Citrus Sinensis ID: 032531

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPRGKTGVLLCSFT
Secondary Structure (PSIPRED)
cccEEEEEEHHHHHHHHHcHHccccccccEEEEEEEcccccccEEEEEcEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcHHHHHHHHHHHHccccccEEEEEEEEcccccccEEEEEEccHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccEcccccccEEEEEEEc
Coil and Loop (DISEMBL)
MGELKYELSQNAYIKLVLHARKHKTAAVNGVLlgrvspqndavVEIADsvplfhshlgllpnlEISLIMIEEHYsaqglgivgyfhanerfddlelDSIAKNIGNHICRYFPQCAVLLItksskpyprgktgvllcsft
Flexible Loop (DISEMBL)
mgelkyelSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKsskpyprgktgvllcsft
Low Complexity Region (SEG)
MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPRGKTGVLLCSFT
Disordered region (IsUnstruct)
*******LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPY**GKTGVLLC***
Disordered Region (DISOPRED)
****KYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSP**DAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSSKP**RGKTGVLLCSFT
Disordered Region (DISEMBL)
MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPRGKTGVLLCSFT
Disordered Region (DISPRO)
*GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPRGKTGVLLCSFT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPYPRGKTGVLLCSFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9FG71	208	ER membrane protein compl	yes	no	0.928	0.620	0.738	9e-51
Q5U1W7	206	ER membrane protein compl	yes	no	0.892	0.601	0.392	2e-16
Q9Y3B6	208	ER membrane protein compl	yes	no	0.892	0.596	0.392	2e-16
Q9DB76	206	ER membrane protein compl	yes	no	0.913	0.616	0.381	5e-16
Q9W1Y1	203	ER membrane protein compl	yes	no	0.827	0.566	0.389	8e-15
O70378	207	ER membrane protein compl	no	no	0.834	0.560	0.317	2e-12
Q5FVL2	207	ER membrane protein compl	no	no	0.834	0.560	0.317	2e-12
Q55FM0	192	ER membrane protein compl	yes	no	0.848	0.614	0.333	3e-12
O43402	210	ER membrane protein compl	no	no	0.834	0.552	0.301	6e-12
Q32KL5	210	ER membrane protein compl	no	no	0.834	0.552	0.293	1e-11

>sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1

 Score =  198 bits (503), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
           GELKYE+SQNAYIKLVLH+ +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP
Sbjct: 7   GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 66

Query: 62  NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI-T 120
            LEISLIMIEEHY AQGL IVGYFHANERFDD+EL  +AKNIG+HI RYFPQ  +LL+  
Sbjct: 67  PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126

Query: 121 KSSKPYPRGK 130
           K  +   +GK
Sbjct: 127 KKLEALSKGK 136

Arabidopsis thaliana (taxid: 3702)

>sp|Q5U1W7|EMC9_RAT ER membrane protein complex subunit 9 OS=Rattus norvegicus GN=Emc9 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 6/130 (4%)

Query: 1   MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
           MGE+  E+S  AY K+ LHA ++  AAVNG+LL   +   + +  + D VPLFHSHL L 
Sbjct: 1   MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLC-LTDCVPLFHSHLALS 57

Query: 61  PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
             LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP  AVL++ 
Sbjct: 58  VMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPN-AVLIML 116

Query: 121 KSSK--PYPR 128
            + K   +PR
Sbjct: 117 DNKKLVTWPR 126

Rattus norvegicus (taxid: 10116)

>sp|Q9Y3B6|EMC9_HUMAN ER membrane protein complex subunit 9 OS=Homo sapiens GN=EMC9 PE=1 SV=3

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 6/130 (4%)

Query: 1   MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
           MGE+  E+S  AY+K+ LHA ++  AAVNG+ L   +P++   + + D VPLFHSHL L 
Sbjct: 1   MGEV--EISALAYVKMCLHAARYPHAAVNGLFLAP-APRSGECLCLTDCVPLFHSHLALS 57

Query: 61  PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
             LE++L  ++   +  GL + GY+HAN   +D     +A  I   I  +FP  AVL++ 
Sbjct: 58  VMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPD-AVLIML 116

Query: 121 KSSK--PYPR 128
            + K  P PR
Sbjct: 117 DNQKLVPQPR 126

Homo sapiens (taxid: 9606)

>sp|Q9DB76|EMC9_MOUSE ER membrane protein complex subunit 9 OS=Mus musculus GN=Emc9 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 1   MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
           MGE+  E+S  AY K+ LHA ++  AAVNG+LL   +   + +  + D VPLFHSHL L 
Sbjct: 1   MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLC-LTDCVPLFHSHLALS 57

Query: 61  PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
             LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP+ AVL++ 
Sbjct: 58  VMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPR-AVLIML 116

Query: 121 KSSKPYPRGKT 131
            + K   R + 
Sbjct: 117 DNKKLVTRPRV 127

Mus musculus (taxid: 10090)

>sp|Q9W1Y1|EMC89_DROME ER membrane protein complex subunit 8/9 homolog OS=Drosophila melanogaster GN=CG3501 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 3/118 (2%)

Query: 6   YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEI 65
           Y++S+ AY KL+ HA K+   AVNG+LL   + +  + VEI D++PLFH  L + P  E+
Sbjct: 4   YKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKG-SQVEIVDAIPLFHQCLYVTPMAEV 62

Query: 66  SLIMIEEHYSAQGLGIVGYFHANERFDDLELDSI-AKNIGNHICRYFPQ-CAVLLITK 121
           +L++I+ H   +GL I GY+ A E F D ++D   A  I + I   F   C V++  K
Sbjct: 63  ALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVVVDNK 120

Drosophila melanogaster (taxid: 7227)

>sp|O70378|EMC8_MOUSE ER membrane protein complex subunit 8 OS=Mus musculus GN=Emc8 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 7/123 (5%)

Query: 7   ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQND------AVVEIADSVPLFHSHLGL 59
           +L+  AY K+VLH  K+   AVNG+L+  R  P+ +      +     D +PLFH  L L
Sbjct: 5   KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGSHTLFVDCIPLFHGTLAL 64

Query: 60  LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
            P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++
Sbjct: 65  TPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFGDAALIMV 124

Query: 120 TKS 122
             +
Sbjct: 125 DNA 127

Mus musculus (taxid: 10090)

>sp|Q5FVL2|EMC8_RAT ER membrane protein complex subunit 8 OS=Rattus norvegicus GN=Emc8 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 7   ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV------VEIADSVPLFHSHLGL 59
           +L+  AY K+VLH  K+   AVNG+L+  R  P+ +            D +PLFH  L L
Sbjct: 5   KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGNHTLFVDCIPLFHGTLAL 64

Query: 60  LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
            P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++
Sbjct: 65  TPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDAALIMV 124

Query: 120 TKS 122
             +
Sbjct: 125 DNA 127

Rattus norvegicus (taxid: 10116)

>sp|Q55FM0|EMC89_DICDI ER membrane protein complex subunit 8/9 homolog OS=Dictyostelium discoideum GN=DDB_G0268048 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 5/123 (4%)

Query: 8   LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISL 67
           ++  A  K  LH+ KH  ++VNG+LLG+    +   + I D +PLFH+   LLP  E+++
Sbjct: 7   ITTEALSKAHLHSFKHHASSVNGILLGKADKNS---ILITDIIPLFHTQ-TLLPMFEVAM 62

Query: 68  IMIEEHYSAQGLGIVGYFHANERF-DDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPY 126
           I IE++     + +VGY+H+N+   ++LE + IAK I + +         L+I+K     
Sbjct: 63  IQIEKYCRDNNIDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNR 122

Query: 127 PRG 129
           P G
Sbjct: 123 PSG 125

Dictyostelium discoideum (taxid: 44689)

>sp|O43402|EMC8_HUMAN ER membrane protein complex subunit 8 OS=Homo sapiens GN=EMC8 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 10/126 (7%)

Query: 7   ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSH 56
           +L+  AY K+VLH  K+   AVNG+L+  +  P+ + +             D +PLFH  
Sbjct: 5   KLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGT 64

Query: 57  LGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAV 116
           L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A+
Sbjct: 65  LALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTAL 124

Query: 117 LLITKS 122
           +++  +
Sbjct: 125 IMVDNT 130

Homo sapiens (taxid: 9606)

>sp|Q32KL5|EMC8_BOVIN ER membrane protein complex subunit 8 OS=Bos taurus GN=EMC8 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 10/126 (7%)

Query: 7   ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSH 56
           +L+  AY K+VLH  K+   AV+G+L+  +  P+ + +             D +PLFH  
Sbjct: 5   KLTTQAYCKMVLHGAKYPHCAVDGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGT 64

Query: 57  LGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAV 116
           L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A+
Sbjct: 65  LALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTAL 124

Query: 117 LLITKS 122
           +++  +
Sbjct: 125 IMVDNT 130

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
18423805	208	uncharacterized protein [Arabidopsis tha	0.928	0.620	0.738	6e-49
21592839	206	unknown [Arabidopsis thaliana]	0.928	0.626	0.738	7e-49
297796469	208	EMB2731 [Arabidopsis lyrata subsp. lyrat	0.928	0.620	0.730	1e-47
255563580	204	Neighbor of COX4, putative [Ricinus comm	0.913	0.622	0.723	5e-46
351721567	204	uncharacterized protein LOC100527135 [Gl	0.827	0.563	0.767	6e-45
388495668	205	unknown [Lotus japonicus]	0.841	0.570	0.709	2e-44
224061248	204	predicted protein [Populus trichocarpa]	0.928	0.632	0.691	3e-44
147770366	206	hypothetical protein VITISV_040251 [Viti	0.928	0.626	0.674	8e-44
225461981	206	PREDICTED: UPF0172 protein At5g55940 [Vi	0.928	0.626	0.674	1e-43
449453129	203	PREDICTED: ER membrane protein complex s	0.841	0.576	0.711	2e-43

>gi|18423805|ref|NP_568832.1| uncharacterized protein [Arabidopsis thaliana] gi|18202899|sp|Q9FG71.1|EMC89_ARATH RecName: Full=ER membrane protein complex subunit 8/9 homolog; AltName: Full=Protein EMBRYO DEFECTIVE 2731 gi|9758214|dbj|BAB08659.1| unnamed protein product [Arabidopsis thaliana] gi|18086571|gb|AAL57709.1| AT5g55940/MYN21_5 [Arabidopsis thaliana] gi|21689597|gb|AAM67420.1| AT5g55940/MYN21_5 [Arabidopsis thaliana] gi|110741034|dbj|BAE98611.1| hypothetical protein [Arabidopsis thaliana] gi|332009318|gb|AED96701.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
           GELKYE+SQNAYIKLVLH+ +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP
Sbjct: 7   GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 66

Query: 62  NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI-T 120
            LEISLIMIEEHY AQGL IVGYFHANERFDD+EL  +AKNIG+HI RYFPQ  +LL+  
Sbjct: 67  PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126

Query: 121 KSSKPYPRGK 130
           K  +   +GK
Sbjct: 127 KKLEALSKGK 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592839|gb|AAM64789.1| unknown [Arabidopsis thaliana]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
           GELKYE+SQNAYIKLVLH+ +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP
Sbjct: 5   GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 64

Query: 62  NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI-T 120
            LEISLIMIEEHY AQGL IVGYFHANERFDD+EL  +AKNIG+HI RYFPQ  +LL+  
Sbjct: 65  PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 124

Query: 121 KSSKPYPRGK 130
           K  +   +GK
Sbjct: 125 KKLEALSKGK 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796469|ref|XP_002866119.1| EMB2731 [Arabidopsis lyrata subsp. lyrata] gi|297311954|gb|EFH42378.1| EMB2731 [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 111/130 (85%), Gaps = 1/130 (0%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
           GELKYE+SQNAYIKLVLH+ +HKTAAVNGVL+GR+S ++D VVEI+DSVPLFHS+L LLP
Sbjct: 7   GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISHKDDGVVEISDSVPLFHSNLALLP 66

Query: 62  NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI-T 120
            LEISLIMIEEHY AQGL IVGYFHANERFDD+EL  +AKNIG+HI RYFPQ  +LL+  
Sbjct: 67  PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126

Query: 121 KSSKPYPRGK 130
           K  +   +GK
Sbjct: 127 KKLEALSKGK 136

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563580|ref|XP_002522792.1| Neighbor of COX4, putative [Ricinus communis] gi|223538030|gb|EEF39643.1| Neighbor of COX4, putative [Ricinus communis]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 109/130 (83%), Gaps = 3/130 (2%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
           GELKYE+SQNAYIKLVLHA KHK+ +VNGVLLGR   ++  VVEI +SVPLFH+HLGLLP
Sbjct: 5   GELKYEISQNAYIKLVLHALKHKSTSVNGVLLGRSDKKD--VVEIVESVPLFHNHLGLLP 62

Query: 62  NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI-T 120
            LEISLIMIEE+Y AQGLGIVGYFHANERFDD EL ++AKNIG+HI RYFPQ A+LL+  
Sbjct: 63  PLEISLIMIEEYYGAQGLGIVGYFHANERFDDFELGNVAKNIGDHIFRYFPQAAILLLDN 122

Query: 121 KSSKPYPRGK 130
           K  +   +GK
Sbjct: 123 KKLEALTKGK 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721567|ref|NP_001235422.1| uncharacterized protein LOC100527135 [Glycine max] gi|255631632|gb|ACU16183.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 103/116 (88%), Gaps = 1/116 (0%)

Query: 4   LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
           L+YE+ QNAYIKLVLH+ KH T+AVNGVL+GR+S  ND VVEIAD+VPLFHSH+ LLP L
Sbjct: 6   LRYEIEQNAYIKLVLHSLKHPTSAVNGVLIGRISASND-VVEIADAVPLFHSHIPLLPQL 64

Query: 64  EISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
           EISLIMIEE++SA+GL IVGYFHANER DD EL S+AKNIG+HICRYFPQ AVLL+
Sbjct: 65  EISLIMIEEYFSAKGLNIVGYFHANERSDDSELGSVAKNIGDHICRYFPQAAVLLL 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495668|gb|AFK35900.1| unknown [Lotus japonicus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 101/117 (86%)

Query: 3   ELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPN 62
           +L+YE++Q AYIKLVLH+ KH T+AVNG+L+GRVS  ND  VEI D+VPLFHSH+ LLP 
Sbjct: 5   DLRYEVAQKAYIKLVLHSLKHPTSAVNGILIGRVSASNDTTVEIVDAVPLFHSHIALLPQ 64

Query: 63  LEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
           LEISLI+IEE++SA+GL IVGYFHANERFDD EL  +AKNIG+H CRYFPQ A+LL+
Sbjct: 65  LEISLILIEEYFSAKGLNIVGYFHANERFDDHELGGVAKNIGDHTCRYFPQAAILLL 121

