Citrus Sinensis ID: 032532

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHcccccccHHHHHHHccccccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccccEEEEEcHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHEEccccccccccEEEcccccccccHHHccccccEHHHHHHHccccccccEEEEcccHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEHHHHHHHHHHcccccccccHHHHccccc
Coil and Loop (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLvnpmlrpvvssrFESVSSarmeehgfesttISDILKakgkgadgswlwcttdDTVYDAVKSMTQHNVGAlvvvkpgeqksvagiITERDYLRKIIVQgrsskstkvgdimteev
Flexible Loop (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSsarmeehgfesttisdILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVgalvvvkpgeqksvagiiterdylrkiivqgrsskstkvgdimteev
Low Complexity Region (SEG)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV
Disordered region (IsUnstruct)
*******FLSHGNIVKSAVLQRIRLVNPMLRPVV********************TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ*****************
Disordered Region (DISOPRED)
*************IVKSAVLQRIRL********************************DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE*
Disordered Region (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV
Disordered Region (DISPRO)
*QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARME*HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9LEV3	206	CBS domain-containing pro	yes	no	0.992	0.669	0.791	2e-60
Q58069	194	Uncharacterized protein M	yes	no	0.410	0.293	0.369	7e-05
O34682	148	Uncharacterized protein Y	yes	no	0.539	0.506	0.360	0.0002
P54606	140	CBS domain-containing pro	no	no	0.446	0.442	0.363	0.0004

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 125/139 (89%), Gaps = 1/139 (0%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
           MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query: 60  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKI
Sbjct: 61  MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120

Query: 120 IVQGRSSKSTKVGDIMTEE 138
           IVQGRSSKSTKVGDIMTEE
Sbjct: 121 IVQGRSSKSTKVGDIMTEE 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0653 PE=4 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 8/65 (12%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T + ++YD    MT++N+GA+V+V   E     GI+TERD +++++     SK+ K  D+
Sbjct: 21  TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVV-----SKNLKPKDV 72

Query: 135 MTEEV 139
           + EEV
Sbjct: 73  LAEEV 77

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O34682|YLBB_BACSU Uncharacterized protein YlbB OS=Bacillus subtilis (strain 168) GN=ylbB PE=4 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 11/86 (12%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
           T I D++ A          +CT  D VY+A   M   NVGA+ VV   + +++ GI+T+R
Sbjct: 2   TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDR 53

Query: 114 DY-LRKIIVQGRSSKSTKVGDIMTEE 138
           D  LR I +  +   S K+ D MTE+
Sbjct: 54  DLVLRGIAI--KKPNSQKITDAMTEK 77

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P54606|YHCV_BACSU CBS domain-containing protein YhcV OS=Bacillus subtilis (strain 168) GN=yhcV PE=4 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + + T+ +A   M QHNVGA+ VV   EQ  + G++T+RD   +   QGR  + T V +
Sbjct: 15  VSPNQTIQEAASLMKQHNVGAIPVV---EQGVLKGMLTDRDIALRTTAQGRDGQ-TPVSE 70

Query: 134 IMTEEV 139
           +M+ E+
Sbjct: 71  VMSTEL 76

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
357491621	205	Cbs domain protein [Medicago truncatula]	0.992	0.673	0.847	6e-66
357491617	242	Cbs domain protein [Medicago truncatula]	0.992	0.570	0.847	1e-65
357491619	254	Cbs domain protein [Medicago truncatula]	0.992	0.543	0.847	1e-65
357491615	205	Cbs domain protein [Medicago truncatula]	0.992	0.673	0.847	3e-65
224127037	205	predicted protein [Populus trichocarpa]	0.992	0.673	0.840	1e-64
351722175	205	uncharacterized protein LOC100527191 [Gl	0.992	0.673	0.833	6e-64
225434277	205	PREDICTED: CBS domain-containing protein	0.992	0.673	0.840	5e-63
297745725	262	unnamed protein product [Vitis vinifera]	0.992	0.526	0.840	8e-63
388511535	205	unknown [Lotus japonicus]	0.992	0.673	0.804	5e-62
449444316	206	PREDICTED: CBS domain-containing protein	0.992	0.669	0.820	1e-61

>gi|357491621|ref|XP_003616098.1| Cbs domain protein [Medicago truncatula] gi|355517433|gb|AES99056.1| Cbs domain protein [Medicago truncatula]

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 117/138 (84%), Positives = 132/138 (95%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 38  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 98  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 157

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 158 VQGRSSKSTKVGDIMTEE 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491617|ref|XP_003616096.1| Cbs domain protein [Medicago truncatula] gi|355517431|gb|AES99054.1| Cbs domain protein [Medicago truncatula]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/138 (84%), Positives = 132/138 (95%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 38  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 98  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 157

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 158 VQGRSSKSTKVGDIMTEE 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491619|ref|XP_003616097.1| Cbs domain protein [Medicago truncatula] gi|355517432|gb|AES99055.1| Cbs domain protein [Medicago truncatula]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/138 (84%), Positives = 132/138 (95%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 50  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 109

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 110 KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 169

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 170 VQGRSSKSTKVGDIMTEE 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491615|ref|XP_003616095.1| Cbs domain protein [Medicago truncatula] gi|217073214|gb|ACJ84966.1| unknown [Medicago truncatula] gi|355517430|gb|AES99053.1| Cbs domain protein [Medicago truncatula] gi|388522955|gb|AFK49539.1| unknown [Medicago truncatula]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/138 (84%), Positives = 132/138 (95%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 1   MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITERDYLRKII
Sbjct: 61  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 121 VQGRSSKSTKVGDIMTEE 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127037|ref|XP_002319991.1| predicted protein [Populus trichocarpa] gi|222858367|gb|EEE95914.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/138 (84%), Positives = 132/138 (95%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGA+++ L+HGN+VK ++LQ +R+++P+LRP+V SRFESVSSAR+EEHGFEST I+DIL
Sbjct: 1   MQGALRACLTHGNVVKDSLLQHVRVLSPLLRPIVFSRFESVSSARIEEHGFESTRIADIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 61  KEKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 121 VQGRSSKSTKVGDIMTEE 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722175|ref|NP_001236211.1| uncharacterized protein LOC100527191 [Glycine max] gi|255631750|gb|ACU16242.1| unknown [Glycine max]

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 129/138 (93%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG  QSFLSHGN++++AVLQR+R+VNP+L+P+VSSRFESV+ AR+EEHGFESTTISDIL
Sbjct: 1   MQGGFQSFLSHGNVIRNAVLQRVRMVNPLLQPIVSSRFESVTPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
             KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVK    K++AGIITERDYLRKII
Sbjct: 61  NDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 121 VQGRSSKSTKVGDIMTEE 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434277|ref|XP_002262902.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 1 [Vitis vinifera] gi|225434279|ref|XP_002262927.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 2 [Vitis vinifera] gi|225434281|ref|XP_002262956.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 3 [Vitis vinifera]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 116/138 (84%), Positives = 129/138 (93%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGAIQ+ +SHG+IVK+AVL +IRLVNP++  VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 1   MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 61  KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 121 VQGRSSKSTKVGDIMTEE 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745725|emb|CBI15781.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 116/138 (84%), Positives = 129/138 (93%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGAIQ+ +SHG+IVK+AVL +IRLVNP++  VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 58  MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 117

