Citrus Sinensis ID: 032503

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHccHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEEcccccccccEEEccccccccccEEccccccccccccccccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHccHHHHHHHHHccccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEcccccEEEEEEEcccccccccEEcccccccccccEEEEEcEEEEEccHHHHHcc
Coil and Loop (DISEMBL)
MTAAADSVQKTEEEWRAILSPEQFRILRqkgteprgtgeynklyadgfyncagcgtALYKSvtkfdsgcgwpafyeglpgainrspdpdgrrteitcaacgghmghvfkgegfktptderhcvnsvsikfipgdapass
Flexible Loop (DISEMBL)
mtaaadsvqkteeewrailspeqfrilrqkgteprgtGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNsvsikfipgdapass
Low Complexity Region (SEG)
MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS
Disordered region (IsUnstruct)
*****************I*****FRIL*********TGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAI**********TEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFI********
Disordered Region (DISOPRED)
***********EEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSI***********
Disordered Region (DISEMBL)
*************EWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS
Disordered Region (DISPRO)
****ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q10L32	136	Peptide methionine sulfox	yes	no	0.949	0.970	0.820	4e-62
Q9C5C8	202	Peptide methionine sulfox	yes	no	0.942	0.648	0.809	1e-60
Q6AUK5	229	Peptide methionine sulfox	no	no	0.913	0.554	0.818	8e-60
Q9ZS91	139	Peptide methionine sulfox	no	no	0.971	0.971	0.762	8e-59
Q9M0Z5	139	Peptide methionine sulfox	no	no	0.956	0.956	0.729	6e-55
Q9M0Z6	176	Peptide methionine sulfox	no	no	0.935	0.738	0.746	2e-54
O49707	143	Peptide methionine sulfox	no	no	0.971	0.944	0.676	2e-53
Q84JT6	143	Peptide methionine sulfox	no	no	0.892	0.867	0.725	2e-52
Q8VY86	144	Peptide methionine sulfox	no	no	0.892	0.861	0.709	9e-52
Q8GWF4	153	Peptide methionine sulfox	no	no	0.906	0.823	0.642	2e-47

>sp|Q10L32|MSRB5_ORYSJ Peptide methionine sulfoxide reductase B5 OS=Oryza sativa subsp. japonica GN=MSRB5 PE=2 SV=1

 Score =  236 bits (601), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/134 (82%), Positives = 119/134 (88%), Gaps = 2/134 (1%)

Query: 1   MTAAADSV--QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTAL 58
           M ++ DS   Q+++EEWRA+LSPEQFRILR KGTE  GTGEYNK Y DG YNCAGCGT L
Sbjct: 1   MASSGDSSGKQRSDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPL 60

Query: 59  YKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTD 118
           YKS TKFDSGCGWPAF+EGLPGAINR+PDPDGRR EITCAACGGH+GHVFKGEGFKTPTD
Sbjct: 61  YKSTTKFDSGCGWPAFFEGLPGAINRTPDPDGRRVEITCAACGGHLGHVFKGEGFKTPTD 120

Query: 119 ERHCVNSVSIKFIP 132
           ERHCVNSVSIKF P
Sbjct: 121 ERHCVNSVSIKFTP 134

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q9C5C8|MSRB2_ARATH Peptide methionine sulfoxide reductase B2, chloroplastic OS=Arabidopsis thaliana GN=MSRB2 PE=1 SV=1

 Score =  231 bits (589), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/131 (80%), Positives = 117/131 (89%)

Query: 2   TAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKS 61
           ++A +SV K EEEWRAILSPEQFRILRQKGTE  GTGEYNK++ DG Y CAGCGT LYKS
Sbjct: 67  SSAPESVNKPEEEWRAILSPEQFRILRQKGTEYPGTGEYNKVFDDGIYCCAGCGTPLYKS 126

Query: 62  VTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERH 121
            TKFDSGCGWPAF++GLPGAI R+PDPDGRR EITCAACGGH+GHVFKGEGF TPTDERH
Sbjct: 127 TTKFDSGCGWPAFFDGLPGAITRTPDPDGRRIEITCAACGGHLGHVFKGEGFPTPTDERH 186

Query: 122 CVNSVSIKFIP 132
           CVNS+S+KF P
Sbjct: 187 CVNSISLKFTP 197

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Specifically reduces the MetSO R-enantiomer. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. May play an essential function in association with MSRB1 in maintaining vegetative growth during environmental constraints, through the preservation of photosynthetic antennae. MSRB1 and MSRB2 account for most of the leaf peptide MSR capacity.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q6AUK5|MSRB3_ORYSJ Peptide methionine sulfoxide reductase B3, chloroplastic OS=Oryza sativa subsp. japonica GN=MSRB3 PE=2 SV=1

 Score =  228 bits (581), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 104/127 (81%), Positives = 113/127 (88%)

Query: 8   VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDS 67
           VQK+EEEW AILSPEQFRILR KGTE  GTGEY+KL+A+G Y CAGCGT LYKS TKF+S
Sbjct: 98  VQKSEEEWEAILSPEQFRILRLKGTEYPGTGEYDKLFAEGVYECAGCGTPLYKSSTKFNS 157

Query: 68  GCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVS 127
           GCGWPAFYEG PGAI R+PDPDGRR EITCAACGGH+GHVFKGEGF TPTDERHCVNS+S
Sbjct: 158 GCGWPAFYEGFPGAIARTPDPDGRRIEITCAACGGHLGHVFKGEGFNTPTDERHCVNSIS 217

Query: 128 IKFIPGD 134
           +KFIP  
Sbjct: 218 LKFIPAS 224

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9ZS91|MSRB5_ARATH Peptide methionine sulfoxide reductase B5 OS=Arabidopsis thaliana GN=MSRB5 PE=2 SV=1

 Score =  224 bits (572), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 103/135 (76%), Positives = 115/135 (85%)

Query: 1   MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYK 60
           M A+   VQKTEEEWRA+LSPEQFRILRQKGTE  GTGEY+K + +G ++C GC T LYK
Sbjct: 1   MAASPLVVQKTEEEWRAVLSPEQFRILRQKGTEKPGTGEYDKFFEEGIFDCVGCKTPLYK 60

Query: 61  SVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDER 120
           S TKFDSGCGWPAF+EGLPGAINR+PDPDGRRTEITCAAC GH+GHVFKGEG+  PTDER
Sbjct: 61  STTKFDSGCGWPAFFEGLPGAINRTPDPDGRRTEITCAACDGHLGHVFKGEGYGNPTDER 120

Query: 121 HCVNSVSIKFIPGDA 135
           HCVNSVSI F P  +
Sbjct: 121 HCVNSVSISFNPAKS 135

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9M0Z5|MSRB4_ARATH Peptide methionine sulfoxide reductase B4 OS=Arabidopsis thaliana GN=MSRB4 PE=2 SV=1

 Score =  212 bits (539), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 97/133 (72%), Positives = 109/133 (81%)

Query: 1   MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYK 60
           M      V+KTEEEWRA+LSPEQFRILRQKGTE  GT EY+K + +G ++C GC T LYK
Sbjct: 1   MADLVTVVKKTEEEWRAVLSPEQFRILRQKGTETPGTEEYDKFFEEGIFSCIGCKTPLYK 60

Query: 61  SVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDER 120
           S TKFD+GCGWPAF+EGLPGAINR+PDPDGRRTEITCA C GH+GHV KGEG+ TPTDER
Sbjct: 61  STTKFDAGCGWPAFFEGLPGAINRAPDPDGRRTEITCAVCDGHLGHVHKGEGYSTPTDER 120

Query: 121 HCVNSVSIKFIPG 133
            CVNSVSI F P 
Sbjct: 121 LCVNSVSINFNPA 133

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9M0Z6|MSRB3_ARATH Peptide methionine sulfoxide reductase B3 OS=Arabidopsis thaliana GN=MSRB3 PE=2 SV=2

 Score =  210 bits (535), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/130 (74%), Positives = 106/130 (81%)

Query: 3   AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
           AA  SVQK +EEWRAILSPEQFRILRQKGTE  GTGEY     +G Y C GC   LYKS 
Sbjct: 42  AAPGSVQKGDEEWRAILSPEQFRILRQKGTEYPGTGEYVNFDKEGVYGCVGCNAPLYKST 101

Query: 63  TKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
           TKF++GCGWPAF+EG+PGAI R+ DPDGRR EI CA CGGH+GHVFKGEGF TPTDERHC
Sbjct: 102 TKFNAGCGWPAFFEGIPGAITRTTDPDGRRIEINCATCGGHLGHVFKGEGFATPTDERHC 161

Query: 123 VNSVSIKFIP 132
           VNSVS+KF P
Sbjct: 162 VNSVSLKFTP 171

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. Involved in cold tolerance. Eliminates MetSO and reactive oxygen species that accumulate at the ER during cold acclimation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O49707|MSRB8_ARATH Peptide methionine sulfoxide reductase B8 OS=Arabidopsis thaliana GN=MSRB8 PE=2 SV=1

 Score =  207 bits (526), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 113/139 (81%), Gaps = 4/139 (2%)

Query: 1   MTAAA----DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGT 56
           MTAAA     S QK +EEWRA+LSPEQFR+LR KGT+ RG GE+ K + +G Y+CAGCGT
Sbjct: 3   MTAAAVPSSGSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGT 62

Query: 57  ALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTP 116
           ALYKS TKFDSGCGWPAF++ +PGAI ++P+  GRR EITCA C GH+GHVFKGEG+ TP
Sbjct: 63  ALYKSTTKFDSGCGWPAFFDAIPGAIKQTPEAGGRRMEITCAVCDGHLGHVFKGEGYSTP 122

Query: 117 TDERHCVNSVSIKFIPGDA 135
           TD+RHCVNSVS+KF   D+
Sbjct: 123 TDQRHCVNSVSLKFASADS 141

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q84JT6|MSRB9_ARATH Peptide methionine sulfoxide reductase B9 OS=Arabidopsis thaliana GN=MSRB9 PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 106/124 (85%)

Query: 7   SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFD 66
           SVQK +++WRAILSPEQFR+LR+KGTE RG GEY KL+ DG Y+CAGC T LYKS TKFD
Sbjct: 14  SVQKKDQDWRAILSPEQFRVLREKGTENRGKGEYTKLFDDGIYSCAGCATPLYKSTTKFD 73

Query: 67  SGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSV 126
           SGCGWP+F++ +PGAI ++P+  GRR EITCAAC GH+GHV KGEGF T TDERHCVNSV
Sbjct: 74  SGCGWPSFFDAIPGAIKQTPEAGGRRMEITCAACDGHLGHVVKGEGFPTATDERHCVNSV 133

Query: 127 SIKF 130
           S+KF
Sbjct: 134 SLKF 137

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8VY86|MSRB7_ARATH Peptide methionine sulfoxide reductase B7 OS=Arabidopsis thaliana GN=MSRB7 PE=2 SV=1

 Score =  201 bits (512), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 106/124 (85%)

Query: 7   SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFD 66
           S QK +EEWRA+LSPEQFR+LR KGT+ RG GE+ K + +G Y+CAGCGTALYKS TKFD
Sbjct: 14  SFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGTALYKSTTKFD 73

Query: 67  SGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSV 126
           SGCGWPAF++ +PGAI ++P+  GRR EITCA C GH+GHVFKGEG+ TPTD+RHCVNSV
Sbjct: 74  SGCGWPAFFDAIPGAIKQTPEAGGRRMEITCAVCDGHLGHVFKGEGYSTPTDQRHCVNSV 133

Query: 127 SIKF 130
           S+KF
Sbjct: 134 SLKF 137

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q8GWF4|MSRB6_ARATH Peptide methionine sulfoxide reductase B6 OS=Arabidopsis thaliana GN=MSRB6 PE=2 SV=1

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 99/126 (78%)

Query: 5   ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTK 64
           A  ++K+ EEWR +LSPEQF+ILR+K  E RG+GEY KL+ +G Y C GCG  +YKS TK
Sbjct: 21  AGMIKKSNEEWRTVLSPEQFKILREKSIEKRGSGEYVKLFEEGIYCCVGCGNPVYKSTTK 80

Query: 65  FDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVN 124
           FDSGCGWPAF++ +PGAINR+ +  G R EITC  C GH+GHV K EGF TPTDERHCVN
Sbjct: 81  FDSGCGWPAFFDAIPGAINRTEERAGLRYEITCTKCDGHLGHVLKNEGFPTPTDERHCVN 140

