Citrus Sinensis ID: 032454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI
Secondary Structure (PSIPRED)
cHHHHHHcccEEEHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcEEEEEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHcHHHHccccccccEEEEEccccccccccEEEEEEEcccHHHccccccccccHccccccHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSrirvgdaapmaYIEFVDRenelrqskpavpqpppraaldpwtrsrltknfappkqekssdaei
Flexible Loop (DISEMBL)
mvsqlvkheriettvakakevRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAyrykdraggytrllrsrirvgdaaPMAYIEFVDRENElrqskpavpqpppraaldpwtrsrltknfappkqekssdaei
Low Complexity Region (SEG)
MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI
Disordered region (IsUnstruct)
********************VRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD**********************************************
Disordered Region (DISOPRED)
MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR*********************************************
Disordered Region (DISEMBL)
MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDREN***************AALDPWTRSRLTKNF*************
Disordered Region (DISPRO)
**SQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDREN*******************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDAEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
A0L5Z9	126	50S ribosomal protein L17	yes	no	0.685	0.761	0.567	2e-25
Q749B4	175	50S ribosomal protein L17	yes	no	0.764	0.611	0.504	5e-25
A1ALW8	127	50S ribosomal protein L17	yes	no	0.685	0.755	0.552	8e-24
B3E858	124	50S ribosomal protein L17	yes	no	0.671	0.758	0.553	2e-23
A5GAU7	184	50S ribosomal protein L17	yes	no	0.685	0.521	0.520	6e-23
Q2RQY5	140	50S ribosomal protein L17	yes	no	0.685	0.685	0.531	8e-23
B9M6F1	181	50S ribosomal protein L17	yes	no	0.671	0.519	0.531	1e-22
B6JEX2	139	50S ribosomal protein L17	yes	no	0.685	0.690	0.531	1e-22
B6IRT1	139	50S ribosomal protein L17	yes	no	0.7	0.705	0.520	2e-22
Q39XX8	178	50S ribosomal protein L17	yes	no	0.685	0.539	0.510	2e-22

>sp|A0L5Z9|RL17_MAGSM 50S ribosomal protein L17 OS=Magnetococcus sp. (strain MC-1) GN=rplQ PE=3 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 75/97 (77%), Gaps = 1/97 (1%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD-DVIHKLFTE 59
           M+  L KHERIETTV +AKE+R +A+ ++ LGK G L A R+A + + GD +V+HKLFT+
Sbjct: 24  MLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQALSILNGDKEVVHKLFTD 83

Query: 60  LAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
           LA R KDR GGYTR+L++R R GD APM++IE V+R+
Sbjct: 84  LAERNKDRQGGYTRILKTRFRYGDCAPMSFIELVERD 120

Magnetococcus sp. (strain MC-1) (taxid: 156889)

>sp|Q749B4|RL17_GEOSL 50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rplQ PE=3 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 78/109 (71%), Gaps = 2/109 (1%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA+++R   V+ KLF+ +
Sbjct: 24  MVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAASYIRDKKVVTKLFSTI 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR--ENELRQSKPAVP 107
           A RYK+R GGYTR+++  IR GD AP++ IE V+   E ++++SKP  P
Sbjct: 84  APRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKSKPTAP 132

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

>sp|A1ALW8|RL17_PELPD 50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379) GN=rplQ PE=3 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 70/96 (72%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MV+ L  HE+I TT AKAKE+R +A+ M+ LGK G L + R AAAF+R   V+ KLF+ +
Sbjct: 24  MVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAAAFIREKSVVTKLFSTI 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
           A RYK+RAGGYTR+++   R GDAAPM+ IE V+ E
Sbjct: 84  APRYKERAGGYTRIIKVGSRNGDAAPMSIIELVEEE 119

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

>sp|B3E858|RL17_GEOLS 50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplQ PE=3 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 71/94 (75%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MV+ L+ HERI TT AKAKE+R +A+ M+ LGK G L A R+AAA++R   V+ KLF+ +
Sbjct: 24  MVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAAAYIREKSVVTKLFSTI 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 94
           A RYKDRAGGYTR+++   R+GDAA ++ IE V+
Sbjct: 84  APRYKDRAGGYTRIIKLGQRLGDAASLSVIELVE 117

Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) (taxid: 398767)

>sp|A5GAU7|RL17_GEOUR 50S ribosomal protein L17 OS=Geobacter uraniireducens (strain Rf4) GN=rplQ PE=3 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 70/96 (72%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MV+  + HERI TT  KAKE+R +A+ M+ LGK+G L A R+AA+++R   V+ KLFT +
Sbjct: 24  MVTSFLNHERITTTDVKAKELRSIAEKMITLGKKGDLHAMRQAASYIRDKKVVTKLFTAI 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
           A RY +RAGGYTR+++  IR GD AP++ IE V+ E
Sbjct: 84  APRYAERAGGYTRIIKLGIRPGDNAPLSVIELVEEE 119

Geobacter uraniireducens (strain Rf4) (taxid: 351605)

>sp|Q2RQY5|RL17_RHORT 50S ribosomal protein L17 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplQ PE=3 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 71/96 (73%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M + L+KHE+I+TT+ KAK++R +A+ ++ LGK G+L   R+A A +R D V+ KLF  L
Sbjct: 24  MAASLLKHEQIKTTLPKAKDLRPIAEKLITLGKGGTLHDRRQAHAILRDDAVVAKLFAVL 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
             RYKDR GGY+R+L++  R GDAAPMA IE VDR+
Sbjct: 84  GPRYKDRQGGYSRILKAGFRYGDAAPMAVIELVDRD 119

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

>sp|B9M6F1|RL17_GEOSF 50S ribosomal protein L17 OS=Geobacter sp. (strain FRC-32) GN=rplQ PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 69/94 (73%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MV+  + HERI TT AKAK +R +A+ M+ LGK+G L A R+AA+F+R   V+ KLFT +
Sbjct: 24  MVTSFLNHERITTTDAKAKGLRSIAEKMITLGKKGDLNAMRQAASFIRDKKVVTKLFTTI 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 94
           A RY +RAGGYTR+++  IR GD AP++ IE V+
Sbjct: 84  APRYAERAGGYTRIIKLGIRPGDNAPLSVIELVE 117

Geobacter sp. (strain FRC-32) (taxid: 316067)

>sp|B6JEX2|RL17_OLICO 50S ribosomal protein L17 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplQ PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 69/96 (71%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M + L+KHE+I TT+ KAKE+R + + +V LGK+G L   R+A + +R  D + KLF  L
Sbjct: 24  MAASLIKHEQIVTTLPKAKELRPIVEKLVTLGKKGGLALRRQAISELRDHDQVKKLFDAL 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
           A RYKDR GGYTR++++  R GD APMA IEFVDR+
Sbjct: 84  AARYKDRQGGYTRIIKAGFRYGDNAPMAVIEFVDRD 119

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) (taxid: 504832)

>sp|B6IRT1|RL17_RHOCS 50S ribosomal protein L17 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplQ PE=3 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 70/98 (71%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M + L+KHE+I+TT+ KAK++R + + ++ LGK+G L   R A A +R  D++ KLFT L
Sbjct: 24  MANALIKHEQIKTTLPKAKDLRPIVERLITLGKKGGLANKRLAYAELRDHDMVEKLFTTL 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENE 98
           A RYK R GGYTR+L++  R GDAAPM  IE VDR+ E
Sbjct: 84  AERYKGRPGGYTRVLKAGFRYGDAAPMGVIELVDRDPE 121

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|Q39XX8|RL17_GEOMG 50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplQ PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 71/96 (73%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MV+  ++HERI TT AKAKE+R +A+ M+ LGK G L A R+AA+++R   V+ KLF+ +
Sbjct: 24  MVTSFLEHERITTTDAKAKELRSIAEKMITLGKRGDLHAQRQAASYIRDKKVVTKLFSTI 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
           A RYK+R GGYTR+++  IR GD AP++ IE V+ +
Sbjct: 84  APRYKERDGGYTRIIKLGIRPGDNAPLSVIELVEEQ 119