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITERDYLRKII
Sbjct: 118 KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLRKII 177

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 178 VQGRSSKSTKVGDIMTEE 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511535|gb|AFK43829.1| unknown [Lotus japonicus]

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 111/138 (80%), Positives = 130/138 (94%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG +++  S GN++K+AVLQ++R+VNP+L+PV  SR+ESVS AR+EEHGFESTTI+DIL
Sbjct: 1   MQGGMRAIFSRGNVIKNAVLQQVRMVNPLLKPVAFSRYESVSPARIEEHGFESTTIADIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           KAKGKGADGSWLWCTT+DTVY+AVKSMTQ+NVGALVVVKP E+KS+AGIITERDYLRKII
Sbjct: 61  KAKGKGADGSWLWCTTEDTVYEAVKSMTQNNVGALVVVKPAEEKSIAGIITERDYLRKII 120

Query: 121 VQGRSSKSTKVGDIMTEE 138
           VQGRSSKSTKVGDIMTEE
Sbjct: 121 VQGRSSKSTKVGDIMTEE 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444316|ref|XP_004139921.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like isoform 1 [Cucumis sativus] gi|449444318|ref|XP_004139922.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like isoform 2 [Cucumis sativus]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/139 (82%), Positives = 127/139 (91%), Gaps = 1/139 (0%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 59
           MQGA++SFLSHGN+VK+AVLQ+IR+ NP +RP + SRF  S SSA +EEHGFESTTI DI
Sbjct: 1   MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESTTIDDI 60

Query: 60  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           LKAKGK ADGSWLWCTT+D+VYDAV+SMTQHNVGALVVVKP EQ S+AGIITERDYLRKI
Sbjct: 61  LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLRKI 120

Query: 120 IVQGRSSKSTKVGDIMTEE 138
           IVQGRSSKSTKVGDIMTEE
Sbjct: 121 IVQGRSSKSTKVGDIMTEE 139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2183740	206	CBSX3 "AT5G10860" [Arabidopsis	0.992	0.669	0.791	3.7e-55
TAIR|locus:4515102654	193	AT1G47271 "AT1G47271" [Arabido	0.856	0.616	0.483	8.4e-26
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.431	0.410	0.476	1.1e-09
UNIPROTKB|Q60B97	150	MCA0583 "CBS domain protein" [	0.453	0.42	0.375	1.3e-06
UNIPROTKB|Q0BYV1	144	HNE_2660 "CBS domain protein"	0.553	0.534	0.305	2.6e-05
UNIPROTKB|Q81UY6	139	BAS0687 "CBS domain protein" [	0.424	0.424	0.333	9.5e-05
TIGR_CMR|BA_0720	139	BA_0720 "CBS domain protein" [	0.424	0.424	0.333	9.5e-05

TAIR|locus:2183740 CBSX3 "AT5G10860" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 110/139 (79%), Positives = 125/139 (89%)

Query:     1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
             MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct:     1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query:    60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
             +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKI
Sbjct:    61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKI 120

Query:   120 IVQGRSSKSTKVGDIMTEE 138
             IVQGRSSKSTKVGDIMTEE
Sbjct:   121 IVQGRSSKSTKVGDIMTEE 139

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:4515102654 AT1G47271 "AT1G47271" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 58/120 (48%), Positives = 86/120 (71%)

Query:    19 VLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDD 78
             +L R   V  + +  VS+ F  ++S    E G E+ T++D+L  K    D +W+ C T+D
Sbjct:     8 LLARANEVPKIHQRKVSAGFGCLTSPPPPEKGLENLTVADVLSTKDTDID-TWISCRTND 66

Query:    79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE 138
             TV DAVK+M +HN+G+LVV++PG+Q+ +AGI+TERDY++KII  GRSSK TKVG++MT+E
Sbjct:    67 TVSDAVKNMAKHNIGSLVVLEPGDQQYIAGIVTERDYMKKIIGAGRSSKLTKVGEVMTDE 126

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 30/63 (47%), Positives = 43/63 (68%)

Query:    77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             D  V DA++ M + N+GAL VV   E   V G+++ERDY RK+I++GRSS  T V +IM+
Sbjct:    24 DQMVLDALRLMAEKNIGALPVV---EGNVVVGVVSERDYARKVILKGRSSVGTPVREIMS 80

Query:   137 EEV 139
              +V
Sbjct:    81 NKV 83

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q60B97 MCA0583 "CBS domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 24/64 (37%), Positives = 41/64 (64%)

Query:    77 DDTVYDAVKSMTQHNVGALVVVKPGEQK-SVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
             DDT+ +A K M  H+VG++VVV+  E      GI+T+RD + +I+ +  +  +  VGD+M
Sbjct:    17 DDTIVEAAKVMRAHHVGSVVVVEEAEGGCKPLGILTDRDLVVEILAEEVAPDAVTVGDVM 76

Query:   136 TEEV 139
             + E+
Sbjct:    77 SFEL 80

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0BYV1 HNE_2660 "CBS domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 99 (39.9 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 26/85 (30%), Positives = 44/85 (51%)

Query:    56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP-GEQKSVAGIITERD 114
             I  IL  KG+      +    DDT+ +A + + +  +GA+V +   GE   + G+++ERD
Sbjct:     3 IEQILNDKGREV----ITLRADDTLREAARLLDERRIGAVVTLDADGE---IVGVLSERD 55

Query:   115 YLRKIIVQGRSSKSTKVGDIMTEEV 139
              +R+   QG  +    VG+ MT  V
Sbjct:    56 IVRQFARQGEGALDMPVGNAMTRAV 80

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81UY6 BAS0687 "CBS domain protein" [Bacillus anthracis (taxid:1392)]

 Score = 96 (38.9 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 23/69 (33%), Positives = 40/69 (57%)

Query:    74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK---STK 130
             CT  D VY+A   M + ++G + VV   E + V G++T+RD    ++V+G + K   S K
Sbjct:    15 CTPLDNVYEAAVKMKEESIGLIPVV---ENEQVVGLVTDRD----LVVRGIAEKHPGSNK 67

Query:   131 VGDIMTEEV 139
             + ++MT  +
Sbjct:    68 ITNVMTTNI 76

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0720 BA_0720 "CBS domain protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 96 (38.9 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 23/69 (33%), Positives = 40/69 (57%)

Query:    74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK---STK 130
             CT  D VY+A   M + ++G + VV   E + V G++T+RD    ++V+G + K   S K
Sbjct:    15 CTPLDNVYEAAVKMKEESIGLIPVV---ENEQVVGLVTDRD----LVVRGIAEKHPGSNK 67

