Citrus Sinensis ID: 032492

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPFPIVFEH
Secondary Structure (PSIPRED)
ccEEEEEEEEEEccEEEEEccccccccccEEEEEEEEccccccccEEEEEEcEEEEccccccEEEEEEEEcccccEEEEEEEccccccccHHHccccccccEEEEEEcccEEEEEEEcccEEEEEEEcccEEEcEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccccccccccccccccEEEEEEEEcccccccccEEEEccccEccccccccEEEEEEEcccccccEEEEEcccccccccccccccccEEEEEEEEcccEEEEEcccccEEEEEEccccccccEEccc
Coil and Loop (DISEMBL)
MVNCMLMISADLenltnlqpqggcddpnfsYFFKlkcgcgelsqkETCVSLAEtlptqggkgttnLIQKCKfcgregtvtmipgrgkpltqeaaqsggfsplmlfdcrgyepvdfVFGVGWKVesvsfyscpfpivfeh
Flexible Loop (DISEMBL)
MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETlptqggkgttnliqKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCpfpivfeh
Low Complexity Region (SEG)
MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPFPIVFEH
Disordered region (IsUnstruct)
***CMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGR***********GGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPFPIVF**
Disordered Region (DISOPRED)
MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAET*******GTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPF*IVFE*
Disordered Region (DISEMBL)
MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPFPIVFEH
Disordered Region (DISPRO)
MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPFPIVF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPFPIVFEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q3B8G0	160	UPF0587 protein C1orf123	N/A	no	0.848	0.737	0.384	4e-21
Q9NWV4	160	UPF0587 protein C1orf123	yes	no	0.863	0.75	0.377	4e-20
A7SJ66	159	UPF0587 protein v1g245604	N/A	no	0.920	0.805	0.367	1e-19
Q498R7	160	UPF0587 protein C1orf123	yes	no	0.863	0.75	0.370	3e-19
Q32P66	160	UPF0587 protein C1orf123	yes	no	0.827	0.718	0.377	4e-19
Q8BHG2	160	UPF0587 protein C1orf123	yes	no	0.863	0.75	0.362	7e-19
A1Z9A2	163	UPF0587 protein CG4646 OS	yes	no	0.863	0.736	0.382	1e-17
Q290L7	163	UPF0587 protein GA18326 O	yes	no	0.834	0.711	0.388	6e-16
Q9BI88	167	UPF0587 protein F46B6.12	yes	no	0.841	0.700	0.365	4e-14
O74797	157	UPF0587 protein C2D10.03c	yes	no	0.741	0.656	0.339	5e-08

>sp|Q3B8G0|CA123_XENLA UPF0587 protein C1orf123 homolog OS=Xenopus laevis PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 7/125 (5%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MV   L   A LENLT L+P G     +F +F KLKCG CGE+S K   ++L +++P +G
Sbjct: 1   MVKFALQFKASLENLTQLRPHG----EDFRWFLKLKCGNCGEVSDKWQYITLMDSVPLKG 56

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           G+G+ +++Q+CK C RE ++ ++     P   E +++  F  ++ F+CRG EP+DF    
Sbjct: 57  GRGSASMVQRCKLCSRENSIDILAASLHPYNAEDSET--FKTIVEFECRGLEPIDFQPQA 114

Query: 120 GWKVE 124
           G+  E
Sbjct: 115 GFAAE 119

Xenopus laevis (taxid: 8355)

>sp|Q9NWV4|CA123_HUMAN UPF0587 protein C1orf123 OS=Homo sapiens GN=C1orf123 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 7/127 (5%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           M    L + A LEN+TNL+P G     +F ++ K+KCG CGE+S K   + L +++  +G
Sbjct: 1   MGKIALQLKATLENITNLRPVG----EDFRWYLKMKCGNCGEISDKWQYIRLMDSVALKG 56

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           G+G+ +++QKCK C RE ++ ++    KP   E  ++  F  ++ F+CRG EPVDF    
Sbjct: 57  GRGSASMVQKCKLCARENSIEILSSTIKPYNAEDNEN--FKTIVEFECRGLEPVDFQPQA 114

Query: 120 GWKVESV 126
           G+  E V
Sbjct: 115 GFAAEGV 121

Homo sapiens (taxid: 9606)

>sp|A7SJ66|U587_NEMVE UPF0587 protein v1g245604 OS=Nematostella vectensis GN=v1g245604 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 8/136 (5%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQG 59
           MV   L + A+LEN+TNL+ +G     +F ++  LKC  CGE++++   + L E+ P +G
Sbjct: 1   MVRIGLQLKANLENVTNLKAEG----EDFRWYLMLKCMNCGEVTKQWVYMCLMESQPVKG 56

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           G+G  + + KCK C RE +V ++     P    A+ +G F  ++ FDCRG EP DF    
Sbjct: 57  GRGYAHFVSKCKLCHRENSVDIMKDSIHPYL--ASHNGKFHTIVSFDCRGVEPTDFSPRT 114

Query: 120 GWKVESVSFYSCPFPI 135
           GW  E  +  S PF +
Sbjct: 115 GWTAEGEN-TSTPFEV 129

Nematostella vectensis (taxid: 45351)

>sp|Q498R7|CA123_RAT UPF0587 protein C1orf123 homolog OS=Rattus norvegicus PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 7/127 (5%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           M    L + A LEN+TNL+P G     +F ++ K+KCG CGE+S+K   + L +++  +G
Sbjct: 1   MGKIALQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKG 56

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           G+G+ +++QKCK C RE ++ ++    K    E  +   F  ++ F+CRG EPVDF    
Sbjct: 57  GRGSASMVQKCKLCARENSIEILSSTIKSYNAEDNEK--FKTIVEFECRGLEPVDFQPQA 114

Query: 120 GWKVESV 126
           G+  E V
Sbjct: 115 GFAAEGV 121

Rattus norvegicus (taxid: 10116)

>sp|Q32P66|CA123_BOVIN UPF0587 protein C1orf123 homolog OS=Bos taurus PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 74/122 (60%), Gaps = 7/122 (5%)

Query: 6   LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTT 64
           L + A LEN+TNL+P G     +F ++ K+KCG CGE+S+K   + L +++  +GG+G+ 
Sbjct: 6   LQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKGGRGSA 61

Query: 65  NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
           +++QKCK C RE ++ ++    K    E  +   F  ++ F+CRG EPVDF    G+  E
Sbjct: 62  SMVQKCKLCSRENSIEILSSTIKSYNAEDNEK--FKTIVEFECRGLEPVDFQPQAGFAAE 119

Query: 125 SV 126
            V
Sbjct: 120 GV 121

Bos taurus (taxid: 9913)

>sp|Q8BHG2|CA123_MOUSE UPF0587 protein C1orf123 homolog OS=Mus musculus PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 7/127 (5%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           M    L + A LEN+TNL+P G     +F ++ K+KCG CGE+S+K   + L +++  +G
Sbjct: 1   MGKIALQLKATLENVTNLRPVG----EDFRWYLKMKCGNCGEISEKWQYIRLMDSVALKG 56