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
224095978	160	predicted protein [Populus trichocarpa]	1.0	0.875	0.878	5e-68
297811075	160	ribosomal protein L17 family protein [Ar	1.0	0.875	0.871	3e-67
297797483	160	ribosomal protein L17 family protein [Ar	1.0	0.875	0.864	1e-66
26451578	146	putative 50S ribosomal protein L17 [Arab	1.0	0.958	0.835	6e-66
18424850	160	large subunit ribosomal protein L17 [Ara	1.0	0.875	0.835	7e-66
225431527	160	PREDICTED: 50S ribosomal protein L17 [Vi	1.0	0.875	0.914	1e-65
18416086	160	Ribosomal protein L17 family protein [Ar	1.0	0.875	0.85	4e-65
21555473	160	50S ribosomal protein L17 [Arabidopsis t	1.0	0.875	0.828	4e-65
224083430	160	predicted protein [Populus trichocarpa]	1.0	0.875	0.885	7e-65
255552384	160	ribosomal protein L17, putative [Ricinus	1.0	0.875	0.878	1e-63

>gi|224095978|ref|XP_002310514.1| predicted protein [Populus trichocarpa] gi|222853417|gb|EEE90964.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 133/140 (95%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQL+KHERIETTVAKAKE+RRLADNMVQLGKEGSLCA+RRAAAFVRGDDVIHKLF+EL
Sbjct: 21  MVSQLIKHERIETTVAKAKEIRRLADNMVQLGKEGSLCASRRAAAFVRGDDVIHKLFSEL 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           AYRYKDRAGGYTR+LR+RIRVGDAAPMAYIEF+DRENELRQSKP  PQPP RA +DPWTR
Sbjct: 81  AYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPPTPQPPQRAPMDPWTR 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRLT+  APPK+EKSSD EI
Sbjct: 141 SRLTRQCAPPKEEKSSDPEI 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811075|ref|XP_002873421.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319258|gb|EFH49680.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 131/140 (93%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQLVKHERIETTV KAKEVRRLADNMVQLGKEG+L AARRAA FVRGDDV+HK+FTEL
Sbjct: 21  MVSQLVKHERIETTVTKAKEVRRLADNMVQLGKEGTLAAARRAAGFVRGDDVLHKIFTEL 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           AYRYKDRAGGYTR+LR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPP R  LDPW R
Sbjct: 81  AYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPQRVPLDPWER 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRLTK FAPPK+EKSSD+E+
Sbjct: 141 SRLTKQFAPPKEEKSSDSEL 160

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797483|ref|XP_002866626.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata] gi|297312461|gb|EFH42885.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/140 (86%), Positives = 132/140 (94%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSL AARRAA FVRGDDV+HK+FTEL
Sbjct: 21  MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLAAARRAAGFVRGDDVLHKIFTEL 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           AYRYKDRAGGYTR+LR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPPPR  LDPW R
Sbjct: 81  AYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPPRVPLDPWAR 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRLT+ +APPK+EKS D+++
Sbjct: 141 SRLTRQYAPPKEEKSWDSDL 160

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451578|dbj|BAC42886.1| putative 50S ribosomal protein L17 [Arabidopsis thaliana]

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 117/140 (83%), Positives = 132/140 (94%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQLV+HERIETTV KAKEVRRLADNM+QLGKEGSL AARRAA FVRGDDV+HK+FTEL
Sbjct: 7   MVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAGFVRGDDVLHKIFTEL 66

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           A+RYKDRAGGYTR+LR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPPPR  LDPW R
Sbjct: 67  AHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPPRVPLDPWAR 126

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRLT+ +APPK+EK+SD+++
Sbjct: 127 SRLTRQYAPPKEEKTSDSDL 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424850|ref|NP_568992.1| large subunit ribosomal protein L17 [Arabidopsis thaliana] gi|107738052|gb|ABF83622.1| At5g64650 [Arabidopsis thaliana] gi|332010549|gb|AED97932.1| large subunit ribosomal protein L17 [Arabidopsis thaliana]

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/140 (83%), Positives = 132/140 (94%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQLV+HERIETTV KAKEVRRLADNM+QLGKEGSL AARRAA FVRGDDV+HK+FTEL
Sbjct: 21  MVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAGFVRGDDVLHKIFTEL 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           A+RYKDRAGGYTR+LR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPPPR  LDPW R
Sbjct: 81  AHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPPRVPLDPWAR 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRLT+ +APPK+EK+SD+++
Sbjct: 141 SRLTRQYAPPKEEKTSDSDL 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431527|ref|XP_002281739.1| PREDICTED: 50S ribosomal protein L17 [Vitis vinifera] gi|296088573|emb|CBI37564.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/140 (91%), Positives = 133/140 (95%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL
Sbjct: 21  MVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           AYRYKDRAGGYTRLLR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPP R  LDPWTR
Sbjct: 81  AYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPQRVPLDPWTR 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRL K FAPPK++KSSD EI
Sbjct: 141 SRLCKQFAPPKEDKSSDPEI 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416086|ref|NP_568216.1| Ribosomal protein L17 family protein [Arabidopsis thaliana] gi|21592350|gb|AAM64301.1| ribsomal protein-like [Arabidopsis thaliana] gi|27808520|gb|AAO24540.1| At5g09770 [Arabidopsis thaliana] gi|110736202|dbj|BAF00072.1| ribsomal protein - like [Arabidopsis thaliana] gi|332004061|gb|AED91444.1| Ribosomal protein L17 family protein [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/140 (85%), Positives = 129/140 (92%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQLVKHERIETTV KAKEVRRLADNM+QLGKEGSL AARRAA FVRGDDV+HK+FTEL
Sbjct: 21  MVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAGFVRGDDVLHKIFTEL 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           A+RYKDRAGGYTRLLR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPP R  LDPW R
Sbjct: 81  AHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPQRVPLDPWER 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRLT+ FAPPK+EK  D+E+
Sbjct: 141 SRLTRQFAPPKEEKIPDSEL 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555473|gb|AAM63867.1| 50S ribosomal protein L17 [Arabidopsis thaliana]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/140 (82%), Positives = 131/140 (93%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQLV+HERIETTV KA EVRRLADNM+QLGKEGSL AARRAA FVRGDDV+HK+FTEL
Sbjct: 21  MVSQLVQHERIETTVTKAIEVRRLADNMIQLGKEGSLAAARRAAGFVRGDDVLHKIFTEL 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           A+RYKDRAGGYTR+LR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPPPR  LDPW R
Sbjct: 81  AHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPPRVPLDPWAR 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRLT+ +APPK+EK+SD+++
Sbjct: 141 SRLTRQYAPPKEEKTSDSDL 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083430|ref|XP_002307023.1| predicted protein [Populus trichocarpa] gi|222856472|gb|EEE94019.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 134/140 (95%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           +VSQL+KHERIETTVAKAKE+RRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLF+E+
Sbjct: 21  LVSQLIKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFSEM 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           AYRYKDRAGGYTR+LR+RIRVGDAAPMAYIEF+DRENELRQSKP  PQPP RA LDPWTR
Sbjct: 81  AYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPPTPQPPQRAPLDPWTR 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRLT+ FAPPK+EKSSD EI
Sbjct: 141 SRLTRQFAPPKEEKSSDPEI 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552384|ref|XP_002517236.1| ribosomal protein L17, putative [Ricinus communis] gi|223543607|gb|EEF45136.1| ribosomal protein L17, putative [Ricinus communis]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 132/140 (94%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           MVSQLVKHERIETT+AKAKE+RRLADNMVQLGKEGSLCAARRAAAFVRGDDV+HKLFTEL
Sbjct: 21  MVSQLVKHERIETTIAKAKEIRRLADNMVQLGKEGSLCAARRAAAFVRGDDVLHKLFTEL 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
           AYRYKDR GGYTRLLR+RIRVGDAAPMAYIEF+DRENELR+SKP  PQPP R  LDPWTR
Sbjct: 81  AYRYKDREGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRKSKPPTPQPPQRDPLDPWTR 140