Query:   131 VGDIMTEEV 139
             + ++MT  +
Sbjct:    68 ITNVMTTNI 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.361    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      139       139   0.00091  102 3  11 22  0.45    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  119 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.97u 0.15s 13.12t   Elapsed:  00:00:01
  Total cpu time:  12.97u 0.15s 13.12t   Elapsed:  00:00:01
  Start:  Mon May 20 18:29:35 2013   End:  Mon May 20 18:29:36 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LEV3	CBSX3_ARATH	No assigned EC number	0.7913	0.9928	0.6699	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00131316 hypothetical protein (205 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	9e-25
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	4e-14
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	2e-13
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	3e-10
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	4e-10
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	5e-10
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-09
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	9e-09
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	3e-08
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	5e-08
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	1e-07
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	3e-07
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	7e-07
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	7e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-06
pfam00571	57	pfam00571, CBS, CBS domain	6e-06
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	1e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	1e-05
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	2e-05
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	3e-05
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	4e-05
cd04589	111	cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd	7e-05
cd04617	118	cd04617, CBS_pair_4, The CBS domain, named after h	7e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	8e-05
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-04
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	1e-04
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	1e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	2e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	2e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-04
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	3e-04
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	3e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	5e-04
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	6e-04
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	6e-04
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	8e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.001
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	0.001
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.001
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	0.002
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	0.002
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	0.003
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	0.004

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 91.0 bits (227), Expect = 9e-25
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 69  GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS 128
              +    D TV +A K M + N+GA+VVV  G +  + GI +ERD +RK+ ++G S+  
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGR--LVGIFSERDIVRKVALRGASALD 58

Query: 129 TKVGDIMTEEV 139
           T V +IMT  V
Sbjct: 59  TPVSEIMTRNV 69

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 63.7 bits (156), Expect = 4e-14
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           + C+ D T+ +A + MT+H V +L+VV  G    + GI+T+RD   +++ +G     T V
Sbjct: 4   VTCSPDTTIREAARLMTEHRVSSLLVVDDGR---LVGIVTDRDLRNRVVAEGLDP-DTPV 59

Query: 132 GDIMTEEV 139
            ++MT   
Sbjct: 60  SEVMTAPP 67

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 61.7 bits (151), Expect = 2e-13
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
             + DDT+ +A + M +H+VGAL V    E   + GI+T+RD + + + +GR   +T VG
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPVC---ENDRLVGIVTDRDIVVRAVAEGRDPDTTTVG 61

Query: 133 DIMTEEV 139
           D+MT  V
Sbjct: 62  DVMTRGV 68

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            +   TV +A K M +  V  ++V+   +   + GI T +D   +++ QG   +ST V  
Sbjct: 6   VSPTTTVQEAAKLMREKRVSCVLVM---DGNKLVGIFTSKDIALRVVAQGLDPESTLVER 62

Query: 134 IMT 136
           +MT
Sbjct: 63  VMT 65

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.1 bits (128), Expect = 4e-10
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
             D TVY+A   MT++N+G L+VV   +     GIITERD ++K++ +    +   VG++
Sbjct: 7   DPDTTVYEAANIMTENNIGRLIVVDNEK---PVGIITERDLVKKVVSRNLKPREVPVGEV 63

Query: 135 MTEEV 139
           M+  +
Sbjct: 64  MSTPL 68

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.0 bits (128), Expect = 5e-10
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           TV +A++ M +H V +LVV K  E     GI+T RD L+K++ +GR      V +IMT
Sbjct: 11  TVAEALQLMKEHGVSSLVVEKRRES-DAYGIVTMRDILKKVVAEGRDPDRVNVYEIMT 67

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.5 bits (121), Expect = 4e-09
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + DDTV +A++ M +H +  L VV   +   + GI+TERD L + + +G       VGD
Sbjct: 6   VSPDDTVAEALRLMLEHGISGLPVVD--DDGRLVGIVTERD-LLRALAEGGLDPLVTVGD 62

Query: 134 IMTEEV 139
           +MT +V
Sbjct: 63  VMTRDV 68

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 49.8 bits (119), Expect = 9e-09
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D +V DA+  M+++ V A+ VV   +   + GIITERD LR +       +   V +
Sbjct: 12  VKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRALA--AGGKRLLPVKE 66

Query: 134 IMTEEV 139
           +MT+ V
Sbjct: 67  VMTKPV 72

Length = 117

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D ++ +A K M + NVG++VVV P E     GI+TERD +R  +  G     T V +
Sbjct: 6   VDPDTSIREAAKLMAEENVGSVVVVDPDE--RPIGIVTERDIVRA-VAAGIDL-DTPVSE 61

Query: 134 IMTEEV 139
           IMT ++
Sbjct: 62  IMTRDL 67

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            +   ++ DA + M    V +LVV+         GI+T +D   ++I  GR SK+ KV +
Sbjct: 162 VSPQASIQDAARKMKDEGVSSLVVLDDSGPLL--GIVTRKDLRSRVIADGR-SKTQKVSE 218

Query: 134 IMTEEV 139
           +MT  V
Sbjct: 219 VMTSPV 224

Length = 610

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C  D ++ +A   M +  + ++VVV  G      GI+TERD LR ++  G   ++  VG+
Sbjct: 6   CPPDTSLAEAASRMRERRISSIVVVDDGRP---LGIVTERDILR-LLASGPDLQTP-VGE 60

Query: 134 IMT 136
           +M+
Sbjct: 61  VMS 63

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + D ++ DA+  M++  +G   VV   E   + GI T+ D LR+ + +G    +  V D
Sbjct: 7   VSPDTSLKDALLEMSRKGLGMTAVVD--EDGRLVGIFTDGD-LRRALEKGLDILTLPVAD 63

Query: 134 IMT 136
           +MT
Sbjct: 64  VMT 66

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
             T DD++ DA + M +  VG L VV   +   + GI+TERD L+
Sbjct: 82  TITPDDSIKDAAELMLEKRVGGLPVVD--DDGKLVGIVTERDLLK 124

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.7 bits (106), Expect = 7e-07
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM 135
           +  + +AV +M + ++G+LVV++ GE   + G++T R+ L+ +   G     T V  IM
Sbjct: 9   ETLLSEAVATMAEQDLGSLVVMERGE---LVGLLTFREVLQAMAQHGAGVLDTTVRAIM 64

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 30  LRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ 89
           LR    S F ++S   +         + +I+           +     DTV +A   M +
Sbjct: 45  LRDASPSPFTTLSEHELYL--LLKMPVKEIMTKDV-------ITVHPLDTVEEAALLMRE 95

Query: 90  HNVGALVVVKPGEQKSVAGIITERDYLR 117
           H +G L VV+ G    + GIITE D LR
Sbjct: 96  HRIGCLPVVEDGR---LVGIITETDLLR 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.0 bits (97), Expect = 6e-06
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +    D ++ +A++ M ++ +  L VV   E   + GI+T RD LR ++
Sbjct: 10  VTVPPDTSLEEALELMRENGISRLPVV--DEDGKLVGIVTLRDLLRALL 56

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + D TV +A++ M ++ +  L VV   +   + GI+T RD LR       +     V +
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVD--DDGKLVGIVTNRD-LRFE-----TDLDKPVSE 58