Query: 125 SVSIKF 130
           SV++KF
Sbjct: 141 SVALKF 146

Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R-enantiomer.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
297736951	138	unnamed protein product [Vitis vinifera]	0.985	0.992	0.846	5e-64
357447579	139	Peptide methionine sulfoxide reductase m	0.992	0.992	0.811	1e-63
147819548	138	hypothetical protein VITISV_030219 [Viti	0.985	0.992	0.839	1e-63
225432466	170	PREDICTED: peptide methionine sulfoxide	0.956	0.782	0.857	2e-63
351723789	138	uncharacterized protein LOC100499893 [Gl	0.978	0.985	0.823	3e-63
242040867	134	hypothetical protein SORBIDRAFT_01g03475	0.949	0.985	0.840	6e-62
351724743	138	uncharacterized protein LOC100305558 [Gl	0.978	0.985	0.808	6e-62
449432763	139	PREDICTED: peptide methionine sulfoxide	0.956	0.956	0.812	4e-61
226495783	135	LOC100281999 [Zea mays] gi|195618858|gb|	0.971	1.0	0.807	7e-61
255554535	212	methionine sulfoxide reductase, putative	0.956	0.627	0.804	2e-60

>gi|297736951|emb|CBI26152.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 124/137 (90%)

Query: 3   AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
           AA  S+QK+EEEWRAILSPEQFRILRQKGTE RGTGEY+K Y DG YNC GCGT LYKS 
Sbjct: 2   AAEGSIQKSEEEWRAILSPEQFRILRQKGTELRGTGEYDKFYGDGIYNCGGCGTPLYKST 61

Query: 63  TKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
           TKF+SGCGWPAFYEGLPGAINR+PDPDGRRTEITCAACGGH+GHVFKGEGF TPTDERHC
Sbjct: 62  TKFNSGCGWPAFYEGLPGAINRTPDPDGRRTEITCAACGGHLGHVFKGEGFSTPTDERHC 121

Query: 123 VNSVSIKFIPGDAPASS 139
           VNSVSIKF P ++ ASS
Sbjct: 122 VNSVSIKFAPVNSSASS 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447579|ref|XP_003594065.1| Peptide methionine sulfoxide reductase msrB [Medicago truncatula] gi|355483113|gb|AES64316.1| Peptide methionine sulfoxide reductase msrB [Medicago truncatula] gi|388512751|gb|AFK44437.1| unknown [Medicago truncatula]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/138 (81%), Positives = 124/138 (89%)

Query: 1   MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYK 60
           M + A S++K+EEEWRA+LSPEQF ILRQKGTE +GTGEYNK Y +G YNCAGCGT LYK
Sbjct: 1   MASTASSIEKSEEEWRAVLSPEQFHILRQKGTELKGTGEYNKFYEEGVYNCAGCGTPLYK 60

Query: 61  SVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDER 120
           S TKFDSGCGWPAF+EG PGAINR PDPDGRRTEITCAACGGH+GHVFKGEGFK PTDER
Sbjct: 61  SSTKFDSGCGWPAFFEGFPGAINRYPDPDGRRTEITCAACGGHLGHVFKGEGFKVPTDER 120

Query: 121 HCVNSVSIKFIPGDAPAS 138
           HCVNSVS+KFIPG+A +S
Sbjct: 121 HCVNSVSVKFIPGNATSS 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819548|emb|CAN76573.1| hypothetical protein VITISV_030219 [Vitis vinifera]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 123/137 (89%)

Query: 3   AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
           AA  S+QK+EEEWRAILSPEQFRILRQKGTE RGTGEY+K Y DG YNC GCGT LYKS 
Sbjct: 2   AAEGSIQKSEEEWRAILSPEQFRILRQKGTELRGTGEYDKFYGDGIYNCGGCGTPLYKST 61

Query: 63  TKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
           TKF+S CGWPAFYEGLPGAINR+PDPDGRRTEITCAACGGH+GHVFKGEGF TPTDERHC
Sbjct: 62  TKFNSSCGWPAFYEGLPGAINRTPDPDGRRTEITCAACGGHLGHVFKGEGFSTPTDERHC 121

Query: 123 VNSVSIKFIPGDAPASS 139
           VNSVSIKF P ++ ASS
Sbjct: 122 VNSVSIKFAPXNSSASS 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432466|ref|XP_002278920.1| PREDICTED: peptide methionine sulfoxide reductase B5-like [Vitis vinifera]

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/133 (85%), Positives = 122/133 (91%)

Query: 7   SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFD 66
           S+QK+EEEWRAILSPEQFRILRQKGTE RGTGEY+K Y DG YNC GCGT LYKS TKF+
Sbjct: 38  SIQKSEEEWRAILSPEQFRILRQKGTELRGTGEYDKFYGDGIYNCGGCGTPLYKSTTKFN 97

Query: 67  SGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSV 126
           SGCGWPAFYEGLPGAINR+PDPDGRRTEITCAACGGH+GHVFKGEGF TPTDERHCVNSV
Sbjct: 98  SGCGWPAFYEGLPGAINRTPDPDGRRTEITCAACGGHLGHVFKGEGFSTPTDERHCVNSV 157

Query: 127 SIKFIPGDAPASS 139
           SIKF P ++ ASS
Sbjct: 158 SIKFAPVNSSASS 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723789|ref|NP_001237547.1| uncharacterized protein LOC100499893 [Glycine max] gi|255627479|gb|ACU14084.1| unknown [Glycine max]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 124/136 (91%)

Query: 3   AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
           AA   +QKTEEEW+ ILSPEQFRILRQKGTE +GTGEYNK Y +G YNCAGCGT LYKS 
Sbjct: 2   AAPTPIQKTEEEWKVILSPEQFRILRQKGTELKGTGEYNKFYEEGIYNCAGCGTPLYKSS 61

Query: 63  TKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
           TKFDSGCGWPAF+EG PGAI+RSPDPDGRRTEITCAACGGH+GHVFKGEGFKTPTDERHC
Sbjct: 62  TKFDSGCGWPAFFEGFPGAIDRSPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHC 121

Query: 123 VNSVSIKFIPGDAPAS 138
           VNS+S+KF+PG+A +S
Sbjct: 122 VNSISVKFVPGNASSS 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242040867|ref|XP_002467828.1| hypothetical protein SORBIDRAFT_01g034750 [Sorghum bicolor] gi|241921682|gb|EER94826.1| hypothetical protein SORBIDRAFT_01g034750 [Sorghum bicolor]

 Score =  241 bits (616), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 120/132 (90%)

Query: 1   MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYK 60
           M +  +S Q++EEEWRA+LSPEQFRI+RQKGTE  GTGEYNK Y DG YNCAGCGT LYK
Sbjct: 1   MASGDNSKQRSEEEWRAVLSPEQFRIIRQKGTELPGTGEYNKFYGDGVYNCAGCGTPLYK 60

Query: 61  SVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDER 120
           S TKFDSGCGWPAF+EGLPGAINR+PDPDGRRTEITCAACGGH+GHVFKGEGFKTPTDER
Sbjct: 61  STTKFDSGCGWPAFFEGLPGAINRTPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDER 120

Query: 121 HCVNSVSIKFIP 132
           HCVNSVSIKF P
Sbjct: 121 HCVNSVSIKFSP 132

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724743|ref|NP_001237068.1| uncharacterized protein LOC100305558 [Glycine max] gi|255625913|gb|ACU13301.1| unknown [Glycine max]

 Score =  241 bits (616), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 110/136 (80%), Positives = 121/136 (88%)

Query: 3   AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
           AA   + KTEEEW+ ILSPEQFRILRQKGTE +GTGEYNK + +G YNCAGCGT LYKS 
Sbjct: 2   AAPTPIHKTEEEWKVILSPEQFRILRQKGTELKGTGEYNKFFEEGIYNCAGCGTPLYKSS 61

Query: 63  TKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
           TKFDSGCGWPAF+EG PGAINR+PDPDGRRTEITCAACGGH+GHVFKGEGFKTPTDERHC
Sbjct: 62  TKFDSGCGWPAFFEGFPGAINRTPDPDGRRTEITCAACGGHLGHVFKGEGFKTPTDERHC 121

Query: 123 VNSVSIKFIPGDAPAS 138
           VNS+S+KF+PG A  S
Sbjct: 122 VNSISVKFVPGSATFS 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432763|ref|XP_004134168.1| PREDICTED: peptide methionine sulfoxide reductase B5-like isoform 1 [Cucumis sativus] gi|449432765|ref|XP_004134169.1| PREDICTED: peptide methionine sulfoxide reductase B5-like isoform 2 [Cucumis sativus]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/133 (81%), Positives = 121/133 (90%)

Query: 3   AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
           +A  S+QK+EEEWRAILSPEQFRI+RQKGTEPRGTG+Y+K Y +G YNCAGCGT LYKS 
Sbjct: 5   SAPASIQKSEEEWRAILSPEQFRIIRQKGTEPRGTGKYDKFYEEGIYNCAGCGTPLYKSS 64

Query: 63  TKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
           TKF+SGCGWPAF+EG PGAINR PDPDGRRTEITCAACGGH+GHVFKGEGF TPTDERHC
Sbjct: 65  TKFNSGCGWPAFFEGFPGAINRFPDPDGRRTEITCAACGGHLGHVFKGEGFGTPTDERHC 124

Query: 123 VNSVSIKFIPGDA 135
           VNS+S+KF P +A
Sbjct: 125 VNSISVKFAPANA 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226495783|ref|NP_001148386.1| LOC100281999 [Zea mays] gi|195618858|gb|ACG31259.1| peptide methionine sulfoxide reductase msrB [Zea mays] gi|414866916|tpg|DAA45473.1| TPA: peptide methionine sulfoxide reductase msrB [Zea mays]

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 109/135 (80%), Positives = 119/135 (88%)

Query: 1   MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYK 60
           M +  ++ Q++EEEWR +LSPEQFRILR KGTE  GTGEYNK Y DG YNCAGCGT LYK
Sbjct: 1   MASGNNNKQRSEEEWRVVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPLYK 60

Query: 61  SVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDER 120
           S TKFDSGCGWPAF+EGLPGAINR+PDPDGRR EITCAACGGH+GHVFKGEGFKTPTDER
Sbjct: 61  SATKFDSGCGWPAFFEGLPGAINRTPDPDGRRVEITCAACGGHLGHVFKGEGFKTPTDER 120

Query: 121 HCVNSVSIKFIPGDA 135
           HCVNSVSIKF PG +
Sbjct: 121 HCVNSVSIKFSPGSS 135

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554535|ref|XP_002518306.1| methionine sulfoxide reductase, putative [Ricinus communis] gi|223542526|gb|EEF44066.1| methionine sulfoxide reductase, putative [Ricinus communis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/133 (80%), Positives = 119/133 (89%)

Query: 3   AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
           AA  S+QK EEEWRAILSPEQFRILRQKGTE  GTGEY+K Y +G YNCAGCGT LY+S 
Sbjct: 80  AAPGSLQKPEEEWRAILSPEQFRILRQKGTEYPGTGEYDKFYEEGVYNCAGCGTPLYRST 139

Query: 63  TKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
           TKF+SGCGWPAFYEGLPGAINR+PDPDGRR EITCAACGGH+GHVFKGEGF TPT+ERHC
Sbjct: 140 TKFNSGCGWPAFYEGLPGAINRTPDPDGRRIEITCAACGGHLGHVFKGEGFPTPTNERHC 199

Query: 123 VNSVSIKFIPGDA 135
           VNS+S+KF P ++
Sbjct: 200 VNSISLKFFPANS 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2141702	202	MSRB2 "methionine sulfoxide re	0.942	0.648	0.809	5.7e-59
TAIR|locus:2138922	139	MSRB5 "methionine sulfoxide re	0.985	0.985	0.762	9.6e-57
TAIR|locus:2138902	139	MSRB4 "methionine sulfoxide re	0.935	0.935	0.748	3e-53
TAIR|locus:2138892	176	MSRB3 "methionine sulfoxide re	0.935	0.738	0.746	1.3e-52
TAIR|locus:2141677	143	MSRB8 "methionine sulfoxide re	0.971	0.944	0.676	1.2e-51
TAIR|locus:2141667	144	MSRB7 "methionine sulfoxide re	0.935	0.902	0.694	4e-51
TAIR|locus:2141692	143	MSRB9 "methionine sulfoxide re	0.892	0.867	0.725	1.3e-50
TAIR|locus:2138937	153	MSRB6 "methionine sulfoxide re	0.906	0.823	0.642	1.3e-45
DICTYBASE|DDB_G0291145	190	msrB "peptide-methionine (R)-S	0.877	0.642	0.624	1.4e-41
CGD|CAL0003438	147	orf19.3292 [Candida albicans (	0.920	0.870	0.628	9.6e-41

TAIR|locus:2141702 MSRB2 "methionine sulfoxide reductase B 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 106/131 (80%), Positives = 117/131 (89%)