Query: 121 SRLTKNFAPPKQEKSSDAEI 140
           SRL+K FAPPK+EKSS+ EI
Sbjct: 141 SRLSKQFAPPKEEKSSEPEI 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2174804	160	AT5G64650 [Arabidopsis thalian	1.0	0.875	0.835	1e-61
TAIR|locus:2144821	160	AT5G09770 [Arabidopsis thalian	1.0	0.875	0.85	4.3e-61
TIGR_CMR|GSU_2830	175	GSU_2830 "ribosomal protein L1	0.764	0.611	0.504	3.3e-24
TIGR_CMR|SPO_0512	140	SPO_0512 "ribosomal protein L1	0.685	0.685	0.531	2.6e-22
TIGR_CMR|SO_0257	131	SO_0257 "ribosomal protein L17	0.678	0.725	0.547	1.1e-21
UNIPROTKB|P0AG44	127	rplQ "50S ribosomal subunit pr	0.7	0.771	0.489	3.5e-20
UNIPROTKB|Q9KP09	128	rplQ "50S ribosomal protein L1	0.678	0.742	0.515	5.7e-20
TIGR_CMR|CPS_0627	134	CPS_0627 "ribosomal protein L1	0.678	0.708	0.526	5.7e-20
TIGR_CMR|VC_2570	128	VC_2570 "ribosomal protein L17	0.678	0.742	0.515	5.7e-20
TAIR|locus:2080335	211	AT3G54210 [Arabidopsis thalian	0.664	0.440	0.473	6.5e-19

TAIR|locus:2174804 AT5G64650 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 117/140 (83%), Positives = 132/140 (94%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             MVSQLV+HERIETTV KAKEVRRLADNM+QLGKEGSL AARRAA FVRGDDV+HK+FTEL
Sbjct:    21 MVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAGFVRGDDVLHKIFTEL 80

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
             A+RYKDRAGGYTR+LR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPPPR  LDPW R
Sbjct:    81 AHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPPRVPLDPWAR 140

Query:   121 SRLTKNFAPPKQEKSSDAEI 140
             SRLT+ +APPK+EK+SD+++
Sbjct:   141 SRLTRQYAPPKEEKTSDSDL 160

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2144821 AT5G09770 [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 119/140 (85%), Positives = 129/140 (92%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             MVSQLVKHERIETTV KAKEVRRLADNM+QLGKEGSL AARRAA FVRGDDV+HK+FTEL
Sbjct:    21 MVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAGFVRGDDVLHKIFTEL 80

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTR 120
             A+RYKDRAGGYTRLLR+RIRVGDAAPMAYIEF+DRENELRQSKPA PQPP R  LDPW R
Sbjct:    81 AHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPATPQPPQRVPLDPWER 140

Query:   121 SRLTKNFAPPKQEKSSDAEI 140
             SRLT+ FAPPK+EK  D+E+
Sbjct:   141 SRLTRQFAPPKEEKIPDSEL 160

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TIGR_CMR|GSU_2830 GSU_2830 "ribosomal protein L17" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 55/109 (50%), Positives = 78/109 (71%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA+++R   V+ KLF+ +
Sbjct:    24 MVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAASYIRDKKVVTKLFSTI 83

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR--ENELRQSKPAVP 107
             A RYK+R GGYTR+++  IR GD AP++ IE V+   E ++++SKP  P
Sbjct:    84 APRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKSKPTAP 132

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SPO_0512 SPO_0512 "ribosomal protein L17" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 51/96 (53%), Positives = 69/96 (71%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             M   L++HE+I+TT+ KAKE+R + + ++ LGK G L A R+AAA ++ D  + KLF  L
Sbjct:    24 MAGSLIEHEQIKTTLPKAKELRPIVEKLITLGKRGDLHARRQAAAQLKEDKDVAKLFDVL 83

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
             A RYKDR GGY R+L++  R GD APMA IEFVDR+
Sbjct:    84 AERYKDRQGGYVRILKAGFRYGDMAPMAIIEFVDRD 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042255 "ribosome assembly" evidence=ISS

TIGR_CMR|SO_0257 SO_0257 "ribosomal protein L17" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 52/95 (54%), Positives = 67/95 (70%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             M S LV+HE I+TTVAKAKE+RR+ + ++ L K  S+   R A A  R  +V+ KLFTEL
Sbjct:    24 MASSLVRHEIIKTTVAKAKELRRVVEPLITLAKSDSVANRRLAFARTRDAEVVGKLFTEL 83

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 95
               RY++R GGYTR+L+  +R GD APMAYIE V R
Sbjct:    84 GPRYQERPGGYTRILKCGLRAGDKAPMAYIELVGR 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0AG44 rplQ "50S ribosomal subunit protein L17" [Escherichia coli K-12 (taxid:83333)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 48/98 (48%), Positives = 65/98 (66%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL
Sbjct:    24 MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNEL 83

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENE 98
               R+  RAGGYTR+L+   R GD APMAYIE VDR  +
Sbjct:    84 GPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|Q9KP09 rplQ "50S ribosomal protein L17" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 49/95 (51%), Positives = 64/95 (67%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++V+ KLF EL
Sbjct:    24 MASSLVRHEVIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEVVAKLFNEL 83

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 95
               R+  R GGYTR+L+   R GD APMAYIE VDR
Sbjct:    84 GPRFAARQGGYTRILKCGFRAGDKAPMAYIELVDR 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_0627 CPS_0627 "ribosomal protein L17" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 50/95 (52%), Positives = 64/95 (67%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             M S LVKH  I+TTVAKAKE+RR+ + ++ L K  S+   R A A  +  +V+  LF EL
Sbjct:    24 MASSLVKHGVIKTTVAKAKELRRVLEPLITLAKTDSVANRRLAFARTQDKEVVGILFNEL 83

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 95
               RY++R GGYTR+L+   R GD APMAYIE VDR
Sbjct:    84 GARYQERPGGYTRILKCGFRTGDKAPMAYIELVDR 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|VC_2570 VC_2570 "ribosomal protein L17" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 49/95 (51%), Positives = 64/95 (67%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             M S LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++V+ KLF EL
Sbjct:    24 MASSLVRHEVIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEVVAKLFNEL 83

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 95
               R+  R GGYTR+L+   R GD APMAYIE VDR
Sbjct:    84 GPRFAARQGGYTRILKCGFRAGDKAPMAYIELVDR 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TAIR|locus:2080335 AT3G54210 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 44/93 (47%), Positives = 63/93 (67%)

Query:     1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             + +QL+KH RI+TT A+A  +R+  D M+ L K+GSL   R+A  ++    ++H LF E+
Sbjct:   119 LTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEV 178