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           G+G+ +++QKCK C RE ++ ++    K    E  +   F  ++ F+CRG EPVDF    
Sbjct: 57  GRGSASMVQKCKLCARENSIDILSSTIKAYNAEDNEK--FKTIVEFECRGLEPVDFQPQA 114

Query: 120 GWKVESV 126
           G+  + V
Sbjct: 115 GFAADGV 121

Mus musculus (taxid: 10090)

>sp|A1Z9A2|U587_DROME UPF0587 protein CG4646 OS=Drosophila melanogaster GN=CG4646 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 8/128 (6%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQG 59
           MV   L ISA LEN+  L+       P++S+F KLKC  CGE S K   ++ +E +    
Sbjct: 1   MVRVGLQISATLENVDKLETSH----PDYSFFLKLKCSNCGEQSDKWHDITESERVQQDS 56

Query: 60  GKGTT-NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFG 118
                 N   KCK C RE ++ ++     P T  A  SG F  +++F+CRG EPV+F   
Sbjct: 57  RNAAGFNFFMKCKMCSRENSIDIVDKSNAPYT--ADDSGAFKTIVVFECRGAEPVEFSPR 114

Query: 119 VGWKVESV 126
           VGW+V S 
Sbjct: 115 VGWRVSSA 122

Drosophila melanogaster (taxid: 7227)

>sp|Q290L7|U587_DROPS UPF0587 protein GA18326 OS=Drosophila pseudoobscura pseudoobscura GN=GA18326 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 10/126 (7%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQG 59
           MV   L ISA LEN+  L+       P++ +F KL C  CGE S K   ++ +E +  Q 
Sbjct: 1   MVRVGLQISATLENIDKLETSH----PDYPFFVKLTCSNCGEQSDKWHDITESERVQ-QD 55

Query: 60  GKGTT--NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVF 117
            + T   N   KCK C RE ++ ++     P T  A  SG    +++FDCRG EPVDF  
Sbjct: 56  TRNTAGFNFFMKCKMCSRENSIDIVEKSNVPYT--ADDSGKLKTIVIFDCRGLEPVDFSP 113

Query: 118 GVGWKV 123
             GWKV
Sbjct: 114 RSGWKV 119

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9BI88|U587_CAEEL UPF0587 protein F46B6.12 OS=Caenorhabditis elegans GN=F46B6.12 PE=3 SV=2

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

Query: 6   LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTT 64
           L +   L+ +T+L+P    D  +F +  KLKC  CGE       V L E L   G +G  
Sbjct: 6   LELKCQLKGITDLRPD---DTDSFHWHMKLKCTNCGEAPDHWQYVVLNEMLDVPGSRGEA 62

Query: 65  NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
           NL++KCK CGR  T+T++    K    E  Q+  +  + +FDCRG EP DF     W  +
Sbjct: 63  NLVEKCKLCGRVNTLTIVEDMFKSYNIE--QNEKWQQIAVFDCRGLEPFDFDPRDEWIAK 120

Query: 125 SVS 127
           SV 
Sbjct: 121 SVE 123

Caenorhabditis elegans (taxid: 6239)

>sp|O74797|YGN3_SCHPO UPF0587 protein C2D10.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2D10.03c PE=3 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 6   LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTT 64
           L ++A+L  + NL P+   D+ +F Y FK++C GC E+      +S +ET    G KG  
Sbjct: 6   LNLNAELTGVKNLAPK---DEESFYYAFKVQCSGCREIHDNAIEISRSETHSIPGSKGEA 62

Query: 65  NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFV 116
           NLI  CK C R+    +I G   P       S     +++ +CRG E V+F+
Sbjct: 63  NLIWTCKNC-RKTCSFVIEGPFSPYN----DSQETKKVLVLECRGCELVEFI 109

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
351722162	166	uncharacterized protein LOC100500192 [Gl	0.913	0.765	0.820	4e-54
449450332	166	PREDICTED: UPF0587 protein C1orf123 homo	0.913	0.765	0.781	2e-53
388496768	166	unknown [Lotus japonicus] gi|388514125|g	0.906	0.759	0.795	2e-52
217072436	166	unknown [Medicago truncatula] gi|3885061	0.906	0.759	0.787	2e-52
351727238	166	uncharacterized protein LOC100527737 [Gl	0.913	0.765	0.789	3e-52
225429434	166	PREDICTED: UPF0587 protein C1orf123 homo	0.913	0.765	0.710	1e-48
284520996	166	conserved hypothetical protein [Jatropha	0.913	0.765	0.703	3e-48
224092234	166	predicted protein [Populus trichocarpa]	0.913	0.765	0.687	1e-46
255550860	166	conserved hypothetical protein [Ricinus	0.913	0.765	0.656	4e-45
312282667	167	unnamed protein product [Thellungiella h	0.913	0.760	0.679	5e-44

>gi|351722162|ref|NP_001238258.1| uncharacterized protein LOC100500192 [Glycine max] gi|255629629|gb|ACU15162.1| unknown [Glycine max]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 115/128 (89%), Gaps = 1/128 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN MLMISADLENLTNLQPQGGCDDPNFSY FKLKCG CGELSQKETCV L +T+P   
Sbjct: 1   MVNFMLMISADLENLTNLQPQGGCDDPNFSYLFKLKCGRCGELSQKETCVVLNDTVPLPV 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           GKGTT+LIQKCKFCGR+GTVTMI G+GKPLTQE ++SG ++PLMLFDCRGYEPVDFVFG 
Sbjct: 61  GKGTTHLIQKCKFCGRDGTVTMIEGKGKPLTQEISESGKYAPLMLFDCRGYEPVDFVFGD 120

Query: 120 GWKVESVS 127
           GWKVES+ 
Sbjct: 121 GWKVESLE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450332|ref|XP_004142917.1| PREDICTED: UPF0587 protein C1orf123 homolog isoform 2 [Cucumis sativus]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/128 (78%), Positives = 114/128 (89%), Gaps = 1/128 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN +L I A+LENLTNLQPQ GCDDPNF Y FK+KCG CGE+SQKETCV+L ET+P Q 
Sbjct: 1   MVNFLLKIKAELENLTNLQPQDGCDDPNFPYLFKVKCGRCGEVSQKETCVTLGETIPLQA 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           GKGTTNL+QKCKFCGREGT+TMIPGRGKPLTQE ++SGGFSPLMLFDCRGY+P+ F+FG 
Sbjct: 61  GKGTTNLVQKCKFCGREGTITMIPGRGKPLTQEISESGGFSPLMLFDCRGYDPMGFIFGP 120

Query: 120 GWKVESVS 127
           GWKVES+ 
Sbjct: 121 GWKVESIE 128

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496768|gb|AFK36450.1| unknown [Lotus japonicus] gi|388514125|gb|AFK45124.1| unknown [Lotus japonicus]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/127 (79%), Positives = 113/127 (88%), Gaps = 1/127 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN MLMISA+LENLTNLQPQGGCDDPNFSY FK+KCG CGELSQ+ETCV L +T+P   
Sbjct: 1   MVNYMLMISAELENLTNLQPQGGCDDPNFSYLFKVKCGRCGELSQRETCVVLNDTVPLPV 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           GKG+T+LIQKCKFCGREGTVTM+ GRGKPLT E ++SG +SPLMLFDCRGYEPVDFVF  
Sbjct: 61  GKGSTHLIQKCKFCGREGTVTMVVGRGKPLTHETSESGKYSPLMLFDCRGYEPVDFVFTG 120