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061248|ref|XP_002300389.1| predicted protein [Populus trichocarpa] gi|222847647|gb|EEE85194.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 110/133 (82%), Gaps = 4/133 (3%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
           GEL+YE+SQNAYIKLVLH+ KHKT+AVNGV +G      D  V+I DSVPLFH+HLGLLP
Sbjct: 6   GELRYEISQNAYIKLVLHSLKHKTSAVNGVFVGSSC---DDGVQIIDSVPLFHNHLGLLP 62

Query: 62  NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI-T 120
            LEISLIMIEE+YSA+GLGIVGYFHANER DD+EL ++AKNIG+HI RYFPQ A+LL+  
Sbjct: 63  PLEISLIMIEEYYSARGLGIVGYFHANERSDDVELGNVAKNIGDHIYRYFPQAAILLLDN 122

Query: 121 KSSKPYPRGKTGV 133
           K  +  P+GK G+
Sbjct: 123 KKLEALPKGKDGL 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770366|emb|CAN78153.1| hypothetical protein VITISV_040251 [Vitis vinifera]

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 106/132 (80%), Gaps = 3/132 (2%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDA--VVEIADSVPLFHSHLGL 59
           GELKYE++QNAYIKLVLHA KHKTAAVN VLLGR+    D    ++I+D+VPLFHS + L
Sbjct: 3   GELKYEIAQNAYIKLVLHALKHKTAAVNAVLLGRLVTSTDGSHTLQISDAVPLFHSQITL 62

Query: 60  LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
           LP LEI+LI IEE+Y AQ +GIVGYFHANERFDD EL S+AKNIG+HI RYFPQ AV+L+
Sbjct: 63  LPPLEIALIQIEEYYGAQDMGIVGYFHANERFDDAELSSVAKNIGDHIYRYFPQAAVILL 122

Query: 120 -TKSSKPYPRGK 130
             K  +  P+GK
Sbjct: 123 DNKKLESLPKGK 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461981|ref|XP_002271498.1| PREDICTED: UPF0172 protein At5g55940 [Vitis vinifera] gi|296089957|emb|CBI39776.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 106/132 (80%), Gaps = 3/132 (2%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDA--VVEIADSVPLFHSHLGL 59
           GELKYE++QNAYIKLVLHA KHKTAAVN VLLGR+    D    ++I+D+VPLFHS + L
Sbjct: 3   GELKYEIAQNAYIKLVLHALKHKTAAVNAVLLGRLVTSTDGSHTLQISDAVPLFHSQITL 62

Query: 60  LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
           LP LEI+LI IEE+Y AQ +GIVGYFHANERFDD EL S+AKNIG+HI RYFPQ AV+L+
Sbjct: 63  LPPLEIALIQIEEYYGAQDMGIVGYFHANERFDDAELSSVAKNIGDHIYRYFPQAAVILL 122

Query: 120 -TKSSKPYPRGK 130
             K  +  P+GK
Sbjct: 123 DNKKLESLPKGK 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453129|ref|XP_004144311.1| PREDICTED: ER membrane protein complex subunit 8/9 homolog [Cucumis sativus]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 104/118 (88%), Gaps = 1/118 (0%)

Query: 2   GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
           G+L++E+SQNAYIKLVLHA KH+T AVNGVLLGR+S  ND V+EI+DSVPLFHS +GLLP
Sbjct: 3   GDLRFEISQNAYIKLVLHALKHRTTAVNGVLLGRISGPND-VIEISDSVPLFHSSIGLLP 61

Query: 62  NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
            LEISL++IEE+Y+A+GL IVGYFHANERFDD E+  +AKNIG+HI R+FP  A+LL+
Sbjct: 62  QLEISLLLIEEYYAAKGLNIVGYFHANERFDDYEVGGVAKNIGDHISRFFPHAALLLL 119

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2178403	208	emb2731 "AT5G55940" [Arabidops	0.928	0.620	0.738	2e-47
UNIPROTKB|F1SGM2	206	EMC9 "Uncharacterized protein"	0.892	0.601	0.398	5.1e-19
UNIPROTKB|E1BF12	208	EMC9 "Uncharacterized protein"	0.899	0.600	0.395	6.5e-19
UNIPROTKB|E2QSX7	207	FAM158A "Uncharacterized prote	0.892	0.599	0.410	3.6e-18
UNIPROTKB|Q9Y3B6	208	EMC9 "ER membrane protein comp	0.892	0.596	0.392	5.8e-18
RGD|1308113	206	Emc9 "ER membrane protein comp	0.899	0.606	0.372	1.2e-17
MGI|MGI:1934682	206	Emc9 "ER membrane protein comp	0.863	0.582	0.395	2e-17
FB|FBgn0034791	203	CG3501 [Drosophila melanogaste	0.827	0.566	0.389	3.7e-16
DICTYBASE|DDB_G0268048	192	DDB_G0268048 "UPF0172 protein"	0.877	0.635	0.322	4.9e-14
ZFIN|ZDB-GENE-040426-2692	202	emc8 "ER membrane protein comp	0.856	0.589	0.327	7.9e-14

TAIR|locus:2178403 emb2731 "AT5G55940" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 96/130 (73%), Positives = 112/130 (86%)

Query:     2 GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
             GELKYE+SQNAYIKLVLH+ +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP
Sbjct:     7 GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 66

Query:    62 NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT- 120
              LEISLIMIEEHY AQGL IVGYFHANERFDD+EL  +AKNIG+HI RYFPQ  +LL+  
Sbjct:    67 PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126

Query:   121 KSSKPYPRGK 130
             K  +   +GK
Sbjct:   127 KKLEALSKGK 136

GO:0003674 "molecular_function" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1SGM2 EMC9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 51/128 (39%), Positives = 76/128 (59%)

Query:     1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
             MGE+  E+S  AY+K+ LHA ++  AAVNG+LL   +P++   + + D VPLFHSHL L 
Sbjct:     1 MGEV--EISARAYVKMCLHAARYPHAAVNGLLLAP-APRSGECLCLTDCVPLFHSHLALS 57

Query:    61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
               LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP  AVL++ 
Sbjct:    58 VMLEVALNQVDVWGAQAGLVVAGYYHANAALDDQSPGPLALKIAGRIAEFFPD-AVLIML 116

Query:   121 KSSKPYPR 128
              + K  P+
Sbjct:   117 DNQKLVPQ 124

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|E1BF12 EMC9 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 51/129 (39%), Positives = 76/129 (58%)

Query:     1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRV-SPQNDAVVEIADSVPLFHSHLGL 59
             MGE+  E+S  AY+K+ LHA ++  AAVNG+LL    +P++   + + D VPLFHSHL L
Sbjct:     1 MGEV--EISARAYVKMSLHAARYPHAAVNGLLLAPAPAPRSGECLCLTDCVPLFHSHLAL 58

Query:    60 LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
                LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP  AVL++
Sbjct:    59 SVMLEVALNQVDVWGAQAGLVVAGYYHANAALDDQSPGPLALKIAGRIAEFFPD-AVLIM 117

Query:   120 TKSSKPYPR 128
               + K  P+
Sbjct:   118 LDNQKLVPQ 126

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|E2QSX7 FAM158A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 53/129 (41%), Positives = 76/129 (58%)

Query:     1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
             MGE+  E+S  AY K+ LHA ++  A+VNG+LL   SP++   + + D VPLFHSHL L 
Sbjct:     1 MGEV--EISARAYGKMCLHAARYPHASVNGLLLAP-SPRSGECLCLTDCVPLFHSHLALS 57

Query:    61 PNLEISLIMIEEHYSAQ-GLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
               LE++L    + + AQ GL + GY+HAN   DD     +A  I   I  +FP  AVL++
Sbjct:    58 VMLEVALNQQVDVWGAQAGLIVAGYYHANAALDDQSAGPLALKIAGRIAEFFPD-AVLVM 116

Query:   120 TKSSKPYPR 128
               + K  P+
Sbjct:   117 LDNQKLVPQ 125

GO:0072546 "ER membrane protein complex" evidence=IEA

UNIPROTKB|Q9Y3B6 EMC9 "ER membrane protein complex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 51/130 (39%), Positives = 76/130 (58%)

Query:     1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
             MGE+  E+S  AY+K+ LHA ++  AAVNG+ L   +P++   + + D VPLFHSHL L 
Sbjct:     1 MGEV--EISALAYVKMCLHAARYPHAAVNGLFLAP-APRSGECLCLTDCVPLFHSHLALS 57

Query:    61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
               LE++L  ++   +  GL + GY+HAN   +D     +A  I   I  +FP  AVL++ 
Sbjct:    58 VMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPD-AVLIML 116

Query:   121 KSSK--PYPR 128
              + K  P PR
Sbjct:   117 DNQKLVPQPR 126

GO:0072546 "ER membrane protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1308113 Emc9 "ER membrane protein complex subunit 9" [Rattus norvegicus (taxid:10116)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 48/129 (37%), Positives = 72/129 (55%)

Query:     1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
             MGE+  E+S  AY K+ LHA ++  AAVNG+LL   +   + +  + D VPLFHSHL L 
Sbjct:     1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLC-LTDCVPLFHSHLALS 57

Query:    61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI- 119
               LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP   ++++ 
Sbjct:    58 VMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPNAVLIMLD 117

Query:   120 TKSSKPYPR 128
              K    +PR
Sbjct:   118 NKKLVTWPR 126

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0072546 "ER membrane protein complex" evidence=ISO;ISS

MGI|MGI:1934682 Emc9 "ER membrane protein complex subunit 9" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 49/124 (39%), Positives = 72/124 (58%)

Query:     1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
             MGE+  E+S  AY K+ LHA ++  AAVNG+LL   +   + +  + D VPLFHSHL L 
Sbjct:     1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLC-LTDCVPLFHSHLALS 57

Query:    61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
               LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP+ AVL++ 
Sbjct:    58 VMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPR-AVLIML 116

Query:   121 KSSK 124
              + K
Sbjct:   117 DNKK 120

GO:0005737 "cytoplasm" evidence=ISO

GO:0072546 "ER membrane protein complex" evidence=ISO

FB|FBgn0034791 CG3501 [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 46/118 (38%), Positives = 69/118 (58%)

Query:     6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEI 65
             Y++S+ AY KL+ HA K+   AVNG+LL   + +   V EI D++PLFH  L + P  E+
Sbjct:     4 YKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKGSQV-EIVDAIPLFHQCLYVTPMAEV 62

Query:    66 SLIMIEEHYSAQGLGIVGYFHANERFDDLELDSI-AKNIGNHICRYFPQ-CAVLLITK 121
             +L++I+ H   +GL I GY+ A E F D ++D   A  I + I   F   C V++  K
Sbjct:    63 ALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVVVDNK 120

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005875 "microtubule associated complex" evidence=IDA

DICTYBASE|DDB_G0268048 DDB_G0268048 "UPF0172 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 41/127 (32%), Positives = 70/127 (55%)

Query:     8 LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISL 67
             ++  A  K  LH+ KH  ++VNG+LLG+    +   + I D +PLFH+   LLP  E+++
Sbjct:     7 ITTEALSKAHLHSFKHHASSVNGILLGKADKNS---ILITDIIPLFHTQT-LLPMFEVAM 62

Query:    68 IMIEEHYSAQGLGIVGYFHANERF-DDLELDSIAKNIGNHICRYFPQCAVLLITKSSKPY 126
             I IE++     + +VGY+H+N+   ++LE + IAK I + +         L+I+K     
Sbjct:    63 IQIEKYCRDNNIDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNR 122

Query:   127 PRGKTGV 133
             P G   +
Sbjct:   123 PSGLVSI 129

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040426-2692 emc8 "ER membrane protein complex subunit 8" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 40/122 (32%), Positives = 64/122 (52%)

Query:     4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAV---VEIADSVPLFHSHLGLL 60
             +  +L+  AY K++LHA K+   AVNG+L+     + D     V   D VPLFH  L L 
Sbjct:     1 MSLKLTTQAYCKMLLHAAKYPHCAVNGLLVAEKHKKKDNPRDSVLCVDCVPLFHGALALA 60

Query:    61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT 120
             P LE++L +I+         I GY+ ANER  +   + +A+ +   I   F + A++++ 
Sbjct:    61 PMLEVALTLIDTWCKENKYVIAGYYQANERIKETRPNQVAEKVAARISENFSEAAMIMMD 120

Query:   121 KS 122
              S
Sbjct:   121 NS 122

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FG71	EMC89_ARATH	No assigned EC number	0.7384	0.9280	0.6201	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	emb2731	emb2731 (embryo defective 2731); embryo defective 2731 (emb2731); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- embryonic development ending in seed dormancy; LOCATED IN- endoplasmic reticulum; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0172 (InterPro-IPR005366); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G51620.3); Has 220 Blast hits to 219 proteins in 84 species- Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 4 [...] (208 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	emb2735	emb2735 (embryo defective 2735); embryo defective 2735 (emb2735); FUNCTIONS IN- molecular_funct [...] (162 aa)							•		0.821
	emb1513	emb1513 (embryo defective 1513); copper ion transmembrane transporter; embryo defective 1513 (e [...] (251 aa)							•		0.821
	emb2170	emb2170 (embryo defective 2170); embryo defective 2170 (emb2170); FUNCTIONS IN- molecular_funct [...] (248 aa)							•		0.821
	EMB2743	EMB2743 (EMBRYO DEFECTIVE 2743); EMBRYO DEFECTIVE 2743 (EMB2743); FUNCTIONS IN- molecular_funct [...] (103 aa)							•		0.788
	MIRO1	MIRO1 (Miro-related GTP-ase 1); GTP binding; Encodes a protein with similarity to GTPases that [...] (648 aa)							•		0.659
	AT2G37120	DNA-binding S1FA family protein; DNA-binding S1FA family protein; FUNCTIONS IN- DNA binding; IN [...] (76 aa)				•					0.573
	AT1G51630	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (423 aa)				•					0.546
	AT1G74280	hydrolase, alpha/beta fold family protein; hydrolase, alpha/beta fold family protein; FUNCTIONS [...] (372 aa)				•					0.538
	AT5G24760	alcohol dehydrogenase, putative; alcohol dehydrogenase, putative; FUNCTIONS IN- oxidoreductase [...] (381 aa)				•					0.537
	AT5G49830	unknown protein; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAIN [...] (814 aa)				•					0.526

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam03665	195	pfam03665, UPF0172, Uncharacterized protein family	6e-50
cd08060	182	cd08060, MPN_UPF0172, Mov34/MPN/PAD-1 family: UPF0	3e-45
cd07767	116	cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain	0.003

>gnl|CDD|217666 pfam03665, UPF0172, Uncharacterized protein family (UPF0172)