Query:    61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
               RY +R GGYTR++R+  R GD APMAYIE V
Sbjct:   179 PDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1QN05	RL17_NITHX	No assigned EC number	0.5312	0.6857	0.6956	yes	no
A0KRQ0	RL17_SHESA	No assigned EC number	0.5473	0.6785	0.7251	yes	no
Q04BY8	RL17_LACDB	No assigned EC number	0.5185	0.6642	0.7322	yes	no
Q89JA8	RL17_BRAJA	No assigned EC number	0.5208	0.6857	0.6956	yes	no
A9NEG1	RL17_ACHLI	No assigned EC number	0.5252	0.6642	0.7815	yes	no
O50635	RL17_BACHD	No assigned EC number	0.5247	0.6642	0.775	yes	no
Q0I079	RL17_SHESR	No assigned EC number	0.5473	0.6785	0.7251	yes	no
Q5LW31	RL17_RUEPO	No assigned EC number	0.5312	0.6857	0.6857	yes	no
Q211H3	RL17_RHOPB	No assigned EC number	0.5104	0.6857	0.7111	yes	no
A1ALW8	RL17_PELPD	No assigned EC number	0.5520	0.6857	0.7559	yes	no
Q0BUM5	RL17_GRABC	No assigned EC number	0.5208	0.6857	0.6956	yes	no
B7GJ95	RL17_ANOFW	No assigned EC number	0.5148	0.6642	0.775	yes	no
B6EPV0	RL17_ALISL	No assigned EC number	0.5368	0.6785	0.7539	yes	no
B6IRT1	RL17_RHOCS	No assigned EC number	0.5204	0.7	0.7050	yes	no
A4YBV7	RL17_SHEPC	No assigned EC number	0.5473	0.6785	0.7251	yes	no
A9KWC7	RL17_SHEB9	No assigned EC number	0.5368	0.6785	0.7251	yes	no
A0L5Z9	RL17_MAGSM	No assigned EC number	0.5670	0.6857	0.7619	yes	no
Q3SSU1	RL17_NITWN	No assigned EC number	0.5306	0.7	0.7101	yes	no
Q0AUL0	RL17_SYNWW	No assigned EC number	0.5053	0.6642	0.8230	yes	no
A3DA46	RL17_SHEB5	No assigned EC number	0.5368	0.6785	0.7251	yes	no
A3Q9A8	RL17_SHELP	No assigned EC number	0.5368	0.6785	0.7307	yes	no
B3E858	RL17_GEOLS	No assigned EC number	0.5531	0.6714	0.7580	yes	no
A6WHV4	RL17_SHEB8	No assigned EC number	0.5368	0.6785	0.7251	yes	no
B0TLY7	RL17_SHEHH	No assigned EC number	0.5263	0.6785	0.7307	yes	no
Q5E888	RL17_VIBF1	No assigned EC number	0.5368	0.6785	0.7539	yes	no
Q2RQY5	RL17_RHORT	No assigned EC number	0.5312	0.6857	0.6857	yes	no
Q9S0Q7	RL17_SHEVD	No assigned EC number	0.5368	0.6785	0.7251	yes	no
A5FZU0	RL17_ACICJ	No assigned EC number	0.5416	0.6857	0.6575	yes	no
A5ELK2	RL17_BRASB	No assigned EC number	0.4736	0.8142	0.8321	yes	no
B5FGE2	RL17_VIBFM	No assigned EC number	0.5368	0.6785	0.7539	yes	no
A4YSL7	RL17_BRASO	No assigned EC number	0.4736	0.8142	0.8321	yes	no
B6JEX2	RL17_OLICO	No assigned EC number	0.5312	0.6857	0.6906	yes	no
B8EBH9	RL17_SHEB2	No assigned EC number	0.5368	0.6785	0.7251	yes	no
Q749B4	RL17_GEOSL	No assigned EC number	0.5045	0.7642	0.6114	yes	no
Q0HNR1	RL17_SHESM	No assigned EC number	0.5473	0.6785	0.7251	yes	no
A1REE0	RL17_SHESW	No assigned EC number	0.5473	0.6785	0.7251	yes	no
C0ZIK8	RL17_BREBN	No assigned EC number	0.55	0.6642	0.7815	yes	no
Q8EK46	RL17_SHEON	No assigned EC number	0.5473	0.6785	0.7251	yes	no
A0LIL8	RL17_SYNFM	No assigned EC number	0.5161	0.6642	0.6158	yes	no
Q134V4	RL17_RHOPS	No assigned EC number	0.4824	0.8071	0.8308	yes	no
B1KM34	RL17_SHEWM	No assigned EC number	0.5368	0.6785	0.7196	yes	no
Q5WLN4	RL17_BACSK	No assigned EC number	0.5346	0.6642	0.775	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam01196	97	pfam01196, Ribosomal_L17, Ribosomal protein L17	5e-45
PRK05591	113	PRK05591, rplQ, 50S ribosomal protein L17; Validat	8e-45
COG0203	116	COG0203, RplQ, Ribosomal protein L17 [Translation,	2e-40
TIGR00059	112	TIGR00059, L17, ribosomal protein L17	2e-32
PTZ00076	253	PTZ00076, PTZ00076, 60S ribosomal protein L17; Pro	3e-18

>gnl|CDD|216356 pfam01196, Ribosomal_L17, Ribosomal protein L17

 Score =  141 bits (359), Expect = 5e-45
 Identities = 49/93 (52%), Positives = 68/93 (73%)

Query: 1  MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
          + + L++HERIETT+AKAKE+R  A+ ++ L K+G L A R+A +F+R  +++ KLF EL
Sbjct: 5  LATSLIRHERIETTLAKAKELRPYAEKLITLAKKGDLHARRQALSFLRDKELVKKLFDEL 64

Query: 61 AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
          A RY DR GGYTR+++   R GD APMA IE V
Sbjct: 65 APRYADRNGGYTRIIKLGPRRGDNAPMAIIELV 97

Length = 97

>gnl|CDD|235522 PRK05591, rplQ, 50S ribosomal protein L17; Validated

 Score =  141 bits (359), Expect = 8e-45
 Identities = 49/93 (52%), Positives = 67/93 (72%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           + + L++HERIETT+ KAKE+RR+ + ++ L K+G L A R+A A +R  + +HKLF E+
Sbjct: 21  LATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHARRQAFARLRDKEAVHKLFDEI 80

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
           A RY DR GGYTR+L+   R GD APMA IE V
Sbjct: 81  APRYADRNGGYTRILKLGFRRGDNAPMAIIELV 113

Length = 113

>gnl|CDD|223281 COG0203, RplQ, Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

 Score =  130 bits (330), Expect = 2e-40
 Identities = 47/93 (50%), Positives = 64/93 (68%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           + + L++HERIETT+ KAKE+RR+ + ++ L K+G L   R A A +R  D + KLF E+
Sbjct: 24  LATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANRRLAFARLRDKDAVKKLFDEI 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
           A RY +R GGYTR+L+   R GD APMA IE V
Sbjct: 84  APRYAERNGGYTRILKLGFRRGDNAPMAIIELV 116

Length = 116

>gnl|CDD|129169 TIGR00059, L17, ribosomal protein L17

 Score =  110 bits (277), Expect = 2e-32
 Identities = 46/94 (48%), Positives = 67/94 (71%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           + S L++HE+I+TT+AKAKE+RR+ + ++ L K  +    R A A++R  +++HKLF+E+
Sbjct: 19  LASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREAKAYIRNKEIVHKLFSEI 78

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVD 94
           A RY  R GGYTR+L+   R GDAA MA IE VD
Sbjct: 79  APRYAQRPGGYTRILKLGPRRGDAAEMAIIELVD 112

Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 112

>gnl|CDD|173371 PTZ00076, PTZ00076, 60S ribosomal protein L17; Provisional

 Score = 77.5 bits (191), Expect = 3e-18
 Identities = 37/104 (35%), Positives = 67/104 (64%), Gaps = 1/104 (0%)

Query: 2   VSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELA 61
           + +L+++ R+E T+ +AKE+++ A+ ++ L K+ +  +  +  + +R      KL+ +  
Sbjct: 37  LDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKVESMLRTPQGRRKLYEKYV 96

Query: 62  YRYKDRAGGYTRLLRS-RIRVGDAAPMAYIEFVDRENELRQSKP 104
             Y+DR   +TR++   R+R+ DAAPMAYIEFVDR  E+R +KP
Sbjct: 97  PLYRDRPFFFTRVVNQWRLRLRDAAPMAYIEFVDRPGEIRPAKP 140