Query: 120 GWKVESV 126
           GWKVES+
Sbjct: 121 GWKVESL 127

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072436|gb|ACJ84578.1| unknown [Medicago truncatula] gi|388506156|gb|AFK41144.1| unknown [Medicago truncatula]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 111/127 (87%), Gaps = 1/127 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN MLMISA+LENLTNLQPQGG DDPNF YFFKLKCG CGE+SQKETCVSL +T+P   
Sbjct: 1   MVNFMLMISAELENLTNLQPQGGVDDPNFPYFFKLKCGRCGEVSQKETCVSLNDTVPLPA 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           G+GTT+L+QKCKFC    TVTMIPG+GKPLTQE  +SG FSPLMLFDCRGYEP+DFVFG 
Sbjct: 61  GRGTTHLVQKCKFCASVSTVTMIPGKGKPLTQETTESGKFSPLMLFDCRGYEPIDFVFGT 120

Query: 120 GWKVESV 126
           GWKVES+
Sbjct: 121 GWKVESL 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727238|ref|NP_001236642.1| uncharacterized protein LOC100527737 [Glycine max] gi|255633082|gb|ACU16896.1| unknown [Glycine max]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/128 (78%), Positives = 113/128 (88%), Gaps = 1/128 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN MLMI+A+LENLTNLQPQ GCDDPNFSY FKLKCG CGELSQKETCV L +T+P   
Sbjct: 1   MVNFMLMITAELENLTNLQPQDGCDDPNFSYLFKLKCGRCGELSQKETCVVLNDTVPLPV 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           GK TT+LIQKCKFCGR+GTVTMI G+GKPLTQE ++SG ++PLMLFDCRGYEPVDFVFG 
Sbjct: 61  GKSTTHLIQKCKFCGRDGTVTMIEGKGKPLTQEISESGKYAPLMLFDCRGYEPVDFVFGD 120

Query: 120 GWKVESVS 127
           GWKVES+ 
Sbjct: 121 GWKVESLE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429434|ref|XP_002276450.1| PREDICTED: UPF0587 protein C1orf123 homolog [Vitis vinifera] gi|296081606|emb|CBI20611.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/128 (71%), Positives = 110/128 (85%), Gaps = 1/128 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN MLMI+ +LENLTNLQPQGGCDDP+F+Y+FK+KCG CGE+SQKETCV+L ET+P   
Sbjct: 1   MVNYMLMITGELENLTNLQPQGGCDDPDFTYYFKVKCGNCGEVSQKETCVTLNETVPLPK 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
            KGTT+L+QKCKFC REGT+ MIPGRG+PLTQE ++SG F+PLML D RG+EPV+F FG 
Sbjct: 61  SKGTTHLVQKCKFCDREGTILMIPGRGRPLTQEMSESGKFTPLMLLDSRGFEPVEFSFGT 120

Query: 120 GWKVESVS 127
           GWK ES+ 
Sbjct: 121 GWKAESME 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284520996|gb|ADB93073.1| conserved hypothetical protein [Jatropha curcas]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/128 (70%), Positives = 109/128 (85%), Gaps = 1/128 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN MLMI+ADLEN+ +LQPQGGCDDP+FSY FKLKCG CGE+SQKETCVSL +T+P   
Sbjct: 1   MVNYMLMITADLENIASLQPQGGCDDPSFSYLFKLKCGRCGEVSQKETCVSLNDTVPLPT 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           G+GT NL+QKCKFCGR+GT+ M+PG+GKPLT E ++ G ++PLM+FDCRGYEP  FVFG 
Sbjct: 61  GRGTANLVQKCKFCGRDGTILMVPGKGKPLTPEISEKGEYAPLMMFDCRGYEPEGFVFGD 120

Query: 120 GWKVESVS 127
           GWK ES +
Sbjct: 121 GWKAESTA 128

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092234|ref|XP_002309521.1| predicted protein [Populus trichocarpa] gi|222855497|gb|EEE93044.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 108/128 (84%), Gaps = 1/128 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN MLMI+AD +N+ +LQPQGGCDDP+FSYFFK+KCG CGE+SQKETCV+L +T+P   
Sbjct: 1   MVNHMLMITADFDNIASLQPQGGCDDPDFSYFFKIKCGRCGEVSQKETCVTLNDTVPLLQ 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           GKGT +L+QKCKFCGR+GTVTMIPG+GKPLTQE ++ G ++PLMLFD RGYEP  FVF  
Sbjct: 61  GKGTAHLVQKCKFCGRDGTVTMIPGKGKPLTQELSEGGKYAPLMLFDFRGYEPEGFVFSG 120

Query: 120 GWKVESVS 127
            W  ES++
Sbjct: 121 AWTAESIA 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550860|ref|XP_002516478.1| conserved hypothetical protein [Ricinus communis] gi|223544298|gb|EEF45819.1| conserved hypothetical protein [Ricinus communis]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 105/128 (82%), Gaps = 1/128 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MVN +LMI+ADLEN+ NLQPQGGCDDP+F+Y FK+KCG CGE+SQKETCVSL E +P   
Sbjct: 1   MVNYVLMITADLENINNLQPQGGCDDPSFTYLFKVKCGRCGEMSQKETCVSLNEIVPVPA 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
            +GT NL+QKCKFCGR+GTV M+PG+GKPLT E ++ G ++P+M+FDCRGYE   FVF  
Sbjct: 61  SRGTANLVQKCKFCGRDGTVVMVPGKGKPLTVEMSEKGEYAPVMMFDCRGYELEGFVFDG 120

Query: 120 GWKVESVS 127
            WK ES++
Sbjct: 121 EWKAESIA 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282667|dbj|BAJ34199.1| unnamed protein product [Thellungiella halophila]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 104/128 (81%), Gaps = 1/128 (0%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQG 59
           MVN +L I+ADLENLTNLQP GGCDD NF Y FKLKC  CGE++QKETCV+L ET    G
Sbjct: 1   MVNYVLKITADLENLTNLQPSGGCDDSNFPYLFKLKCERCGEVTQKETCVTLNETFTPPG 60

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           G+GT +L+QKCKFCGREG VTMIPG+G+PLT E +++G  +PLM+FDCRGYEP+DF FG 
Sbjct: 61  GRGTCHLVQKCKFCGREGNVTMIPGKGRPLTLEDSEAGVHAPLMMFDCRGYEPIDFGFGG 120