Query: 134 IMTEEV 139
           +MT E 
Sbjct: 59  VMTPEN 64

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           DDTV  A++ M ++ V  L VV  G    V G I E D L   +++G++  S  V ++M 
Sbjct: 9   DDTVSQAIERMREYGVSQLPVVDDGR---VVGSIDESD-LLDALIEGKAKFSLPVREVMG 64

Query: 137 E 137
           E
Sbjct: 65  E 65

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 11/77 (14%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR------- 124
           +  T D ++ +A   + +H + AL VV     + + GI+T+RD LR     GR       
Sbjct: 5   VTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHARPDGRRPLRGRL 62

Query: 125 --SSKSTKVGDIMTEEV 139
               K   VGDIM+  V
Sbjct: 63  RGRDKPETVGDIMSPPV 79

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK------ 130
           DD V  A + M  H++  L V++ G+   + GI+TE+D     +   R     +      
Sbjct: 9   DDRVSHARRLMLDHDISRLPVIEGGK---LVGIVTEKDIADA-LRSFRPLVRDRHQERRI 64

Query: 131 ----VGDIMTEEV 139
               V DIMT  V
Sbjct: 65  RNLPVSDIMTRPV 77

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 38.3 bits (90), Expect = 4e-05
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
            + D T+ +A++ + ++ +  L VV   E+  + GI+T RD ++ + 
Sbjct: 5   VSPDTTLEEALELLRENGIRRLPVVD--EEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239962 cd04589, CBS_pair_CAP-ED_DUF294_assoc_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             ++ DA + M +H   AL+V        + GI+T  D L  +++ G  S ST VG+I T
Sbjct: 9   STSIRDAARLMREHGADALLV--RDGDPRL-GIVTRTDLLDAVLLDGLPS-STPVGEIAT 64

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239989 cd04617, CBS_pair_4, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + +VYDA+ ++   +VG+L VV   E   + G+++ +D L+  I      +   VG IMT
Sbjct: 9   NTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMT 65

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 118

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 47  EEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
           E    ++TT+ D++           +  T DD V +A + M +H V  L VV   +   +
Sbjct: 51  EGRDPDTTTVGDVMT-------RGVVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRL 101

Query: 107 AGIITERDYLRK 118
            GI++  D  R 
Sbjct: 102 VGIVSLGDLARA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           D TV++A+  M +  +  L VV  G    + G+I+  D LR
Sbjct: 73  DATVFEALLLMLERGIHHLPVVDDGR---LVGVISATDLLR 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 78  DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
           D+V  A + M +H +G L VV   E   + GIIT RD +R      R+  +  V D MT 
Sbjct: 10  DSVGRAARLMEKHRIGGLPVV---EDGKLVGIITSRD-VR------RAHPNRLVADAMTR 59

Query: 138 EV 139
           EV
Sbjct: 60  EV 61

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T D  V DA+  M+Q    + V+V   E+  + GI TERD +R +   G+      +G++
Sbjct: 7   TPDTPVADAIALMSQQGDSSCVLVV--EKGRLLGIFTERDIVR-LTAIGKDLSDLPIGEV 63

Query: 135 MTEEV 139
           MT+ V
Sbjct: 64  MTQPV 68

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
             + D+   K             D ++ +A   M ++NV  L VV    +  + G+++  
Sbjct: 68  PQVRDLEIDKPVTVS-------PDTSLKEAWNLMDENNVKTLPVVDEEGK--LLGLVSLS 118

Query: 114 DYLRKIIVQGRSSKSTKVG 132
           D  R  +        +K  
Sbjct: 119 DLARAYMDILDPEILSKSP 137

Length = 546

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           +D+V DAV  M +++  ++VVV P +   V GI+T++D LR
Sbjct: 87  NDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
            + D ++ +A + M +H +  L VV   ++  + GI+T  D LR
Sbjct: 71  VSPDTSLEEAAELMLEHGIRRLPVVD--DEGRLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI----IVQGRSSKSTKV 131
           TD ++  A K + +H + AL V+   E + + GI+T+RD L+        + R  +   V
Sbjct: 260 TDTSIDHARKLLQEHRIKALPVLD--EHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTV 317

Query: 132 GDIMTEEV 139
             IMT  V
Sbjct: 318 KGIMTTPV 325

Length = 382

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + DD++ D V  M    +  L V+   E+  V G ITE D +R ++    S +S +V +
Sbjct: 78  VSPDDSISDVVNLMRDKGISQLPVI---EEDKVVGSITENDIVRALLEGMESIRSLRVRE 134

Query: 134 IMTE 137
           +M E
Sbjct: 135 VMGE 138

Length = 187

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 48  EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
             G E   + D++       D        D+ +YDA++ M +HNVG L+V    E + V 
Sbjct: 49  ARGLELAKVKDVMTKDVITIDE-------DEQLYDAIRLMNKHNVGRLIVTD-DEGRPV- 99

Query: 108 GIITERDYLR 117
           GIIT  D LR
Sbjct: 100 GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + T+ +A + + ++   AL VV+ G    V GII+ RD + K +  G       V D M+
Sbjct: 10  EATIEEARELLLRYGHTALPVVEGGR---VVGIISRRD-VEKALRHGLG--HAPVKDYMS 63

Query: 137 EEV 139
            +V
Sbjct: 64  TDV 66

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 76  TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII--------VQGRSSK 127
            DD++ DA + M +H +  L VV   E   + G++T+RD LR  +              +
Sbjct: 8   EDDSLADAEELMREHRIRHLPVVN--EDGKLVGLLTQRDLLRAALSSLSDNGEESLTKER 65

Query: 128 STKVGDIMTEEV 139
              V ++M  +V
Sbjct: 66  DVPVAEVMKTDV 77

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D T+ +A+  M ++ +  + VV   E   + GIIT RD +R       +  S  V +
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVD--ENGKLVGIITNRD-VRFE-----TDLSQPVSE 151

Query: 134 IMTEE 138
           +MT+E
Sbjct: 152 VMTKE 156

Length = 486

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           D+T+ DA+K M + ++G L VV       + GI++  D LR
Sbjct: 72  DETLRDALKRMAERDIGRLPVVDDS--GRLVGIVSRSDLLR 110

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 23/84 (27%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI---IVQGRS-------- 125
           + +V +A + M  +++  L VV    +  + GI++E D LR+      + R+        
Sbjct: 10  ETSVAEAARLMLDNHISGLPVVDDDGR--LVGIVSEGDLLRRAELGTERRRARWLDLLAG 67

Query: 126 ----------SKSTKVGDIMTEEV 139
                     S   KV D+MT  V
Sbjct: 68  AEELAAAFVRSHGRKVADVMTRPV 91

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
           +D V DA K M + N+  L VV   +  ++ G+IT+ D  R
Sbjct: 97  NDDVVDAAKLMLEANISGLPVV---DNDNIVGVITKTDICR 134

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121
           D+ +YDA++ M ++NVG L+V      K V GIIT  D L +I  
Sbjct: 250 DEDIYDAIRLMNKNNVGRLLVTD-SNGKPV-GIITRTDILTRIAG 292