Query:     2 TAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKS 61
             ++A +SV K EEEWRAILSPEQFRILRQKGTE  GTGEYNK++ DG Y CAGCGT LYKS
Sbjct:    67 SSAPESVNKPEEEWRAILSPEQFRILRQKGTEYPGTGEYNKVFDDGIYCCAGCGTPLYKS 126

Query:    62 VTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERH 121
              TKFDSGCGWPAF++GLPGAI R+PDPDGRR EITCAACGGH+GHVFKGEGF TPTDERH
Sbjct:   127 TTKFDSGCGWPAFFDGLPGAITRTPDPDGRRIEITCAACGGHLGHVFKGEGFPTPTDERH 186

Query:   122 CVNSVSIKFIP 132
             CVNS+S+KF P
Sbjct:   187 CVNSISLKFTP 197

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2138922 MSRB5 "methionine sulfoxide reductase B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 106/139 (76%), Positives = 118/139 (84%)

Query:     1 MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYK 60
             M A+   VQKTEEEWRA+LSPEQFRILRQKGTE  GTGEY+K + +G ++C GC T LYK
Sbjct:     1 MAASPLVVQKTEEEWRAVLSPEQFRILRQKGTEKPGTGEYDKFFEEGIFDCVGCKTPLYK 60

Query:    61 SVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDER 120
             S TKFDSGCGWPAF+EGLPGAINR+PDPDGRRTEITCAAC GH+GHVFKGEG+  PTDER
Sbjct:    61 STTKFDSGCGWPAFFEGLPGAINRTPDPDGRRTEITCAACDGHLGHVFKGEGYGNPTDER 120

Query:   121 HCVNSVSIKFIPGDAPASS 139
             HCVNSVSI F P  A +SS
Sbjct:   121 HCVNSVSISFNP--AKSSS 137

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2138902 MSRB4 "methionine sulfoxide reductase B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 98/131 (74%), Positives = 111/131 (84%)

Query:     8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDS 67
             V+KTEEEWRA+LSPEQFRILRQKGTE  GT EY+K + +G ++C GC T LYKS TKFD+
Sbjct:     8 VKKTEEEWRAVLSPEQFRILRQKGTETPGTEEYDKFFEEGIFSCIGCKTPLYKSTTKFDA 67

Query:    68 GCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVS 127
             GCGWPAF+EGLPGAINR+PDPDGRRTEITCA C GH+GHV KGEG+ TPTDER CVNSVS
Sbjct:    68 GCGWPAFFEGLPGAINRAPDPDGRRTEITCAVCDGHLGHVHKGEGYSTPTDERLCVNSVS 127

Query:   128 IKFIPGDAPAS 138
             I F P   P+S
Sbjct:   128 INFNPAK-PSS 137

GO:0005737 "cytoplasm" evidence=ISM

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2138892 MSRB3 "methionine sulfoxide reductase B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 97/130 (74%), Positives = 106/130 (81%)

Query:     3 AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
             AA  SVQK +EEWRAILSPEQFRILRQKGTE  GTGEY     +G Y C GC   LYKS 
Sbjct:    42 AAPGSVQKGDEEWRAILSPEQFRILRQKGTEYPGTGEYVNFDKEGVYGCVGCNAPLYKST 101

Query:    63 TKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
             TKF++GCGWPAF+EG+PGAI R+ DPDGRR EI CA CGGH+GHVFKGEGF TPTDERHC
Sbjct:   102 TKFNAGCGWPAFFEGIPGAITRTTDPDGRRIEINCATCGGHLGHVFKGEGFATPTDERHC 161

Query:   123 VNSVSIKFIP 132
             VNSVS+KF P
Sbjct:   162 VNSVSLKFTP 171

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0070191 "methionine-R-sulfoxide reductase activity" evidence=IMP

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2141677 MSRB8 "methionine sulfoxide reductase B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 94/139 (67%), Positives = 113/139 (81%)

Query:     1 MTAAA----DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGT 56
             MTAAA     S QK +EEWRA+LSPEQFR+LR KGT+ RG GE+ K + +G Y+CAGCGT
Sbjct:     3 MTAAAVPSSGSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGT 62

Query:    57 ALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTP 116
             ALYKS TKFDSGCGWPAF++ +PGAI ++P+  GRR EITCA C GH+GHVFKGEG+ TP
Sbjct:    63 ALYKSTTKFDSGCGWPAFFDAIPGAIKQTPEAGGRRMEITCAVCDGHLGHVFKGEGYSTP 122

Query:   117 TDERHCVNSVSIKFIPGDA 135
             TD+RHCVNSVS+KF   D+
Sbjct:   123 TDQRHCVNSVSLKFASADS 141

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2141667 MSRB7 "methionine sulfoxide reductase B7" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 93/134 (69%), Positives = 111/134 (82%)

Query:     1 MTAAA----DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGT 56
             MTAAA     S QK +EEWRA+LSPEQFR+LR KGT+ RG GE+ K + +G Y+CAGCGT
Sbjct:     4 MTAAAVPATGSFQKQDEEWRAVLSPEQFRVLRLKGTDKRGKGEFTKKFEEGTYSCAGCGT 63

Query:    57 ALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTP 116
             ALYKS TKFDSGCGWPAF++ +PGAI ++P+  GRR EITCA C GH+GHVFKGEG+ TP
Sbjct:    64 ALYKSTTKFDSGCGWPAFFDAIPGAIKQTPEAGGRRMEITCAVCDGHLGHVFKGEGYSTP 123

Query:   117 TDERHCVNSVSIKF 130
             TD+RHCVNSVS+KF
Sbjct:   124 TDQRHCVNSVSLKF 137

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0000304 "response to singlet oxygen" evidence=IEP

TAIR|locus:2141692 MSRB9 "methionine sulfoxide reductase B9" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 90/124 (72%), Positives = 106/124 (85%)

Query:     7 SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFD 66
             SVQK +++WRAILSPEQFR+LR+KGTE RG GEY KL+ DG Y+CAGC T LYKS TKFD
Sbjct:    14 SVQKKDQDWRAILSPEQFRVLREKGTENRGKGEYTKLFDDGIYSCAGCATPLYKSTTKFD 73

Query:    67 SGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSV 126
             SGCGWP+F++ +PGAI ++P+  GRR EITCAAC GH+GHV KGEGF T TDERHCVNSV
Sbjct:    74 SGCGWPSFFDAIPGAIKQTPEAGGRRMEITCAACDGHLGHVVKGEGFPTATDERHCVNSV 133

Query:   127 SIKF 130
             S+KF
Sbjct:   134 SLKF 137

GO:0005737 "cytoplasm" evidence=ISM

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2138937 MSRB6 "methionine sulfoxide reductase B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 81/126 (64%), Positives = 99/126 (78%)

Query:     5 ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTK 64
             A  ++K+ EEWR +LSPEQF+ILR+K  E RG+GEY KL+ +G Y C GCG  +YKS TK
Sbjct:    21 AGMIKKSNEEWRTVLSPEQFKILREKSIEKRGSGEYVKLFEEGIYCCVGCGNPVYKSTTK 80

Query:    65 FDSGCGWPAFYEGLPGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVN 124
             FDSGCGWPAF++ +PGAINR+ +  G R EITC  C GH+GHV K EGF TPTDERHCVN
Sbjct:    81 FDSGCGWPAFFDAIPGAINRTEERAGLRYEITCTKCDGHLGHVLKNEGFPTPTDERHCVN 140

Query:   125 SVSIKF 130
             SV++KF
Sbjct:   141 SVALKF 146

GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

DICTYBASE|DDB_G0291145 msrB "peptide-methionine (R)-S-oxide reductase" [Dictyostelium discoideum (taxid:44689)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 78/125 (62%), Positives = 94/125 (75%)

Query:    11 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
             +E+EWR  L+P QF++LR+KGTE   +GEYNK Y  G YNCA C T L+KS  KF SGCG
Sbjct:    64 SEDEWRVKLTPAQFKVLREKGTERPDSGEYNKNYEKGVYNCAACDTPLFKSEHKFSSGCG 123

Query:    71 WPAFYEGLPGAINRSPDPD--GR-RTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVS 127
             WP+FY+ +PGA+    DP   GR RTEI CA CG HMGHVFKGE F TP D+RHCVNS+S
Sbjct:   124 WPSFYDSIPGALVLHEDPSLPGRPRTEICCAKCGSHMGHVFKGEKFNTPIDQRHCVNSIS 183

Query:   128 IKFIP 132
             +KF+P
Sbjct:   184 LKFLP 188

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

CGD|CAL0003438 orf19.3292 [Candida albicans (taxid:5476)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 83/132 (62%), Positives = 96/132 (72%)

Query:     7 SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYAD--GFYNCAGCGTALYKSVTK 64
             ++ K++ EWRAILSPEQFR+LRQ GTE   TGEY    A   G+Y CAGC   LYK+ TK
Sbjct:    13 NMSKSDSEWRAILSPEQFRVLRQGGTEAPYTGEYTNTPASDVGYYECAGCKYPLYKANTK 72

Query:    65 FDSGCGWPAFYEGLPGAINRSPDPD-GR-RTEITCAACGGHMGHVFKGEGFKTPTDERHC 122
             F + CGWPAFYE LPGA+    D   G  R E+ C+ C GH+GHVFKGEG+KTPTDERHC
Sbjct:    73 FKAHCGWPAFYEALPGAVKIYRDESHGMIREEMRCSNCDGHLGHVFKGEGYKTPTDERHC 132