Query: 120 GWKVESVS 127
            WK E+ S
Sbjct: 121 FWKAEAES 128

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
UNIPROTKB|Q9NWV4	160	C1orf123 "UPF0587 protein C1or	0.827	0.718	0.393	2.7e-20
RGD|1559786	160	RGD1559786 "similar to RIKEN c	0.827	0.718	0.385	1.9e-19
MGI|MGI:1921348	160	0610037L13Rik "RIKEN cDNA 0610	0.827	0.718	0.377	4e-19
FB|FBgn0033810	163	CG4646 [Drosophila melanogaste	0.856	0.730	0.385	2e-17
UNIPROTKB|Q290L7	163	GA18326 "UPF0587 protein GA183	0.848	0.723	0.390	4.7e-16
UNIPROTKB|G4ML68	160	MGG_06705 "Uncharacterized pro	0.841	0.731	0.344	2.4e-12
POMBASE|SPBC2D10.03c	157	SPBC2D10.03c "DUF866 domain pr	0.741	0.656	0.339	6.6e-10
SGD|S000000686	182	YCR090C "Putative protein of u	0.625	0.478	0.277	2.9e-09
ASPGD|ASPL0000066445	161	AN10965 [Emericella nidulans (	0.892	0.770	0.271	1.6e-08
CGD|CAL0003971	166	orf19.1394 [Candida albicans (	0.827	0.692	0.245	4.2e-08

UNIPROTKB|Q9NWV4 C1orf123 "UPF0587 protein C1orf123" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 48/122 (39%), Positives = 76/122 (62%)

Query:     6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTT 64
             L + A LEN+TNL+P G  +D  F ++ K+KCG CGE+S K   + L +++  +GG+G+ 
Sbjct:     6 LQLKATLENITNLRPVG--ED--FRWYLKMKCGNCGEISDKWQYIRLMDSVALKGGRGSA 61

Query:    65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
             +++QKCK C RE ++ ++    KP   E  ++  F  ++ F+CRG EPVDF    G+  E
Sbjct:    62 SMVQKCKLCARENSIEILSSTIKPYNAEDNEN--FKTIVEFECRGLEPVDFQPQAGFAAE 119

Query:   125 SV 126
              V
Sbjct:   120 GV 121

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1559786 RGD1559786 "similar to RIKEN cDNA 0610037L13" [Rattus norvegicus (taxid:10116)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 47/122 (38%), Positives = 75/122 (61%)

Query:     6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTT 64
             L + A LEN+TNL+P G  +D  F ++ K+KCG CGE+S+K   + L +++  +GG+G+ 
Sbjct:     6 LQLKATLENVTNLRPVG--ED--FRWYLKMKCGNCGEISEKWQYIRLMDSVALKGGRGSA 61

Query:    65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
             +++QKCK C RE ++ ++    K    E  +   F  ++ F+CRG EPVDF    G+  E
Sbjct:    62 SMVQKCKLCARENSIEILSSTIKSYNAEDNEK--FKTIVEFECRGLEPVDFQPQAGFAAE 119

Query:   125 SV 126
              V
Sbjct:   120 GV 121

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1921348 0610037L13Rik "RIKEN cDNA 0610037L13 gene" [Mus musculus (taxid:10090)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 46/122 (37%), Positives = 75/122 (61%)

Query:     6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTT 64
             L + A LEN+TNL+P G  +D  F ++ K+KCG CGE+S+K   + L +++  +GG+G+ 
Sbjct:     6 LQLKATLENVTNLRPVG--ED--FRWYLKMKCGNCGEISEKWQYIRLMDSVALKGGRGSA 61

Query:    65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
             +++QKCK C RE ++ ++    K    E  +   F  ++ F+CRG EPVDF    G+  +
Sbjct:    62 SMVQKCKLCARENSIDILSSTIKAYNAEDNEK--FKTIVEFECRGLEPVDFQPQAGFAAD 119

Query:   125 SV 126
              V
Sbjct:   120 GV 121

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0033810 CG4646 [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 49/127 (38%), Positives = 68/127 (53%)

Query:     1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
             MV   L ISA LEN+  L+       P++S+F KLKC  CGE S K   ++ +E +    
Sbjct:     1 MVRVGLQISATLENVDKLETS----HPDYSFFLKLKCSNCGEQSDKWHDITESERVQQDS 56

Query:    60 GKGTT-NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFG 118
                   N   KCK C RE ++ ++     P T  A  SG F  +++F+CRG EPV+F   
Sbjct:    57 RNAAGFNFFMKCKMCSRENSIDIVDKSNAPYT--ADDSGAFKTIVVFECRGAEPVEFSPR 114

Query:   119 VGWKVES 125
             VGW+V S
Sbjct:   115 VGWRVSS 121

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q290L7 GA18326 "UPF0587 protein GA18326" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 50/128 (39%), Positives = 67/128 (52%)

Query:     1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
             MV   L ISA LEN+  L+       P++ +F KL C  CGE S K   ++ +E +  Q 
Sbjct:     1 MVRVGLQISATLENIDKLETS----HPDYPFFVKLTCSNCGEQSDKWHDITESERVQ-QD 55

Query:    60 GKGTT--NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVF 117
              + T   N   KCK C RE ++ ++     P T  A  SG    +++FDCRG EPVDF  
Sbjct:    56 TRNTAGFNFFMKCKMCSRENSIDIVEKSNVPYT--ADDSGKLKTIVIFDCRGLEPVDFSP 113

Query:   118 GVGWKVES 125
               GWKV S
Sbjct:   114 RSGWKVFS 121

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4ML68 MGG_06705 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 42/122 (34%), Positives = 60/122 (49%)

Query:     6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTT 64
             L ++A+L  +TNL+P      P F Y FK++C  C E       VS  ET    G +G  
Sbjct:     4 LTLTAELGGVTNLRPDDTEASP-FWYTFKVQCTSCRETHANWVGVSRFETNEMSGSRGEA 62

Query:    65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
             N + KCK C RE + ++   +  P   EA++      ++ FDCRG E V+F     W  E
Sbjct:    63 NFVWKCKNCKRESSASI---KAAPAAYEASEPAKGQKIIEFDCRGLEFVEFKPEGNWLAE 119

Query:   125 SV 126
              V
Sbjct:   120 GV 121

GO:0008150 "biological_process" evidence=ND

POMBASE|SPBC2D10.03c SPBC2D10.03c "DUF866 domain protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 38/112 (33%), Positives = 58/112 (51%)

Query:     6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTT 64
             L ++A+L  + NL P+   D+ +F Y FK++C GC E+      +S +ET    G KG  
Sbjct:     6 LNLNAELTGVKNLAPK---DEESFYYAFKVQCSGCREIHDNAIEISRSETHSIPGSKGEA 62

Query:    65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFV 116
             NLI  CK C R+    +I G   P       S     +++ +CRG E V+F+
Sbjct:    63 NLIWTCKNC-RKTCSFVIEGPFSPYND----SQETKKVLVLECRGCELVEFI 109

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

SGD|S000000686 YCR090C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 106 (42.4 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 25/90 (27%), Positives = 45/90 (50%)

Query:     6 LMISADL-ENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGT 63
             L++ A L EN+T +  +   ++    + F L+C  C EL   +  ++  E       KGT
Sbjct:     5 LVLKATLSENVTKVSIEN-TNESRAEFAFDLQCTSCRELHDSKVIINTFEEYAMPASKGT 63

Query:    64 TNLIQKCKFCGREGTVTMIPGRGKPLTQEA 93
              + + KCKFC +E +V +     + LT ++
Sbjct:    64 ASFLMKCKFCSKELSVNLCAFEDEYLTDQS 93

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

ASPGD|ASPL0000066445 AN10965 [Emericella nidulans (taxid:162425)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 35/129 (27%), Positives = 60/129 (46%)