Length = 294

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 75  TTDDTVYDAVKSMTQHNV-GALVVVKPGEQKSVAGIITERDYLRKIIVQG-RSSKSTKVG 132
           T D +V +AV+ + +  + G  VV    +  ++ G ++E+D L++++           V 
Sbjct: 7   TPDMSVTEAVEKLLKSKISGGPVV---DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVR 63

Query: 133 DIMTEEV 139
           DIMT EV
Sbjct: 64  DIMTTEV 70

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
              +D++ DA+K     +   L VV     K + GI++  D
Sbjct: 71  VYPEDSLEDALKKFEDSDYEQLPVVDDDPGK-LLGILSRSD 110

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
             D +V D    M ++N+G L VV  G+   + GI+T  D LR
Sbjct: 81  EPDTSVSDVASLMLENNIGGLPVVDDGK---LVGIVTRTDILR 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
COG3620	187	Predicted transcriptional regulator with C-termina	99.41
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.37
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.12
COG2524	294	Predicted transcriptional regulator, contains C-te	99.05
COG2524	294	Predicted transcriptional regulator, contains C-te	99.05
COG2905	610	Predicted signal-transduction protein containing c	99.01
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.96
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.88
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.85
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.85
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.82
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.79
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.77
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.74
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.73
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.72
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.68
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.68
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.68
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.67
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.67
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.66
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.64
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.64
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.62
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.62
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.61
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.61
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.6
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.6
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.6
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.6
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.59
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.58
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.57
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.57
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.57
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.56
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.56
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.56
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.56
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.55
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.55
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.54
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.54
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.54
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.54
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.54
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.53
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.53
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.52
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.52
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.52
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.51
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.51
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.51
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.5
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.5
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.5
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.49
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.49
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.49
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.49
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.49
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.49
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.49
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.49
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.48
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.48
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.48
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.48
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.48
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.47
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.47
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.47
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.47
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.47
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.47
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.47
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.46
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.46
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.46
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.45
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.45
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.45
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.45
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.44
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.44
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.44
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.43
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.43
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.43
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.43
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.43
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.43
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.42
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.42
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.42
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.42
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.42
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.42
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.41
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.41
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.41
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.41
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.41
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.4
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.4
COG4109	432	Predicted transcriptional regulator containing CBS	98.4
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.4
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.39
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.39
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.39
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.39
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.39
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.39
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.37
COG0517	117	FOG: CBS domain [General function prediction only]	98.37
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.37
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.37
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.36
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.36
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.35
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.35
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.35
COG0517	117	FOG: CBS domain [General function prediction only]	98.34
COG2905	610	Predicted signal-transduction protein containing c	98.33
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.33
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.33
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.31
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.3
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.29
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.28
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.28
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.28
PRK11573	413	hypothetical protein; Provisional	98.27
COG3620	187	Predicted transcriptional regulator with C-termina	98.27
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.27
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.26
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.25
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.23
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.23
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.23
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.22
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.22
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.21
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.2
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.2
COG4109	432	Predicted transcriptional regulator containing CBS	98.2
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.2
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.19
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.19
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.18
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.16
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.16
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.15
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.14
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.13
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.13
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.12
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.12
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.12
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.1
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.07
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.06
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.05
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.04
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.02
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.01
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.98
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.98
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.93
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.84
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.8
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.78
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.73
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.73
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.6
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.58
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.38
PRK11573	413	hypothetical protein; Provisional	97.31
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	96.96
COG1253	429	TlyC Hemolysins and related proteins containing CB	96.92
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	96.89
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.89
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.86
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	96.8
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	96.76
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	96.46
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.37
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	96.17
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.94
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	94.93
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	94.83
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	94.18
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	94.15
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	93.52
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	93.09
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	92.02
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	89.75
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	88.09
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	82.8
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	81.36

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.41  E-value=5.9e-13  Score=95.25  Aligned_cols=125  Identities=22%  Similarity=0.331  Sum_probs=93.3

Q ss_pred             HHHHhhcCCCchHHHHhhhCCccccccchhhhhhcccc---h---hhhhhcCCccCcHHHHhhhcCCCCCCCcEEecCCC
Q 032532            5 IQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVS---S---ARMEEHGFESTTISDILKAKGKGADGSWLWCTTDD   78 (139)
Q Consensus         5 ~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~~~~~~~---~---~~~~~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~   78 (139)
                      |+..|...+|+++.+|+.-+++...+..--.-.+....   .   +.+.+..-...++..+|++       +.+.+.|++
T Consensus        10 lrk~Rk~LGitQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s-------pvv~v~pdD   82 (187)
T COG3620          10 LRKRRKELGITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS-------PVVSVSPDD   82 (187)
T ss_pred             HHHHHHHcCCCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC-------CeeEECchh
Confidence            67788999999999999988876543211111111111   0   1111222246789999999       899999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccCC
Q 032532           79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV  139 (139)
Q Consensus        79 tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~v  139 (139)
                      ++.+++++|.++|++++||+   ++++++|-||..++.++.+.......+..|.++|..|+
T Consensus        83 si~~vv~lM~~~g~SQlPVi---~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~f  140 (187)
T COG3620          83 SISDVVNLMRDKGISQLPVI---EEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPF  140 (187)
T ss_pred             hHHHHHHHHHHcCCccCcee---eCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCC
Confidence            99999999999999999999   45999999999999998865445555677889998653

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.37  E-value=4.9e-12  Score=75.40  Aligned_cols=56  Identities=27%  Similarity=0.510  Sum_probs=52.6

Q ss_pred             HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      |+++|++       ++.++++++++.++++.|.+++++++||+  |++++++|++|.+||++++.
T Consensus         1 v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTP-------PPITVSPDDSLEEALEIMRKNGISRLPVV--DEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBS-------SSEEEETTSBHHHHHHHHHHHTSSEEEEE--STTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcC-------CCEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHhhhh
Confidence            6789998       89999999999999999999999999999  78899999999999998763

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.12  E-value=1.6e-10  Score=90.20  Aligned_cols=80  Identities=30%  Similarity=0.410  Sum_probs=65.5

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc----CCCC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ----GRSS  126 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~----~~~~  126 (139)
                      +.+.++.|||++       +++++.+++++.+|.++|.+++++.+||+  |++.+++||||.+|+++..-..    =+..
T Consensus       242 ~~~LtcadIMSr-------dVvtv~~~ts~dhA~~ll~~H~ikaLPV~--d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~  312 (382)
T COG3448         242 MGELTCADIMSR-------DVVTVSTDTSIDHARKLLQEHRIKALPVL--DEHRRLVGIVTQRDLLKHARPSPFQRLRFL  312 (382)
T ss_pred             hccccHHHhcCc-------cceecCCcCChHHHHHHHHHcCccccccc--ccccceeeeeeHHHHhhccCcchHHHhhcc
Confidence            456899999999       89999999999999999999999999999  8899999999999997732100    0112