 Score =  157 bits (400), Expect = 6e-50
 Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 3   ELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPN 62
             + E+S  AY K++LHA K+   AVNG+LLG+ S ++ +V  I D+VPLFHS L L P 
Sbjct: 1   MTEVEISPLAYAKMILHAAKYPHCAVNGLLLGK-STKSSSV-LITDAVPLFHSTLALAPM 58

Query: 63  LEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
           LE++L  +E +   +GL IVGY+HANERFDD     +AK I + I   F    +LL+
Sbjct: 59  LEVALAQVESYAKQKGLVIVGYYHANERFDDSSPSPVAKKIADKIAENFNNAVLLLV 115

In Chlamydomonas reinhardtii the protein TLA1 (truncated light-harvesting chlorophyll antenna size) apparently regulates genes that define the chlorophyll-a antenna size in the photosynthetic apparatus. This family was formerly known as UPF0172. Length = 195

>gnl|CDD|163691 cd08060, MPN_UPF0172, Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p)

 Score =  145 bits (367), Expect = 3e-45
 Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 2/112 (1%)

Query: 8   LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISL 67
           LS  AY+K++LHA K+   AVNG+LLG+ S      VEI D+VPLFHS L L P LE++L
Sbjct: 1   LSTLAYVKMLLHAAKYPHCAVNGLLLGKKSS--GGSVEITDAVPLFHSCLALAPMLEVAL 58

Query: 68  IMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLI 119
            +++ +  + GL IVGY+ ANER DD     +AK I + I   F    +L++
Sbjct: 59  ALVDAYCKSSGLVIVGYYQANERLDDSSPSPVAKKIADKIAENFSNACLLMV 110

This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity. Length = 182

>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 14 IKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEH 73
             +  A+      V G+L G  + +    V   D V       G   +    L+ ++  
Sbjct: 2  KMFLDAAKSINGKEVIGLLYGSKTKK----VLDVDEVIAVPFDEGDKDDNVWFLMYLDFK 57

Query: 74 YSAQGLGIVGYFHANER 90
              GL IVG++H + +
Sbjct: 58 KLNAGLRIVGWYHTHPK 74

MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. JAB1 is a component of the COP9 signalosome (CSN), a regulatory particle of the ubiquitin (Ub)/26S proteasome system occurring in all eukaryotic cells; it cleaves the ubiquitin-like protein NEDD8 from the cullin subunit of the SCF (Skp1, Cullins, F-box proteins) family of E3 ubiquitin ligases. AMSH (associated molecule with the SH3 domain of STAM, also known as STAMBP), a member of JAMM/MPN+ deubiquitinases (DUBs), specifically cleaves Lys 63-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. Similarly, BRCC36, part of the nuclear complex that includes BRCA1 protein and is targeted to DNA damage foci after irradiation, specifically disassembles K63-linked polyUb. BRCC36 is aberrantly expressed in sporadic breast tumors, indicative of a potential role in the pathogenesis of the disease. Some variants of the JAB1/MPN domains lack key residues in their JAMM motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Mov34/PSMD7, Rpn8, CSN6, Prp8p, and the translation initiation factor 3 subunits f (p47) and h (p40) do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PF03665	196	UPF0172: Uncharacterised protein family (UPF0172);	100.0
KOG3289	199	consensus Uncharacterized conserved protein encode	100.0
cd08060	182	MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family	100.0
cd07767	116	MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al	99.78
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	99.12
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	99.02
PF01398	114	JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte	99.01
smart00232	135	JAB_MPN JAB/MPN domain. Domain in Jun kinase activ	99.01
cd08057	157	MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai	98.98
cd08067	187	MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu	98.87
cd08062	280	MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w	98.74
cd08058	119	MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w	98.71
cd08064	265	MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi	98.64
cd08063	288	MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit	98.49
cd08068	244	MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun	98.48
PLN03246	303	26S proteasome regulatory subunit; Provisional	98.42
cd08066	173	MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ	98.23
KOG1554	347	consensus COP9 signalosome, subunit CSN5 [Posttran	97.95
cd08070	128	MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit	97.65
PF14464	104	Prok-JAB: Prokaryotic homologs of the JAB domain;	97.0
KOG1556	309	consensus 26S proteasome regulatory complex, subun	96.48
cd08072	117	MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1	96.03
COG1310	134	Predicted metal-dependent protease of the PAD1/JAB	95.58
KOG2975	288	consensus Translation initiation factor 3, subunit	94.8
KOG1555	316	consensus 26S proteasome regulatory complex, subun	94.77
TIGR02256	131	ICE_VC0181 integrative and conjugative element pro	93.6
cd08059	101	MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains	93.48
KOG1560	339	consensus Translation initiation factor 3, subunit	93.23
cd08073	108	MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains	84.31
KOG3050	299	consensus COP9 signalosome, subunit CSN6 [Posttran	83.34

>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function

Probab=100.00  E-value=1.5e-57  Score=361.96  Aligned_cols=127  Identities=40%  Similarity=0.653  Sum_probs=119.0

Q ss_pred             ce-eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceEE
Q 032531            4 LK-YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIV   82 (139)
Q Consensus         4 M~-v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~Iv   82 (139)
                      |+ |+||++||+||+|||+|||||+|||+|||++++++ +.|.|+|||||||++++|+||+|+||+|||+||+++|++||
T Consensus         1 m~~v~is~~AY~K~~LHaaKyP~~aVnGvLlg~~~~~~-~~v~i~DaVPLfH~~~~L~PmlEvAL~qvd~~~~~~gl~Iv   79 (196)
T PF03665_consen    1 MSSVEISSRAYAKMILHAAKYPHCAVNGVLLGKSSKSS-SEVEIVDAVPLFHHWLSLSPMLEVALAQVDAYAKSNGLVIV   79 (196)
T ss_pred             CceEEEcHHHHHHHHHHhccCCCCceeeEEEeccCCCC-ceEEEeeceeccccccCcchHHHHHHHHHHHHHhhCCCEEE
Confidence            55 99999999999999999999999999999976653 35999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC-CCCCCCCc
Q 032531           83 GYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS-KPYPRGKT  131 (139)
Q Consensus        83 GyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k-~~~~k~~~  131 (139)
                      ||||||||++|.+|+++|+|||+||+++|++|+++||||+| +...+...
T Consensus        80 GyY~Ane~~~d~~~~~~a~kiad~I~~~~~~a~ll~idn~kl~~~~~~~~  129 (196)
T PF03665_consen   80 GYYQANERLDDNSPSPVAEKIADKIAENFSDACLLMIDNKKLSSDCKAPA  129 (196)
T ss_pred             EEEEeccccccCCCCHHHHHHHHHHHhhCCCcEEEEEECcccccccCCCc
Confidence            99999999999999999999999999999999999999999 77665543

>KOG3289 consensus Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene [General function prediction only]

Probab=100.00  E-value=7.2e-54  Score=337.87  Aligned_cols=124  Identities=44%  Similarity=0.715  Sum_probs=117.2

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceEEEEE
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYF   85 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~IvGyY   85 (139)
                      |++|++||+||+|||+||||++|||+|||+.++.| +.++|+|||||||+++.|+||||+||++||.||.+.|++|+|||
T Consensus         4 veis~~aY~kmiLH~akyph~aVnGLLla~~~~kg-~~v~itdcVPLfH~~laLaPmlEvAl~lId~~~~~~GlviaGyy   82 (199)
T KOG3289|consen    4 VEISALAYVKMILHAAKYPHAAVNGLLLAPATGKG-ECVEITDCVPLFHSHLALAPMLEVALNLIDVWGAQAGLVIAGYY   82 (199)
T ss_pred             eeehhhHHHHHHHHhccCcccceeeEEEeccCCCC-CeEEEEecchhhccccccccHHHHHHHHHHHHHHhcCeEEEEEe
Confidence            99999999999999999999999999999876655 69999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC-CCCCCCC
Q 032531           86 HANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS-KPYPRGK  130 (139)
Q Consensus        86 ~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k-~~~~k~~  130 (139)
                      |||||++|.++.++|+|||+||+|+||+|++||+||+| -...++.
T Consensus        83 ~Ane~~~D~s~~~~A~kiadrIse~f~~A~ilv~dn~~l~~~~e~~  128 (199)
T KOG3289|consen   83 HANERVNDQSLNPVALKIADRISEFFPDAAILVLDNKKLVPQCERP  128 (199)
T ss_pred             ecCCCccccCccHHHHHHHHHHHhhCCCCeEEEEeccccccccCCC
Confidence            99999999999999999999999999999999999998 4444444

>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p)

Probab=100.00  E-value=3.3e-43  Score=276.81  Aligned_cols=119  Identities=43%  Similarity=0.693  Sum_probs=112.0

Q ss_pred             EeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceEEEEEEe
Q 032531            8 LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHA   87 (139)
Q Consensus         8 is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~IvGyY~A   87 (139)
                      |+++||.||++||+|||+++|||+|+|+.+.+  +.+.|+|+|||||+++.|+||+|+||.|||.||+++|+.||||||+
T Consensus         1 is~~ay~ki~~HA~k~p~~evcGlLlG~~~~~--~~~~V~d~vPl~h~~~~l~P~~Eval~~ve~~~~~~gl~IvG~Yhs   78 (182)
T cd08060           1 LSTLAYVKMLLHAAKYPHCAVNGLLLGKKSSG--GSVEITDAVPLFHSCLALAPMLEVALALVDAYCKSSGLVIVGYYQA   78 (182)
T ss_pred             CCHHHHHHHHHHHHHcCCchheEEEEeeecCC--CCEEEEEEEEcCCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEec
Confidence            57899999999999999999999999987633  4689999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC-CCCCC
Q 032531           88 NERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS-KPYPR  128 (139)
Q Consensus        88 ne~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k-~~~~k  128 (139)
                      |++++|.+|+++|+||||||+++|++|+++||||+| ..-.+
T Consensus        79 h~~~~d~~~~~~a~kIadki~~~~~~a~ll~vdn~~l~~~~~  120 (182)
T cd08060          79 NERLDDSSPSPVAKKIADKIAENFSNACLLMVDNEKLTLDCK  120 (182)
T ss_pred             CCcccCCCCcHHHHHHHHHHHHhCCCCEEEEEeCcccccccc
Confidence            999999999999999999999999999999999999 55443

This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.

>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains

Probab=99.78  E-value=5.8e-18  Score=119.94  Aligned_cols=105  Identities=23%  Similarity=0.278  Sum_probs=91.9

Q ss_pred             HHHHhhhhcCC-CCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceEEEEEEeCCCCC
Q 032531           14 IKLVLHARKHK-TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFD   92 (139)
Q Consensus        14 ~K~iLHAaKyP-~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~IvGyY~Ane~~~   92 (139)
                      +|+++|.+|++ ...|+|+|+|+..+    .+.++|++|++|+.....|+.+.++.+++.++...|+.||||||+++...
T Consensus         1 ~k~il~~a~~~~~~ev~G~L~G~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVGwyhshp~~~   76 (116)
T cd07767           1 LKMFLDAAKSINGKEVIGLLYGSKTK----KVLDVDEVIAVPFDEGDKDDNVWFLMYLDFKKLNAGLRIVGWYHTHPKPS   76 (116)
T ss_pred             CHhHHHHHhcCCCcEEEEEeEEEEcC----CEEEEEEEEecccCCCCCccHHHHHHHHHHHHhcCCCeEEEEEEcCCCCC
Confidence            48999999998 79999999998654    27788999999998888999999999999999999999999999987654


Q ss_pred             CCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           93 DLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        93 d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                       ..|++......+++++.+++++++++|+++
T Consensus        77 -~~~s~~dv~~~~~~q~~~~~~v~li~~~~~  106 (116)
T cd07767          77 -CFLSPNDLATHELFQRYFPEKVMIIVDVKP  106 (116)
T ss_pred             -CccCHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence             356666666779999999999999999988

MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains are found in the N-terminal termini of proteins with a variety of functions; they are components of the proteasome regulatory subunits, the signalosome (CSN), eukaryotic translation initiation factor 3 (eIF3) complexes, and regulators of transcription factors. These domains are isopeptidases that release ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. Catalytically active MPN domains contain a metalloprotease signature known as the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif. For example, Rpn11 (also known as POH1 or PSMD14), a subunit of the 19S proteasome lid is involved in the ATP-dependent degradation of ubiquitinated proteins, contains the conserved JAMM motif involved in zinc ion coordination. Poh1 is a regulator of c-Jun, an important regulator of cell proliferation, differentiation, survival and death. J

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=99.12  E-value=1.8e-09  Score=89.45  Aligned_cols=114  Identities=19%  Similarity=0.248  Sum_probs=84.3

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchh--HHHHHHHHHH-HHh--hhCCce
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP--NLEISLIMIE-EHY--SAQGLG   80 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP--mlEvAL~~id-~~~--~~~~l~   80 (139)
                      |.|+..++.||+.||.+-....|+|+|+|+..+   ..+.|+||+|+-|....-..  -.|.-..+++ ...  ...+..
T Consensus        12 V~Is~~allkil~Ha~~~~p~Ev~GlLlG~~~~---~~v~Vt~~fp~p~~~t~~~v~~~~e~~~~m~~~~~~~~~~~~~~   88 (268)
T cd08069          12 VYISSLALLKMLKHARAGGPIEVMGLMLGKVDD---YTIIVVDVFALPVEGTETRVNAQDEFQEYMVQYEMLKQTGRPEN   88 (268)
T ss_pred             EEECHHHHHHHHHHHhccCCceEEEEEEeeecC---CeEEEEEEEECCcCCCCCceeccHHHHHHHHHHHHHHHhCCCce
Confidence            899999999999999888778999999998544   47999999999875443210  1122222232 122  346799


Q ss_pred             EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           81 IVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      ||||||...... ..|+..-..+-..-++..+.++.|++|..+
T Consensus        89 vVGWYHSHP~~g-~~~S~~Dv~tq~~yq~~~~~~V~lViDP~~  130 (268)
T cd08069          89 VVGWYHSHPGYG-CWLSGIDVNTQQLNQQLQDPFVAVVVDPIR  130 (268)
T ss_pred             eEeeeccCCCcC-CcCCHHHHHHHHHHHhcCCCcEEEEEeCCc
Confidence            999999986555 567877777777667777889999999765

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=99.02  E-value=9e-09  Score=84.95  Aligned_cols=112  Identities=15%  Similarity=0.193  Sum_probs=78.3

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchh-----HHHHHHHHHHHHhhhCCc-
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP-----NLEISLIMIEEHYSAQGL-   79 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP-----mlEvAL~~id~~~~~~~l-   79 (139)
                      |.|++.++.||+-|+-+.....|.|+|||...+   +.++|+||.|+=|....-.+     ..+--+.+++ ..++.|. 
T Consensus         3 V~I~~~vllkIv~H~~~~~p~~v~G~LLG~~~~---~~leVtn~Fp~P~~~~~~~~~~~~~~~~yq~~m~~-~~r~v~~~   78 (266)
T cd08065           3 VQIDGLVVLKIIKHCKEELPELVQGQLLGLDVG---GTLEVTNCFPFPKSEEDDSDRADEDIADYQLEMMR-LLREVNVD   78 (266)
T ss_pred             EEEeHHHHHHHHHHHhcCCCcEEEEEEeeeEcC---CEEEEEeccCCCCCCCCCcchhhhhHHHHHHHHHH-HHHHhCCC
Confidence            899999999999999999999999999998764   48999999999997543332     1122233333 3566776 