Query:   123 VNSVSIKFIPGD 134
             VNSVSIKF P D
Sbjct:   133 VNSVSIKFNPQD 144

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0033743 "peptide-methionine (R)-S-oxide reductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q89EM9	MSRB_BRAJA	1, ., 8, ., 4, ., 1, 2	0.4656	0.8920	0.8920	yes	no
Q47EU6	MSRB_DECAR	1, ., 8, ., 4, ., 1, 2	0.4603	0.8705	0.9166	yes	no
Q2SJP9	MSRB_HAHCH	1, ., 8, ., 4, ., 1, 2	0.4379	0.9208	0.9208	yes	no
Q48FR2	MSRB_PSE14	1, ., 8, ., 4, ., 1, 2	0.4461	0.8992	0.9541	yes	no
Q3K935	MSRB_PSEPF	1, ., 8, ., 4, ., 1, 2	0.4461	0.8992	0.9541	yes	no
Q8F7W8	MSRB_LEPIN	1, ., 8, ., 4, ., 1, 2	0.4920	0.8705	0.9236	yes	no
Q84JT6	MSRB9_ARATH	1, ., 8, ., 4, ., 1, 2	0.7258	0.8920	0.8671	no	no
Q8VY86	MSRB7_ARATH	1, ., 8, ., 4, ., 1, 2	0.7096	0.8920	0.8611	no	no
Q4ZQC6	MSRB_PSEU2	1, ., 8, ., 4, ., 1, 2	0.4503	0.9064	0.9618	yes	no
Q3SJU1	MSRB_THIDA	1, ., 8, ., 4, ., 1, 2	0.4921	0.8848	0.9318	yes	no
A5W756	MSRB_PSEP1	1, ., 8, ., 4, ., 1, 2	0.4538	0.8992	0.9541	yes	no
A3M4Q3	MSRB_ACIBT	1, ., 8, ., 4, ., 1, 2	0.4682	0.8705	0.8705	yes	no
Q10L32	MSRB5_ORYSJ	1, ., 8, ., 4, ., 1, 2	0.8208	0.9496	0.9705	yes	no
O26807	MSRB_METTH	1, ., 8, ., 4, ., 1, 2	0.4436	0.9208	0.8476	yes	no
Q9M0Z5	MSRB4_ARATH	1, ., 8, ., 4, ., 1, 2	0.7293	0.9568	0.9568	no	no
B7I415	MSRB_ACIB5	1, ., 8, ., 4, ., 1, 2	0.4682	0.8705	0.8705	yes	no
B0KUQ0	MSRB_PSEPG	1, ., 8, ., 4, ., 1, 2	0.4461	0.8992	0.9541	yes	no
Q4K8U5	MSRB_PSEF5	1, ., 8, ., 4, ., 1, 2	0.4384	0.8992	0.9615	yes	no
B1J4W5	MSRB_PSEPW	1, ., 8, ., 4, ., 1, 2	0.4692	0.8992	0.9398	yes	no
Q8DJK9	MSRB_THEEB	1, ., 8, ., 4, ., 1, 2	0.4552	0.9280	0.9555	yes	no
C5BR54	MSRB_TERTT	1, ., 8, ., 4, ., 1, 2	0.4728	0.8920	0.9185	yes	no
B0VC45	MSRB_ACIBY	1, ., 8, ., 4, ., 1, 2	0.4682	0.8705	0.8705	yes	no
Q1QXV3	MSRB_CHRSD	1, ., 8, ., 4, ., 1, 2	0.4511	0.9280	0.9699	yes	no
Q6FAL8	MSRB_ACIAD	1, ., 8, ., 4, ., 1, 2	0.4761	0.8705	0.8705	yes	no
Q88LQ6	MSRB_PSEPK	1, ., 8, ., 4, ., 1, 2	0.4461	0.8992	0.9541	yes	no
Q6ADJ8	MSRB_LEIXX	1, ., 8, ., 4, ., 1, 2	0.5114	0.9136	0.9136	yes	no
C3K735	MSRB_PSEFS	1, ., 8, ., 4, ., 1, 2	0.4461	0.8992	0.9615	yes	no
B2HYT2	MSRB_ACIBC	1, ., 8, ., 4, ., 1, 2	0.4682	0.8705	0.8705	yes	no
B0VR86	MSRB_ACIBS	1, ., 8, ., 4, ., 1, 2	0.4682	0.8705	0.8705	yes	no
B7H3X2	MSRB_ACIB3	1, ., 8, ., 4, ., 1, 2	0.4682	0.8705	0.8705	yes	no
Q46EH1	MSRB_METBF	1, ., 8, ., 4, ., 1, 2	0.4621	0.8848	0.8661	yes	no
Q9ZS91	MSRB5_ARATH	1, ., 8, ., 4, ., 1, 2	0.7629	0.9712	0.9712	no	no
A2SGN7	MSRB_METPP	1, ., 8, ., 4, ., 1, 2	0.4687	0.8848	0.8913	yes	no
Q9C5C8	MSRB2_ARATH	1, ., 8, ., 4, ., 1, 2	0.8091	0.9424	0.6485	yes	no
Q8UGX7	MSRB_AGRT5	1, ., 8, ., 4, ., 1, 2	0.4687	0.8848	0.9111	yes	no
Q8PWF5	MSRB_METMA	1, ., 8, ., 4, ., 1, 2	0.4469	0.8848	0.8785	yes	no
Q1ID16	MSRB_PSEE4	1, ., 8, ., 4, ., 1, 2	0.4615	0.8992	0.9541	yes	no
Q9Y7K1	YGL4_SCHPO	No assigned EC number	0.5158	0.8848	0.8913	yes	no
Q885Q1	MSRB_PSESM	1, ., 8, ., 4, ., 1, 2	0.4538	0.8992	0.9541	yes	no
A5GQT3	MSRB_SYNR3	1, ., 8, ., 4, ., 1, 2	0.5	0.8848	0.9044	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.4	LOW CONFIDENCE prediction!
4th Layer	1.8.4.12	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam01641	124	pfam01641, SelR, SelR domain	2e-68
PRK05550	283	PRK05550, PRK05550, bifunctional methionine sulfox	1e-58
COG0229	140	COG0229, COG0229, Conserved domain frequently asso	8e-58
PRK05508	119	PRK05508, PRK05508, methionine sulfoxide reductase	9e-58
PRK00222	142	PRK00222, PRK00222, methionine sulfoxide reductase	8e-55
TIGR00357	134	TIGR00357, TIGR00357, methionine-R-sulfoxide reduc	6e-44
PRK14018	521	PRK14018, PRK14018, trifunctional thioredoxin/meth	2e-21

>gnl|CDD|201899 pfam01641, SelR, SelR domain

 Score =  201 bits (514), Expect = 2e-68
 Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 4/125 (3%)

Query: 12  EEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGW 71
           +EEW+A+LSPEQ+R+LR KGTE   TGEY+  + +G Y C GCG  L+ S TKFDSGCGW
Sbjct: 1   DEEWKAVLSPEQYRVLRNKGTEKPFTGEYDDHFEEGIYVCIGCGEPLFSSTTKFDSGCGW 60

Query: 72  PAFYEGLPG-AINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSI 128
           P+F+E + G AI  +PD     RRTE+ CA C GH+GHVFK +G K P   R+C+NS S+
Sbjct: 61  PSFFEPISGDAIKYTPDRSHGMRRTEVRCANCDGHLGHVFK-DGPKEPGGLRYCINSASL 119

Query: 129 KFIPG 133
           KFIP 
Sbjct: 120 KFIPA 124

Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity. Length = 124

>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional

 Score =  182 bits (464), Expect = 1e-58
 Identities = 63/121 (52%), Positives = 82/121 (67%), Gaps = 1/121 (0%)

Query: 19  LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL 78
           L+P ++R++  KGTE   +GEY      G Y C  CG  L++S  KF+SGCGWP+F + +
Sbjct: 7   LTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFDDEI 66

Query: 79  PGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPAS 138
           PGA+ R PD DGRRTEI CA CG H+GHVF+GEG  TP + RHCVNS S+ F+P +  A 
Sbjct: 67  PGAVKRLPDADGRRTEIVCANCGAHLGHVFEGEGL-TPKNTRHCVNSASLDFVPAEEGAY 125

Query: 139 S 139
            
Sbjct: 126 D 126

Length = 283

>gnl|CDD|223307 COG0229, COG0229, Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

 Score =  175 bits (446), Expect = 8e-58
 Identities = 55/133 (41%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 7   SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFD 66
            ++ ++EE +  L+PEQ+R+ +  GTE   TGEY      G Y C  CG  L+ S  KFD
Sbjct: 1   YIKPSDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFD 60

Query: 67  SGCGWPAFYEGL-PGAINRSPDP--DGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCV 123
           SGCGWP+F + + P AI    D      RTE+ CA C  H+GHVF      T    R+C+
Sbjct: 61  SGCGWPSFTKPISPDAITYKEDRSHGMVRTEVRCANCDSHLGHVFPDGPPPTG-GLRYCI 119

Query: 124 NSVSIKFIPGDAP 136
           NS S++FIP +  
Sbjct: 120 NSASLRFIPKEEM 132

Length = 140

>gnl|CDD|180121 PRK05508, PRK05508, methionine sulfoxide reductase B; Provisional

 Score =  174 bits (444), Expect = 9e-58
 Identities = 67/114 (58%), Positives = 85/114 (74%), Gaps = 1/114 (0%)

Query: 19  LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL 78
           L+PE+  ++ +KGTEP  +GEYN  +  G Y C  CG  LY+S  KF SGCGWP+F + +
Sbjct: 4   LTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFDDEI 63

Query: 79  PGAINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIP 132
            GA+ R PD DGRRTEI CA CGGH+GHVF+GEGF TP + RHCVNS+S+KF+P
Sbjct: 64  KGAVKRIPDADGRRTEIVCANCGGHLGHVFEGEGF-TPKNTRHCVNSISLKFVP 116

Length = 119

>gnl|CDD|234692 PRK00222, PRK00222, methionine sulfoxide reductase B; Provisional

 Score =  168 bits (427), Expect = 8e-55
 Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 5/130 (3%)

Query: 8   VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDS 67
           ++K++EEW+  L+PEQ+R+ ++ GTE   TGEY      G Y C  CG  L+ S TKFDS
Sbjct: 3   IEKSKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDS 62

Query: 68  GCGWPAFYEGL-PGAINRSPDPD-GR-RTEITCAACGGHMGHVFKGEGFKTPTDERHCVN 124
           GCGWP+F + +   AI    D   G  RTE+ CA C  H+GHVF  +G K PT  R+C+N
Sbjct: 63  GCGWPSFTKPIDEEAIRELRDTSHGMVRTEVRCANCDSHLGHVFP-DGPK-PTGLRYCIN 120

Query: 125 SVSIKFIPGD 134
           S S+KFIP D
Sbjct: 121 SASLKFIPKD 130

Length = 142

>gnl|CDD|129454 TIGR00357, TIGR00357, methionine-R-sulfoxide reductase

 Score =  140 bits (354), Expect = 6e-44
 Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 7/130 (5%)

Query: 9   QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSG 68
           + ++EE +  L+P Q+ + +  GTEP  T EY     +G Y    CG  L+ S  KFDSG
Sbjct: 1   KPSDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSG 60

Query: 69  CGWPAFYEGLPGAI--NRSPDPDGR-RTEITCAACGGHMGHVFK-GEGFKTPTDERHCVN 124
           CGWP+FY+ +   +      +  G  RTE+ C  C  H+GHVF  G     PT  R+C+N
Sbjct: 61  CGWPSFYKPISEEVVAYERDESHGMIRTEVRCRNCDAHLGHVFDDGPE---PTGLRYCIN 117

Query: 125 SVSIKFIPGD 134
           S ++KFIP +
Sbjct: 118 SAALKFIPLE 127

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested [Protein fate, Protein modification and repair, Cellular processes, Adaptations to atypical conditions]. Length = 134

>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

 Score = 88.4 bits (219), Expect = 2e-21
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 11  TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
           ++ E +  L+ EQ++I +   TE   + EY+ L+  G Y     G  L+ S  K+DSGCG
Sbjct: 381 SDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 440

Query: 71  WPAFYEGL-PGAINRSPDP--DGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVS 127
           WP+F   +    +    D   + RRTE+   A   H+GHVF  +G +     R+C+N  S
Sbjct: 441 WPSFTRPIDAKVVTEHDDFSYNMRRTEVRSRAADSHLGHVFP-DGPRDKGGLRYCINGAS 499

Query: 128 IKFIPGD 134
           +KFIP +
Sbjct: 500 LKFIPLE 506

Length = 521

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
COG0229	140	Conserved domain frequently associated with peptid	100.0
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	100.0
PRK00222	142	methionine sulfoxide reductase B; Provisional	100.0
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	100.0
PRK05508	119	methionine sulfoxide reductase B; Provisional	100.0
KOG0856	146	consensus Predicted pilin-like transcription facto	100.0
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	100.0
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	93.61

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.8e-73  Score=431.00  Aligned_cols=126  Identities=45%  Similarity=0.893  Sum_probs=120.7

Q ss_pred             CCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCccc-CCCeEEcc
Q 032503            8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSP   86 (139)
Q Consensus         8 ~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i-~~~v~~~~   86 (139)
                      +.+++++||+.|||+||+|||++|||+||+|+||+++++|||+|++||+|||+|.+|||||||||||++|| +++|++++
T Consensus         2 ~~~sd~e~~~~Lt~~qy~Vtq~~gTE~pft~~y~~~~~~GiY~c~~cg~pLF~S~~KfdSgcGWPSF~~pi~~~~I~~~~   81 (140)
T COG0229           2 IKPSDEELKEKLTPEQYRVTQNHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSEDKFDSGCGWPSFTKPISPDAITYKE   81 (140)
T ss_pred             CccchHHHHHhcCHHHHHHHHhcCCCCCCCChhhcccCCceEEeecCCCccccccccccCCCCCccccccCCcccceEee
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999 55999999


Q ss_pred             CCC--cceeEEEecCCCCCcccccCCCCCCCCCC-ceeeeccceeeeeeCCC
Q 032503           87 DPD--GRRTEITCAACGGHMGHVFKGEGFKTPTD-ERHCVNSVSIKFIPGDA  135 (139)
Q Consensus        87 D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg-~RyCINs~sL~F~p~~~  135 (139)
                      |.|  |.||||+|++|++||||||+ || |.|+| +|||||||||+|+|.++
T Consensus        82 D~S~gM~RtEVrc~~c~sHLGHVF~-DG-P~~tgglRYCINSasL~Fip~~~  131 (140)
T COG0229          82 DRSHGMVRTEVRCANCDSHLGHVFP-DG-PPPTGGLRYCINSASLRFIPKEE  131 (140)
T ss_pred             ccCCCcEEEEEEecCCCCccccccC-CC-CCCCCCeeEeecchheeecchhh
Confidence            999  99999999999999999999 88 66777 99999999999999864

>TIGR00357 methionine-R-sulfoxide reductase

Probab=100.00  E-value=1.7e-71  Score=422.89  Aligned_cols=125  Identities=41%  Similarity=0.801  Sum_probs=120.7

Q ss_pred             CCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCccc-CCCeEEccCC
Q 032503           10 KTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDP   88 (139)
Q Consensus        10 ~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i-~~~v~~~~D~   88 (139)
                      ++++|||+.|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++||+||||||||+++| +++|+++.|.
T Consensus         2 ~~~~ewr~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~V~~~~D~   81 (134)
T TIGR00357         2 PSDEELKKKLTPLQYEVTQNAGTEPPFTNEYWDNKEEGIYVDITCGEPLFSSEDKFDSGCGWPSFYKPISEEVVAYERDE   81 (134)
T ss_pred             CCHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCCCCeEEEccCCCCccccccchhcCCCCCcCcCcccCCCceEEeecC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999 6799999999