Q ss_pred             ccCccccccccCC
Q 032532          127 KSTKVGDIMTEEV  139 (139)
Q Consensus       127 ~~~~v~~im~~~v  139 (139)
                      ....++.+|++++
T Consensus       313 ~~~~vk~imt~~v  325 (382)
T COG3448         313 RPPTVKGIMTTPV  325 (382)
T ss_pred             CCCcccccccCcc
Confidence            3456888998664

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.05  E-value=6.3e-10  Score=85.21  Aligned_cols=62  Identities=32%  Similarity=0.546  Sum_probs=57.5

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      +-...+|+|+|++       ++++++.++.+.||+++|..++++.+.|+  |.+|+++||+|+.|+++.+.
T Consensus       230 g~~~~kV~~~M~k-------~vitI~eDe~i~dAir~M~~~nVGRLlV~--ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         230 GNLDAKVSDYMRK-------NVITINEDEDIYDAIRLMNKNNVGRLLVT--DSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             CCccccHHHHhcc-------CCceEcCchhHHHHHHHHHhcCcceEEEE--ccCCcEEEEEehHHHHHHhh
Confidence            3356889999999       89999999999999999999999999999  78999999999999999874

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.05  E-value=5.3e-10  Score=85.61  Aligned_cols=75  Identities=25%  Similarity=0.403  Sum_probs=66.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ...+|.++|++       ++.++.+++|+.+|.+++.++++++.||+  | +++++|++|..|+..+++ +|.  .+..|
T Consensus       170 Pk~~V~~~~s~-------~~i~v~~d~tl~eaak~f~~~~i~GaPVv--d-~dk~vGiit~~dI~~aia-~g~--~~~kV  236 (294)
T COG2524         170 PKEKVKNLMSK-------KLITVRPDDTLREAAKLFYEKGIRGAPVV--D-DDKIVGIITLSDIAKAIA-NGN--LDAKV  236 (294)
T ss_pred             CcchhhhhccC-------CceEecCCccHHHHHHHHHHcCccCCcee--c-CCceEEEEEHHHHHHHHH-cCC--ccccH
Confidence            35789999999       89999999999999999999999999999  4 459999999999988774 553  58899


Q ss_pred             ccccccCC
Q 032532          132 GDIMTEEV  139 (139)
Q Consensus       132 ~~im~~~v  139 (139)
                      +++|++.+
T Consensus       237 ~~~M~k~v  244 (294)
T COG2524         237 SDYMRKNV  244 (294)
T ss_pred             HHHhccCC
Confidence            99998764

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.01  E-value=7.5e-10  Score=92.41  Aligned_cols=77  Identities=29%  Similarity=0.504  Sum_probs=71.7

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      ..+++++++.       ++++|++..++.+|...|.++|++++.++  ++++.+.||||++|+.+++++.|.+ ...+|+
T Consensus       148 ~trv~~~~~~-------~~~~v~~~~~i~~aa~km~~~gv~s~v~l--~~~~~~~GIvT~~dl~~~v~~~g~~-~~~~V~  217 (610)
T COG2905         148 LTRVGEVKTL-------PAVTVSPQASIQDAARKMKDEGVSSLVVL--DDSGPLLGIVTRKDLRSRVIADGRS-KTQKVS  217 (610)
T ss_pred             HHHHHHHhcC-------CCcccCccCcHHHHHHHHHhcCCCeEEEE--cCCCCccceeehHHHHHHHHhcCCC-cccchh
Confidence            4679999998       89999999999999999999999999999  7899999999999999999998887 788999


Q ss_pred             cccccCC
Q 032532          133 DIMTEEV  139 (139)
Q Consensus       133 ~im~~~v  139 (139)
                      ++|+.|+
T Consensus       218 evmT~p~  224 (610)
T COG2905         218 EVMTSPV  224 (610)
T ss_pred             hhhccCc
Confidence            9999885

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.96  E-value=4.7e-09  Score=71.83  Aligned_cols=66  Identities=17%  Similarity=0.199  Sum_probs=56.9

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++.+++++.++++.|.+++.+++||+  |++++++|++|.+|+++.+...... .+.+++++|+++
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~Gii~~~dl~~~~~~~~~~-~~~~v~~im~~~   68 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVV--DESGKILGMVTLGNLLSSLSSGKVQ-PSDPVSKALYKQ   68 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHHhccC-CCCcHHHHhhcc
Confidence            68999999999999999999999999999  6789999999999998876543333 577899999765

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.88  E-value=1.1e-08  Score=81.11  Aligned_cols=79  Identities=23%  Similarity=0.365  Sum_probs=63.9

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ...+|+|+|++..     ++.++++++|+.+|++.|.+++.+.+||+  |++|+++|+||.+|+.+.. ..+....+.+|
T Consensus       200 ~~~~V~dim~~~~-----~~~~v~~~~sl~~a~~~~~~~~~~~~vVv--d~~g~lvGivt~~Dl~~~~-~~~~~~~~~~v  271 (326)
T PRK10892        200 LLLRVSDIMHTGD-----EIPHVSKTASLRDALLEITRKNLGMTVIC--DDNMKIEGIFTDGDLRRVF-DMGIDLRQASI  271 (326)
T ss_pred             ccCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHhcCCCeEEEE--cCCCcEEEEEecHHHHHHH-hcCCCcccCCH
Confidence            4578999998511     48999999999999999999998888888  6789999999999997643 34433345689


Q ss_pred             ccccccC
Q 032532          132 GDIMTEE  138 (139)
Q Consensus       132 ~~im~~~  138 (139)
                      +++|+++
T Consensus       272 ~~im~~~  278 (326)
T PRK10892        272 ADVMTPG  278 (326)
T ss_pred             HHhcCCC
Confidence            9999875

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.85  E-value=7.9e-09  Score=68.89  Aligned_cols=55  Identities=20%  Similarity=0.310  Sum_probs=50.5

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|..       ++.++.+++++.+|++.|.+++.+.+||+  |++++++|+||.+|+++
T Consensus        56 ~~v~~~~~~-------~~~~v~~~~~l~~al~~m~~~~~~~lpVv--d~~~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYIV-------PVPIVYCDSKVTDLLRIFRETEPPVVAVV--DKEGKLVGTIYERELLR  110 (111)
T ss_pred             cChhheeec-------CCcEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCeEEEEEEhHHhhc
Confidence            469999987       78899999999999999999999999999  67799999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.85  E-value=1.2e-08  Score=80.60  Aligned_cols=75  Identities=21%  Similarity=0.372  Sum_probs=63.6

Q ss_pred             cCcHHHHhhhcCCCCCCC--cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           53 STTISDILKAKGKGADGS--WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~--~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      ..+|+++|.+       +  +.++++++++.+|++.|.+++...+||+  |++|+++|+||.+|+.+.+. .+.. .+.+
T Consensus       196 ~~~V~~im~~-------~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vv--d~~g~~iG~vt~~dl~~~~~-~~~~-~~~~  264 (321)
T PRK11543        196 LNKVHHLMRR-------DDAIPQVALTASVMDAMLELSRTGLGLVAVC--DAQQQVQGVFTDGDLRRWLV-GGGA-LTTP  264 (321)
T ss_pred             HhHHHHHhcc-------CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEecHHHHHHHHh-CCCC-cCCc
Confidence            4689999999       6  8999999999999999999999999999  78899999999999987653 3332 3566