Q ss_pred             -eEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           80 -GIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        80 -~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                       .||||||... .+ ...++.-...--......++++.|++|..+
T Consensus        79 e~iVGWY~S~p-~~-~~~~~s~id~~~~~q~~~~~~v~Li~D~~~  121 (266)
T cd08065          79 HNHVGWYQSTY-LG-SFFTRDLIETQYNYQEAIEESVVLVYDPSK  121 (266)
T ss_pred             CcEEEeEeecC-CC-CcCCHHHHHHHHHHhccCCCCEEEEECCCc
Confidence             9999999876 22 333332222222223334778999999875

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors

Probab=99.01  E-value=4.2e-09  Score=75.34  Aligned_cols=104  Identities=24%  Similarity=0.275  Sum_probs=75.6

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCch----hHHHHHHHHHHHHhhh-CCce
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL----PNLEISLIMIEEHYSA-QGLG   80 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~Ls----PmlEvAL~~id~~~~~-~~l~   80 (139)
                      |.|++.+..||+-|+-+.+...|.|+|+|...++  ..+.|+|++|+=|....-.    +.... -.+++.+-+- ..+.
T Consensus         6 V~i~p~vll~i~~h~~r~~~~~v~G~LlG~~~~~--~~v~I~~~f~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   82 (114)
T PF01398_consen    6 VQIHPLVLLKIIDHATRSSPNEVIGLLLGTQDGD--NTVEITNSFPVPHSESEDDCDMDDEDFQ-KKMIELLKKVNPNLE   82 (114)
T ss_dssp             EEEEHHHHHHHHHHHHHHHCTEEEEEEEEEEETT---EEEEEEEEEESEEEESSEEEEECCHHH-HHHHHHHHHCSTTSE
T ss_pred             EEECHHHHHHHHHHHhcCCCCEEEEEEEEEecCc--eEEEEEEEEEeeEecCccccccchhhHH-HHHHhhhccccccce
Confidence            8899999999999999988889999999987664  2899999999987643321    12122 3455554432 4599


Q ss_pred             EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCC
Q 032531           81 IVGYFHANERFDDLELDSIAKNIGNHICRYFPQ  113 (139)
Q Consensus        81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~  113 (139)
                      ||||||...... ..|++....+-...++..++
T Consensus        83 iVGWY~s~p~~~-~~~S~~di~~q~~~q~~~~~  114 (114)
T PF01398_consen   83 IVGWYHSHPNIS-CFPSPTDIETQKQYQRMNPN  114 (114)
T ss_dssp             EEEEEEEESSS--SS--HHHHHHHHHHHHHTTT
T ss_pred             EEEEEEccCCcc-ccCCHHHHHHHHHHHHhCCC
Confidence            999999876554 66788888888777776553

This family is also known as the MPN domain [] and PAD-1-like domain []. It has been shown that this domain occurs in prokaryotes []. Mov34 proteins act as the regulatory subunit of the 26 proteasome, which is involved in the ATP-dependent degradation of ubiquitinated proteins. The function of this domain is unclear, but it is found in the N terminus of the proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors. A number of the proteins associated with this family belong to MEROPS peptidase family M67 (clan M-). This includes the Poh1 peptidase of Saccharomyces cerevisiae (Baker's yeast) which is a component of the 19S proteasome regulatory particle.; GO: 0005515 protein binding; PDB: 2ZNV_D 2ZNR_A 4E0Q_A 2P87_A 2P8R_A 2O96_B 2O95_A 3RZU_F 3RZV_A.

>smart00232 JAB_MPN JAB/MPN domain

Probab=99.01  E-value=3.4e-08  Score=71.12  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=84.3

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccC----chhHHHHHHHHHHHH-hhhCCce
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG----LLPNLEISLIMIEEH-YSAQGLG   80 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~----LsPmlEvAL~~id~~-~~~~~l~   80 (139)
                      +.+.+.++.||+-|+.+.....++|+|+|+..+   +.+.|++++|+-...-.    --++ +---.+.+.+ ....++.
T Consensus         2 v~i~~~v~~~i~~h~~~~~p~e~~G~L~G~~~~---~~~~i~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   77 (135)
T smart00232        2 VKVHPLVPLNILKHAIRDGPEEVCGVLLGKSNK---DRPEVKEVFAVPNEPQDDSVQEYDE-DYSHLMDEELKKVNKDLE   77 (135)
T ss_pred             EEEcHHHHHHHHHHHhcCCCcEEEEEEEEEEcC---CEEEEEEEEecCcCCCCcchhhhhh-hHHHHHHHHHHhhCCCce
Confidence            678999999999999999899999999998654   37999999998654211    0111 1111222332 3468899


Q ss_pred             EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           81 IVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      +|||||...... ..|+..-..++.......+.++.+.+|..+
T Consensus        78 ~vGwyhshp~~~-~~pS~~D~~~~~~~~~~~~~~~~~~v~~~~  119 (135)
T smart00232       78 IVGWYHSHPDES-PFPSEVDVATHESYQAPWPISVVLIVDPIK  119 (135)
T ss_pred             EEEEEEcCCCCC-CCcCHHHHHHHHHHHhcCCceEEEEECCCc
Confidence            999999976533 568888888888888888888888898877

Domain in Jun kinase activation domain binding protein and proteasomal subunits. Domain at Mpr1p and Pad1p N-termini. Domain of unknown function.

>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic

Probab=98.98  E-value=2.5e-08  Score=75.81  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=83.8

Q ss_pred             eEEeHHHHHHHHhhhhcCC--CCeeeEEEeeecCCCCCceeEEEeceeccccccCch--hHHHHHHHHHHHHhh-hCCce
Q 032531            6 YELSQNAYIKLVLHARKHK--TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL--PNLEISLIMIEEHYS-AQGLG   80 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP--~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~Ls--PmlEvAL~~id~~~~-~~~l~   80 (139)
                      |.|.+.+..||+=|..+-.  ...|.|+|||...+   +.+.|+||+|+-|..-.-.  --.|---.+++.+-+ ..+..
T Consensus         1 V~ihplvll~I~dh~~R~~~~~~~v~G~LlG~~~~---~~veV~nsF~lp~~~~~~~~~~d~~y~~~m~~~~~~v~~~~~   77 (157)
T cd08057           1 VQLHPLVLLNISDHYTRRKYGIKRVIGVLLGYVDG---DKIEVTNSFELPFDEEEESIFIDTEYLEKRYNLHKKVYPQEK   77 (157)
T ss_pred             CEEccHHHhhHHHHHHhccCCCCeEEEEEEeEEeC---CEEEEEEeEEccccCCCcchhhhHHHHHHHHHHHHHhCCCCC
Confidence            5789999999999998887  78999999998764   4899999999998643221  123333344444433 25689


Q ss_pred             EEEEEEeCCCCCCCCCCHHHHHHHHHHHhh-CCCceEEEEeCCC
Q 032531           81 IVGYFHANERFDDLELDSIAKNIGNHICRY-FPQCAVLLITKSS  123 (139)
Q Consensus        81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~-~~~a~ll~vDn~k  123 (139)
                      +||||+...... +.+......|-+.+... .+.++++++|-.+
T Consensus        78 vVGWY~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~v~L~~D~~~  120 (157)
T cd08057          78 IVGWYSIGSNNS-NEISKSDNSLHSQFSLISEENPLILILDPSL  120 (157)
T ss_pred             EEEEEeecCCCC-CCCChhHHHHHHHHHhccCCCCEEEEEcCCc
Confidence            999999875433 44666677777777775 6778999999755

This family contains MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains variants lacking key residues in the JAB1/MPN/Mov34 metalloenzyme (JAMM) motif and are unable to coordinate a metal ion. Comparisons of key catalytic and metal binding residues explain why the MPN-containing proteins Rpn7/PSMD7, Rpn8/PSMD8, CSN6, Prp8p, and the translation initiation factor 3 subunits f and h do not show catalytic isopeptidase activity. It has been proposed that the MPN domain in these proteins has a primarily structural function. Rpn7 is known to be critical for the integrity of the 26S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. CSN6 is a highly conserved protein complex with diverse functions, including several import

>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase

Probab=98.87  E-value=1.5e-07  Score=74.70  Aligned_cols=112  Identities=21%  Similarity=0.304  Sum_probs=80.6

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccc----cCchhHHHHHHHHHHHHhhhCCceE
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSH----LGLLPNLEISLIMIEEHYSAQGLGI   81 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~----~~LsPmlEvAL~~id~~~~~~~l~I   81 (139)
                      |+||..|..||+.||-.-. ..|+|+|+|+...++ ..+.|+++.|.-=..    ....|.-|   ..+..+.++.|+.+
T Consensus         7 V~Is~~all~m~~Ha~~~~-~EvcGlL~G~~d~~~-~~l~Vt~~~p~~~~~~~~~~e~dp~~q---~e~~~~l~~~gl~v   81 (187)
T cd08067           7 VTVSSNALLLMDFHCHLTT-SEVIGYLGGTWDPNT-QNLTILQAFPCRSRLTGLDCEMDPVSE---TEIRESLESRGLSV   81 (187)
T ss_pred             EEECHHHHHHHHHHhcCCC-cEEEEEEEeEEcCCC-CeEEEEEEEecCCCCCCcccccCHHHH---HHHHHHHHHcCCEE
Confidence            8999999999999999988 999999999854321 478999999975421    22344333   33456678899999


Q ss_pred             EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCC-------CceEEEEeCCC
Q 032531           82 VGYFHANERFDDLELDSIAKNIGNHICRYFP-------QCAVLLITKSS  123 (139)
Q Consensus        82 vGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~-------~a~ll~vDn~k  123 (139)
                      |||||+..... ..||..-..---..+..++       -.+.+++|...
T Consensus        82 VGwYHSHP~~~-~~pS~~Di~tQ~~yQ~~~~~~~~~~~p~v~~I~~P~~  129 (187)
T cd08067          82 VGWYHSHPTFP-PNPSLRDIDTQLDYQIMFKGSDSGYEPCVGLICSPYD  129 (187)
T ss_pred             EEEEecCCCCC-cCCCHHHHHHHHHHHhhccccccCCCCeEEEEEcccc
Confidence            99999987666 6677754444444444444       36678887655

This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p

>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8

Probab=98.74  E-value=2.8e-07  Score=77.06  Aligned_cols=110  Identities=18%  Similarity=0.226  Sum_probs=80.9

Q ss_pred             eEEeHHHHHHHHhhhhcCC---CCeeeEEEeeecCCCCCceeEEEeceeccccccCchh-H----HHHHHHHHHHHhh-h
Q 032531            6 YELSQNAYIKLVLHARKHK---TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP-N----LEISLIMIEEHYS-A   76 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP---~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP-m----lEvAL~~id~~~~-~   76 (139)
                      |.|.+.+..||+=|..+.+   ...|.|+|||...+   ..++|+||.|+-|....=.+ .    .+-.-.+.+.+-+ -
T Consensus         3 V~ihplVLl~I~dh~~R~~~~~~~~ViG~LLG~~~~---~~veItnsF~~p~~~~~~~~~~~~~d~~y~~~m~~~~kkv~   79 (280)
T cd08062           3 VVVHPLVLLSVVDHYNRVAKGTSKRVVGVLLGSWKK---GVLDVTNSFAVPFEEDEKDPSVWFLDHNYLENMYGMFKKVN   79 (280)
T ss_pred             EEEehHHHHHHHHHHhhhcCCCCceEEEEEEEEEeC---CEEEEEEeeecCccCCCCCcchhhhhHHHHHHHHHHHHHhC
Confidence            7899999999999998875   45699999998765   48999999999886433232 1    2333344444433 2


Q ss_pred             CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           77 QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        77 ~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      .+..+||||+....++     +....|-+-+.+..++++++++|-..
T Consensus        80 ~~e~vVGWY~tg~~~~-----~~d~~ih~~~~~~~~~pv~l~vd~~~  121 (280)
T cd08062          80 AKEKIVGWYSTGPKLR-----PNDLDINELFRRYCPNPVLVIIDVRP  121 (280)
T ss_pred             CCCCeEEEecCCCCCC-----cchHHHHHHHHHhCCCCEEEEEecCC
Confidence            5599999999875543     34446667777788889999999765

This family includes lid subunits of the 26 S proteasome regulatory particles, Rpn7 (PSMD7; proteasome 26S non-ATPase subunit 7; p44), and Rpn8 (PSMD8; proteasome 26S non-ATPase subunit 8; p40; Mov34). Rpn7 is known to be critical for the integrity of the 26 S proteasome complex by establishing a correct lid structure. It is necessary for the incorporation/anchoring of Rpn3 and Rpn12 to the lid and essential for viability and normal mitosis. Rpn7 and Rpn8 are ATP-independent components of the 19S regulator subunit, and contain the MPN structural motif on its N-terminal region. However, while they show a typical MPN metalloprotease fold, they lack the canonical JAMM motif, and therefore do not show catalytic isopeptidase activity. It is suggested that Rpn7 function is primarily structural.