Query:     6 LMISADLENLTNLQPQGGCDDPNFSYFFKLKC-GCGELSQKETCVSLAETLPTQGGKGTT 64
             L+++A+L  +T+L+PQ   + P + Y FK++C  C E        +  E     G +G  
Sbjct:     4 LILTAELTGVTDLRPQDTEEAPYY-YTFKVQCTSCRETHPNWVSFNRFEQHEIPGSRGEA 62

Query:    65 NLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVE 124
             N + KCK C R  + +++ G       +  + G    ++  +CRG E  +F     W+  
Sbjct:    63 NFVWKCKLCQRTHSASVLAGPNAYAAGDDKRKG--QKIIDLECRGLEFTEFKPDGEWEAV 120

Query:   125 SVSFYSCPF 133
              V   S PF
Sbjct:   121 GVES-STPF 128

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0003971 orf19.1394 [Candida albicans (taxid:5476)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 29/118 (24%), Positives = 58/118 (49%)

Query:     1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
             MV  +L  SA+L N+T L+P    + P + Y F+++C  C     K+  ++  E     G
Sbjct:     1 MVKFLLKASAELSNVTGLEPSDTPEHP-YEYTFQIECTKCRTTHDKDIQINQYEKHEISG 59

Query:    60 GKGTTNLIQKCKFCGREGTVTMIPGRGK-PLTQEAAQSGGFSPLMLFDCRGYEPVDFV 116
              +G  + + +CK C  E + +++    K   T+++      + ++  D RG + + F+
Sbjct:    60 SRGEASFVFRCKECKHEHSASILRTNEKLSTTEDSVNDKASATILEIDARGIDFLKFI 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam05907	161	pfam05907, DUF866, Eukaryotic protein of unknown f	4e-50

>gnl|CDD|191399 pfam05907, DUF866, Eukaryotic protein of unknown function (DUF866)

 Score =  156 bits (397), Expect = 4e-50
 Identities = 66/127 (51%), Positives = 81/127 (63%), Gaps = 7/127 (5%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           MV   L + A+LENLTNL P G     NF YFFKLKC  CGE+S K   ++L+ET+   G
Sbjct: 1   MVKFALQLKAELENLTNLFPSG----ENFPYFFKLKCSNCGEISDKWIYITLSETVELPG 56

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
           GKGT NL+QKCK C RE ++ +I G G P T E   SG F  +++FDCRG EPVDF    
Sbjct: 57  GKGTANLVQKCKLCSRENSIDIIDGSGSPYTAE--DSGKFKTIVVFDCRGLEPVDFSPRG 114

Query: 120 GWKVESV 126
           GW  E+ 
Sbjct: 115 GWIAEAA 121

This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PF05907	161	DUF866: Eukaryotic protein of unknown function (DU	100.0
KOG1296	161	consensus Uncharacterized conserved protein [Funct	100.0
PF04502	324	DUF572: Family of unknown function (DUF572) ; Inte	93.08
PRK00415	59	rps27e 30S ribosomal protein S27e; Reviewed	92.74
PLN00209	86	ribosomal protein S27; Provisional	92.49
PF01667	55	Ribosomal_S27e: Ribosomal protein S27; InterPro: I	91.79
PTZ00083	85	40S ribosomal protein S27; Provisional	91.72
COG2051	67	RPS27A Ribosomal protein S27E [Translation, riboso	90.3
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	84.59

>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues

Probab=100.00  E-value=1.2e-53  Score=327.38  Aligned_cols=126  Identities=48%  Similarity=0.914  Sum_probs=97.1

Q ss_pred             CceEEEEEEEEecceeeeeeCCCCCCCCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeEE
Q 032492            1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTV   79 (139)
Q Consensus         1 Mv~~~L~vkAeLenVt~l~p~~~~~~p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re~si   79 (139)
                      ||+|+|+|||+||||++|+|.+    ++|.|+|+|||+ |||+|+|+|+|+++|+++|+||||+||||+|||+|+|++||
T Consensus         1 M~~~~L~ikAeLeNVt~L~p~~----~~~~~~fkvkCt~CgE~~~k~V~i~~~e~~e~~gsrG~aNfv~KCk~C~re~si   76 (161)
T PF05907_consen    1 MVKFALQIKAELENVTNLQPVD----PDFEWFFKVKCTSCGEVHPKWVYINRFEKHEIPGSRGTANFVMKCKFCKRESSI   76 (161)
T ss_dssp             EEEEEEEEEEEEESEEEEE-------TT--EEEEEEETTSS--EEEEEEE-TT-BEE-TTSS-EESEEE--SSSS--EEE
T ss_pred             CcEEEEEEEEEEcCceEEEecC----CCCEEEEEEEECCCCCccCcceEeecceEEecCCCccceEeEecCcCcCCccEE
Confidence            9999999999999999999986    568999999999 99999999999999999999999999999999999999999


Q ss_pred             EEecCCCcccccccccCCCCccEEEEEccCceEEeEEeCCCEEEEEeecCceee
Q 032492           80 TMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPF  133 (139)
Q Consensus        80 ~i~~~~~~~~~~e~~~~~~~~~I~~fdCRGlEpv~f~P~~~w~~~s~~~~~~~~  133 (139)
                      +|++++..+|+++++  ++|++|++||||||||++|+|+++|+|++++|+ ..|
T Consensus        77 ~i~~~~~~~~~~e~~--~~~~~i~~fdCRG~e~~~f~p~~~~~~~~~esG-~~f  127 (161)
T PF05907_consen   77 DIIPGKGKPYTAEDS--GKFVPILAFDCRGLEPVEFSPRGGWVAVSVESG-TKF  127 (161)
T ss_dssp             EEE--TTTEEEGGGT--TS-EEEEEEEEESEEEEEE---S-EEEEET-TS--EE
T ss_pred             EEEecCccccccccc--cCCceEEEEECCCcEeEEEecCCcEEEEEecCC-CEE
Confidence            999999889998764  799999999999999999999999999999777 455

; PDB: 1ZSO_B.

>KOG1296 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.6e-52  Score=314.89  Aligned_cols=124  Identities=44%  Similarity=0.852  Sum_probs=120.4

Q ss_pred             CceEEEEEEEEecceeeeeeCCCCCCCCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeEE
Q 032492            1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTV   79 (139)
Q Consensus         1 Mv~~~L~vkAeLenVt~l~p~~~~~~p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re~si   79 (139)
                      ||+|+|+++|.|||||+|+|.+    |+|+|+|+|||+ |||.|++|++|+.+|.+.+|||||+||||||||+|+|++||
T Consensus         1 M~~~~l~i~a~lENvtkl~~~~----~~~rf~~kLkCtnCgE~~dkw~~I~l~E~~~~pg~Rgta~~v~KCK~C~Rensv   76 (161)
T KOG1296|consen    1 MVLFLLQIAATLENVTKLSPSG----PDFRFYLKLKCTNCGELSDKWQYITLNEEVAMPGSRGTASFVMKCKFCSRENSV   76 (161)
T ss_pred             CceeeeeeehhhhcccccccCC----CCceeEEEeccccccccCCceEEEEeeeeecCCCCcchhhHhhhhhhhcccCcE
Confidence            9999999999999999999987    789999999999 99999999999999999999999999999999999999999


