
Sbjct:   182 L 182

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010220 "positive regulation of vernalization response" evidence=IEP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048438 "floral whorl development" evidence=IGI

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2121070 AGL21 "AT4G37940" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 32/136 (23%), Positives = 57/136 (41%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXXX 60
             MK VIDR+N       +   P+ +++      A+L +E+       RQM G         
Sbjct:    62 MKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVN 121

Query:    61 XXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQR-----QGLIQMY 115
                     +E  L  +   K + L  EI  L +K   + +ENL L ++     Q  +++Y
Sbjct:   122 ELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQENVELY 181

Query:   116 KATHLTPSSA-VHLEI 130
             K  ++  ++   H E+
Sbjct:   182 KKAYMANTNGFTHREV 197

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 36/140 (25%), Positives = 58/140 (41%)

Query:     1 MKQVIDRHNLHSQNLHKFDQPSLQLQLESSTYAILSKEMADRTRELRQMKGXXXXXXXXX 60
             MK VI+R++         + P+ ++Q      AIL +++ +     RQM G         
Sbjct:    62 MKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSVE 121

Query:    61 XXXXXXKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI-QMYKATH 119
                     LE  L  V   K + L+ EI  L R+   + +ENL L ++  L+ Q     H
Sbjct:   122 ALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKVNLMHQQNMELH 181

Query:   120 LTPSSAVHLEIILKTGRVLT 139
                S    ++I  K   +LT
Sbjct:   182 EKVSEVEGVKIANKNS-LLT 200


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.343    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       126   0.00091  102 3  10 22  0.38    31
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  534 (57 KB)
  Total size of DFA:  134 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.61u 0.10s 17.71t   Elapsed:  00:00:01
  Total cpu time:  17.61u 0.10s 17.71t   Elapsed:  00:00:01
  Start:  Sat May 11 05:03:44 2013   End:  Sat May 11 05:03:45 2013

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam01486	100	pfam01486, K-box, K-box region	2e-11

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 56.4 bits (137), Expect = 2e-11
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 44  RELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENL 103
           RE R + GE+L  L+++EL +LE+ LE GL  +   K E LLN+I+ L++KE +L EEN 
Sbjct: 33  REQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQIEELQKKERELQEENR 92

Query: 104 RLKQR 108
            L+Q+
Sbjct: 93  NLRQK 97

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.92
KOG0014	195	consensus MADS box transcription factor [Transcrip	97.24
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.32
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	91.81
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.17
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	89.1
COG2433	652	Uncharacterized conserved protein [Function unknow	88.86
PRK13169	110	DNA replication intiation control protein YabA; Re	86.66
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	85.15
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	83.05

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.92  E-value=9.3e-25  Score=151.96  Aligned_cols=90  Identities=37%  Similarity=0.517  Sum_probs=86.3

Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431           22 SLQLQLESSTYAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEE  101 (141)
Q Consensus        22 ~~~~~~~~~e~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~ee  101 (141)
                      ....+.|..++++|+.+++.|+..+|||+|+||++||++||++||++|+.||.+||+||+++|+++|+.|++|++.+.++
T Consensus        11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e   90 (100)
T PF01486_consen   11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 032431          102 NLRLKQRQGL  111 (141)
Q Consensus       102 N~~L~~~~~~  111 (141)
                      |..|+.++.+
T Consensus        91 n~~L~~~~~e  100 (100)
T PF01486_consen   91 NNQLRQKIEE  100 (100)
T ss_pred             HHHHHHHhcC
Confidence            9999999864