Q ss_pred             C--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCCC
Q 032503           89 D--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAP  136 (139)
Q Consensus        89 s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~~  136 (139)
                      +  |+||||+|++||+||||||+ || |+|||+||||||+||+|+|.++.
T Consensus        82 s~gm~RtEv~C~~Cg~HLGHVF~-DG-P~ptg~RyCINs~sL~F~p~~~~  129 (134)
T TIGR00357        82 SHGMIRTEVRCRNCDAHLGHVFD-DG-PEPTGLRYCINSAALKFIPLEEM  129 (134)
T ss_pred             CCCcEEEEEEecCCCCccCcccC-CC-CCCCCceEeecceeEecccchhh
Confidence            8  99999999999999999998 88 78999999999999999998643

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=6.1e-71  Score=423.26  Aligned_cols=127  Identities=48%  Similarity=0.923  Sum_probs=122.4

Q ss_pred             CCCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCccc-CCCeEEc
Q 032503            7 SVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRS   85 (139)
Q Consensus         7 ~~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i-~~~v~~~   85 (139)
                      ++.++++|||+.|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++||+||||||||+++| +++|+++
T Consensus         2 ~~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~~~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~V~~~   81 (142)
T PRK00222          2 KIEKSKEEWKKQLTPEQYRVTQEHGTERPFTGEYLDNKEKGIYVCIVCGEPLFSSDTKFDSGCGWPSFTKPIDEEAIREL   81 (142)
T ss_pred             CccCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCchhcCCcccccCCCCCcCcCcccCCCceEEe
Confidence            567899999999999999999999999999999999999999999999999999999999999999999999 5699999


Q ss_pred             cCCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCC
Q 032503           86 PDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDA  135 (139)
Q Consensus        86 ~D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~  135 (139)
                      +|.+  |.||||+|++||+||||||+ || |+|||+||||||+||+|+|+++
T Consensus        82 ~D~s~gm~RtEv~C~~Cg~HLGHVF~-DG-P~ptg~RyCINs~sL~F~p~~~  131 (142)
T PRK00222         82 RDTSHGMVRTEVRCANCDSHLGHVFP-DG-PKPTGLRYCINSASLKFIPKDG  131 (142)
T ss_pred             eccCCCceEEEEEeCCCCCccCcccC-CC-CCCCCCEeeeceeeEEeeccch
Confidence            9998  99999999999999999998 88 7899999999999999999864

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=100.00  E-value=1.1e-70  Score=413.91  Aligned_cols=121  Identities=55%  Similarity=1.052  Sum_probs=113.7

Q ss_pred             HHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCC-CeEEccCCC-
Q 032503           12 EEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPD-   89 (139)
Q Consensus        12 ~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~-~v~~~~D~s-   89 (139)
                      |+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++||+||||||||++||++ +|+++.|.+ 
T Consensus         1 d~ew~~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~~v~~~~D~s~   80 (124)
T PF01641_consen    1 DEEWRKRLTPEQYRVLREKGTERPFSGEYWDHKEEGIYVCAVCGTPLFSSDTKFDSGCGWPSFWQPIPGDAVKEREDFSH   80 (124)
T ss_dssp             -HHHHHHSCHHHHHHHHHTTSSSTTSSGGCCTTSSEEEEETTTS-EEEEGGGEETSSSSSSEESSCSSTTSEEEEEEECT
T ss_pred             CHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEcCCCCCccccCcccccCCcCCccccCcCChHHEEEeccccC
Confidence            689999999999999999999999999999999999999999999999999999999999999999977 999999999 


Q ss_pred             -cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeC
Q 032503           90 -GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPG  133 (139)
Q Consensus        90 -m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~  133 (139)
                       |+||||+|++||+||||||+ |||++|||+||||||+||+|+|+
T Consensus        81 g~~R~Ev~C~~Cg~HLGHVF~-DGp~~~tg~RyCINS~sL~F~p~  124 (124)
T PF01641_consen   81 GMVRTEVRCARCGSHLGHVFD-DGPPPPTGLRYCINSASLKFIPK  124 (124)
T ss_dssp             SSEEEEEEETTTCCEEEEEES-TSSTTCTSCEEEE-GGGEEEEE-
T ss_pred             CceEEEEEecCCCCccccEeC-CCCCCCCCcEEEeeeeeEEEecC
Confidence             99999999999999999999 99655689999999999999995

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=100.00  E-value=1.5e-69  Score=405.32  Aligned_cols=117  Identities=54%  Similarity=1.086  Sum_probs=112.8

Q ss_pred             hcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCCCeEEccCCCcceeEEE
Q 032503           17 AILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTEIT   96 (139)
Q Consensus        17 ~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~~~D~sm~RtEv~   96 (139)
                      ++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++|||||||||||++||+++|++++|.+|.||||+
T Consensus         2 ~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~~D~~~~RtEv~   81 (119)
T PRK05508          2 NELTPEEEAVILRKGTEPPFSGEYNDFFEKGTYVCKQCGAPLYRSEDKFKSGCGWPSFDDEIKGAVKRIPDADGRRTEIV   81 (119)
T ss_pred             CcCCHHHHHHHHhcCCCCCCCCCCcCcCCCeEEEecCCCCccccccccccCCCCCcccCcccccceEEEecCCCcEEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCC
Q 032503           97 CAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD  134 (139)
Q Consensus        97 C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~  134 (139)
                      |++||+||||||+ ||+|+|||+|||||||||+|+|+.
T Consensus        82 C~~C~~HLGHVF~-d~gp~ptg~RyCINS~sL~F~p~~  118 (119)
T PRK05508         82 CANCGGHLGHVFE-GEGFTPKNTRHCVNSISLKFVPDK  118 (119)
T ss_pred             eCCCCCccCcccC-CCCCCCCCCEEeecceeEEeecCC
Confidence            9999999999999 445789999999999999999964

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.6e-69  Score=410.27  Aligned_cols=136  Identities=70%  Similarity=1.335  Sum_probs=130.1

Q ss_pred             CCCCCCCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCccc-C
Q 032503            1 MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-P   79 (139)
Q Consensus         1 ~~~~~~~~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i-~   79 (139)
                      |+.+..+++++++|||++|||+||+|||++|||+||+|+|++++++|+|+|++|++|||+|.+|||||||||||++.| +
T Consensus         7 ~~~~~~~v~k~~~EWr~~LsPeQ~~v~RekgTE~p~tGey~~~~e~GvY~C~~C~~pLykS~tKfdsgcGWPAF~e~i~~   86 (146)
T KOG0856|consen    7 VAPKTGSVQKNDEEWRKVLSPEQFRVLREKGTERPGTGEYTKHFEEGVYVCAGCGTPLYKSTTKFDSGCGWPAFFEAIGP   86 (146)
T ss_pred             ccCCCcccccCHHHHHhhcCHHHhhhhHhhcccCCCCcccccccCCceEEEeecCCccccccccccCCCCCchhhhccCC
Confidence            456677899999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCeEEccCCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCCC
Q 032503           80 GAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAP  136 (139)
Q Consensus        80 ~~v~~~~D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~~  136 (139)
                      ++|++++|.|  |.|+||+|++||+||||||.|||+..||++|||||||||+|.|++.+
T Consensus        87 gaI~r~~d~s~~~~R~Ev~Ca~C~~HLGHVF~~eG~~~Pt~~R~CiNS~sL~F~~~~~s  145 (146)
T KOG0856|consen   87 GAITRTPDNSRGGRRTEVSCATCGGHLGHVFKGEGPKTPTDERHCINSVSLKFVPADSS  145 (146)
T ss_pred             CceeeccccCCCCcceEEEEeecCCceeeeecCCCCCCCCCceeEeeeeeeeeccCCCC
Confidence            9999999988  89999999999999999999999666999999999999999998765

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=100.00  E-value=6.8e-62  Score=406.91  Aligned_cols=122  Identities=51%  Similarity=1.051  Sum_probs=116.1

Q ss_pred             HHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCCCeEEccCCCcce
Q 032503           13 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRR   92 (139)
Q Consensus        13 ~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~~~D~sm~R   92 (139)
                      +.||++|||+||+|||++||||||+|+||+++++|+|+|++||+|||+|++||+||||||||++||+++|+++.|.++.|
T Consensus         1 ~~~~~~Lt~~~y~v~r~~gTE~pf~g~~~~~~~~G~y~c~~c~~~LF~s~~Kf~sg~GWPsF~~~~~~~~~~~~d~~~~R   80 (283)
T PRK05550          1 MDKMKSLTPFEYRVIEDKGTERPFSGEYYDHDEKGVYLCRRCGAPLFRSEDKFNSGCGWPSFDDEIPGAVKRLPDADGRR   80 (283)
T ss_pred             ChhhhhCCHHHHHHHHhcCCCCCCCCcCcCCCCCcEEEcCCCCchhcCChhhccCCCCCcCcCcccCCccEEEEcCCCce
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999988888559


Q ss_pred             eEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCC
Q 032503           93 TEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDA  135 (139)
Q Consensus        93 tEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~  135 (139)
                      |||+|++||+||||||+||| |+|||+||||||+||+|+|.++
T Consensus        81 ~Ev~c~~c~~HLGHvF~ddg-p~ptg~RyCiNs~sL~f~p~~~  122 (283)
T PRK05550         81 TEIVCANCGAHLGHVFEGEG-LTPKNTRHCVNSASLDFVPAEE  122 (283)
T ss_pred             EEEEecCCCCccCcccCCCC-CCCCCccccccccccccCcccc
Confidence            99999999999999999565 7899999999999999999865

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=100.00  E-value=6.3e-61  Score=427.02  Aligned_cols=127  Identities=35%  Similarity=0.654  Sum_probs=121.0

Q ss_pred             CCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEcc
Q 032503            8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSP   86 (139)
Q Consensus         8 ~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~   86 (139)
                      ..++++|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|.+||+||||||||++||+ ++|.++.
T Consensus       378 ~~~~~~~~~~~Lt~~~y~v~~~~gtE~~f~~~~~~~~~~G~y~c~~c~~pLf~s~~Kf~sg~GWPsF~~~i~~~~v~~~~  457 (521)
T PRK14018        378 KKPSDAELKRTLTEEQYQITQNAATERAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKVVTEHD  457 (521)
T ss_pred             cCCChHHHhccCCHHHHHHHHhcCCCCCCCCCCcCCCCCEEEEecCCCCccccCcccccCCCCCcccCcccCcCceEEee
Confidence            346999999999999999999999999999999999999999999999999999999999999999999996 5899999


Q ss_pred             CCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCC
Q 032503           87 DPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDA  135 (139)
Q Consensus        87 D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~  135 (139)
                      |.|  |.||||+|++||+||||||+ |||++|||+||||||+||+|+|+++
T Consensus       458 d~s~g~~R~Ev~c~~c~~HLGHvf~-dgp~~~~g~RyCiNs~~l~f~~~~~  507 (521)
T PRK14018        458 DFSYNMRRTEVRSRAADSHLGHVFP-DGPRDKGGLRYCINGASLKFIPLEQ  507 (521)
T ss_pred             ccCCCceEEEEEECCCCCcCCcccC-CCCCCCCCCEeeeceeEEEeecchh
Confidence            998  99999999999999999998 8955679999999999999999864

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=93.61  E-value=0.037  Score=38.89  Aligned_cols=78  Identities=18%  Similarity=0.418  Sum_probs=45.8

Q ss_pred             EEEeccCCcccccCCcccc-CCCCCccCCc-ccCCCeEEccCCC---c------ceeEEEecCCCCCcccccCCCCCCCC
Q 032503           48 FYNCAGCGTALYKSVTKFD-SGCGWPAFYE-GLPGAINRSPDPD---G------RRTEITCAACGGHMGHVFKGEGFKTP  116 (139)
Q Consensus        48 ~Y~C~~Cg~pLF~S~~Kf~-Sg~GWPSF~~-~i~~~v~~~~D~s---m------~RtEv~C~~Cg~HLGHVF~~DG~p~p  116 (139)
                      +|.|+.|.++|=+|..-.. .|..=++|-- -+...+.  .|..   +      .-..+.|++|+.+||-.+. .- |+.
T Consensus         2 vf~C~~C~t~l~ds~~lvs~~g~~~~a~l~~~v~~~~~--~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~-~a-~~~   77 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVSFHGREGKAYLFNNVSNGVP--VDRELMTGETGGDHTVRDLFCSGCNTILGWKYE-SA-PEE   77 (96)
T ss_pred             EEECCCCCCCcCCHHHheecCCCCccEEEEeeeeeccc--ccceEEEeeCCCCEEEEEeEcccCChhHCcEEE-Ec-CHh
Confidence            7999999999987776665 4432233321 2211111  1111   1      2457999999999999987 32 221