>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic

Probab=98.71  E-value=3.7e-07  Score=66.39  Aligned_cols=105  Identities=18%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             HHHHHHhhhhcCCCCeeeEEEeeecCCCC--CceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceEEEEEEeCC
Q 032531           12 AYIKLVLHARKHKTAAVNGVLLGRVSPQN--DAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANE   89 (139)
Q Consensus        12 AY~K~iLHAaKyP~~aVnGvLlG~~~~~~--~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~IvGyY~Ane   89 (139)
                      +..||+-||.+-....|+|+|+|....+.  ...+.|+++.|.-..   -.| .|  ..+......+.|+.+|||||+..
T Consensus         2 ~~~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~~~~~v~~~~p~~~~---~~~-~~--~~~~~~~~~~~g~~~vG~YHSHP   75 (119)
T cd08058           2 ALLKMLQHAESNTGIEVMGLLCGELTHNEFTDKHVIVPKQSAGPDS---CTG-EN--VEELFNVQTGRPLLVVGWYHSHP   75 (119)
T ss_pred             HHHHHHHHhcCCCCeEEEEEeeeEEecCccceeEEEEeecCCCCCC---chh-HH--HHHHHHHHhCCCCeEEEEEecCC
Confidence            67899999999877899999999753211  135788888886442   223 22  22233445789999999999986


Q ss_pred             CCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           90 RFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        90 ~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      ... ..||+.-.+.-..-+...|+++.+++|-.+
T Consensus        76 ~~~-~~pS~~Di~~~~~~q~~~p~~~~lI~s~~~  108 (119)
T cd08058          76 TFT-AWLSSVDIHTQASYQLMLPEAIAIVVSPKH  108 (119)
T ss_pred             CCC-CccCHHHHHHHHHHhccCCCeEEEEECcCC
Confidence            544 556665544333334456899999998866

This family contains eukaryotic MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains found in proteins with a variety of functions, including AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM), H2A-DUB (histone H2A deubiquitinase), BRCC36 (BRCA1/BRCA2-containing complex subunit 36), as well as Rpn11 (regulatory particle number 11) and CSN5 (COP9 signalosome complex subunit 5). These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology. CSN5 is critical for nuclear export and the degradation of several tumor suppressor prot

>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Probab=98.64  E-value=4.8e-07  Score=74.51  Aligned_cols=110  Identities=20%  Similarity=0.190  Sum_probs=80.2

Q ss_pred             eEEeHHHHHHHHhhhhc--CCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhH--HHHHHHHHHHHhh-hCCce
Q 032531            6 YELSQNAYIKLVLHARK--HKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPN--LEISLIMIEEHYS-AQGLG   80 (139)
Q Consensus         6 v~is~~AY~K~iLHAaK--yP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPm--lEvAL~~id~~~~-~~~l~   80 (139)
                      |.|.+.+..||+=|.-+  .....|.|.|||...+   +.++|+||.|+=|....-...  .|-...+.+.+-+ ..+..
T Consensus         1 v~ihPlVll~I~dH~~R~~~~~~~V~G~LLG~~~~---~~veItnsF~~p~~~~~~~~~~d~~y~~~m~~~~kkv~~~~~   77 (265)
T cd08064           1 VRVHPVVLFSILDSYERRNEGQERVIGTLLGTRSE---GEVEITNCFAVPHNESEDQVAVDMEYHRTMYELHQKVNPKEV   77 (265)
T ss_pred             CEEccHHHHhHHHHHhhhcCCCcEEEEEEEEEEeC---CEEEEEeCeecceeCCCCeEEEcHHHHHHHHHHHHHhCCCCc
Confidence            47889999999999887  3347899999998765   489999999998853221111  2233444454432 36689


Q ss_pred             EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCC--CceEEEEeCCC
Q 032531           81 IVGYFHANERFDDLELDSIAKNIGNHICRYFP--QCAVLLITKSS  123 (139)
Q Consensus        81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~--~a~ll~vDn~k  123 (139)
                      +||||+...     .+++....|-+.+.+..+  +++.+++|...
T Consensus        78 vVGWY~tg~-----~~~~~~~~Ih~~~~~~~~~~~pI~L~~D~~~  117 (265)
T cd08064          78 IVGWYATGS-----EITEHSALIHDYYSRECTSYNPIHLTVDTSL  117 (265)
T ss_pred             EEeeeeCCC-----CCCccHHHHHHHHHhhCCCCCCEEEEEeCCC
Confidence            999999875     344556678888888777  89999999876

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap

>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6

Probab=98.49  E-value=1.6e-06  Score=72.24  Aligned_cols=112  Identities=19%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             eeEEeHHHHHHHHhhhhcCC------CCeeeEEEeeecCCCCCceeEEEeceeccccccC---chhHHHHHHHHHHHHhh
Q 032531            5 KYELSQNAYIKLVLHARKHK------TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG---LLPNLEISLIMIEEHYS   75 (139)
Q Consensus         5 ~v~is~~AY~K~iLHAaKyP------~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~---LsPmlEvAL~~id~~~~   75 (139)
                      .|.+.+.+..+|.=|..+..      ...|.|.|||...+   +.++|++++|+-|..-.   ...=.|---.+.+.|-+
T Consensus         2 ~V~lHPlVll~I~dH~~R~~~~~~~~~~~v~G~LLG~~~~---~~veItnsF~~p~~~~~~~~~~id~~y~~~m~~~~kk   78 (288)
T cd08063           2 SVKLHPLVILNISDHITRHRAQSQSEPPRVVGALLGQQDG---REIEIENSFELKYDTNEDGEIVLDKEFLETRLEQFKQ   78 (288)
T ss_pred             eEEEecceeeeHHhhHhHHhccCCCCCCcEEEEEEEEEcC---CEEEEEEEEecccccCCCCceeeCHHHHHHHHHHHHH
Confidence            47888999999999998842      36899999997654   48999999999985322   11113333444454433


Q ss_pred             -hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           76 -AQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        76 -~~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                       -.+..|||||+....    .+.+....|-+.+.+.+++++++++|-..
T Consensus        79 V~~~~~vVGWY~tg~~----~~~~~~~~Ih~~~~~~~~~pv~L~~D~~~  123 (288)
T cd08063          79 VFKDLDFVGWYTTGPG----GPTESDLPIHKQILEINESPVLLLLDPEA  123 (288)
T ss_pred             hccCCceEEEEecCCC----CCCHHHHHHHHHHHhhCCCcEEEEEcccc
Confidence             256999999998644    46677788888888888889999999655

CSN6 (COP9 signalosome subunit 6; COP9 subunit 6; MOV34 homolog, 34 kD) is one of the eight subunits of COP9 signalosome, a highly conserved protein complex with diverse functions, including several important intracellular pathways such as the ubiquitin/proteasome system, DNA repair, cell cycle, developmental changes, and some aspects of immune responses. CSN6 is an MPN-domain protein that directly interacts with the MPN+-domain subunit CSN5. It is cleaved during apoptosis by activated caspases. CSN6 processing occurs in CSN/CRL (cullin-RING Ub ligase) complexes and is followed by the cleavage of Rbx1, the direct interaction partner of CSN6. CSN6 cleavage enhances CSN-mediated deneddylating activity (i.e. cleavage of ubiquitin-like protein Nedd8 (neural precursor cell expressed, developmentally downregulated 8)) in the cullin 1 in cells. The cleav

>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex

Probab=98.48  E-value=1e-05  Score=67.00  Aligned_cols=117  Identities=17%  Similarity=0.238  Sum_probs=78.3

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCC----CCCceeEEEeceecccc-----ccCchhHHHH-HHHHHHHHhh
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSP----QNDAVVEIADSVPLFHS-----HLGLLPNLEI-SLIMIEEHYS   75 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~----~~~~~v~i~DaVPLfH~-----~~~LsPmlEv-AL~~id~~~~   75 (139)
                      |.|+..+|.||+.||..==-..|+|+|+|+...    .....+.+...+|+-..     ...+.|--.+ |..+++.+.+
T Consensus         4 V~Is~~~l~~il~HA~~~~P~EvCGLL~G~~~~~~~~~~~~~v~i~~~~~~~~~~~s~~r~eidPee~~~a~~ea~~~~~   83 (244)
T cd08068           4 VHLSADVYLVCLTHALSTEKEEVMGLLIGEIEVSKKGEEVAIVHISAVIILRRSDKRKDRVEISPEQLSAASTEAERLTE   83 (244)
T ss_pred             EEECHHHHHHHHHHHHhCCCcceeEEEEeecccccccccceeEEEeeeccccccCCCCceEEeCHHHHHHHHHHHHHHHh
Confidence            789999999999999986558999999997642    01135556577776322     2345676443 5555665444


Q ss_pred             h--CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           76 A--QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        76 ~--~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      .  .|+.+|||||...... ..||.+-.+-...-+...|..+-++++-..
T Consensus        84 ~~~rgl~vVGwYHSHP~~~-a~PS~~Dv~tq~~~q~~~p~~v~lIvS~~~  132 (244)
T cd08068          84 ETGRPMRVVGWYHSHPHIT-VWPSHVDVRTQAMYQMMDSGFVGLIFSCFN  132 (244)
T ss_pred             hccCCceEEEEEecCCCCC-CCCCHhHHHHHHHHHhhCCCcEEEEEEecC
Confidence            3  7899999999986555 567766555333333344777777776544

BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai

>PLN03246 26S proteasome regulatory subunit; Provisional

Probab=98.42  E-value=4.8e-06  Score=70.60  Aligned_cols=110  Identities=16%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             eEEeHHHHHHHHhhhhcCCC---CeeeEEEeeecCCCCCceeEEEeceeccccccCchh---H--HHHHHHHHHHHhh-h
Q 032531            6 YELSQNAYIKLVLHARKHKT---AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP---N--LEISLIMIEEHYS-A   76 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~---~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP---m--lEvAL~~id~~~~-~   76 (139)
                      |.+.+.+..+|+=|.-+...   ..|.|.|||...+   +.++|++|.|+-|..-.=.+   .  .+-...+.+.+-+ .
T Consensus         8 V~vhPlVll~I~dh~~R~~~~~~~rviG~LLG~~~~---~~ieItnsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~k~V~   84 (303)
T PLN03246          8 VVVHPLVLLSIVDHYNRVAKDTRKRVVGVLLGSSFR---GRVDVTNSFAVPFEEDDKDPSIWFLDHNYLESMFGMFKRIN   84 (303)
T ss_pred             EEECcHHHHHHHHHHHhccCCCCCeeEEEEEeeecC---CEEEEEeccccCcccCCCCccceeecHHHHHHHHHHHHHhC
Confidence            88999999999999988774   4599999998754   48999999999885321111   1  2334455555443 2


Q ss_pred             CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           77 QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        77 ~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      .+..+||||+....+     ++....|=+-+.+.++++++++||-..
T Consensus        85 ~~~~vVGWY~tg~~i-----~~~d~~IH~~~~~~~~~Pv~L~vD~~~  126 (303)
T PLN03246         85 AKEHVVGWYSTGPKL-----RENDLDIHELFNDYVPNPVLVIIDVQP  126 (303)
T ss_pred             CCCcEEeeecCCCCC-----CcchHHHHHHHHhhCCCCeEEEEecCC
Confidence            568999999976443     344567777888889999999998644

>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family

Probab=98.23  E-value=3.9e-05  Score=60.13  Aligned_cols=110  Identities=14%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             eEEeHHHHHHHHhhhhcC-C-CCeeeEEEeeecCCCCCceeEEEece-eccccccC-chhHHHHHHHHHHHHhhhCCceE
Q 032531            6 YELSQNAYIKLVLHARKH-K-TAAVNGVLLGRVSPQNDAVVEIADSV-PLFHSHLG-LLPNLEISLIMIEEHYSAQGLGI   81 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKy-P-~~aVnGvLlG~~~~~~~~~v~i~DaV-PLfH~~~~-LsPmlEvAL~~id~~~~~~~l~I   81 (139)
                      +.|+...|-|++-||-+- | -..|+|+|.|+..+   +...|++.+ |--...-. ..++=+   .++..+++..|+.+
T Consensus         4 l~Ipk~il~~~l~~A~~~~~~p~E~cGlL~G~~~~---~~~~I~~i~~~~q~~~~~~~~~~~~---~e~~~~~~~~gle~   77 (173)
T cd08066           4 VVVPADLMDKFLQLAEPNTSRNLETCGILCGKLSN---NAFFITHLIIPKQSGTSDSCQTTNE---EELFDFQDQHDLIT   77 (173)
T ss_pred             EEECHHHHHHHHHHHHhCCCCCCeEEEEEEeEcCC---CeEEEEEEEeccccCCCceecCCCH---HHHHHHHHhCCCee
Confidence            789999999999999875 3 48899999997644   255666663 32111110 111111   12445677899999


Q ss_pred             EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCC
Q 032531           82 VGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKS  122 (139)
Q Consensus        82 vGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~  122 (139)
                      +||||.... ....||+.-.+.-.+.....|+++.++++..
T Consensus        78 vGwyHSHP~-~~~~pS~~Dv~t~~~~~~~~p~~~~lIvSp~  117 (173)
T cd08066          78 LGWIHTHPT-QTCFLSSVDLHTHCSYQLMLPEAIAIVCAPK  117 (173)
T ss_pred             EEEEeccCC-CCCccCHHHHHHHHHHHhcCCCeEEEEECCC
Confidence            999999644 3467888888877787788899999998753

AMSH (associated molecule with the Src homology 3 domain (SH3) of STAM (signal-transducing adapter molecule, also known as STAMBP)) and AMSH-like proteins (AMSH-LP) are members of JAMM/MPN+ deubiquitinases (DUBs), with Zn2+-dependent ubiquitin isopeptidase activity. AMSH specifically cleaves Lys 63 and not Lys48-linked polyubiquitin (poly-Ub) chains, thus facilitating the recycling and subsequent trafficking of receptors to the cell surface. AMSH and AMSH-LP are anchored on the early endosomal membrane via interaction with the clathrin coat. AMSH shares a common SH3-binding site with another endosomal DUB, UBPY (ubiquitin-specific protease Y; also known as USP8), the latter being a cysteine protease that does not discriminate between Lys48 and Lys63-linked ubiquitin. AMSH is involved in the degradation of EGF receptor (EGFR) and possibly other ubiquitinated endocytosed proteins. AMSH also interacts with CHMP1, CHMP2, and CHMP3 proteins, al

>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.95  E-value=9e-05  Score=63.30  Aligned_cols=111  Identities=19%  Similarity=0.308  Sum_probs=73.9

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHH-HHHHHHHH---hhhCC--c
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEI-SLIMIEEH---YSAQG--L   79 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEv-AL~~id~~---~~~~~--l   79 (139)
                      |.||..|..||+.||-.=-.-.|-|++.|+..++   +++|-|+.-|=-.-+-...-.+. |.+-.=.|   |+.-|  .
T Consensus        55 vkISalAllKm~~hA~~GgnlEiMGlm~Gkv~g~---t~IvmD~FaLPVeGTETRVNAq~~AyEYmv~Y~e~~k~~gr~e  131 (347)
T KOG1554|consen   55 VKISALALLKMVMHARSGGNLEIMGLMQGKVDGD---TIIVMDSFALPVEGTETRVNAQAEAYEYMVQYIEEAKNVGRLE  131 (347)
T ss_pred             hhhHHHHHHHHHHHHhcCCCeEEEeeecccccCC---eEEEEeccccccccccceechHHHHHHHHHHHHHHHHHhhhhh
Confidence            7899999999999999999999999999987664   89999998553333333322222 22222222   33333  6


Q ss_pred             eEEEEEEeCCCCC--CCCCCHHHHHHHHHHHhhCCCc-eEEEEeCCC
Q 032531           80 GIVGYFHANERFD--DLELDSIAKNIGNHICRYFPQC-AVLLITKSS  123 (139)
Q Consensus        80 ~IvGyY~Ane~~~--d~~~~~~a~kIa~kI~~~~~~a-~ll~vDn~k  123 (139)
                      .+|||||.....+  =+..+--.++.-.    .|.++ +.++||..+
T Consensus       132 nvVGWyHSHPgYgCWLSgIDVsTQ~lNQ----~fQePfvAvViDP~R  174 (347)
T KOG1554|consen  132 NVVGWYHSHPGYGCWLSGIDVSTQMLNQ----RFQEPFVAVVIDPTR  174 (347)
T ss_pred             ceeeeeecCCCCCccccCcchhHHHHhh----hhcCCeEEEEecCcc
Confidence            7999999987554  1233333444444    45554 568899988