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=97.24  E-value=0.0001  Score=55.91  Aligned_cols=73  Identities=30%  Similarity=0.332  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHH---hhcccccCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 032431           28 ESSTYAILSKEMADRTRE---LRQMKGEELQELNM-EELMRLEKSLEGGLSRVVQTKGERLLNEID-ALRRKEAQLTE  100 (141)
Q Consensus        28 ~~~e~~~Lk~e~e~L~~~---~R~l~GedL~~Lsl-~EL~~LE~qLe~al~~IR~rK~qll~~~i~-~Lk~Ke~~L~e  100 (141)
                      +......++...+.+...   +++++|+++.++++ .+|..+|.+++.++..+|..+...+..++. .++.++..+..
T Consensus       112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (195)
T KOG0014|consen  112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEA  189 (195)
T ss_pred             hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhccc
Confidence            445556677777777644   99999999999999 999999999999999999999999888776 55555444443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.32  E-value=0.3  Score=32.02  Aligned_cols=49  Identities=29%  Similarity=0.445  Sum_probs=34.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQG  110 (141)
Q Consensus        57 Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~  110 (141)
                      +|++-|.+||..+..|+..|..     +..+++.|+.+...|.++|..|.....
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~   49 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENE   49 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5789999999999999999875     445567777775555555555555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.81  E-value=2.5  Score=27.74  Aligned_cols=50  Identities=20%  Similarity=0.378  Sum_probs=37.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGL  111 (141)
Q Consensus        57 Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~  111 (141)
                      +|++=|.+||..+..|+.-|     .++.-+|+.|+.|...|..+-..+.....+
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~rea   50 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREA   50 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence            57888999999999999886     466678888888877666665555554443

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.17  E-value=4  Score=27.23  Aligned_cols=43  Identities=23%  Similarity=0.421  Sum_probs=33.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR  104 (141)
Q Consensus        57 Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~  104 (141)
                      +|++=|.+||..+..|+.-|-     ++.-+|+.|+.|-..|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            578889999999999999874     5666778888876666665444

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=89.10  E-value=5.1  Score=28.14  Aligned_cols=51  Identities=25%  Similarity=0.345  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431           59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM  114 (141)
Q Consensus        59 l~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~  114 (141)
                      ++.|.+||++|..-+..|..-|.+     +..+-..-..|.-||..|+..+.+...
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467888999998888887765544     345556666677788888888877654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=88.86  E-value=8.8  Score=34.76  Aligned_cols=100  Identities=19%  Similarity=0.219  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431           32 YAILSKEMADRTRELRQMKGEELQELNMEELMRLEKSLEGGLSRVV-----QTKGERLLNEIDALRRKEAQLTEENLRLK  106 (141)
Q Consensus        32 ~~~Lk~e~e~L~~~~R~l~GedL~~Lsl~EL~~LE~qLe~al~~IR-----~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~  106 (141)
                      +++|..+|..|+..+-.+-         +++..||.+|+..-.+++     .|+.+.+...|..|+++...-...-..|.
T Consensus       431 ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~  501 (652)
T COG2433         431 VERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE  501 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555544443         788999999998888877     34555666788888877666666666677


Q ss_pred             HHHHhHHhhhhc-------CC--------CCCCcchhhheecccceecc
Q 032431          107 QRQGLIQMYKAT-------HL--------TPSSAVHLEIILKTGRVLTL  140 (141)
Q Consensus       107 ~~~~~~~~~~~~-------~~--------~~~s~~~~~~~~~~~~~~~~  140 (141)
                      .++.........       ..        ......+...+++.|+|+-+
T Consensus       502 ~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~gik~GDvi~v  550 (652)
T COG2433         502 RKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILV  550 (652)
T ss_pred             HHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhccccCcEEEE
Confidence            776665433321       11        11112244678889988754

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=86.66  E-value=8.3  Score=27.28  Aligned_cols=49  Identities=24%  Similarity=0.279  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032431           59 MEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLI  112 (141)
Q Consensus        59 l~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~  112 (141)
                      ++-+.+||+|+..-+..+..-|.+     +..+-.....|.-||..|+..+.+.
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999999988887776544     3556666677888888888888875

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=85.15  E-value=1.7  Score=27.51  Aligned_cols=30  Identities=33%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHHHHH
Q 032431           48 QMKGEELQELNMEELMRLEKSLEGGLSRVV   77 (141)
Q Consensus        48 ~l~GedL~~Lsl~EL~~LE~qLe~al~~IR   77 (141)
                      +..|+||+.||++||..==..|+.=+.+++
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~   41 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLE   41 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999764344443333333