Q ss_pred             ---CCceeeeccceee
Q 032503          117 ---TDERHCVNSVSIK  129 (139)
Q Consensus       117 ---tg~RyCINs~sL~  129 (139)
                         .--+|++.-++|.
T Consensus        78 ~~~k~g~file~~~i~   93 (96)
T PF03226_consen   78 QKYKEGKFILEKASIS   93 (96)
T ss_pred             HhhhCCEEEEEhhHEE
Confidence               3345666555543

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2k8d_A	151	Solution Structure Of A Zinc-Binding Methionine Sul		4e-29
3cez_A	164	Crystal Structure Of Methionine-R-Sulfoxide Reducta		4e-21
3hcj_A	154	Structure Of Msrb From Xanthomonas Campestris (Oxid		6e-19
2l1u_A	143	Structure-Functional Analysis Of Mammalian Msrb2 Pr		7e-19
3hci_A	154	Structure Of Msrb From Xanthomonas Campestris (Comp		6e-18
1l1d_A	152	Crystal Structure Of The C-Terminal Methionine Sulf		9e-17
3hcg_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		1e-16
3hch_A	146	Structure Of The C-Terminal Domain (Msrb) Of Neisse		9e-15
3e0o_A	144	Crystal Structure Of Msrb Length = 144		9e-14
3e0m_A	313	Crystal Structure Of Fusion Protein Of Msra And Msr		9e-14
2kzn_A	151	Solution Nmr Structure Of Peptide Methionine Sulfox		1e-13
3mao_A	105	Crystal Structure Of Human Methionine-R-Sulfoxide R		3e-09
2kv1_A	124	Insights Into Function, Catalytic Mechanism And Fol		8e-09

>pdb|2K8D|A Chain A, Solution Structure Of A Zinc-Binding Methionine Sulfoxide Reductase Length = 151

Iteration: 1
 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 83/133 (62%), Gaps = 5/133 (3%)
Query: 5   ADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTK 64
            + ++ +++EWR IL PE FR+ R+ GTEP  TG+Y+ L+ DG Y C  CGT L+ S TK
Sbjct: 18  VERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETK 77
Query: 65  FDSGCGWPAFYEGLPG---AINRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERH 121
           FDSG GWP+FY+ +      +         R E+ CA C  H+GHVF  +    PT +R+
Sbjct: 78  FDSGTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTGKRY 135
Query: 122 CVNSVSIKFIPGD 134
           C+NS ++KFIP D
Sbjct: 136 CMNSAALKFIPRD 148

>pdb|3CEZ|A Chain A, Crystal Structure Of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei Length = 164

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 10  KTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGC 69
           K + E R  L+P Q+ + +   TEP  TGEY      G Y+C  CGTAL++S  K+ SGC
Sbjct: 35  KDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGC 94
Query: 70  GWPAFYEGLPG-AINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSV 126
           GWP++++ + G  I+   D      R E+ C  CG H+GHVF+ +G +  T  R+C+NS 
Sbjct: 95  GWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGLRYCINSA 153
Query: 127 SIKF 130
           ++ F
Sbjct: 154 ALNF 157

>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized Form) Length = 154

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 19  LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL 78
           LS E+ R+L   GTE    G +     DG Y C  CG  L++S  KFDSG GWP+F+   
Sbjct: 21  LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 79  -PGAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 130
            P  +    D      RTEI CA C  H+GHVF       PT ERHC+NSVS+ F
Sbjct: 81  DPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDG--PPPTGERHCLNSVSLAF 133

>pdb|2L1U|A Chain A, Structure-Functional Analysis Of Mammalian Msrb2 Protein Length = 143

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 14  EWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPA 73
           +W+  L+PEQF + R+KGTE   +G Y      G Y+C  C + L+ S  K+ SG GWP+
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 74  FYEGL---------PGAINRSPDPDG-RRTEITCAACGGHMGHVFKGEGFKTPTDERHCV 123
           F E            G + R     G  R E+ C  C  H+GHVF  +G K PT +R C+
Sbjct: 63  FSEAYGSKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFP-DGPK-PTGQRFCI 120
Query: 124 NSVSIKFIPGDAPAS 138
           NSV++KF P    A+
Sbjct: 121 NSVALKFKPSKPAAA 135

>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Complex-Like Form) Length = 154

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 19  LSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL 78
           LS E+ R+L   GTE    G +     DG Y C  CG  L++S  KFDSG GWP+F+   
Sbjct: 21  LSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPY 80
Query: 79  -PGAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKF 130
            P  +    D      RTEI CA C  H+GHVF       PT ERH +NSVS+ F
Sbjct: 81  DPAHVREIRDTSYGMVRTEIVCARCDSHLGHVFPDG--PPPTGERHSLNSVSLAF 133

>pdb|1L1D|A Chain A, Crystal Structure Of The C-Terminal Methionine Sulfoxide Reductase Domain (Msrb) Of N. Gonorrhoeae Pilb Length = 152

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 4   AADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVT 63
           AA   + ++ E +  L+ EQ+++ +   TE   + EY+ L+  G Y     G  L+ S  
Sbjct: 5   AATYKKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSAD 64
Query: 64  KFDSGCGWPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHMGHVFKGEGFKTPTDER 120
           K+DSGCGWP+F   +        D    + RRTE+   A   H+GHVF  +G +     R
Sbjct: 65  KYDSGCGWPSFTRPIDAKSVTEHDDFSFNXRRTEVRSRAADSHLGHVFP-DGPRDKGGLR 123
Query: 121 HCVNSVSIKFIP 132
           +C+N  S+KFIP
Sbjct: 124 YCINGASLKFIP 135

>pdb|3HCG|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 146

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 11  TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
           ++ E +  L+ EQ+++ +   TE   + EY+ L+  G Y     G  L+ S  K+DSGCG
Sbjct: 6   SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCG 65
Query: 71  WPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVS 127
           WP+F   +        D    + RRTE+   A   H+GHVF  +G +     R+C+N  S
Sbjct: 66  WPSFTRPIDAKSVTEHDDFSYNXRRTEVRSHAADSHLGHVFP-DGPRDKGGLRYCINGAS 124
Query: 128 IKFIP 132
           +KFIP
Sbjct: 125 LKFIP 129

>pdb|3HCH|A Chain A, Structure Of The C-Terminal Domain (Msrb) Of Neisseria Meningitidis Pilb (Complex With Substrate) Length = 146

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 11  TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
           ++ E +  L+ EQ+++ +   TE   + EY+ L+  G Y     G  L+ S  K+DSG G
Sbjct: 6   SDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGSG 65
Query: 71  WPAFYEGLPGAINRSPDP---DGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVS 127
           WP+F   +        D    + RRTE+   A   H+GHVF  +G +     R+ +N  S
Sbjct: 66  WPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFP-DGPRDKGGLRYSINGAS 124
Query: 128 IKFIP 132
           +KFIP
Sbjct: 125 LKFIP 129

>pdb|3E0O|A Chain A, Crystal Structure Of Msrb Length = 144

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 11  TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
            +EE    L+  Q+ + +  GTEP    EY     +G Y     G  L+ S  KFDS CG
Sbjct: 5   NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 64
Query: 71  WPAFYEGLPGAINRSPDPDG--RRTEITCAACGGHMGHVFK-GEGFKTPTDERHCVNSVS 127
           WP+F + +   +    D      RTE+       H+GHVF  G G   P   R+C+NS +
Sbjct: 65  WPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDGPG---PNGLRYCINSAA 121
Query: 128 IKFIP 132
           ++F+P
Sbjct: 122 LRFVP 126

>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 1   MTAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYK 60
           +  AA+  + ++E  +A LS E +R+ ++  TE   T  Y++ + +G Y     G  L+ 
Sbjct: 162 LIDAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFF 221
Query: 61  SVTKFDSGCGWPAFYEGLPGAI---NRSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPT 117
           +  KF SGCGWP+F   L   +    +       R E+   +   H+GHVF  +G +   
Sbjct: 222 AKDKFASGCGWPSFSRPLSKELIHYYKDLSHGMERIEVRSRSGSAHLGHVFT-DGPRELG 280
Query: 118 DERHCVNSVSIKFIPGD 134
             R+C+NS S++F+  D
Sbjct: 281 GLRYCINSASLRFVAKD 297

>pdb|2KZN|A Chain A, Solution Nmr Structure Of Peptide Methionine Sulfoxide Reductase Msrb From Bacillus Subtilis, Northeast Structural Genomics Consortium Target Sr10 Length = 151

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 11  TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCG 70
            +EE    L+  Q+ + +  GTEP    EY     +G Y     G  L+ S  KFDS CG
Sbjct: 4   NKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCG 63
Query: 71  WPAFYEGLPGAINRSPDPDG--RRTEITCAACGGHMGHVFK-GEGFKTPTDERHCVNSVS 127
           WP+F + +   +    D      RTE+       H+GHVF  G G   P   R+C+NS +
Sbjct: 64  WPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDGPG---PNGLRYCINSAA 120
Query: 128 IKFIP 132
           ++F+P
Sbjct: 121 LRFVP 125

>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide Reductase B1 (Msrb1) Length = 105

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 40  YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDPDGRRTE---IT 96
           +   +  G Y CA CG  L+ S +K+     WPAF E +  A + +  P+  R+E   ++
Sbjct: 5   FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETI-HADSVAKRPEHNRSEALKVS 63
Query: 97  CAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIP 132
           C  CG  +GH F  +G K P   R  + S S+KF+P
Sbjct: 64  CGKCGNGLGHEFLNDGPK-PGQSRFSIFSSSLKFVP 98

>pdb|2KV1|A Chain A, Insights Into Function, Catalytic Mechanism And Fold Evolution Of Mouse Selenoprotein Methionine Sulfoxide Reductase B1 Through Structural Analysis Length = 124

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 40  YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL-PGAINRSPDPDG-RRTEITC 97
           +   +  G Y CA C   L+ S +K+     WPAF E + P ++ + P+ +     +++C
Sbjct: 12  FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSC 71
Query: 98  AACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIP 132
             CG  +GH F  +G K     R C+ S S+KF+P
Sbjct: 72  GKCGNGLGHEFLNDGPKR-GQSRFCIFSSSLKFVP 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	4e-64
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	2e-61
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	4e-58
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	5e-58
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	2e-55
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	6e-55
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	2e-45
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	2e-44
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	1e-35

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} Length = 151

 Score =  191 bits (487), Expect = 4e-64
 Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 2   TAAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKS 61
               + ++ +++EWR IL PE FR+ R+ GTEP  TG+Y+ L+ DG Y C  CGT L+ S
Sbjct: 15  VEMVERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDS 74

Query: 62  VTKFDSGCGWPAFYEGL-PGAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTD 118
            TKFDSG GWP+FY+ +    I    D      R E+ CA C  H+GHVF  +    PT 
Sbjct: 75  ETKFDSGTGWPSFYDVVSEHNIKLREDRSLGMVRCEVLCARCDAHLGHVF--DDGPRPTG 132

Query: 119 ERHCVNSVSIKFIPGDAPA 137
           +R+C+NS ++KFIP D   
Sbjct: 133 KRYCMNSAALKFIPRDQIG 151

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* Length = 154

 Score =  184 bits (470), Expect = 2e-61
 Identities = 53/135 (39%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 8   VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDS 67
                +   A LS E+ R+L   GTE    G +     DG Y C  CG  L++S  KFDS
Sbjct: 10  SPAQRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDS 69

Query: 68  GCGWPAFYEGL-PGAINRSPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVN 124
           G GWP+F+    P  +    D      RTEI CA C  H+GHVF       PT ERHC+N
Sbjct: 70  GTGWPSFFAPYDPAHVREIRDTSYGMIRTEIVCARCDSHLGHVFPDGP--PPTGERHCLN 127

Query: 125 SVSIKFIPGDAPASS 139
           SVS+ F     P  +
Sbjct: 128 SVSLAFTEDGQPLPN 142

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus} Length = 143

 Score =  175 bits (447), Expect = 4e-58
 Identities = 51/137 (37%), Positives = 69/137 (50%), Gaps = 14/137 (10%)

Query: 14  EWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPA 73
           +W+  L+PEQF + R+KGTE   +G Y      G Y+C  C + L+ S  K+ SG GWP+
Sbjct: 3   DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62

Query: 74  FYEGLPG--------AINRSPDPD--GRRTEITCAACGGHMGHVFK-GEGFKTPTDERHC 122
           F E             I R  D      R E+ C  C  H+GHVF  G     PT +R C
Sbjct: 63  FSEAYGSKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGP---KPTGQRFC 119