>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)

Probab=97.65  E-value=0.00058  Score=50.03  Aligned_cols=98  Identities=15%  Similarity=0.305  Sum_probs=64.2

Q ss_pred             HHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceec--cccc----cCchhHHHHHHHHHHHHhhhCCceEEEE
Q 032531           11 NAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPL--FHSH----LGLLPNLEISLIMIEEHYSAQGLGIVGY   84 (139)
Q Consensus        11 ~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPL--fH~~----~~LsPmlEvAL~~id~~~~~~~l~IvGy   84 (139)
                      ..+-+|+-||.+-.-..++|+|+|+....   ...|++.+|+  .+..    ..+.|.   .+..+....+++|+.++|.
T Consensus         2 ~~~~~il~ha~~~~P~E~cGlL~G~~~~~---~~~i~~~~p~~n~~~~~~~~f~~d~~---~~~~~~~~~~~~g~~~vG~   75 (128)
T cd08070           2 ELLEAILAHAEAEYPEECCGLLLGKGGGV---TAIVTEVYPVRNVAESPRRRFEIDPA---EQLAAQREARERGLEVVGI   75 (128)
T ss_pred             HHHHHHHHHHHhCCCCceEEEEEeecCCC---CceEEEEEEccCCCCCCCceEEECHH---HHHHHHHHHHHCCCeEEEE
Confidence            45779999999966688999999986543   3456888887  2221    123443   3345567778899999999


Q ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEe
Q 032531           85 FHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT  120 (139)
Q Consensus        85 Y~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vD  120 (139)
                      ||...... ..||..-.+.+     ..+....+++.
T Consensus        76 ~HSHP~~~-~~PS~~D~~~~-----~~~~~~~lIv~  105 (128)
T cd08070          76 YHSHPDGP-ARPSETDLRLA-----WPPGVSYLIVS  105 (128)
T ss_pred             EeCCCCCC-CCCCHHHHHhc-----cCCCCeEEEEE
Confidence            99986543 45665443333     23345555554

This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A

Probab=97.00  E-value=0.0075  Score=41.84  Aligned_cols=78  Identities=23%  Similarity=0.263  Sum_probs=51.4

Q ss_pred             HHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHH-HhhhCCceEEEEEEeC
Q 032531           10 QNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEE-HYSAQGLGIVGYFHAN   88 (139)
Q Consensus        10 ~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~-~~~~~~l~IvGyY~An   88 (139)
                      .+++.+|+-|+...+....+|+|+|+...   ....+++.++       ..|--+.+   ... .....++.++|.||..
T Consensus         2 ~~~~~~i~~~~~~~~p~E~~G~L~g~~~~---~~~~~~~~~~-------~~p~~~~~---~~~~~~~~~~~~~vg~~HSH   68 (104)
T PF14464_consen    2 EEVLEQIIAHARAAYPNEACGLLLGRRDD---QRFIVVPNVN-------PDPRDSFR---RERFEARERGLEIVGIWHSH   68 (104)
T ss_dssp             -HHHHHHHHHHHHHTTS-EEEEEEEEEEC---CEEEEEEEEE---------HHCHHH---HHH-HHHHHT-EEEEEEEEE
T ss_pred             HHHHHHHHHHHhhCCCCeEEEEEEEEecC---CEEEEEeCCC-------CCcHHHHH---HHhhhhhcccceeeEEEEcC
Confidence            46889999999999999999999998733   4677777777       22222222   222 5677999999999997


Q ss_pred             CCCCCCCCCHHHH
Q 032531           89 ERFDDLELDSIAK  101 (139)
Q Consensus        89 e~~~d~~~~~~a~  101 (139)
                      .... ..||..-.
T Consensus        69 P~~~-a~pS~~D~   80 (104)
T PF14464_consen   69 PSGP-AFPSSTDI   80 (104)
T ss_dssp             SSSS-SS--HHHH
T ss_pred             CCCC-CCCCHHHH
Confidence            6544 25554433

>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.015  Score=49.23  Aligned_cols=108  Identities=21%  Similarity=0.340  Sum_probs=66.0

Q ss_pred             eEEeHHHHHHHHhhh---hcCCCCeeeEEEeeecCCCCCceeEEEe--ceecc------ccccCchhHHHHHHHHHHHHh
Q 032531            6 YELSQNAYIKLVLHA---RKHKTAAVNGVLLGRVSPQNDAVVEIAD--SVPLF------HSHLGLLPNLEISLIMIEEHY   74 (139)
Q Consensus         6 v~is~~AY~K~iLHA---aKyP~~aVnGvLlG~~~~~~~~~v~i~D--aVPLf------H~~~~LsPmlEvAL~~id~~~   74 (139)
                      |.+.+.-..-.+=|=   +|--...|-|+|||...+   +.+-|+.  |||.=      -.|+-=.-.+|--..+.-.- 
T Consensus        11 ViVhPLVLLS~VDhynR~~k~~~KRvvGvLLG~~~~---~~i~vtnSfAvpFeEDdk~~svWFlDh~Y~esM~~mfkKv-   86 (309)
T KOG1556|consen   11 VIVHPLVLLSAVDHYNRVGKDTNKRVVGVLLGSWNG---DVIDVTNSFAVPFEEDDKDKSVWFLDHNYIESMFGMFKKV-   86 (309)
T ss_pred             eeeehhHHHHHHHHHhhhccCcCceEEEEEEecCCC---CeEEeecceeccccccCCCCceEEeccHHHHHHHHHHHHh-
Confidence            444555544444443   344448899999997544   3677765  44541      00211122333322221111 


Q ss_pred             hhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           75 SAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        75 ~~~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                       ..+..||||||.-.++..+.+     .|-+-+.+++|+++|++||-+.
T Consensus        87 -NakekivGWYhTGPkl~~nDl-----~In~l~k~y~pnpvLvIIdvkp  129 (309)
T KOG1556|consen   87 -NAKEKVVGWYHTGPKLRENDL-----DINELLKRYVPNPVLVIIDVKP  129 (309)
T ss_pred             -cchhheeeeeccCCccccchh-----hHHHHHhhcCCCceEEEEeccc
Confidence             245889999999887776654     5888899999999999999876

>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme

Probab=96.03  E-value=0.051  Score=39.77  Aligned_cols=91  Identities=12%  Similarity=0.118  Sum_probs=54.8

Q ss_pred             EeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhH--HHHHHHHHHHHhhhCCceEEEEE
Q 032531            8 LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPN--LEISLIMIEEHYSAQGLGIVGYF   85 (139)
Q Consensus         8 is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPm--lEvAL~~id~~~~~~~l~IvGyY   85 (139)
                      |+...+-.|+-||.+-.-..++|+|+|+.+       .|++..|+==.... .+.  +++       .....|+.|+|.|
T Consensus         1 i~~~~~~~i~~ha~~~~P~E~CGlL~G~~~-------~v~~~~~~~n~~~~-~~~~~f~~-------~~~~~g~~ivgi~   65 (117)
T cd08072           1 ISRDLLDSILEAAKSSHPNEFAALLRGKDG-------VITELLILPGTESG-EVSAVFPL-------LMLPLDMSIVGSV   65 (117)
T ss_pred             CCHHHHHHHHHHHhhcCCceEEEEEEeecc-------EEEEEEECCCCCCC-Ccceeech-------HHhcCCCeEEEEE
Confidence            456788999999996655788899999531       45666654211110 111  111       1346899999999


Q ss_pred             EeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEE
Q 032531           86 HANERFDDLELDSIAKNIGNHICRYFPQCAVLLI  119 (139)
Q Consensus        86 ~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~v  119 (139)
                      |....- ...||+.-.+.+     ..++..-+++
T Consensus        66 HSHP~~-~~~PS~~D~~~~-----~~~~~~~lIv   93 (117)
T cd08072          66 HSHPSG-SPRPSDADLSFF-----SKTGLVHIIV   93 (117)
T ss_pred             EcCCCC-CCCCCHHHHHhh-----hcCCCEEEEE
Confidence            997542 355665543333     2355555554

This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]

Probab=95.58  E-value=0.23  Score=36.52  Aligned_cols=88  Identities=15%  Similarity=0.175  Sum_probs=56.0

Q ss_pred             EEeHHHHHHHHhhhhcC-CCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceEEEEE
Q 032531            7 ELSQNAYIKLVLHARKH-KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYF   85 (139)
Q Consensus         7 ~is~~AY~K~iLHAaKy-P~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~IvGyY   85 (139)
                      .|+....-+|+-||.+- | ..+.|+|.|+..+.....+..++.-|..+.  -..|+..+    ....+...|+.+||+|
T Consensus         3 ~i~~~~l~~il~~a~~~~p-~E~~g~l~~~~~~~~~~~~~n~~~~~~~~~--~~~~~~~~----~~~~~~~~g~~vvg~y   75 (134)
T COG1310           3 VIPKEVLGAILEHARREHP-REVCGLLAGTREGERYFPLKNVSVEPVEYF--EIDPEYSL----FYLAAEDAGEVVVGWY   75 (134)
T ss_pred             eecHHHHHHHHHHHHhcCC-hheEEEEEeecccceeeccccccCCcceeE--eeCHHHHH----HHHHHhhCCCEEEEEE
Confidence            57788888899998765 6 999999999754410012334444454443  34565544    2444677889999999


Q ss_pred             EeCCCCCCCCCCHHHHH
Q 032531           86 HANERFDDLELDSIAKN  102 (139)
Q Consensus        86 ~Ane~~~d~~~~~~a~k  102 (139)
                      |...... ..||..-.+
T Consensus        76 HSHP~~~-~~pS~~D~~   91 (134)
T COG1310          76 HSHPGGP-PYPSEADRR   91 (134)
T ss_pred             cCCCCCC-CCcCHHHHh
Confidence            9875433 345544333

>KOG2975 consensus Translation initiation factor 3, subunit f (eIF-3f) [Translation, ribosomal structure and biogenesis]

Probab=94.80  E-value=0.19  Score=42.76  Aligned_cols=110  Identities=20%  Similarity=0.241  Sum_probs=81.3

Q ss_pred             eEEeHHHHHHHHhhhhcCCC--CeeeEEEeeecCCCCCceeEEEeceecccccc--CchhHHHHHHHHHHHHhhh-CCce
Q 032531            6 YELSQNAYIKLVLHARKHKT--AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHL--GLLPNLEISLIMIEEHYSA-QGLG   80 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~--~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~--~LsPmlEvAL~~id~~~~~-~~l~   80 (139)
                      +.+.+.-|.-++=|--+.|.  ..|.|-|||..+++   .|+|+.|.-.=|--.  .+.-=+|-|..+.|.+-+. .+-+
T Consensus        23 v~ihP~Vlf~ivD~~~RR~~~~~rviGTLLG~~~~g---~ieitNCFaVPhnEssdqvevdm~y~~~M~~l~~k~npnE~   99 (288)
T KOG2975|consen   23 VRLHPVVLFSIVDAYERRNKGAERVIGTLLGTVDKG---SVEVTNCFAVPHNESSDQVEVDMEYAKNMYELHKKVNPNEL   99 (288)
T ss_pred             EEEcceEEeEeehhhhcCCccchhhhhheeecccCC---eEEEEEeeeccCccccccceeeHHHHHHHHHHhcccCCCce
Confidence            55555555555555556665  56999999987754   899999887766533  3455567788888888764 5699


Q ss_pred             EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           81 IVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      |||||--.     .+++..+.-|-|-.++.+++.+-+.||-.-
T Consensus       100 vvGWyaTg-----~dvt~~sslihdyYare~~~pvhLtVDT~~  137 (288)
T KOG2975|consen  100 VVGWYATG-----HDVTEHSSLIHDYYAREAPNPVHLTVDTSL  137 (288)
T ss_pred             eEEEEecC-----CCcccchhHHHHHhhccCCCCeEEEEeccc
Confidence            99999854     334556678888889999999999998765

>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=0.11  Score=44.75  Aligned_cols=114  Identities=14%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             eEEeHHHHHHHHhhh-hcCCCCeeeEEE-eeec---CCCCCceeEEEe---ceeccccccCchhHHHHHH-HHHHHHhhh
Q 032531            6 YELSQNAYIKLVLHA-RKHKTAAVNGVL-LGRV---SPQNDAVVEIAD---SVPLFHSHLGLLPNLEISL-IMIEEHYSA   76 (139)
Q Consensus         6 v~is~~AY~K~iLHA-aKyP~~aVnGvL-lG~~---~~~~~~~v~i~D---aVPLfH~~~~LsPmlEvAL-~~id~~~~~   76 (139)
                      +.++..|-.||..|+ ++=|...|.|++ +|+.   -..  -++.++|   .-+-+=....+.|-+.-.. +|.....+.
T Consensus        33 v~i~slall~m~rh~r~~~p~e~v~Glm~lg~~~~fv~~--~Tv~vv~v~am~~sg~~is~~~e~~d~V~q~q~~~~l~~  110 (316)
T KOG1555|consen   33 VYISSLALLKMLRHDRAGSPEETVMGLMSLGRLPEFVDD--YTVRVVDVFAMPQSGTGISKFVEAVDPVFQTQMMDLLKQ  110 (316)
T ss_pred             eeeehhhhhhcccccccCCchhhccceeecccccceeee--cceeeeeeeccccccceecccchhccHHHHHHHHHHHHh
Confidence            789999999999997 467777799999 9932   111  2333444   3322222111123222222 444555555


Q ss_pred             CC--ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCC
Q 032531           77 QG--LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKS  122 (139)
Q Consensus        77 ~~--l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~  122 (139)
                      .|  +.+|||||....+. ..|+.+-..--..-+..++.++..+||-.
T Consensus       111 tGrp~~VVGWYHSHP~f~-~wpS~vDi~tQ~syq~~~~r~~a~~v~~i  157 (316)
T KOG1555|consen  111 TGRPELVVGWYHSHPGFG-CWPSLVDIDTQQSYQALSSRAVAVVVDPI  157 (316)
T ss_pred             cCCcceEEeeccCCCCCC-CCccccchhHHHHHhhhccCCcceeeecc
Confidence            55  55999999998877 44554444444444455777777777653

>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family

Probab=93.60  E-value=1.1  Score=33.97  Aligned_cols=90  Identities=18%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             CeeeEEEeeecCCCCCceeEEEeceecccc----ccCchhHHHHHHHHHHHHhh-hCC-ceEEEEEEeCCCCCCCCCCHH
Q 032531           26 AAVNGVLLGRVSPQNDAVVEIADSVPLFHS----HLGLLPNLEISLIMIEEHYS-AQG-LGIVGYFHANERFDDLELDSI   99 (139)
Q Consensus        26 ~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~----~~~LsPmlEvAL~~id~~~~-~~~-l~IvGyY~Ane~~~d~~~~~~   99 (139)
                      ..-.|+|+|+..+   ..+.|+|+.+=-..    ....-+=-+-.-.+++.+.+ ++| +.-+|-+|....... .||..
T Consensus        17 ~EtGGiLiG~~~~---~~~ii~~~t~P~p~d~~tr~~F~r~~~~~q~~i~~~~~~s~g~~~ylGeWHtHP~~~p-~PS~~   92 (131)
T TIGR02256        17 TETGGVLIGERRG---AHAVITKISEPGSGDIRTRKRFSRDGEHHQSEVDEHFEVSGGVDTYLGEWHTHPEDQP-EPSWT   92 (131)
T ss_pred             CccceEEEEEEcC---CcEEEEEEEcCCCCcccCceEEEeCcHHHHHHHHHHHHHhCCceEEEEecCcCCCCCC-CCCHH
Confidence            4789999998764   37888888842221    11222222333345566554 444 889999999766553 79999


Q ss_pred             HHHHHHHHHhhCCCceEEEE
Q 032531          100 AKNIGNHICRYFPQCAVLLI  119 (139)
Q Consensus       100 a~kIa~kI~~~~~~a~ll~v  119 (139)
                      -.+-..++.+.....++|++
T Consensus        93 D~~~~~~~~~~~~~~l~iIv  112 (131)
T TIGR02256        93 DRRSWRTIIRSPEAMLLLIV  112 (131)
T ss_pred             HHHHHHHHHhCCCeeEEEEE
Confidence            99999999887554333444

This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.