The function of this family is unknown.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=83.05  E-value=2.4  Score=29.96  Aligned_cols=25  Identities=40%  Similarity=0.470  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032431           87 EIDALRRKEAQLTEENLRLKQRQGL  111 (141)
Q Consensus        87 ~i~~Lk~Ke~~L~eeN~~L~~~~~~  111 (141)
                      ++..+++|...|+|||+.|+-++.-
T Consensus        73 e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          73 EVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888889999999999988753

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.49
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	86.64
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	85.75
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	85.25
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	84.05
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	80.74

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.49  E-value=1.4  Score=28.62  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=33.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032431           57 LNMEELMRLEKSLEGGLSRVVQTKGERLLNEIDALRRKEAQLTEENLR  104 (141)
Q Consensus        57 Lsl~EL~~LE~qLe~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~  104 (141)
                      +|++=|.+||..++.|+..|     .++..+|+.|+.|-..|.++|..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999986     45566777787777665555555

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=86.64  E-value=3.2  Score=25.40  Aligned_cols=39  Identities=21%  Similarity=0.263  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431           71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ  113 (141)
Q Consensus        71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~  113 (141)
                      .|..+.|.||.+.    +..|..++..|..+|..|..++....
T Consensus        19 eAArrsR~RK~~~----~~~Le~~v~~L~~eN~~L~~ev~~Lr   57 (63)
T 2dgc_A           19 EAARRSRARKLQR----MKQLEDKVEELLSKNYHLENEVARLK   57 (63)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566778888554    57888888889999999988877653

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=85.75  E-value=4.1  Score=24.73  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431           72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM  114 (141)
Q Consensus        72 al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~  114 (141)
                      |..+-|.||.+.    +..|..++..|..+|..|...+.....
T Consensus        13 AA~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~L~~   51 (63)
T 2wt7_A           13 AAAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIANLLK   51 (63)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455558888665    578888888999999999888876544

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=85.25  E-value=4.2  Score=24.18  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032431           72 GLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQ  113 (141)
Q Consensus        72 al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~  113 (141)
                      |..+-|.||..    .++.|..++..|..+|..|..++....
T Consensus        12 sA~rSR~RKk~----~~~~LE~~v~~L~~eN~~L~~~~~~L~   49 (55)
T 1dh3_A           12 AARESRRKKKE----YVKSLENRVAVLENQNKTLIEELKALK   49 (55)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455777754    467888999999999999999987654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=84.05  E-value=5  Score=24.06  Aligned_cols=40  Identities=23%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032431           71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQM  114 (141)
Q Consensus        71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~  114 (141)
                      .|..+-|.||.+.    +..|..++..|..+|..|..++.....
T Consensus        11 ~AA~k~R~rKk~~----~~~Le~~~~~L~~~n~~L~~~i~~L~~   50 (61)
T 1t2k_D           11 AAASRSRQKRKVW----VQSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555668888665    578888888888888888888776544

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=80.74  E-value=7.1  Score=23.48  Aligned_cols=42  Identities=24%  Similarity=0.218  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 032431           71 GGLSRVVQTKGERLLNEIDALRRKEAQLTEENLRLKQRQGLIQMYK  116 (141)
Q Consensus        71 ~al~~IR~rK~qll~~~i~~Lk~Ke~~L~eeN~~L~~~~~~~~~~~  116 (141)
                      .|..+-|.||.+.    +..|..++..|..+|..|..++.......
T Consensus        11 ~AA~k~R~rKk~~----~~~Le~~v~~L~~~n~~L~~~v~~L~~e~   52 (62)
T 1jnm_A           11 IAASKSRKRKLER----IARLEEKVKTLKAQNSELASTANMLREQV   52 (62)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566678888655    57888999999999999998887765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00