Q ss_pred             cccccccC
Q 032532          131 VGDIMTEE  138 (139)
Q Consensus       131 v~~im~~~  138 (139)
                      +.++|+++
T Consensus       265 v~~im~~~  272 (321)
T PRK11543        265 VNEAMTRG  272 (321)
T ss_pred             HHHhcCCC
Confidence            88998765

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.82  E-value=3e-08  Score=66.11  Aligned_cols=67  Identities=33%  Similarity=0.466  Sum_probs=54.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++.+++++.+|++.|.+++++.+||+  |++ ++++|++|.+|+++++...+......++.++|..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~   69 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVE--KRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKP   69 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEE--ECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCC
Confidence            58899999999999999999999999999  566 89999999999988765544332345678887543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=2.8e-08  Score=66.46  Aligned_cols=57  Identities=21%  Similarity=0.401  Sum_probs=51.8

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ...++.++|.+       ++.++.+++++.+|++.|.+++.+.+||+  |++++++|+||.+|+++
T Consensus        57 ~~~~v~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR-------AVVSCRPGDLLHDVWQVMKQRGLKNIPVV--DENARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCeEEEE--CCCCcEEEEEEhHhhcc
Confidence            34679999988       78999999999999999999999999999  67789999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.77  E-value=3.3e-08  Score=81.44  Aligned_cols=77  Identities=22%  Similarity=0.310  Sum_probs=64.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ...+++++|.+       ++.++.+++++.++++.|.+++++.+||+  |++++++|+||.+|+++.+...+.. .+.++
T Consensus       333 ~~~~v~~im~~-------~~~~v~~~~tl~ea~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~-~~~~v  402 (454)
T TIGR01137       333 KNATVKDLHLP-------APVTVHPTETVGDAIEILREYGFDQLPVV--TEAGKVLGSVTLRELLSALFAGKAN-PDDAV  402 (454)
T ss_pred             ccCCHHHhCcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHhccCCC-cCCCH
Confidence            35789999988       89999999999999999999999999999  6778999999999998866432222 34578


Q ss_pred             ccccccC
Q 032532          132 GDIMTEE  138 (139)
Q Consensus       132 ~~im~~~  138 (139)
                      .++|.++
T Consensus       403 ~~im~~~  409 (454)
T TIGR01137       403 SKVMSKK  409 (454)
T ss_pred             HHhcCCC
Confidence            8888754

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.74  E-value=3.3e-08  Score=66.76  Aligned_cols=55  Identities=27%  Similarity=0.413  Sum_probs=50.7

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|.+       ++.++.+++++.++++.|.+++...+||+  |++++++|+||.+|+.+
T Consensus        58 ~~v~dim~~-------~~~~v~~~~~l~~a~~~~~~~~~~~lpVv--d~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR-------KPVTARPNDPLREALNLMHEHNIRTLPVV--DDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC-------CCCEECCcCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHhhc
Confidence            679999998       78999999999999999999999999999  77899999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.73  E-value=9.7e-08  Score=62.90  Aligned_cols=67  Identities=39%  Similarity=0.587  Sum_probs=54.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++.+++++.++++.|.+++++.+||+  |++++++|+++.+|+++.+...+......++.++|.++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~   68 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVV--DDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRN   68 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCC
Confidence            57889999999999999999999999999  67789999999999988765433322245677777543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.72  E-value=4.1e-08  Score=75.46  Aligned_cols=74  Identities=23%  Similarity=0.434  Sum_probs=62.8

Q ss_pred             CcHHHHhhhcCCCCCCC-cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           54 TTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~-~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      .+|+++|.+       + +.++.+++++.++++.|.+.+.+.+||+  |++++++|+|+..|+++.+. .+.. ...++.
T Consensus       155 ~~v~~im~~-------~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vv--d~~g~~~Givt~~dl~~~~~-~~~~-~~~~v~  223 (268)
T TIGR00393       155 VKVKDLMQT-------TDLPLIAPTTSFKDALLEMSEKRLGSAIVC--DENNQLVGVFTDGDLRRALL-GGGS-LKSEVR  223 (268)
T ss_pred             hhHHHHhCC-------CCCCcCCCCCcHHHHHHHHhhcCCcEEEEE--eCCCCEEEEEEcHHHHHHHh-cCCc-ccCcHH
Confidence            789999998       7 8999999999999999999999999999  67899999999999987543 2332 456788


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|.++
T Consensus       224 ~im~~~  229 (268)
T TIGR00393       224 DFMTLG  229 (268)
T ss_pred             HhCCCC
Confidence            888765

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.68  E-value=7e-08  Score=64.93  Aligned_cols=56  Identities=21%  Similarity=0.368  Sum_probs=51.5

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++++++++.++++.|.+++.+.+||+  +++|+++|++|..|+++
T Consensus        68 ~~~i~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvit~~di~~  123 (124)
T cd04600          68 PETVGDIMSP-------PVVTVRPDTPIAELVPLLADGGHHHVPVV--DEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             cccHHHhccC-------CCeeeCCCCcHHHHHHHHHhcCCCceeEE--cCCCCEEEEEEhHHhhc
Confidence            4579999988       79999999999999999999999999999  67899999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.68  E-value=6.5e-08  Score=82.21  Aligned_cols=78  Identities=13%  Similarity=0.231  Sum_probs=64.2

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      +...+++|+|++       ++.++++++++.++.+.|.+++.+.+||+  |++++++|+||.+|+.+.+...+ ...+.+
T Consensus       444 L~~~~V~dim~~-------~~~~v~~~~tl~ea~~~l~~~~~~~~~Vv--D~~g~lvGiVt~~dL~~~l~~~~-~~~~~~  513 (574)
T PRK01862        444 LRTTQMRELIQP-------AQTVVPPTASVADMTRVFLEYPVKYLYVV--DDDGRFRGAVALKDITSDLLDKR-DTTDKT  513 (574)
T ss_pred             HhhCcHHHHhcC-------CCceeCCCCCHHHHHHHHHhCCCceEEEE--cCCCeEEEEEEHHHHHHHhhccc-ccccch
Confidence            346799999998       78899999999999999999999999999  78899999999999987654322 212456


Q ss_pred             cccccccC
Q 032532          131 VGDIMTEE  138 (139)
Q Consensus       131 v~~im~~~  138 (139)
                      +.++|+++
T Consensus       514 v~dim~~~  521 (574)
T PRK01862        514 AADYAHTP  521 (574)
T ss_pred             HHHhccCC
Confidence            78888764

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.68  E-value=5.6e-08  Score=76.15  Aligned_cols=62  Identities=16%  Similarity=0.321  Sum_probs=57.3