Query: 123 VNSVSIKFIPGDAPASS 139
           +NSV++KF P    A+ 
Sbjct: 120 INSVALKFKPSKPAAAL 136

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A Length = 164

 Score =  176 bits (448), Expect = 5e-58
 Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 3   AAADSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSV 62
                  K + E R  L+P Q+ + +   TEP  TGEY      G Y+C  CGTAL++S 
Sbjct: 28  DPRYPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESG 87

Query: 63  TKFDSGCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDE 119
            K+ SGCGWP++++ +    I+   D      R E+ C  CG H+GHVF+ +G +  T  
Sbjct: 88  AKYHSGCGWPSYFKPIDGEVIDEKMDYTHGMTRVEVRCNQCGAHLGHVFE-DGPRDKTGL 146

Query: 120 RHCVNSVSIKFIPGD 134
           R+C+NS ++ F    
Sbjct: 147 RYCINSAALNFEAKP 161

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} PDB: 1xm0_A 2kzn_A Length = 144

 Score =  169 bits (430), Expect = 2e-55
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 8   VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDS 67
           +   +EE    L+  Q+ + +  GTEP    EY     +G Y     G  L+ S  KFDS
Sbjct: 2   MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDS 61

Query: 68  GCGWPAFYEGLPGAINRSPDPDG--RRTEITCAACGGHMGHVFK-GEGFKTPTDERHCVN 124
            CGWP+F + +   +    D      RTE+       H+GHVF  G     P   R+C+N
Sbjct: 62  QCGWPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDGP---GPNGLRYCIN 118

Query: 125 SVSIKFIPGD 134
           S +++F+P  
Sbjct: 119 SAALRFVPKH 128

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A* 1l1d_A Length = 146

 Score =  168 bits (427), Expect = 6e-55
 Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 4/130 (3%)

Query: 8   VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDS 67
            + ++ E +  L+ EQ+++ +   TE   + EY+ L+  G Y     G  L+ S  K+DS
Sbjct: 3   KKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDS 62

Query: 68  GCGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVN 124
           GCGWP+F   +   ++    D     RRTE+   A   H+GHVF  +G +     R+C+N
Sbjct: 63  GCGWPSFTRPIDAKSVTEHDDFSYNMRRTEVRSHAADSHLGHVFP-DGPRDKGGLRYCIN 121

Query: 125 SVSIKFIPGD 134
             S+KFIP +
Sbjct: 122 GASLKFIPLE 131

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens} Length = 105

 Score =  142 bits (361), Expect = 2e-45
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 37  TGE-YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPDPD-GRRT 93
           + E +   +  G Y CA CG  L+ S +K+     WPAF E +   ++ + P+ +     
Sbjct: 1   SMEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEAL 60

Query: 94  EITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAPASS 139
           +++C  CG  +GH F  +G K P   R  + S S+KF+P     S+
Sbjct: 61  KVSCGKCGNGLGHEFLNDGPK-PGQSRFSIFSSSLKFVPKGKETSA 105

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313

 Score =  124 bits (312), Expect = 1e-35
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 9   QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSG 68
           + ++E  +A LS E +R+ ++  TE   T  Y++ + +G Y     G  L+ +  KF SG
Sbjct: 170 KPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASG 229

Query: 69  CGWPAFYEGL-PGAINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNS 125
           CGWP+F   L    I+   D      R E+   +   H+GHVF   G +     R+C+NS
Sbjct: 230 CGWPSFSRPLSKELIHYYKDLSHGMERIEVRSRSGSAHLGHVFTD-GPRELGGLRYCINS 288

Query: 126 VSIKFIPGD 134
            S++F+  D
Sbjct: 289 ASLRFVAKD 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	100.0
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	100.0
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	100.0
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	100.0
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	100.0
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	100.0
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	100.0
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	100.0
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	100.0
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	100.0
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	84.08
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	82.21

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=100.00  E-value=5.1e-73  Score=434.36  Aligned_cols=125  Identities=33%  Similarity=0.620  Sum_probs=121.1

Q ss_pred             CCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCCCeEEccC
Q 032503            8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPD   87 (139)
Q Consensus         8 ~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~~~D   87 (139)
                      +.++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+++|+++.|
T Consensus         2 ~~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D   81 (144)
T 3e0o_A            2 MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLD   81 (144)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEE
T ss_pred             CCCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeec
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             CC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCC
Q 032503           88 PD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD  134 (139)
Q Consensus        88 ~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~  134 (139)
                      .+  |+||||+|++||+||||||+ || |+|||+|||||||||+|+|++
T Consensus        82 ~s~gm~RtEV~C~~Cg~HLGHVF~-DG-P~ptg~RyCiNS~sL~F~p~~  128 (144)
T 3e0o_A           82 TSHGMIRTEVRSRTADSHLGHVFN-DG-PGPNGLRYCINSAALRFVPKH  128 (144)
T ss_dssp             CCTTSCEEEEEETTTCCEEEEEES-CC-SSTTCCEEEECGGGEEEEEHH
T ss_pred             CCCCceEEEEEcCCCCCccCCccC-CC-CCCCCCEeeeceeeEeeeech
Confidence            98  99999999999999999998 88 689999999999999999975

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=2.1e-72  Score=433.75  Aligned_cols=128  Identities=48%  Similarity=0.983  Sum_probs=122.9

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCC-CeEE
Q 032503            6 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINR   84 (139)
Q Consensus         6 ~~~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~-~v~~   84 (139)
                      .++.++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||++ +|++
T Consensus        19 ~~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~   98 (151)
T 2k8d_A           19 ERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKL   98 (151)
T ss_dssp             ECSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEEC
T ss_pred             cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEE
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999965 9999


Q ss_pred             ccCCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCC
Q 032503           85 SPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDA  135 (139)
Q Consensus        85 ~~D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~  135 (139)
                      ++|.+  |.||||+|++||+||||||+ || |+|||+|||||||||+|+|.++
T Consensus        99 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~-DG-P~ptg~RyCINS~sL~F~p~~~  149 (151)
T 2k8d_A           99 REDRSLGMVRCEVLCARCDAHLGHVFD-DG-PRPTGKRYCMNSAALKFIPRDQ  149 (151)
T ss_dssp             CCCBTTSSCEEEEEETTEEEEEEEEEE-CS-SSSSCEEEEECSTTEEEECSSS
T ss_pred             eeCCCCCceEEEEEeCCCCCcCCcccC-CC-CCCCCCEEeeceeeecccchHH
Confidence            99998  99999999999999999998 88 7899999999999999999754

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=100.00  E-value=3.8e-72  Score=430.46  Aligned_cols=126  Identities=34%  Similarity=0.655  Sum_probs=120.3

Q ss_pred             CCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEcc
Q 032503            8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSP   86 (139)
Q Consensus         8 ~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~   86 (139)
                      ..++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.
T Consensus         3 ~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~   82 (146)
T 3hcg_A            3 KKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHD   82 (146)
T ss_dssp             CCCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEEE
T ss_pred             CCCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEee
Confidence            457999999999999999999999999999999999999999999999999999999999999999999995 5999999


Q ss_pred             CCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCC
Q 032503           87 DPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD  134 (139)
Q Consensus        87 D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~  134 (139)
                      |.+  |+||||+|++||+||||||+ |||++|||+|||||||||+|+|++
T Consensus        83 D~s~gm~RtEV~C~~Cg~HLGHVF~-DGP~~~tg~RyCiNS~sL~F~p~~  131 (146)
T 3hcg_A           83 DFSYNMRRTEVRSHAADSHLGHVFP-DGPRDKGGLRYCINGASLKFIPLE  131 (146)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEEES-CSCGGGTSCEEEECGGGEEEEEHH
T ss_pred             cCCCCcEEEEEEeCCCCCccCceeC-CCCCCCCCCEEeeeeEEEEeeehH
Confidence            998  99999999999999999998 895557999999999999999974

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=100.00  E-value=2e-71  Score=432.88  Aligned_cols=128  Identities=38%  Similarity=0.793  Sum_probs=122.4

Q ss_pred             CCCCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCC-CeEE
Q 032503            6 DSVQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINR   84 (139)
Q Consensus         6 ~~~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~-~v~~   84 (139)
                      .++.++++|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||++ +|++
T Consensus        31 ~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V~~  110 (164)
T 3cxk_A           31 YPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDE  110 (164)
T ss_dssp             CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSEEE
T ss_pred             cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCceEE
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999976 8999


Q ss_pred             ccCCC--cceeEEEecCCCCCcccccCCCCCC-CCCCceeeeccceeeeeeCCC
Q 032503           85 SPDPD--GRRTEITCAACGGHMGHVFKGEGFK-TPTDERHCVNSVSIKFIPGDA  135 (139)
Q Consensus        85 ~~D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p-~ptg~RyCINs~sL~F~p~~~  135 (139)
                      ++|.+  |.||||+|++||+||||||+ || | +|||+|||||||||+|+|+++
T Consensus       111 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~-DG-P~~ptg~RyCINS~sL~F~p~~~  162 (164)
T 3cxk_A          111 KMDYTHGMTRVEVRCNQCGAHLGHVFE-DG-PRDKTGLRYCINSAALNFEAKPE  162 (164)
T ss_dssp             EEECGGGCCEEEEEETTTCCEEEEEES-CS-CTTTTSCEEEECGGGEEEEECC-
T ss_pred             eECCCCCcEEEEEEeCCCCCccCcccC-CC-CCCCCCCEEeeceeeEeeecccc
Confidence            99998  99999999999999999998 88 6 899999999999999999754

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=100.00  E-value=2e-70  Score=423.82  Aligned_cols=124  Identities=43%  Similarity=0.776  Sum_probs=118.4

Q ss_pred             CHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEccCCC
Q 032503           11 TEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSPDPD   89 (139)
Q Consensus        11 ~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~D~s   89 (139)
                      ..+|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.|.+
T Consensus        13 ~~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s   92 (154)
T 3hcj_A           13 QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTS   92 (154)
T ss_dssp             HHHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTT
T ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCC
Confidence            356899999999999999999999999999999999999999999999999999999999999999996 5999999998


Q ss_pred             --cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCCC
Q 032503           90 --GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAP  136 (139)
Q Consensus        90 --m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~~  136 (139)
                        |.||||+|++||+||||||+ || |+|||+|||||||||+|+|+++.
T Consensus        93 ~gm~RtEV~C~~Cg~HLGHVF~-DG-P~ptg~RyCiNS~sL~F~p~~~~  139 (154)
T 3hcj_A           93 YGMIRTEIVCARCDSHLGHVFP-DG-PPPTGERHCLNSVSLAFTEDGQP  139 (154)
T ss_dssp             TTTSCEEEEETTTCCEEEEEES-CS-CTTTTCEEEECGGGEEEEETTSB
T ss_pred             CCceEEEEEeCCCCCccCCccC-CC-CCCCCCEeeeceeeEEeeeCCCC
Confidence              99999999999999999998 88 78999999999999999998643

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=100.00  E-value=3.5e-71  Score=423.88  Aligned_cols=122  Identities=41%  Similarity=0.835  Sum_probs=117.8

Q ss_pred             HHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCccc--------CCCeEE
Q 032503           13 EEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGL--------PGAINR   84 (139)
Q Consensus        13 ~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i--------~~~v~~   84 (139)
                      +|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++|||||||||||++||        +++|++
T Consensus         2 ~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~~   81 (143)
T 2l1u_A            2 ADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGILR   81 (143)
T ss_dssp             CCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEEE
T ss_pred             hHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999        679999


Q ss_pred             ccCCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCCC
Q 032503           85 SPDPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAP  136 (139)
Q Consensus        85 ~~D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~~  136 (139)
                      +.|.|  |.||||+|++||+||||||+ || |+|||+|||||||||+|+|+++-
T Consensus        82 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~-DG-P~ptg~RyCINS~sL~F~p~~~~  133 (143)
T 2l1u_A           82 RLDTSLGCPRMEVVCKQCEAHLGHVFP-DG-PKPTGQRFCINSVALKFKPSKPA  133 (143)
T ss_dssp             EEECTTSSCEEEEEESSSCCCCEEEEC-CS-SCGGGCEEEECCTTEEEEESSBT
T ss_pred             eecccCCceEEEEEECCCCCcCCcccC-CC-CCCCCCEEEeeeeEEeccchhhh
Confidence            99998  99999999999999999998 88 78999999999999999998653

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=100.00  E-value=3.1e-65  Score=430.58  Aligned_cols=126  Identities=33%  Similarity=0.602  Sum_probs=120.5