Q ss_pred             EEecCCCcccccccccCCCCccEEEEEccCceEEeEEeCCCEEEEEeecCc
Q 032492           80 TMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYS  130 (139)
Q Consensus        80 ~i~~~~~~~~~~e~~~~~~~~~I~~fdCRGlEpv~f~P~~~w~~~s~~~~~  130 (139)
                      +|++.++++||++++  ++|++|+.|||||+||++|.|+++|.|+|++++.
T Consensus        77 ~iv~~~~~pyt~ed~--e~~~~i~vfdCRG~EpidF~p~~~w~a~s~esG~  125 (161)
T KOG1296|consen   77 TIVAFEDKPYTAEDS--EKFKTIVVFDCRGLEPIDFYPRTGWFAVSAESGT  125 (161)
T ss_pred             EEecCCCCccccccc--ccccceEEEeccCCcceeecCCceEEEEecccCc
Confidence            999999999999875  6899999999999999999999999999999983

>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family

Probab=93.08  E-value=0.12  Score=43.72  Aligned_cols=63  Identities=22%  Similarity=0.305  Sum_probs=45.8

Q ss_pred             ceEEEEEEec-CCceeeceEEEecCeeEEeCC--CCce--eeEEEeeccCCCeeEEEEecCCCccccccc
Q 032492           29 FSYFFKLKCG-CGELSQKETCVSLAETLPTQG--GKGT--TNLIQKCKFCGREGTVTMIPGRGKPLTQEA   93 (139)
Q Consensus        29 ~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~g--sRG~--aNfv~KCk~C~re~si~i~~~~~~~~~~e~   93 (139)
                      |...|.|.|. |++--.+.+-+|. ++..+.+  ==|.  =.|.|||..|+.+.+|.=.|. +.-|.++.
T Consensus        35 f~~Pf~i~C~~C~~~I~kG~rFNA-~Ke~v~~E~Yls~~I~rF~~kC~~C~~~i~~kTDPk-n~dY~~~~  102 (324)
T PF04502_consen   35 FMMPFNIWCNTCGEYIYKGVRFNA-RKEKVGNEKYLSTPIYRFYIKCPRCSNEIEFKTDPK-NTDYVVES  102 (324)
T ss_pred             EcCCccCcCCCCccccccceeeee-eeEecCCCccccceEEEEEEEcCCCCCEEeeecCCC-CCCeeeec
Confidence            4667999999 9999999999999 5655654  2243  379999999999866554443 34565543

>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed

Probab=92.74  E-value=0.15  Score=33.38  Aligned_cols=34  Identities=32%  Similarity=0.850  Sum_probs=26.7

Q ss_pred             CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      |+ .||++|||. |+.+.   +.+            +.|..+.+|..|++.
T Consensus         5 p~-S~F~~VkCp~C~n~q---~vF------------sha~t~V~C~~Cg~~   39 (59)
T PRK00415          5 PR-SRFLKVKCPDCGNEQ---VVF------------SHASTVVRCLVCGKT   39 (59)
T ss_pred             CC-CeEEEEECCCCCCeE---EEE------------ecCCcEEECcccCCC
Confidence            54 899999999 99874   222            346789999999986

>PLN00209 ribosomal protein S27; Provisional

Probab=92.49  E-value=0.24  Score=34.71  Aligned_cols=34  Identities=29%  Similarity=0.728  Sum_probs=26.9

Q ss_pred             CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      |+ .|+++|||. |+.+.   +.+            +.|..+.+|..|++.
T Consensus        30 Pn-S~Fm~VkCp~C~n~q---~VF------------ShA~t~V~C~~Cg~~   64 (86)
T PLN00209         30 PN-SFFMDVKCQGCFNIT---TVF------------SHSQTVVVCGSCQTV   64 (86)
T ss_pred             CC-CEEEEEECCCCCCee---EEE------------ecCceEEEccccCCE
Confidence            54 899999999 99875   222            456889999999976

>PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.79  E-value=0.16  Score=32.72  Aligned_cols=32  Identities=34%  Similarity=0.820  Sum_probs=19.2

Q ss_pred             eEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           30 SYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        30 ~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      .|+++|||. |+.+.   +.+            +.|..+.+|..|++.
T Consensus         3 S~Fm~VkCp~C~~~q---~vF------------Sha~t~V~C~~Cg~~   35 (55)
T PF01667_consen    3 SYFMDVKCPGCYNIQ---TVF------------SHAQTVVKCVVCGTV   35 (55)
T ss_dssp             --EEEEE-TTT-SEE---EEE------------TT-SS-EE-SSSTSE
T ss_pred             ccEEEEECCCCCCee---EEE------------ecCCeEEEcccCCCE
Confidence            699999999 99875   222            346788999999975

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families include mammalian, yeast, Chlamydomonas reinhardtii and Entamoeba histolytica S27, and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0250 []. These proteins have from 62 to 87 amino acids. They contain, in their central section, a putative zinc-finger region of the type C-x(2)-C-x(14)-C-x(2)-C.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1QXF_A 3IZ6_X 2XZN_6 2XZM_6 3U5G_b 3IZB_X 3U5C_b.

>PTZ00083 40S ribosomal protein S27; Provisional

Probab=91.72  E-value=0.33  Score=33.91  Aligned_cols=34  Identities=32%  Similarity=0.824  Sum_probs=26.7

Q ss_pred             CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      |+ .|+++|||. |+.+.   +.+            +.|..+.+|..|++.
T Consensus        29 Pn-S~Fm~VkCp~C~n~q---~VF------------ShA~t~V~C~~Cg~~   63 (85)
T PTZ00083         29 PN-SYFMDVKCPGCSQIT---TVF------------SHAQTVVLCGGCSSQ   63 (85)
T ss_pred             CC-CeEEEEECCCCCCee---EEE------------ecCceEEEccccCCE
Confidence            54 899999999 99875   222            346789999999875

>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]

Probab=90.30  E-value=0.54  Score=31.48  Aligned_cols=42  Identities=26%  Similarity=0.620  Sum_probs=30.1

Q ss_pred             eeeeeeCCCCCCCCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           15 LTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        15 Vt~l~p~~~~~~p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      +.-+.|..    | ..++++|||. |+.+.   +.+            +.|..+.+|-.|++.
T Consensus         5 ~k~~~p~~----p-~s~Fl~VkCpdC~N~q---~vF------------shast~V~C~~CG~~   47 (67)
T COG2051           5 RKVKIPKE----P-RSRFLRVKCPDCGNEQ---VVF------------SHASTVVTCLICGTT   47 (67)
T ss_pred             ceeeecCC----C-CceEEEEECCCCCCEE---EEe------------ccCceEEEecccccE
Confidence            34455532    5 3899999999 99874   222            446788999999985

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=84.59  E-value=1.1  Score=28.90  Aligned_cols=41  Identities=20%  Similarity=0.430  Sum_probs=29.8