Length = 253

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
TIGR00059	112	L17 ribosomal protein L17. Eubacterial and mitocho	100.0
COG0203	116	RplQ Ribosomal protein L17 [Translation, ribosomal	100.0
PRK05591	113	rplQ 50S ribosomal protein L17; Validated	100.0
PF01196	97	Ribosomal_L17: Ribosomal protein L17; InterPro: IP	100.0
PTZ00076	253	60S ribosomal protein L17; Provisional	100.0
KOG3280	171	consensus Mitochondrial/chloroplast ribosomal prot	100.0

>TIGR00059 L17 ribosomal protein L17

Probab=100.00  E-value=4.8e-47  Score=281.87  Aligned_cols=94  Identities=49%  Similarity=0.829  Sum_probs=93.0

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      |+||||+||||+||++||||+|+|||+|||+||+|++|++|++.+||.|+++++|||++|+|||++|+||||||+|+++|
T Consensus        19 l~tsLi~herI~TT~~KAKelr~~aEklIt~AK~~~~~~rR~~~~~l~~~~~v~KLf~~lapry~~R~GGYTRI~kl~~R   98 (112)
T TIGR00059        19 LASALIRHEKIKTTLAKAKELRRVVEKLITLAKVDNFNNRREAKAYIRNKEIVHKLFSEIAPRYAQRPGGYTRILKLGPR   98 (112)
T ss_pred             HHHHHHHCCeEEECHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeEEEEECCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEeec
Q 032454           81 VGDAAPMAYIEFVD   94 (140)
Q Consensus        81 ~GD~A~maiIELVd   94 (140)
                      .||+||||||||||
T Consensus        99 ~gD~A~maiiElVd  112 (112)
T TIGR00059        99 RGDAAEMAIIELVD  112 (112)
T ss_pred             CCCCCCeEEEEecC
Confidence            99999999999996

Eubacterial and mitochondrial. The mitochondrial form, from yeast, contains an additional 110 amino acids C-terminal to the region found by this model.

>COG0203 RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.1e-47  Score=281.28  Aligned_cols=93  Identities=51%  Similarity=0.828  Sum_probs=92.1

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      |++|||+||+|+||++||||+|+++|+|||+||+|++|++|+|.++|.|+++++|||++|+|||.+|+||||||+|+|+|
T Consensus        24 la~sLi~he~I~TT~~KAKelr~~vEkLITlaK~~~l~~RR~a~~~l~d~~~v~kLF~~iapry~~R~GGYtRIlK~g~R  103 (116)
T COG0203          24 LATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLANRRLAFARLRDKDAVKKLFDEIAPRYAERNGGYTRILKLGFR  103 (116)
T ss_pred             HHHHHHHcCceeecHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHcccHHHHHHHHHHhChhhcCCCCCeeEEEecCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEee
Q 032454           81 VGDAAPMAYIEFV   93 (140)
Q Consensus        81 ~GD~A~maiIELV   93 (140)
                      .||+|||||||||
T Consensus       104 ~GD~A~maiiElV  116 (116)
T COG0203         104 RGDNAPMAIIELV  116 (116)
T ss_pred             CCCCCceEEEEeC
Confidence            9999999999997

>PRK05591 rplQ 50S ribosomal protein L17; Validated

Probab=100.00  E-value=1.9e-46  Score=279.01  Aligned_cols=93  Identities=53%  Similarity=0.864  Sum_probs=92.1

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      ||||||+||||+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++++|||++|+|||++|+||||||+|+++|
T Consensus        21 l~tsLi~herI~TT~~KAKelr~~aEklIt~aK~~~~~~rR~~~~~L~~~~~v~KLf~~lapry~~R~GGYTRI~k~~~R  100 (113)
T PRK05591         21 LATSLIEHERIETTLPKAKELRRVVEKLITLAKKGDLHARRQAFARLRDKEAVHKLFDEIAPRYADRNGGYTRILKLGFR  100 (113)
T ss_pred             HHHHHHHcCeEEecHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhCcCCCCeEEEEECCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEee
Q 032454           81 VGDAAPMAYIEFV   93 (140)
Q Consensus        81 ~GD~A~maiIELV   93 (140)
                      .||+|||||||||
T Consensus       101 ~gD~A~ma~iElV  113 (113)
T PRK05591        101 RGDNAPMAIIELV  113 (113)
T ss_pred             CCCCCCeEEEEeC
Confidence            9999999999997

>PF01196 Ribosomal_L17: Ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.8e-46  Score=272.30  Aligned_cols=93  Identities=54%  Similarity=0.876  Sum_probs=91.1

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      |||+||+||||+||++||||+|+|||+|||+||+|++|+++++.+||.|+++++|||++|+|||++|+||||||+|+++|
T Consensus         5 lvt~Li~herI~TT~~KAke~r~~aErlIt~ak~~~~~~~r~~~~~l~~~~~v~KLf~~l~pRy~~r~GgYTRi~kl~~R   84 (97)
T PF01196_consen    5 LVTSLIRHERIETTLAKAKELRPYAERLITLAKKGDLHARRQALSWLRDKELVKKLFKELAPRYADRNGGYTRIIKLGPR   84 (97)
T ss_dssp             HHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHCSSSHHHHHHHHTTHHHHTTTSSS-SEEEEEEEEC
T ss_pred             HHHHHHhCCeEEecHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHHHccCCCCeEEEEeCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEee
Q 032454           81 VGDAAPMAYIEFV   93 (140)
Q Consensus        81 ~GD~A~maiIELV   93 (140)
                      .||+|||||||||
T Consensus        85 ~gD~A~maiiElV   97 (97)
T PF01196_consen   85 RGDAAPMAIIELV   97 (97)
T ss_dssp             SSSTCEEEEEEET
T ss_pred             CCCCCCEEEEEeC
Confidence            9999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L17 is one of the proteins from the large ribosomal subunit. Bacterial L17 is a protein of 120 to 130 amino-acid residues while yeast YmL8 is twice as large (238 residues). The N-terminal half of YmL8 is colinear with the sequence of L17 from Escherichia coli.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3F1F_R 1VSP_L 3PYV_N 3PYR_N 3PYO_N 1VSA_L 3MS1_N 3F1H_R 3D5B_R 3MRZ_N ....

>PTZ00076 60S ribosomal protein L17; Provisional

Probab=100.00  E-value=3.1e-44  Score=295.78  Aligned_cols=110  Identities=34%  Similarity=0.544  Sum_probs=105.5

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcc-cC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRS-RI   79 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl-~~   79 (140)
                      |+||||+||||+||++||||+|+|||+|||+||+|++|++|+|.++|.|+++++|||++|+|||++|+||||||+|+ ++
T Consensus        36 LvtsLI~hERIeTTlaKAKELR~~AEKLITlAKk~tl~sRR~a~s~L~d~~av~KLF~eLAPRY~dR~GGYTRIlK~~g~  115 (253)
T PTZ00076         36 QLDELLRYGRLELTLPRAKELQQYAEELIYLAKKDTPESNLKVESMLRTPQGRRKLYEKYVPLYRDRPFFFTRVVNQWRL  115 (253)
T ss_pred             HHHHHHHcCcEEecHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHHhhhHhcCCCCCeeEEEeCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999997 69


Q ss_pred             CCCCCCCeeEEEeecCchhhhcCCCCCCCCC
Q 032454           80 RVGDAAPMAYIEFVDRENELRQSKPAVPQPP  110 (140)
Q Consensus        80 R~GD~A~maiIELVd~~~~~~~~~~~~~~~~  110 (140)
                      |.||+||||||||||+|.++++++|++....
T Consensus       116 R~GD~ApMAiIELVd~p~e~r~A~pvg~d~~  146 (253)
T PTZ00076        116 RLRDAAPMAYIEFVDRPGEIRPAKPVGFDKI  146 (253)
T ss_pred             CCCCCCCEEEEEeccCcCccccccccchhHH
Confidence            9999999999999999999999888875543