Q ss_pred             CCCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEcc
Q 032503            8 VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSP   86 (139)
Q Consensus         8 ~~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~   86 (139)
                      ..++++|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|++++
T Consensus       169 ~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~  248 (313)
T 3e0m_A          169 EKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHYYK  248 (313)
T ss_dssp             CCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGGEEEEE
T ss_pred             ccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCceEEee
Confidence            457999999999999999999999999999999999999999999999999999999999999999999995 6999999


Q ss_pred             CCC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCC
Q 032503           87 DPD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD  134 (139)
Q Consensus        87 D~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~  134 (139)
                      |.|  |.||||+|++||+||||||+ |||.+|||+|||||||||+|+|++
T Consensus       249 D~s~gm~RtEv~c~~c~~HLGHVF~-DGp~~ptg~RyCiNs~sL~F~p~~  297 (313)
T 3e0m_A          249 DLSHGMERIEVRSRSGSAHLGHVFT-DGPRELGGLRYCINSASLRFVAKD  297 (313)
T ss_dssp             ECCTTCCEEEEEESSSCCEEEEEES-CSCTTTTSCEEEECGGGEEEEEHH
T ss_pred             cCCCCcEEEEEECCCCCCccCcccC-CCCCCCCCCEEeeceeeEeeeccc
Confidence            998  99999999999999999998 884379999999999999999974

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=100.00  E-value=4.7e-57  Score=338.78  Aligned_cols=103  Identities=30%  Similarity=0.705  Sum_probs=95.2

Q ss_pred             CCCccC-CCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEccCCC-cceeEEEecCCCCCcccccCC
Q 032503           34 PRGTGE-YNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSPDPD-GRRTEITCAACGGHMGHVFKG  110 (139)
Q Consensus        34 ~pfsg~-y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~D~s-m~RtEv~C~~Cg~HLGHVF~~  110 (139)
                      .+|+|+ |||++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.|.+ |.||||+|++||+||||||.+
T Consensus         5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~~~~r~Ev~C~~Cg~HLGHVF~~   84 (124)
T 2kv1_A            5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRPEALKVSCGKCGNGLGHEFLN   84 (124)
T ss_dssp             CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSSSTTCEEEECTTTTCCCEEECTT
T ss_pred             cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccCCceEEEEEEecCCCccCCccCC
Confidence            379999 6788899999999999999999999999999999999995 5888888988 999999999999999999944


Q ss_pred             CCCCCCCCceeeeccceeeeeeCCCCC
Q 032503          111 EGFKTPTDERHCVNSVSIKFIPGDAPA  137 (139)
Q Consensus       111 DG~p~ptg~RyCINs~sL~F~p~~~~~  137 (139)
                      || |+|||+|||||||||+|+|+++.+
T Consensus        85 DG-P~ptg~RyCINS~sL~F~p~~~~~  110 (124)
T 2kv1_A           85 DG-PKRGQSRFCIFSSSLKFVPKGKEA  110 (124)
T ss_dssp             SC-TTTTCSCEECCTTTEEEEECSSSC
T ss_pred             CC-CCCCCCEEeecceeeEeEECcccc
Confidence            88 789999999999999999987554

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=100.00  E-value=4.9e-57  Score=330.58  Aligned_cols=99  Identities=30%  Similarity=0.737  Sum_probs=92.5

Q ss_pred             CCCccccceEEEeccCCcccccCCccccCCCCCccCCcccC-CCeEEccCCC-cceeEEEecCCCCCcccccCCCCCCCC
Q 032503           39 EYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLP-GAINRSPDPD-GRRTEITCAACGGHMGHVFKGEGFKTP  116 (139)
Q Consensus        39 ~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~-~~v~~~~D~s-m~RtEv~C~~Cg~HLGHVF~~DG~p~p  116 (139)
                      +||+++++|+|+|++||+|||+|++|||||||||||++||+ ++|+++.|.+ |.||||+|++||+||||||.+|| |+|
T Consensus         4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~~~~RtEV~C~~C~~HLGHVF~~DG-P~p   82 (105)
T 3mao_A            4 VFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDG-PKP   82 (105)
T ss_dssp             CCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTTSTTEEEEEETTTCCEEEEEETTCS-SST
T ss_pred             cccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCCCCCEEEEEeCCCCCccCcccCCCC-cCC
Confidence            69999999999999999999999999999999999999996 5899999975 99999999999999999995488 789


Q ss_pred             CCceeeeccceeeeeeCCCCCC
Q 032503          117 TDERHCVNSVSIKFIPGDAPAS  138 (139)
Q Consensus       117 tg~RyCINs~sL~F~p~~~~~~  138 (139)
                      ||+|||||||||+|+|+++.++
T Consensus        83 tg~RyCiNS~sL~F~p~~~~~~  104 (105)
T 3mao_A           83 GQSRFSIFSSSLKFVPKGKETS  104 (105)
T ss_dssp             TCCEEEECGGGEEEEETTCCCC
T ss_pred             CCCEEeeCeeeEEeeecccccc
Confidence            9999999999999999987654

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=84.08  E-value=1  Score=27.20  Aligned_cols=32  Identities=31%  Similarity=0.500  Sum_probs=25.4

Q ss_pred             cccceEEEeccCCcccccCCccccCCCCCccCCc
Q 032503           43 LYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYE   76 (139)
Q Consensus        43 ~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~   76 (139)
                      ..+.|.++|..||..+  .+.-.+.|.-|.+|..
T Consensus        19 d~~~gelvC~~CG~v~--~e~~id~~~ewr~f~~   50 (50)
T 1pft_A           19 DPERGEIVCAKCGYVI--EENIIDMGPEWRAFDA   50 (50)
T ss_dssp             ETTTTEEEESSSCCBC--CCCCCCCCSSSSCCCC
T ss_pred             cCCCCeEECcccCCcc--cccccccCCcccccCC
Confidence            3467899999999887  3455788889999963

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=82.21  E-value=0.97  Score=28.73  Aligned_cols=32  Identities=28%  Similarity=0.603  Sum_probs=26.9

Q ss_pred             cccceEEEeccCCcccccCCccccCCCCCccCCc
Q 032503           43 LYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYE   76 (139)
Q Consensus        43 ~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~   76 (139)
                      ..+.|.++|..||.-|  .+.-.|.|.-|.+|..
T Consensus        25 D~~~ge~vC~~CGlVl--~e~~iD~gpEWR~F~~   56 (58)
T 1dl6_A           25 DYRAGDMICPECGLVV--GDRVIDVGSEWRTFSN   56 (58)
T ss_dssp             CSSSCCEECTTTCCEE--CCSCCCCCCSCCCSCC
T ss_pred             eCCCCeEEeCCCCCEE--eccccccCCcccccCC
Confidence            3578999999999887  5567889999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1xm0a1	143	b.88.1.3 (A:1-143) Peptide methionine sulfoxide re	1e-42
d1l1da_	144	b.88.1.3 (A:) C-terminal MsrB domain of peptide me	3e-40

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]} Length = 143

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

 Score =  135 bits (342), Expect = 1e-42
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 8   VQKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDS 67
           +   +EE    L+  Q+ + +  GTEP    EY     +G Y     G  L+ S  KFDS
Sbjct: 1   MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDS 60

Query: 68  GCGWPAFYEGLPGAINRSPDPDG--RRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNS 125
            CGWP+F + +   +    D      RTE+       H+GHVF  +G   P   R+C+NS
Sbjct: 61  QCGWPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFN-DGP-GPNGLRYCINS 118

Query: 126 VSIKFIP 132
            +++F+P
Sbjct: 119 AALRFVP 125

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]} Length = 144

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

 Score =  129 bits (326), Expect = 3e-40
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 4/128 (3%)

Query: 10  KTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGC 69
            ++ E +  L+ EQ+++ +   TE   + EY+ L+  G Y     G  L+ S  K+DSGC
Sbjct: 4   PSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGC 63

Query: 70  GWPAFYEGLPGAIN---RSPDPDGRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSV 126
           GWP+F   +             + RRTE+   A   H+GHVF  +G +     R+C+N  
Sbjct: 64  GWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRAADSHLGHVFP-DGPRDKGGLRYCINGA 122

Query: 127 SIKFIPGD 134
           S+KFIP +
Sbjct: 123 SLKFIPLE 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	100.0
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	100.0

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.1e-70  Score=415.25  Aligned_cols=126  Identities=33%  Similarity=0.604  Sum_probs=121.4

Q ss_pred             CCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCCCeEEccCC
Q 032503            9 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPGAINRSPDP   88 (139)
Q Consensus         9 ~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~~v~~~~D~   88 (139)
                      .++++||+++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++||+||||||||++||+++|.+..|.
T Consensus         2 ~~~~~e~~~~Lt~~qy~V~r~~gTE~pFtg~y~~~~~~G~Y~C~~C~~pLF~S~~KfdSg~GWPSF~~~i~~~v~~~~D~   81 (143)
T d1xm0a1           2 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLDT   81 (143)
T ss_dssp             CCCHHHHHTTCCHHHHHHHHHCCCCCCCSCSSCSCCSSEEEEESSTTCEEEETTTCCCCCSSSCCEEESCCCSEEEECCC
T ss_pred             CCCHHHHHhhCCHHHHHHHHhcCCCCCCCCCCcCCCCCceEEeccccchhhhhhhhhccCCccceeecccccceEEEecC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999988888999


Q ss_pred             C--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCCCC
Q 032503           89 D--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGDAP  136 (139)
Q Consensus        89 s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~~~  136 (139)
                      +  |.||||+|++||+||||||+ || |.|||+||||||+||+|+|+++-
T Consensus        82 s~gm~R~Ev~C~~Cg~HLGHVF~-DG-p~ptg~RyCINs~sL~F~p~~~~  129 (143)
T d1xm0a1          82 SHGMIRTEVRSRTADSHLGHVFN-DG-PGPNGLRYCINSAALRFVPKHKL  129 (143)
T ss_dssp             CTTCCCCEEEESSCTTCCCEEEE-SC-SSSSCEEEECCGGGEEEEETTTS
T ss_pred             CCCccccceEecCCCCccCccCC-CC-CCCCCcEeeeeeeeEEEEehhhh
Confidence            9  99999999999999999998 88 78999999999999999998753

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=100.00  E-value=4e-69  Score=411.07  Aligned_cols=125  Identities=34%  Similarity=0.669  Sum_probs=118.3

Q ss_pred             CCCHHHHHhcCCHHHHHHhhhCCCCCCCccCCCccccceEEEeccCCcccccCCccccCCCCCccCCcccCC-CeEEccC
Q 032503            9 QKTEEEWRAILSPEQFRILRQKGTEPRGTGEYNKLYADGFYNCAGCGTALYKSVTKFDSGCGWPAFYEGLPG-AINRSPD   87 (139)
Q Consensus         9 ~~~~~ewr~~Ltp~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~Kf~Sg~GWPSF~~~i~~-~v~~~~D   87 (139)
                      ++|++|||++|||+||+|||++|||+||||+||+++++|+|+|++||+|||+|++||+||||||||+++|++ +|.++.|
T Consensus         3 k~s~~ewk~~Ls~~~y~Vlr~~GTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d   82 (144)
T d1l1da_           3 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDD   82 (144)
T ss_dssp             CCCHHHHTTTSCHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSTTSEEEEEE
T ss_pred             CCCHHHHHHhCCHHHHHHHHhcCCCCCCCcccccccccCceEeccccceeeehhhcccCCccceeeccccccccccceec
Confidence            579999999999999999999999999999999999999999999999999999999999999999999977 7788999


Q ss_pred             CC--cceeEEEecCCCCCcccccCCCCCCCCCCceeeeccceeeeeeCC
Q 032503           88 PD--GRRTEITCAACGGHMGHVFKGEGFKTPTDERHCVNSVSIKFIPGD  134 (139)
Q Consensus        88 ~s--m~RtEv~C~~Cg~HLGHVF~~DG~p~ptg~RyCINs~sL~F~p~~  134 (139)
                      .+  |.||||+|++||+||||||+ |||.+++|+||||||+||+|+|++
T Consensus        83 ~s~gm~R~Ev~C~~Cg~HLGHVF~-DGp~~~~~~RyCiNs~sL~F~p~~  130 (144)
T d1l1da_          83 FSFNMRRTEVRSRAADSHLGHVFP-DGPRDKGGLRYCINGASLKFIPLE  130 (144)
T ss_dssp             CCTTSCEEEEEETTTCCEEEEEES-CSCGGGTSCEEEECGGGEEEEEHH
T ss_pred             ccccccceeeEecCCCCccCcccC-CCCCCCCCCEeccceeeEEEEeHH
Confidence            88  99999999999999999998 883245799999999999999975