Q ss_pred             EEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeEEEEecCC
Q 032492           35 LKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTVTMIPGR   85 (139)
Q Consensus        35 vkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re~si~i~~~~   85 (139)
                      +.|. ||..++-.  |-. |+ .+      -||-+-|+-|++|.-|++....
T Consensus         5 i~CP~CgnKTR~k--ir~-DT-~L------kNfPlyCpKCK~EtlI~v~~~~   46 (55)
T PF14205_consen    5 ILCPICGNKTRLK--IRE-DT-VL------KNFPLYCPKCKQETLIDVKQLK   46 (55)
T ss_pred             EECCCCCCcccee--eec-Cc-ee------ccccccCCCCCceEEEEeeccE
Confidence            5699 99877533  222 22 12      3999999999999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
1zso_A	164	Hypothetical Protein From Plasmodium Falciparum Len		1e-04

>pdb|1ZSO|A Chain A, Hypothetical Protein From Plasmodium Falciparum Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 3   NCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGGKG 62
           N ++ I A+LEN+  L     CDD  + + F ++     L++        + L     +G
Sbjct: 11  NTVVRIKAELENVKRL----FCDDE-YLWIFNIRDSTSSLTRDNIQFRKTDILEIPNSRG 65
Query: 63  TTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDF 115
           T N   K     +  T+  +  +    + E   +  +     F+CRG E +DF
Sbjct: 66  TANFXIKWTEYPKYSTINFVNTKN-SCSYEEVNNNEWRDFASFECRGIELIDF 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
1zso_A	164	Hypothetical protein; structural genomics, PSI, pr	7e-44

>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1 Length = 164

 Score =  140 bits (355), Expect = 7e-44
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQG 59
           M N ++ I A+LEN+  L       D  + + F ++                 + L    
Sbjct: 9   MKNTVVRIKAELENVKRLFC-----DDEYLWIFNIRDSTSSLTRDN-IQFRKTDILEIPN 62

Query: 60  GKGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGV 119
            +GT N + K     +  T+  +  +    + E   +  +     F+CRG E +DF    
Sbjct: 63  SRGTANFMIKWTEYPKYSTINFVNTKN-SCSYEEVNNNEWRDFASFECRGIELIDFFPSN 121

Query: 120 GWKVESVS 127
            + VE   
Sbjct: 122 NFIVEDTK 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
1zso_A	164	Hypothetical protein; structural genomics, PSI, pr	100.0
3j20_W	63	30S ribosomal protein S27E; archaea, archaeal, KIN	92.19
1qxf_A	66	GR2, 30S ribosomal protein S27E; structural genomi	90.1
2xzm_6	81	RPS27E; ribosome, translation; 3.93A {Tetrahymena	89.02
3iz6_X	86	40S ribosomal protein S27 (S27E); eukaryotic ribos	88.08
3u5c_b	82	RP61, YS20, 40S ribosomal protein S27-A; translati	85.53

>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1

Probab=100.00  E-value=6.6e-52  Score=317.52  Aligned_cols=123  Identities=20%  Similarity=0.331  Sum_probs=115.0

Q ss_pred             CceEEEEEEEEecceeeeeeCCCCCCCCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeEE
Q 032492            1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTV   79 (139)
Q Consensus         1 Mv~~~L~vkAeLenVt~l~p~~~~~~p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re~si   79 (139)
                      |++++|++||+||||++|+|.     |+|.|+|||||+ |||+|+| |+|+++|+++|+||||+||||+|||+|+|++||
T Consensus         9 ~~~~~L~i~AelenVt~L~p~-----~~~~~~fkvkC~~C~E~~~k-v~v~~~e~~ei~gsRG~aNfv~KCk~C~re~Si   82 (164)
T 1zso_A            9 MKNTVVRIKAELENVKRLFCD-----DEYLWIFNIRDSTSSLTRDN-IQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI   82 (164)
T ss_dssp             CCCEEEEEEEEEESEEEEECC-----TTCCEEEEEEETTSSCEEEE-EEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred             eEEEEEEEEEEEcCcceeecC-----CCcEEEEEEEECCCCcccCC-EEEcchheeecCCCCcceeEEEeccccCCcceE
Confidence            999999999999999999996     458999999999 9999999 999999999999999999999999999999999


Q ss_pred             EEecCCC-cccccccccCCCCccEEEEEccCceEEeEEeCCCEEEEEeecCceee
Q 032492           80 TMIPGRG-KPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFYSCPF  133 (139)
Q Consensus        80 ~i~~~~~-~~~~~e~~~~~~~~~I~~fdCRGlEpv~f~P~~~w~~~s~~~~~~~~  133 (139)
                      +|++++. ++|+.++  +++|++|++||||||||++|+|++||.|++++|+  .|
T Consensus        83 ~i~~~~~~~~y~~~d--~~k~~~i~~FDCRGlEp~eF~p~~~w~a~~~esG--~f  133 (164)
T 1zso_A           83 NFVNTKNSCSYEEVN--NNEWRDFASFECRGIELIDFFPSNNFIVEDTKGK--LY  133 (164)
T ss_dssp             EEECCTTTTEEEGGG--TTSCEEEEEEEEESEEEEEECCCSCEEEEETTSC--EE
T ss_pred             EEEeCCCCccccccc--CCCceEEEEEECCCeeeEEEecCCcEEEEECCCC--cE
Confidence            9999973 2787754  5799999999999999999999999999998877  55

>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=92.19  E-value=0.056  Score=34.86  Aligned_cols=34  Identities=29%  Similarity=0.720  Sum_probs=26.4

Q ss_pred             CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      |+ .||++|||. |+.+.   +.+            +.|..+.+|..|++.
T Consensus         9 Pn-S~Fm~VkCp~C~~~q---~VF------------Sha~t~V~C~~Cgt~   43 (63)
T 3j20_W            9 PR-SRFLRVKCIDCGNEQ---IVF------------SHPATKVRCLICGAT   43 (63)
T ss_dssp             CS-CCEEEEECSSSCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred             CC-CcEEEEECCCCCCee---EEE------------ecCCeEEEccCcCCE
Confidence            54 899999999 99875   222            346778999999875

>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4

Probab=90.10  E-value=0.13  Score=33.39  Aligned_cols=32  Identities=38%  Similarity=0.744  Sum_probs=24.8

Q ss_pred             eEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           30 SYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        30 ~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      .||++|||. |+.+.   +.+            +.|..+.+|..|++.
T Consensus         3 S~Fm~VKCp~C~niq---~VF------------ShA~tvV~C~~Cg~~   35 (66)
T 1qxf_A            3 SRFVKVKCPDCEHEQ---VIF------------DHPSTIVKCIICGRT   35 (66)
T ss_dssp             CCEEEEECTTTCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred             ceeEEEECCCCCCce---EEE------------ecCceEEEcccCCCE
Confidence            478999999 99875   222            346778999999975

>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6

Probab=89.02  E-value=0.17  Score=34.09  Aligned_cols=34  Identities=29%  Similarity=0.724  Sum_probs=26.3

Q ss_pred             CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      |+ .|+++|||. |+.+.   +.+            +.|..+.+|..|++.
T Consensus        26 Pn-S~Fm~VkCp~C~n~q---~VF------------ShA~t~V~C~~Cg~~   60 (81)
T 2xzm_6           26 PN-SYFMDVKCAQCQNIQ---MIF------------SNAQSTIICEKCSAI   60 (81)
T ss_dssp             CS-CCEEEEECSSSCCEE---EEE------------TTCSSCEECSSSCCE
T ss_pred             CC-CcEEEeECCCCCCee---EEE------------ecCccEEEccCCCCE
Confidence            54 789999999 99875   222            256788999999875