>KOG3280 consensus Mitochondrial/chloroplast ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.9e-44  Score=280.41  Aligned_cols=134  Identities=53%  Similarity=0.776  Sum_probs=125.2

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhh-cCCCHHHH--HHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcc
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLG-KEGSLCAA--RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRS   77 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~A-K~g~~~~~--r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl   77 (140)
                      |||+||+||||+|||+||||+|+|||+|||+| |.|++|.+  +++.+||..+++++|||++|+|||.+|+|||||++|+
T Consensus        31 lvt~LvkHErIe~t~ara~Ear~~aEklIt~~~k~g~~~~~~~~~a~~~l~ekdli~KlF~vl~pRY~dr~ggYTRllrl  110 (171)
T KOG3280|consen   31 LVTQLVKHERIETTWARAKEARRYAEKLITLGKKAGSLHERTARMADGWLREKDLLHKLFTVLAPRYKDRNGGYTRLLRL  110 (171)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCcHhHHHHHHHhcccccchHHHHHHHHhchhhccCCCCceehhcc
Confidence            68999999999999999999999999999999 78999987  9999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCeeEEEeecCchhhhcCCCCCCCCCCCCCCCHHHHHHhhhhcCCCcCCcCCCc
Q 032454           78 RIRVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQEKSSDA  138 (140)
Q Consensus        78 ~~R~GD~A~maiIELVd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  138 (140)
                      .+|.||+|||||||+++|+.    ....+.-+.++.+|.+|++..|.++|.+|++|+-.+.
T Consensus       111 ppr~~d~apmavlE~~Gn~~----p~~~a~~p~~r~~lh~vll~~l~r~~~~~~~e~l~~~  167 (171)
T KOG3280|consen  111 PPRRGDRAPMAVLELVGNPL----PQQAADRPDTRVNLHKVLLFRLLREFRPPKEEKLDDS  167 (171)
T ss_pred             CcccccccCceeeeecCCcc----ccccCCCchhhhhhHHHHHHHHHHHhccchhhcccCc
Confidence            99999999999999998764    4566777788889999999999999999999986553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
1p85_L	127	Real Space Refined Coordinates Of The 50s Subunit F		3e-21
3bbo_P	205	Homology Model For The Spinach Chloroplast 50s Subu		3e-21
3fik_N	120	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		3e-21
2gya_L	114	Structure Of The 50s Subunit Of A Pre-Translocation		6e-20
1gd8_A	118	The Crystal Structure Of Bacteria-Specific L17 Ribo		2e-15
3fin_R	117	T. Thermophilus 70s Ribosome In Complex With Mrna,		2e-15
1pnu_L	114	Crystal Structure Of A Streptomycin Dependent Ribos		2e-13
1nkw_L	116	Crystal Structure Of The Large Ribosomal Subunit Fr		3e-13
2cqm_A	122	Solution Structure Of The Mitochondrial Ribosomal P		1e-12
2ftc_J	116	Structural Model For The Large Subunit Of The Mamma		1e-12

>pdb|1P85|L Chain L, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 127

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 64/95 (67%)
Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL
Sbjct: 24  MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNEL 83
Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 95
             R+  RAGGYTR+L+   R GD APMAYIE VDR
Sbjct: 84  GPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDR 118

>pdb|3BBO|P Chain P, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 205

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 64/93 (68%)
Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           + +QL+KH RI+TT A+A+ VR+  D M+ + K+GSL   R+A  F+    ++H LF E+
Sbjct: 113 LTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEV 172
Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
             RY +R GGYTR++R+  R GD APMAYIE V
Sbjct: 173 PDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205

>pdb|3FIK|N Chain N, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 120

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 64/95 (67%)
Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL
Sbjct: 24  MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNEL 83
Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 95
             R+  RAGGYTR+L+   R GD APMAYIE VDR
Sbjct: 84  GPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDR 118

>pdb|2GYA|L Chain L, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 114

Iteration: 1
 Score = 92.8 bits (229), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 62/93 (66%)
Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL
Sbjct: 22  MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNEL 81
Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
             R+  RAGGYTR+L+   R GD APMAYIE V
Sbjct: 82  GPRFASRAGGYTRILKCGFRAGDNAPMAYIELV 114

>pdb|1GD8|A Chain A, The Crystal Structure Of Bacteria-Specific L17 Ribosomal Protein. Length = 118

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 5   LVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRY 64
           L+ H RI TTV KAKE+R   D+++ L K G L A R     ++   ++ KLF E+A RY
Sbjct: 28  LLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRY 87
Query: 65  KDRAGGYTRLLR-SRIRVGDAAPMAYIEFVD 94
           +DR GGYTR+L+ +  R GD AP+A +E V+
Sbjct: 88  RDRQGGYTRVLKLAERRRGDGAPLALVELVE 118

>pdb|3FIN|R Chain R, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 117

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 5   LVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRY 64
           L+ H RI TTV KAKE+R   D+++ L K G L A R     ++   ++ KLF E+A RY
Sbjct: 27  LLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRY 86
Query: 65  KDRAGGYTRLLR-SRIRVGDAAPMAYIEFVD 94
           +DR GGYTR+L+ +  R GD AP+A +E V+
Sbjct: 87  RDRQGGYTRVLKLAERRRGDGAPLALVELVE 117

>pdb|1PNU|L Chain L, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 114

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 54/91 (59%)
Query: 3   SQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAY 62
           + L++  RI+TT+ KAKE+R   + ++   K G L + R  A  +   DV+ K+  E+A 
Sbjct: 24  TALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAP 83
Query: 63  RYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
           +Y +R GGYTR+LR   R GD   MA IE V
Sbjct: 84  KYAERPGGYTRILRVGTRRGDGVTMALIELV 114

>pdb|1NKW|L Chain L, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 116

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 54/91 (59%)
Query: 3   SQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAY 62
           + L++  RI+TT+ KAKE+R   + ++   K G L + R  A  +   DV+ K+  E+A 
Sbjct: 26  TALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAP 85
Query: 63  RYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
           +Y +R GGYTR+LR   R GD   MA IE V
Sbjct: 86  KYAERPGGYTRILRVGTRRGDGVTMALIELV 116

>pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein L17 Isolog Length = 122

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVIHKLFT 58
           +++ LV+HERIE   A+  E+R  A+ ++  GK G     A R A  ++   D+I KLF 
Sbjct: 12  LLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQ 71
Query: 59  ELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEF 92
            LA RYKD+ GGYTR+L+   R  D A MA IE+
Sbjct: 72  VLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEY 105

>pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 116

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVIHKLFT 58
           +++ LV+HERIE   A+  E+R  A+ ++  GK G     A R A  ++   D+I KLF 
Sbjct: 22  LLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQ 81
Query: 59  ELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEF 92
            LA RYKD+ GGYTR+L+   R  D A MA IE+
Sbjct: 82  VLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEY 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
3r8s_N	120	50S ribosomal protein L17; protein biosynthesis, R	5e-47
2cqm_A	122	Ribosomal protein L17 isolog; alpha and beta (A+B)	5e-45
2zjr_K	116	50S ribosomal protein L17; ribosome, large ribosom	1e-42
1gd8_A	118	50S ribosomal protein L17; two domains, ribosomal	2e-42
3bbo_P	205	Ribosomal protein L17; large ribosomal subunit, sp	2e-41

>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N ... Length = 120

 Score =  146 bits (372), Expect = 5e-47
 Identities = 48/95 (50%), Positives = 64/95 (67%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL
Sbjct: 24  MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNEL 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 95
             R+  RAGGYTR+L+   R GD APMAYIE VDR
Sbjct: 84  GPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDR 118

>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S Length = 122

 Score =  142 bits (360), Expect = 5e-45
 Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 2/98 (2%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCA--ARRAAAFVRGDDVIHKLFT 58
           +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++   D+I KLF 
Sbjct: 12  LLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQ 71

Query: 59  ELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
            LA RYKD+ GGYTR+L+   R  D A MA IE+    
Sbjct: 72  VLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNC 109