>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic

Probab=93.48  E-value=0.93  Score=31.51  Aligned_cols=81  Identities=12%  Similarity=0.166  Sum_probs=53.7

Q ss_pred             HHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceEEEEEEeCCCCC
Q 032531           13 YIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFD   92 (139)
Q Consensus        13 Y~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~IvGyY~Ane~~~   92 (139)
                      |-.|.-|+.+-....+.|+|+|+..+      .+....++.=.....+|.-       +..+...|..+||.||.... .
T Consensus         3 ~~~i~~~~~~~~p~E~~gll~~~~~~------~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~v~i~HsHP~-g   68 (101)
T cd08059           3 LKTILVHAKDAHPDEFCGFLSGSKDN------VMDELIFLPFVSGSVSAVI-------DLAALEIGMKVVGLVHSHPS-G   68 (101)
T ss_pred             HHHHHHHHHhcCChhhheeeecCCCC------eEEEEEeCCCcCCccChHH-------HHHHhhCCCcEEEEEecCcC-C
Confidence            44566777777456788999996321      3455566654444556653       55677899999999998754 3


Q ss_pred             CCCCCHHHHHHHHHH
Q 032531           93 DLELDSIAKNIGNHI  107 (139)
Q Consensus        93 d~~~~~~a~kIa~kI  107 (139)
                      +..||..-.+.+.++
T Consensus        69 ~~~PS~~D~~~~~~~   83 (101)
T cd08059          69 SCRPSEADLSLFTRF   83 (101)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            466777666655544

This family contains bacterial and archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These catalytically active domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]

Probab=93.23  E-value=1  Score=38.88  Aligned_cols=111  Identities=20%  Similarity=0.212  Sum_probs=72.1

Q ss_pred             eEEeHHHHHHHHhhhhcCCC--CeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHH-----------HHHHHH
Q 032531            6 YELSQNAYIKLVLHARKHKT--AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEIS-----------LIMIEE   72 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~--~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvA-----------L~~id~   72 (139)
                      |++...--.||+-|+-.--+  ..+-|+|+|=.-+   +.++|+.|.|.--. +   ||=+=|           ..|.+.
T Consensus        15 v~ldsLvVMkiiKHc~ee~~n~d~~~GvL~Glvvd---~~LeITncFp~p~~-~---~~edda~~~~~~de~rq~~~l~m   87 (339)
T KOG1560|consen   15 VELDSLVVMKIIKHCREEFPNGDGTQGVLLGLVVD---GRLEITNCFPFPSV-L---ENEDDAVNKSVSDEARQAYQLAM   87 (339)
T ss_pred             eeehhHHHHHHHHHHHhhcCCcchhhheeeeeeec---ceeEeecccCCCcc-C---CCccchhhhhhhHHHHHHHHHHH
Confidence            78889999999999865433  6899999996543   48999999996432 2   332222           111111


Q ss_pred             H--hh--hCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC-CC
Q 032531           73 H--YS--AQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS-KP  125 (139)
Q Consensus        73 ~--~~--~~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k-~~  125 (139)
                      .  .+  .-+.-+|||||...--  +.+++.--.-.=..+...|+.++++.|..| .+
T Consensus        88 lrrlr~vnid~~hVGwYqs~~vg--s~lS~~lveSqy~YQ~a~pesVvliYD~~kssq  143 (339)
T KOG1560|consen   88 LRRLRYVNIDHLHVGWYQSAYVG--SFLSPALVESQYAYQKAIPESVVLIYDPIKSSQ  143 (339)
T ss_pred             HHHhhhcCccceeeeeeeeehhc--cccCHHHHHHHHHHHhcCCccEEEEeccccccC
Confidence            1  01  1346699999985432  345544333344456678899999999988 44

>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains

Probab=84.31  E-value=9.4  Score=27.45  Aligned_cols=85  Identities=13%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             HHHHHhhh-hcCCCCeeeEEEeeecCCCCCceeEEEeceecc---c---cccCchhHHHHHHHHHHHHhhhCCceEEEEE
Q 032531           13 YIKLVLHA-RKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLF---H---SHLGLLPNLEISLIMIEEHYSAQGLGIVGYF   85 (139)
Q Consensus        13 Y~K~iLHA-aKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLf---H---~~~~LsPmlEvAL~~id~~~~~~~l~IvGyY   85 (139)
                      |-.|+-|| ..|| ...+|+|+|+..        ++..+|+=   .   ....+.|.-.++.   +    +.+ .|+|.|
T Consensus         3 ~~~i~~ha~~~~P-~E~CGll~g~~~--------~~~~~p~~N~~~~p~~~F~idp~e~~~a---~----~~~-~ivgi~   65 (108)
T cd08073           3 EDAILAHAKAEYP-REACGLVVRKGR--------KLRYIPCRNIAADPEEHFEISPEDYAAA---E----DEG-EIVAVV   65 (108)
T ss_pred             HHHHHHHHhHCCC-CcceEEEEecCC--------ceEEEECccCCCCccceEEeCHHHHHHH---h----cCC-CEEEEE
Confidence            56788899 6777 556699999641        12234542   1   1123455433321   1    233 899999


Q ss_pred             EeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEe
Q 032531           86 HANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT  120 (139)
Q Consensus        86 ~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vD  120 (139)
                      |.... ....||..-.+     ....++..-+++.
T Consensus        66 HSHP~-~~a~PS~~D~~-----~~~~~~~~~iIvs   94 (108)
T cd08073          66 HSHPD-GSPAPSEADRA-----QQEATGLPWIIVS   94 (108)
T ss_pred             EcCCC-CCCCCCHHHHH-----HhhcCCCcEEEEE
Confidence            99754 23456654322     2233555555554

This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.

>KOG3050 consensus COP9 signalosome, subunit CSN6 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.34  E-value=6.5  Score=33.51  Aligned_cols=85  Identities=21%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             CeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHH----HHHHHHHHhhh--CCceEEEEEEeCCCCCCCCCCHH
Q 032531           26 AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEI----SLIMIEEHYSA--QGLGIVGYFHANERFDDLELDSI   99 (139)
Q Consensus        26 ~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEv----AL~~id~~~~~--~~l~IvGyY~Ane~~~d~~~~~~   99 (139)
                      ..|.|.|||++.+   ..|+|-...-|.-...   -+-|+    =|.+=++.+++  ..+.++|||.+-+.     +.|-
T Consensus        37 ~~VyGaliG~Q~G---R~vEi~NSFeL~~d~~---~~~~~~dke~l~kk~eqykqVFpdl~vlGwYttG~d-----~t~s  105 (299)
T KOG3050|consen   37 KQVYGALIGKQRG---RNVEIMNSFELKMDTE---EDTETIDKEYLEKKEEQYKQVFPDLYVLGWYTTGSD-----PTPS  105 (299)
T ss_pred             HHhhhhheecccC---ceEEEeeeeEEEecch---hhhhhccHHHHHHHHHHHHHhcccceEEEEeecCCC-----CChh
Confidence            4899999998655   5899988887643311   12221    12222222222  67999999997532     2344


Q ss_pred             HHHHHHHHHhhCCCceEEEEeC
Q 032531          100 AKNIGNHICRYFPQCAVLLITK  121 (139)
Q Consensus       100 a~kIa~kI~~~~~~a~ll~vDn  121 (139)
                      -..|-.+|.+-...++.+.++.
T Consensus       106 d~~i~k~l~~i~esplflkLNp  127 (299)
T KOG3050|consen  106 DIHIHKQLMDINESPLFLKLNP  127 (299)
T ss_pred             hhHHHHHHHhhhcCceEEEecc
Confidence            4556666655555566666643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2o95_A	187	26S proteasome non-ATPase regulatory subunit 7; PS	99.79
4e0q_A	141	COP9 signalosome complex subunit 6; MPN (MPR1P and	99.21
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	99.12
2znr_A	178	AMSH-like protease; metal binding protein, alterna	98.63
3rzv_A	211	STAM-binding protein; ubiquitin hydrolase, endosom	98.25
4b4t_U	338	RPN8, 26S proteasome regulatory subunit RPN8; hydr	98.22
2kks_A	146	Uncharacterized protein; NESG, structural genomics	98.15
2kcq_A	153	MOV34/MPN/PAD-1 family; NESG, structure, structura	98.14
1oi0_A	124	AF2198, hypothetical protein AF2198; proteasome, d	97.83

>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A

Probab=99.79  E-value=3.8e-19  Score=137.01  Aligned_cols=110  Identities=19%  Similarity=0.248  Sum_probs=93.8

Q ss_pred             eEEeHHHHHHHHhhhhcCC----CCeeeEEEeeecCCCCCceeEEEeceeccccccCchh---HH--HHHHHHHHHHhhh
Q 032531            6 YELSQNAYIKLVLHARKHK----TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP---NL--EISLIMIEEHYSA   76 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP----~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP---ml--EvAL~~id~~~~~   76 (139)
                      |+|++.++.||+.|+.|+|    ...|+|+|||+..+   +.+.|+||+||.|......|   ++  |....++|.+.+.
T Consensus        10 V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~---~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v   86 (187)
T 2o95_A           10 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQK---KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV   86 (187)
T ss_dssp             EEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESS---SEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred             EEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcC---CEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence            8999999999999999984    68999999998764   48999999999998766554   44  8888999998876


Q ss_pred             C-CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           77 Q-GLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        77 ~-~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      + ++.||||||+++..++.     ...|.+.+++.++++++|++|+.+
T Consensus        87 ~~~~~iVGWY~s~~~~s~~-----d~~i~~~~~~~~~~~v~Livd~~~  129 (187)
T 2o95_A           87 NARERIVGWYHTGPKLHKN-----DIAINELMKRYCPNSVLVIIDVKP  129 (187)
T ss_dssp             SSSCEEEEEEECCSSCCTT-----HHHHHHHHTTTCTTCEEEEECCCT
T ss_pred             CCCCCEEEEEcCCCcCCcc-----cHHHHHHHHhcCCCCEEEEECCCC
Confidence            6 89999999999877543     234788888999999999999977

>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}

Probab=99.21  E-value=1.8e-10  Score=86.17  Aligned_cols=112  Identities=16%  Similarity=0.199  Sum_probs=83.8

Q ss_pred             ceeEEeHHHHHHHHhhhhcC-----CCCeeeEEEeeecCCCCCceeEEEeceeccccccC--chhHHHHHHHHHHHHhhh
Q 032531            4 LKYELSQNAYIKLVLHARKH-----KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG--LLPNLEISLIMIEEHYSA   76 (139)
Q Consensus         4 M~v~is~~AY~K~iLHAaKy-----P~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~--LsPmlEvAL~~id~~~~~   76 (139)
                      ..|.|++.+..||+=|+.+-     ....|.|+|||...+   ..++|+||.|+-|....  ...-.|-...+.+.+-+-
T Consensus         6 ~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~---~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v   82 (141)
T 4e0q_A            6 VTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKG---RNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQV   82 (141)
T ss_dssp             EEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEET---TEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHH
T ss_pred             EEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeC---CEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHHh
Confidence            34899999999999999874     235799999998754   48999999999986321  233346666777776654


Q ss_pred             -CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           77 -QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        77 -~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                       .+..|||||+....     +++....|-+.+.+.++++++|++|..+
T Consensus        83 ~~~e~iVGWY~s~~~-----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~  125 (141)
T 4e0q_A           83 FSDLDFIGWYTTGDN-----PTADDIKIQRQIAAINECPIMLQLNPLS  125 (141)
T ss_dssp             STTCEEEEEEEEEC------------CHHHHHHHTTCCCEEEEESCSC
T ss_pred             CCCccEEEEEeCCCC-----CCcchHHHHHHHHHHCCCCEEEEECCCc
Confidence             56999999998653     4444457888888999999999999887

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.12  E-value=5.2e-10  Score=92.90  Aligned_cols=112  Identities=19%  Similarity=0.285  Sum_probs=85.1

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccC-----chhHHHHHHHHHHHHhhh--CC
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG-----LLPNLEISLIMIEEHYSA--QG   78 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~-----LsPmlEvAL~~id~~~~~--~~   78 (139)
                      |.||+.|..||+.||-.-....|.|+|||+..++  ..+.|+||+|+=|....     ..+..+.  .+ ....++  .+
T Consensus        27 V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~--~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~--~m-~~~~~~v~~~  101 (306)
T 4b4t_V           27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDD--YTVNVVDVFAMPQSGTGVSVEAVDDVFQA--KM-MDMLKQTGRD  101 (306)
T ss_dssp             EEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETT--TEEEEEEEECCCCEESSSCEECCCHHHHH--HH-HHHHHHHSCC
T ss_pred             EEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCC--eEEEEEEEEeCCcCCCCCchhcCCHHHHH--HH-HHHHHHhCCC
Confidence            8999999999999998877789999999975444  47999999999665332     2332221  12 223333  45