>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.08  E-value=0.14  Score=34.85  Aligned_cols=34  Identities=29%  Similarity=0.710  Sum_probs=23.8

Q ss_pred             CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      |+ .|+++|||. |+.+.   +.+            +.|..+..|..|+..
T Consensus        30 Pn-S~Fm~VkCp~C~~~~---~VF------------ShA~t~V~C~~Cgtv   64 (86)
T 3iz6_X           30 PN-SFFMDVKCQGCFNIT---TVF------------SHSQTVVVCPGCQTV   64 (86)
T ss_dssp             ----CEEEEECTTTCCEE---EEE------------TTCSSCCCCSSSCCC
T ss_pred             CC-CcEeEEECCCCCCee---EEE------------ecCCcEEEccCCCCE
Confidence            54 899999999 99875   222            345677889999875

>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b

Probab=85.53  E-value=0.3  Score=32.92  Aligned_cols=34  Identities=29%  Similarity=0.725  Sum_probs=25.9

Q ss_pred             CCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           27 PNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        27 p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      |+ .|+++|||. |+.+.   +.+            +.|..+..|..|++.
T Consensus        28 Pn-S~Fm~VkCp~C~~~q---~VF------------Sha~t~V~C~~Cg~~   62 (82)
T 3u5c_b           28 PR-SYFLDVKCPGCLNIT---TVF------------SHAQTAVTCESCSTI   62 (82)
T ss_dssp             CC-CCEEEEECTTSCSCE---EEE------------SBCSSCCCCSSSCCC
T ss_pred             CC-CcEEEEECCCCCCee---EEE------------ecCCeEEEccccCCE
Confidence            54 899999999 99875   222            345678889999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1zsoa1	156	b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.2	1e-46

>d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 156

class: All beta proteins
fold: MAL13P1.257-like
superfamily: MAL13P1.257-like
family: MAL13P1.257-like
domain: Hypothetical protein MAL13P1.257
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  146 bits (370), Expect = 1e-46
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 1   MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCGCGELSQKETCVSLAETLPTQGG 60
           M N ++ I A+LEN+  L       D  + + F ++     L++        + L     
Sbjct: 1   MKNTVVRIKAELENVKRLFC-----DDEYLWIFNIRDSTSSLTRDNIQFRKTDILEIPNS 55

Query: 61  KGTTNLIQKCKFCGREGTVTMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVG 120
           +GT N + K     +  T+  +  +    + E   +  +     F+CRG E +DF     
Sbjct: 56  RGTANFMIKWTEYPKYSTINFVNTKN-SCSYEEVNNNEWRDFASFECRGIELIDFFPSNN 114

Query: 121 WKVESVS 127
           + VE   
Sbjct: 115 FIVEDTK 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1zsoa1	156	Hypothetical protein MAL13P1.257 {Malaria parasite	100.0
d1qxfa_	58	Ribosomal protein S27e {Archaeon Archaeoglobus ful	87.92

>d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: All beta proteins
fold: MAL13P1.257-like
superfamily: MAL13P1.257-like
family: MAL13P1.257-like
domain: Hypothetical protein MAL13P1.257
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.3e-52  Score=317.35  Aligned_cols=122  Identities=20%  Similarity=0.344  Sum_probs=111.7

Q ss_pred             CceEEEEEEEEecceeeeeeCCCCCCCCceEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCeeEE
Q 032492            1 MVNCMLMISADLENLTNLQPQGGCDDPNFSYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGREGTV   79 (139)
Q Consensus         1 Mv~~~L~vkAeLenVt~l~p~~~~~~p~~~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re~si   79 (139)
                      ||+|+|+||||||||++|+|.+     +|.|+|||||+ |+|+|++ |+++++|++||+||||+||||+|||+|+|++||
T Consensus         1 M~~~~L~ikAeLeNV~~l~p~~-----~~~~~fkvkct~c~e~~~~-v~~~~~e~~e~~gsRG~Anfv~KCk~C~re~si   74 (156)
T d1zsoa1           1 MKNTVVRIKAELENVKRLFCDD-----EYLWIFNIRDSTSSLTRDN-IQFRKTDILEIPNSRGTANFMIKWTEYPKYSTI   74 (156)
T ss_dssp             CCCEEEEEEEEEESEEEEECCT-----TCCEEEEEEETTSSCEEEE-EEECTTCBEECTTSSCEESEEECCSSSSCCEEE
T ss_pred             CccEEEEEEEEECCcceeccCC-----CcEEEEEEEECCCCcCcCC-eEEcCcceEEcCCCCcEEEEEEECCCCCCeeeE
Confidence            9999999999999999999964     48999999999 9999988 799999999999999999999999999999999


Q ss_pred             EEecCCCcccccccccCCCCccEEEEEccCceEEeEEeCCCEEEEEeecC
Q 032492           80 TMIPGRGKPLTQEAAQSGGFSPLMLFDCRGYEPVDFVFGVGWKVESVSFY  129 (139)
Q Consensus        80 ~i~~~~~~~~~~e~~~~~~~~~I~~fdCRGlEpv~f~P~~~w~~~s~~~~  129 (139)
                      +|++.++. .+++++++++|++||+||||||||++|+|++||+|+++++.
T Consensus        75 ~i~~~~~~-~~y~~~~~~~~~~i~~fdCRGlEp~eF~p~~~w~a~~~~Gt  123 (156)
T d1zsoa1          75 NFVNTKNS-CSYEEVNNNEWRDFASFECRGIELIDFFPSNNFIVEDTKGK  123 (156)
T ss_dssp             EEECCTTT-TEEEGGGTTSCEEEEEEEEESEEEEEECCCSCEEEEETTSC
T ss_pred             EEEeCCCC-cccccccCCCccEEEEEECCCcEeEEEecCCCEEEEECCCC
Confidence            99998863 23444456899999999999999999999999999998643

>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein S27e
domain: Ribosomal protein S27e
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.92  E-value=0.11  Score=31.40  Aligned_cols=32  Identities=38%  Similarity=0.744  Sum_probs=25.2

Q ss_pred             eEEEEEEec-CCceeeceEEEecCeeEEeCCCCceeeEEEeeccCCCe
Q 032492           30 SYFFKLKCG-CGELSQKETCVSLAETLPTQGGKGTTNLIQKCKFCGRE   76 (139)
Q Consensus        30 ~~~fkvkCt-C~e~~~~~v~i~~~e~~e~~gsRG~aNfv~KCk~C~re   76 (139)
                      .||++|||. |+.+.   +.+            +.|+.+.+|..|++.
T Consensus         3 S~F~~VkC~~C~n~~---ivF------------sha~t~V~C~~Cg~~   35 (58)
T d1qxfa_           3 SRFVKVKCPDCEHEQ---VIF------------DHPSTIVKCIICGRT   35 (58)
T ss_dssp             CCEEEEECTTTCCEE---EEE------------SSCSSCEECSSSCCE
T ss_pred             ceeEEeECCCCCCeE---EEE------------ecCceEEEccccCCE
Confidence            589999999 99875   232            346788999999976