>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O Length = 116

 Score =  135 bits (343), Expect = 1e-42
 Identities = 37/93 (39%), Positives = 54/93 (58%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             + L++  RI+TT+ KAKE+R   + ++   K G L + R  A  +   DV+ K+  E+
Sbjct: 24  QATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEV 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
           A +Y +R GGYTR+LR   R GD   MA IE V
Sbjct: 84  APKYAERPGGYTRILRVGTRRGDGVTMALIELV 116

>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ... Length = 118

 Score =  135 bits (342), Expect = 2e-42
 Identities = 42/95 (44%), Positives = 58/95 (61%), Gaps = 1/95 (1%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
               L+ H RI TTV KAKE+R   D+++ L K G L A R     ++   ++ KLF E+
Sbjct: 24  QAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEI 83

Query: 61  AYRYKDRAGGYTRLLRS-RIRVGDAAPMAYIEFVD 94
           A RY+DR GGYTR+L+    R GD AP+A +E V+
Sbjct: 84  APRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 118

>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 205

 Score =  135 bits (342), Expect = 2e-41
 Identities = 45/93 (48%), Positives = 64/93 (68%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           + +QL+KH RI+TT A+A+ VR+  D M+ + K+GSL   R+A  F+    ++H LF E+
Sbjct: 113 LTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEV 172

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 93
             RY +R GGYTR++R+  R GD APMAYIE V
Sbjct: 173 PDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3r8s_N	120	50S ribosomal protein L17; protein biosynthesis, R	100.0
2cqm_A	122	Ribosomal protein L17 isolog; alpha and beta (A+B)	100.0
1gd8_A	118	50S ribosomal protein L17; two domains, ribosomal	100.0
2zjr_K	116	50S ribosomal protein L17; ribosome, large ribosom	100.0
3bbo_P	205	Ribosomal protein L17; large ribosomal subunit, sp	100.0

>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...

Probab=100.00  E-value=1.1e-48  Score=292.68  Aligned_cols=96  Identities=50%  Similarity=0.810  Sum_probs=94.6

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      |+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+|||++|+||||||+|+|+|
T Consensus        24 l~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~elapry~~R~GGYTRI~K~~~R  103 (120)
T 3r8s_N           24 MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFR  103 (120)
T ss_dssp             HHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHHHHTTTCCSCCEEEEEEEEC
T ss_pred             HHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEeecCc
Q 032454           81 VGDAAPMAYIEFVDRE   96 (140)
Q Consensus        81 ~GD~A~maiIELVd~~   96 (140)
                      .||+||||||||||++
T Consensus       104 ~GD~A~maiiELVd~~  119 (120)
T 3r8s_N          104 AGDNAPMAYIELVDRS  119 (120)
T ss_dssp             TTTCCEEEEEEESSCC
T ss_pred             CCCCcCeEEEEEecCC
Confidence            9999999999999974

>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S

Probab=100.00  E-value=3.4e-48  Score=290.63  Aligned_cols=96  Identities=43%  Similarity=0.627  Sum_probs=93.7

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHH--HHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEccc
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLC--AARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSR   78 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~--~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~   78 (140)
                      |+|+||+||||+||++||||+|+|||+|||+||+|++|  ++|++.+||.|+++|+|||++|+|||++|+||||||+|++
T Consensus        12 l~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~R~GGYTRI~K~~   91 (122)
T 2cqm_A           12 LLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIP   91 (122)
T ss_dssp             HHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSCSCCEEEEEEC
T ss_pred             HHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCCeeEEEECC
Confidence            68999999999999999999999999999999999998  5799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeEEEeecCc
Q 032454           79 IRVGDAAPMAYIEFVDRE   96 (140)
Q Consensus        79 ~R~GD~A~maiIELVd~~   96 (140)
                      +|.||+||||||||||+|
T Consensus        92 ~R~GD~A~maiIELVd~p  109 (122)
T 2cqm_A           92 NRSLDRAKMAVIEYKGNC  109 (122)
T ss_dssp             CCSSSCCCEEEEEESSCC
T ss_pred             CCCCCCCCeEEEEeCCCC
Confidence            999999999999999985

>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...

Probab=100.00  E-value=3.5e-48  Score=289.16  Aligned_cols=94  Identities=45%  Similarity=0.722  Sum_probs=93.0

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEccc-C
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSR-I   79 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~-~   79 (140)
                      |+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+|||++|+||||||+|++ +
T Consensus        24 l~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~iapry~~R~GGYTRI~K~~~~  103 (118)
T 1gd8_A           24 QAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAER  103 (118)
T ss_dssp             HHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTSSCCSCCEEEEEEEEE
T ss_pred             HHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeEEEEECCCC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             CCCCCCCeeEEEeec
Q 032454           80 RVGDAAPMAYIEFVD   94 (140)
Q Consensus        80 R~GD~A~maiIELVd   94 (140)
                      |.||+||||||||||
T Consensus       104 R~GD~A~maiiELVd  118 (118)
T 1gd8_A          104 RRGDGAPLALVELVE  118 (118)
T ss_dssp             CTTTCCEEEEEEECC
T ss_pred             CCCCCCCeEEEEecC
Confidence            999999999999997

>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O

Probab=100.00  E-value=7.6e-48  Score=286.65  Aligned_cols=93  Identities=40%  Similarity=0.662  Sum_probs=91.3

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      |+||||+||+|+||++||||+|+|||+|||+||+|++|++|+|.+||.|+++|+|||++|+|||++|+||||||+|+++|
T Consensus        24 l~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~iapry~~R~GGYTRI~K~~~R  103 (116)
T 2zjr_K           24 QATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTR  103 (116)
T ss_dssp             HHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTTTSCSCCCEEEECCCC
T ss_pred             HHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeeEEEECCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEee
Q 032454           81 VGDAAPMAYIEFV   93 (140)
Q Consensus        81 ~GD~A~maiIELV   93 (140)
                      .||+|||||||||
T Consensus       104 ~GD~A~maiiElV  116 (116)
T 2zjr_K          104 RGDGVTMALIELV  116 (116)
T ss_dssp             TTTCCCEEEEEC-
T ss_pred             CCCCCceEEEEeC
Confidence            9999999999997

>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2

Probab=100.00  E-value=3.1e-45  Score=293.35  Aligned_cols=93  Identities=48%  Similarity=0.846  Sum_probs=92.1

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      |+|+||+||||+||++||||+|+|||+|||+||+|++|++|+|.+||+|+++|+|||++|+|||++|+||||||+|+++|
T Consensus       113 LvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eiaPRY~dR~GGYTRIlKlg~R  192 (205)
T 3bbo_P          113 LTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPR  192 (205)
T ss_dssp             HHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSGGGGSSCCSCCEECCBCSCC
T ss_pred             HHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCeeEEEECCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEee
Q 032454           81 VGDAAPMAYIEFV   93 (140)
Q Consensus        81 ~GD~A~maiIELV   93 (140)
                      .||+|||||||||
T Consensus       193 ~GD~ApMAiIELV  205 (205)
T 3bbo_P          193 RGDNAPMAYIELV  205 (205)
T ss_dssp             SSSCCCCEEEEEC
T ss_pred             CCCCcceEEEEeC
Confidence            9999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d2qamn1	120	d.188.1.1 (N:1-120) Prokaryotic ribosomal protein	8e-34
d2cqma1	109	d.188.1.1 (A:28-136) Prokaryotic ribosomal protein	2e-32
d1gd8a_	105	d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {	4e-31
d2zjrk1	113	d.188.1.1 (K:3-115) Prokaryotic ribosomal protein	4e-30

>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (282), Expect = 8e-34
 Identities = 48/96 (50%), Positives = 64/96 (66%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
           M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL
Sbjct: 24  MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNEL 83