Q ss_pred             ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           79 LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        79 l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      ..+|||||....+. .-|+.+-.......+...+.++.|++|..+
T Consensus       102 ~~vVGWYhShP~~~-~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~  145 (306)
T 4b4t_V          102 QMVVGWYHSHPGFG-CWLSSVDVNTQKSFEQLNSRAVAVVVDPIQ  145 (306)
T ss_dssp             CCCSEEEEECCSSS-CCCCHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             cceeeEEecCCCCC-CcCCHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence            88999999987666 557888777777778889999999999877

>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A

Probab=98.63  E-value=2e-07  Score=71.90  Aligned_cols=111  Identities=13%  Similarity=0.081  Sum_probs=81.5

Q ss_pred             eEEeHHHHHHHHhhhhc-CCC-CeeeEEEeeecCCCCCceeEEEeceecccccc--CchhHHHHHHHHHHHHhhhCCceE
Q 032531            6 YELSQNAYIKLVLHARK-HKT-AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHL--GLLPNLEISLIMIEEHYSAQGLGI   81 (139)
Q Consensus         6 v~is~~AY~K~iLHAaK-yP~-~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~--~LsPmlEvAL~~id~~~~~~~l~I   81 (139)
                      |.|+...+.||+-||-. +|. ..|.|+|+|+..++   ...|++++|+=-...  ....+-+.  .+ -.+....|+.+
T Consensus        11 v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~---~~~V~~v~~~pq~~t~~~~~~~~~~--e~-~~~~~~~~l~~   84 (178)
T 2znr_A           11 VVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN---EFTITHVIVPKQSAGPDYCDMENVE--EL-FNVQDQHDLLT   84 (178)
T ss_dssp             EEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT---EEEEEEEEECCEEEETTEEEECCHH--HH-HHHHHHHTCEE
T ss_pred             EEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCC---CeEEEEEEeCCcCCCCCeeccCCHH--HH-HHHHHhCCCEE
Confidence            89999999999999986 575 78999999987543   678899987632111  11000011  11 12356789999


Q ss_pred             EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           82 VGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        82 vGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      |||||...... ..||+.-.....+.+...+.++.|++|-.+
T Consensus        85 vGwyHSHP~~~-~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~  125 (178)
T 2znr_A           85 LGWIHTHPTQT-AFLSSVDLHTHCSYQLMLPEAIAIVCSPKH  125 (178)
T ss_dssp             EEEEEECSSSC-SCCCHHHHHHHHHHHHHCTTCEEEEEEGGG
T ss_pred             EEEEeCCCCCC-CCCCHHHHHHHHHHHhhcCCEEEEEEcCCC
Confidence            99999976544 678988888888888889999999998765

>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A

Probab=98.25  E-value=5.9e-06  Score=65.76  Aligned_cols=109  Identities=15%  Similarity=0.131  Sum_probs=80.7

Q ss_pred             eEEeHHHHHHHHhhhhcC-CC-CeeeEEEeeecCCCCCceeEEEeceeccccccC----chhHHHHHHHHHHHHhhhCCc
Q 032531            6 YELSQNAYIKLVLHARKH-KT-AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG----LLPNLEISLIMIEEHYSAQGL   79 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKy-P~-~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~----LsPmlEvAL~~id~~~~~~~l   79 (139)
                      |.|+...+-|++-||-.. |. ..|.|+|+|+..+   +...|++++.+.-....    +....|    +. .|....++
T Consensus        44 v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~---~~~~I~~v~~ppq~gt~~~v~~~~~~e----~~-~~~~~~~l  115 (211)
T 3rzv_A           44 VVVPGRLCPQFLQLASANTARGVATCGILCGKLMR---NEFTITHVLIPKQSAGSDYCNTENEEE----LF-LIQDQQGL  115 (211)
T ss_dssp             EEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEET---TEEEEEEEEECCEEECSSCEEECCHHH----HH-HHHHHHTC
T ss_pred             EEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCC---CCEEEEEEEeCCccCCCCceeccChHH----HH-HHHhhCCC
Confidence            889999999999999884 53 7889999998754   36888998854322111    111111    11 23345899


Q ss_pred             eEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeCCC
Q 032531           80 GIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITKSS  123 (139)
Q Consensus        80 ~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn~k  123 (139)
                      .+|||||...... ..|++.-.....+++...+..+.|++|-.+
T Consensus       116 ~~vGWyHSHP~~~-~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~  158 (211)
T 3rzv_A          116 ITLGWIHTHPTQT-AFLSSVDLHTHCSYQMMLPESVAIVCSPKF  158 (211)
T ss_dssp             EEEEEEEECTTSC-SCCCHHHHHHHHHHHHHCTTCEEEEEETTT
T ss_pred             EEEEEEeCCCCCC-CCCCHHHHHHHHHHHhcCCCeEEEEEcCCC
Confidence            9999999865333 679999999999999999999999998765

>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.22  E-value=2.2e-05  Score=65.65  Aligned_cols=110  Identities=14%  Similarity=0.213  Sum_probs=76.8

Q ss_pred             eEEeHHHHHHHHhhhhc-C--CCCeeeEEEeeecCCCCCceeEEEeceeccccccCchh-----HHHHHHHHHHHHhh-h
Q 032531            6 YELSQNAYIKLVLHARK-H--KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP-----NLEISLIMIEEHYS-A   76 (139)
Q Consensus         6 v~is~~AY~K~iLHAaK-y--P~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsP-----mlEvAL~~id~~~~-~   76 (139)
                      |.|.+.+..+|+=|..+ .  -...|.|.|||...+   ..|+|+||.|+-|....-.+     =.+-.-.+.+.+-+ .
T Consensus         8 V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~---~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~   84 (338)
T 4b4t_U            8 VTIAPLVLLSALDHYERTQTKENKRCVGVILGDANS---STIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN   84 (338)
T ss_dssp             EEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECS---SEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred             EEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcC---CEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence            89999999999999765 2  235799999998654   48999999999875432111     01223333343333 2


Q ss_pred             CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCC-CceEEEEeCCC
Q 032531           77 QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFP-QCAVLLITKSS  123 (139)
Q Consensus        77 ~~l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~-~a~ll~vDn~k  123 (139)
                      .+..|||||+...     .+++....|-+-+.+.++ +++++++|.+.
T Consensus        85 ~~e~iVGWY~tg~-----~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~  127 (338)
T 4b4t_U           85 AKEKLIGWYHSGP-----KLRASDLKINELFKKYTQNNPLLLIVDVKQ  127 (338)
T ss_dssp             CSCEEEEEEECCS-----SCCSTHHHHHHHHGGGCCSCCCEEEECSCC
T ss_pred             ccCCEEEEEecCC-----CCCccHHHHHHHHHhccCCCcEEEEecCCC
Confidence            6699999999753     345556678888888774 67888887655

>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}

Probab=98.15  E-value=2.2e-05  Score=57.88  Aligned_cols=104  Identities=19%  Similarity=0.296  Sum_probs=71.7

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceecccc-----ccCchhHHHHHHHHHHHHhhhCCce
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHS-----HLGLLPNLEISLIMIEEHYSAQGLG   80 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~-----~~~LsPmlEvAL~~id~~~~~~~l~   80 (139)
                      +.|+..++.+|+-||.+-.-..++|+|+|+..++   ...|+|.+|+=-.     ...+.|-   .+..+..++++.|+.
T Consensus         2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~---~~~v~~~~p~~n~~~~~~~f~~dp~---~~~~~~~~~~~~g~~   75 (146)
T 2kks_A            2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGD---DRWVERVYPLNNLDQSPEHFSMDPR---EQLTAVKDMRKNGWV   75 (146)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETT---EEEEEEEECCCCCSCCSSSCCCCHH---HHHHHHHHHHHHTCE
T ss_pred             EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCC---CcEEEEEEECCCcCCCCceEEECHH---HHHHHHHHHHHCCCE
Confidence            6899999999999999844479999999986543   5788999998411     1233443   233444566778999


Q ss_pred             EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEeC
Q 032531           81 IVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLITK  121 (139)
Q Consensus        81 IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vDn  121 (139)
                      +||+||...... ..||..-.+.+     ..++.+.+++..
T Consensus        76 ivG~~HSHP~~~-~~PS~~D~~~~-----~~~~~~~lIvs~  110 (146)
T 2kks_A           76 MLGNFHSHPATP-ARPSAEDKRLA-----FDPSLSYLIISL  110 (146)
T ss_dssp             EEEEEEEESSSC-SSCCHHHHTTC-----CSSSCEEEEEEC
T ss_pred             EEEEEeCCCcCC-CCCCHHHHHhh-----hcCCCeEEEEEc
Confidence            999999986543 55776554432     235666665543

>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}

Probab=98.14  E-value=1.5e-05  Score=59.14  Aligned_cols=104  Identities=15%  Similarity=0.223  Sum_probs=71.0

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceecccc-------ccCchhHHHHHHHHHHHHhhhCC
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHS-------HLGLLPNLEISLIMIEEHYSAQG   78 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~-------~~~LsPmlEvAL~~id~~~~~~~   78 (139)
                      +.|+..++.||+-||.+---..++|+|+|+...+  ..+.|+|.+|+-=.       ...+.|.-   +..++.+.++.|
T Consensus         1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~--~~~~v~~~~p~~n~~~~~~~~~f~~dp~~---~~~~~~~~~~~g   75 (153)
T 2kcq_A            1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDD--GDNRVAALHRATNRRSEQRTRRYELTADD---YRAADAAAQEQG   75 (153)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTT--SCEEEEEEEESSCCCCCCCSCCSSCCCCS---HHHHHHHHHHHT
T ss_pred             CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccC--CCeEEEEEEECCCCCCCCCCcEEEECHHH---HHHHHHHHHHCC
Confidence            3688999999999999853479999999986522  36889999999532       12234432   334455667789


Q ss_pred             ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEe
Q 032531           79 LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT  120 (139)
Q Consensus        79 l~IvGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vD  120 (139)
                      +.|||+||...... ..||..-.+-+     ..++.+.+++.
T Consensus        76 ~~ivG~yHSHP~~~-~~PS~~D~~~~-----~~~~~~~lIvs  111 (153)
T 2kcq_A           76 LDVVGVYHSHPDHP-ARPSATDLEEA-----TFPGFTYVIVS  111 (153)
T ss_dssp             CEEEEEEEECSSSS-SSCCHHHHHTC-----CCTTSEEEEEE
T ss_pred             CeEEEEEeCCCCCC-CCCCHHHHHhh-----hcCCCeEEEEE
Confidence            99999999987543 56776654322     23566555553

>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A

Probab=97.83  E-value=0.00019  Score=51.38  Aligned_cols=98  Identities=10%  Similarity=0.025  Sum_probs=63.4

Q ss_pred             CcceeEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceE
Q 032531            2 GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGI   81 (139)
Q Consensus         2 ~~M~v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~I   81 (139)
                      |+| +.|+..++.+|+-||.+---..++|+|+|+.       -.|+|.+|+= .. .-.|-.+.-     ......|+.+
T Consensus         1 ~~~-v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~-------~~v~~~~~~p-~~-~~~~~~~f~-----~~~~~~~~~i   65 (124)
T 1oi0_A            1 GSS-MKISRGLLKTILEAAKSAHPDEFIALLSGSK-------DVMDELIFLP-FV-SGSVSAVIH-----LDMLPIGMKV   65 (124)
T ss_dssp             CCS-CEECHHHHHHHHHHHHHHTTSCCEEEEEEST-------TEECEEEECC-CC-C------------------CCCEE
T ss_pred             CCE-EEEcHHHHHHHHHHHHhcCCCeeEEEEeccc-------CEEEEEEECC-CC-CCCcCceee-----eeeccCCCEE
Confidence            456 8899999999999997654469999999963       1678888876 42 222211111     1234588999


Q ss_pred             EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCceEEEEe
Q 032531           82 VGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLIT  120 (139)
Q Consensus        82 vGyY~Ane~~~d~~~~~~a~kIa~kI~~~~~~a~ll~vD  120 (139)
                      ||+||...... ..||..-.+-+.     .++...+++.
T Consensus        66 vG~~HSHP~~~-~~PS~~D~~~~~-----~~~~~~lIvs   98 (124)
T 1oi0_A           66 FGTVHSHPSPS-CRPSEEDLSLFT-----RFGKYHIIVC   98 (124)
T ss_dssp             EEEEEEESSSC-CSCCHHHHHHHH-----HSCSEEEEEE
T ss_pred             EEEEEECcCCC-CccCHHHHHhhh-----cCCCEEEEEE
Confidence            99999986533 667776655544     2566666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1oi0a_	121	Hypothetical protein AF2198 {Archaeon Archaeoglobu	96.6

>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.60  E-value=0.0064  Score=42.08  Aligned_cols=85  Identities=11%  Similarity=0.064  Sum_probs=52.8

Q ss_pred             eEEeHHHHHHHHhhhhcCCCCeeeEEEeeecCCCCCceeEEEeceeccccccCchhHHHHHHHHHHHHhhhCCceEEEEE
Q 032531            6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYF   85 (139)
Q Consensus         6 v~is~~AY~K~iLHAaKyP~~aVnGvLlG~~~~~~~~~v~i~DaVPLfH~~~~LsPmlEvAL~~id~~~~~~~l~IvGyY   85 (139)
                      ++|+...+-.|+-||.+-.-..++|+|+|+..       .+++.+|+=-..  -.|...     .+......|+.|+|.|
T Consensus         4 l~I~~~~l~~i~~hA~~~~P~E~cGlL~G~~~-------~i~~~~~~~n~~--~~~~~~-----~~~~~~~~~~~ivgi~   69 (121)
T d1oi0a_           4 MKISRGLLKTILEAAKSAHPDEFIALLSGSKD-------VMDELIFLPFVS--GSVSAV-----IHLDMLPIGMKVFGTV   69 (121)
T ss_dssp             CEECHHHHHHHHHHHHHHTTSCCEEEEEESTT-------EECEEEECCCCC--------------------CCCEEEEEE
T ss_pred             EEECHHHHHHHHHHHHhcCCceeEEEEEecCC-------cEEEEEEcCCCC--CCcccc-----cccchhhcCCeEEEEE
Confidence            79999999999999988655799999999531       344555543221  122111     1223356799999999


Q ss_pred             EeCCCCCCCCCCHHHHHHHH
Q 032531           86 HANERFDDLELDSIAKNIGN  105 (139)
Q Consensus        86 ~Ane~~~d~~~~~~a~kIa~  105 (139)
                      |....- +..||..-.+.+.
T Consensus        70 HSHP~~-~a~PS~~D~~~~~   88 (121)
T d1oi0a_          70 HSHPSP-SCRPSEEDLSLFT   88 (121)
T ss_dssp             EEESSS-CCSCCHHHHHHHH
T ss_pred             EecCCC-CCCcCHHHHHhhh
Confidence            997643 4667776555443