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 96
             R+  RAGGYTR+L+   R GD APMAYIE VDR 
Sbjct: 84  GPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119

>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (272), Expect = 2e-32
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 8/111 (7%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIHKLFT 58
           +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++   D+I KLF 
Sbjct: 5   LLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQ 64

Query: 59  ELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQP 109
            LA RYKD+ GGYTR+L+   R  D A MA IE+           P +P P
Sbjct: 65  VLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNC------LPPLPLP 109

>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]} Length = 105

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Thermus thermophilus [TaxId: 274]

 Score =  105 bits (263), Expect = 4e-31
 Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
               L+ H RI TTV KAKE+R   D+++ L K G L A R     ++   ++ KLF E+
Sbjct: 11  QAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEI 70

Query: 61  AYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIEFVD 94
           A RY+DR GGYTR+L+ +  R GD AP+A +E V+
Sbjct: 71  APRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 105

>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  102 bits (257), Expect = 4e-30
 Identities = 36/91 (39%), Positives = 53/91 (58%)

Query: 1   MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTEL 60
             + L++  RI+TT+ KAKE+R   + ++   K G L + R  A  +   DV+ K+  E+
Sbjct: 22  QATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEV 81

Query: 61  AYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 91
           A +Y +R GGYTR+LR   R GD   MA IE
Sbjct: 82  APKYAERPGGYTRILRVGTRRGDGVTMALIE 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d2cqma1	109	Prokaryotic ribosomal protein L17 {Human (Homo sap	100.0
d1gd8a_	105	Prokaryotic ribosomal protein L17 {Thermus thermop	100.0
d2qamn1	120	Prokaryotic ribosomal protein L17 {Escherichia col	100.0
d2zjrk1	113	Prokaryotic ribosomal protein L17 {Deinococcus rad	100.0

>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-47  Score=281.05  Aligned_cols=97  Identities=41%  Similarity=0.603  Sum_probs=94.1

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHH--HHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEccc
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSR   78 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~--r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~   78 (140)
                      |+|+||+||||+||++||||+|+|||+|||+||+|++|++  +++.+|+.|+++++|||++|+|||++|+||||||+|++
T Consensus         5 l~tsLi~herI~TT~~KAKelr~~~ErLIt~aK~~~~~~r~~~~~~~~l~~k~~v~KLf~~lapry~~R~GGYTRI~kl~   84 (109)
T d2cqma1           5 LLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTRMLQIP   84 (109)
T ss_dssp             HHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHHSCSCCEEEEEEC
T ss_pred             HHHHHHHcCeEEecHHHHHHHHHhHHHHHHHhhcCchhHHHHHHhhhhcccHHHHHHHHHHHhHHHhcCCCCeEEEEecC
Confidence            6899999999999999999999999999999999999986  88889999999999999999999999999999999999


Q ss_pred             CCCCCCCCeeEEEeecCch
Q 032454           79 IRVGDAAPMAYIEFVDREN   97 (140)
Q Consensus        79 ~R~GD~A~maiIELVd~~~   97 (140)
                      +|.||+|+||||||||+|.
T Consensus        85 ~R~gD~A~ma~iElv~~p~  103 (109)
T d2cqma1          85 NRSLDRAKMAVIEYKGNCL  103 (109)
T ss_dssp             CCSSSCCCEEEEEESSCCC
T ss_pred             CCCCCCCCeEEEEECCCCC
Confidence            9999999999999999974

>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6e-47  Score=275.72  Aligned_cols=94  Identities=45%  Similarity=0.721  Sum_probs=92.3

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccC-
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRI-   79 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~-   79 (140)
                      |+++||+||||+||++||||+|+|||+|||+||+|++|++|++.++|.|+++++|||++|+|||++|+||||||+|+++ 
T Consensus        11 l~t~Li~~erI~TT~~KAKelr~~~EklIt~aK~~~~~~rr~~~~~l~~~~~v~KLf~~lapry~~R~GGYTRI~kl~~~   90 (105)
T d1gd8a_          11 QAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYRDRQGGYTRVLKLAER   90 (105)
T ss_dssp             HHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTSSCCSCCEEEEEEEEE
T ss_pred             HHHHHHHcCEEEEcHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCCCeEEEEecCCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999975 


Q ss_pred             CCCCCCCeeEEEeec
Q 032454           80 RVGDAAPMAYIEFVD   94 (140)
Q Consensus        80 R~GD~A~maiIELVd   94 (140)
                      |.||+||||||||||
T Consensus        91 R~GD~A~ma~iElVd  105 (105)
T d1gd8a_          91 RRGDGAPLALVELVE  105 (105)
T ss_dssp             CTTTCCEEEEEEECC
T ss_pred             CCCCCCCEEEEEeeC
Confidence            999999999999997

>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-47  Score=282.34  Aligned_cols=96  Identities=50%  Similarity=0.810  Sum_probs=94.8

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      |+|+||+||+|+||++||||+|+|||+|||+||+|++|++|++.+||.|+++|+|||++|+|||++|+||||||+|+|+|
T Consensus        24 l~t~Li~herI~TT~aKAKelr~~~EklIt~aK~~~~~~rr~~~~~l~d~~~v~kLf~~iapry~~R~GGYTRI~klg~R  103 (120)
T d2qamn1          24 MAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFR  103 (120)
T ss_dssp             HHHHHHHHSEECCBSHHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSSCCTTHHHHTTTTHHHHTTTCCSCCEECCCCCCC
T ss_pred             HHHHHHHcCCeEecHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccCHHHHHHHHHHHHhHhcCCCCCeeeeeecCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEeecCc
Q 032454           81 VGDAAPMAYIEFVDRE   96 (140)
Q Consensus        81 ~GD~A~maiIELVd~~   96 (140)
                      .||+||||||||||++
T Consensus       104 ~GD~A~maiiElVd~~  119 (120)
T d2qamn1         104 AGDNAPMAYIELVDRS  119 (120)
T ss_dssp             SSSCCCBCCEEETTCC
T ss_pred             CCCCCCEEEEEEecCC
Confidence            9999999999999986

>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Prokaryotic ribosomal protein L17
superfamily: Prokaryotic ribosomal protein L17
family: Prokaryotic ribosomal protein L17
domain: Prokaryotic ribosomal protein L17
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=9.7e-46  Score=272.30  Aligned_cols=92  Identities=39%  Similarity=0.657  Sum_probs=91.1

Q ss_pred             ChhhhhhcCceEeCHHHHHHHHHhHHHHHHhhcCCCHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCCCCeEEEEcccCC
Q 032454            1 MVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIR   80 (140)
Q Consensus         1 LvtsLi~herI~TT~~KAKelr~~aErLIt~AK~g~~~~~r~a~~~L~~~~~v~KLf~~lapRy~~R~GGYTRI~kl~~R   80 (140)
                      |+++||+||||+||++||||+|+|||+|||+||+|++|++|++.+||.|+++|+|||++|+|||++|+||||||+|+++|
T Consensus        22 l~~sLi~herI~TT~~KAKelr~~~EklIT~AK~~~~~~rr~~~~~l~~k~~v~kLf~~iapry~~R~GGYTRI~kl~~R  101 (113)
T d2zjrk1          22 QATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTR  101 (113)
T ss_dssp             HHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTTTSCSCCCEEEECCCC
T ss_pred             HHHHHHHCCEEEECHHHHHHHHHHHHHHheecccCChhhhhhhhhhcccHHHHHHHHHHHhHHhcCCCCCeEEEEECCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeeEEEe
Q 032454           81 VGDAAPMAYIEF   92 (140)
Q Consensus        81 ~GD~A~maiIEL   92 (140)
                      .||+||||||||
T Consensus       102 ~gD~A~ma~iEL  113 (113)
T d2zjrk1         102 RGDGVTMALIEL  113 (113)
T ss_dssp             TTTCCCEEEEEC
T ss_pred             CCCCCceEEEeC
Confidence            999999999997