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      +...+++.+|++       +..++.++++..+++-.+.+.+..++||+  |++|+++||||..|++.++..
T Consensus       312 ~~~~~vk~imt~-------~v~tv~pdtpa~~lvp~lad~g~H~lpvl--d~~g~lvGIvsQtDliaal~r  373 (382)
T COG3448         312 LRPPTVKGIMTT-------PVVTVRPDTPAVELVPRLADEGLHALPVL--DAAGKLVGIVSQTDLIAALYR  373 (382)
T ss_pred             cCCCcccccccC-------cceeecCCCcHHHHHHHhhcCCcceeeEE--cCCCcEEEEeeHHHHHHHHHH
Confidence            456789999998       79999999999999999999999999999  899999999999999988764

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.67  E-value=1.6e-07  Score=62.74  Aligned_cols=66  Identities=21%  Similarity=0.306  Sum_probs=53.0

Q ss_pred             cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      +.++.+++++.+|++.|.+++.+.+||+  |++|+++|++|..|+++.+...+......++.++|..+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~   68 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVC--DPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRA   68 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCC
Confidence            6788999999999999999999999999  78899999999999987653312222356677777543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.67  E-value=1.6e-07  Score=62.49  Aligned_cols=65  Identities=22%  Similarity=0.315  Sum_probs=52.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.++++.|.+.+.+.+||+  |++++++|+++.+|+++.+. ++......++.++|..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~~~~~~~~~~~~~~~~   66 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVV--DRDGGVVGIITLPDLLRALE-ADEAGEPSAVDEVATP   66 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEE--cCCCCEEEEEEHHHHHHHHh-cccccccccHHHhccC
Confidence            67899999999999999999999999999  67899999999999987664 2222123446666654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.66  E-value=1.2e-07  Score=62.94  Aligned_cols=56  Identities=16%  Similarity=0.293  Sum_probs=50.9

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++++++++.++++.|.+++.+.+||+  +++++++|+||.+|++.
T Consensus        57 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR-------NPITAKVGSSREEILALMRERSIRHLPIL--DEEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC-------CCEEEcCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEhHHhcc
Confidence            3579999987       78899999999999999999999999999  67899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.64  E-value=2.4e-07  Score=61.18  Aligned_cols=65  Identities=35%  Similarity=0.539  Sum_probs=52.9

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++.+++++.++++.|.+.+.+.+||+  |++++++|+++..|+++.+. .+.. ...++.++|..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~l~~~~~-~~~~-~~~~v~~~~~~~   66 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVV--DPDERPIGIVTERDIVRAVA-AGID-LDTPVSEIMTRD   66 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEeeHHHHHHHHh-ccCC-CccCHHHhccCC
Confidence            57889999999999999999999999999  67799999999999987654 3322 345677777543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.64  E-value=1.6e-07  Score=62.32  Aligned_cols=66  Identities=23%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCc----cCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK----STKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~----~~~v~~im~~  137 (139)
                      .+.++++++++.++++.|.+++++.+||+  |++++++|+++.+|+++.+........    ..++.++|.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~   71 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVL--DKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT   71 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeE--CCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC
Confidence            57889999999999999999999999999  778999999999999876532211101    3567777764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.62  E-value=1.4e-07  Score=62.84  Aligned_cols=55  Identities=18%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++++++++.+|++.|.+++...+||+  ++ ++++|+||..|+++
T Consensus        59 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          59 RVNVYEIMTK-------PLISVSPDMDIKYCARLMERTNIRRAPVV--EN-NELIGIISLTDIFL  113 (114)
T ss_pred             ccCHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCEeeEe--eC-CEEEEEEEHHHhhc
Confidence            4679999987       78999999999999999999999999999  55 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.62  E-value=1.7e-07  Score=62.33  Aligned_cols=56  Identities=16%  Similarity=0.347  Sum_probs=49.7

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCC--CCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~--~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++.++  +++.+|++.|.+++.+.+||+  |++|+++|+||.+|+++
T Consensus        57 ~~~i~~~~~~-------~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ-------PVVTLQESEIQDIFTALSLFRQHQIRHLPVL--DDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC-------CcEEEecccccCHHHHHHHHHHhCCceEEEE--cCCCCEEEEEEhHHhhc
Confidence            3679999987       67888877  789999999999999999999  67799999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.61  E-value=1.8e-07  Score=61.76  Aligned_cols=57  Identities=28%  Similarity=0.389  Sum_probs=51.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ..++.++|.+       ++.++.+++++.++++.|.+++...+||+  +++++++|++|..|+++.
T Consensus        52 ~~~v~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT-------DVISVSADDDQEEVARLFEKYDLLALPVV--DEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC-------CCeEEcCCCCHHHHHHHHHHcCCceeeeE--CCCCcEEEEEEhHHhhhh
Confidence            4579999987       78999999999999999999999999999  678999999999999764

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.61  E-value=2.3e-07  Score=61.16  Aligned_cols=66  Identities=15%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++.+++++.++++.|.+++++.+||+  |++++++|+++..|+.+... .+......++.++|.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~v~~~~~~~   67 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVV--DDDGRLVGIVSLDDIREILF-DPSLYDLVVASDIMTKP   67 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEE--CCCCCEEEEEEHHHHHHHHh-cccccccEEHHHhccCC
Confidence            57889999999999999999999999999  67789999999999987553 33322236677887654

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.60  E-value=2.4e-07  Score=61.11  Aligned_cols=56  Identities=25%  Similarity=0.375  Sum_probs=51.2

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++.+++++.++++.|.+++...+||+  +++++++|++|..|+++
T Consensus        52 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK-------NPITVNPKTSVASVAHMMIWEGIEMLPVV--DDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC-------CCeEECCCCCHHHHHHHHHHcCCCeeeEE--cCCCCEEEEEEHHHhhc
Confidence            4579999987       78999999999999999999999999999  67889999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=8.7e-08  Score=63.08  Aligned_cols=55  Identities=20%  Similarity=0.286  Sum_probs=46.9

Q ss_pred             CcHHHHhhhcCCCCCCC-cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~-~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~  117 (139)
                      .+..|+...       - +.++.+++++.+|++.|.+++++.+||+  +++ |+++|++|.+|++.
T Consensus        41 vt~~Dl~~~-------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~~~giit~~d~~~   97 (98)
T cd04618          41 LTITDFILI-------LRLVSIHPERSLFDAALLLLKNKIHRLPVI--DPSTGTGLYILTSRRILK   97 (98)
T ss_pred             EEHHHHhhh-------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEE--ECCCCCceEEeehhhhhc
Confidence            456666544       2 6889999999999999999999999999  555 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=1.6e-07  Score=63.13  Aligned_cols=59  Identities=24%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC---CceEEEEeHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLR  117 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~---~~lvGivt~~dll~  117 (139)
                      ...++.++|.+..     ++.++.+++++.++++.|.+++...+||+  |++   ++++|+||..|+++
T Consensus        56 ~~~~~~~~~~~~~-----~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMP-----NITTTTPEESVLEAAKKLIEHQVDSLPVV--EKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCC-----CcEEECCCCcHHHHHHHHHHcCCCEeeEE--eCCCccceEEEEEEhhheec
Confidence            3567999997411     47899999999999999999999999999  454   79999999999854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=2.7e-07  Score=61.03  Aligned_cols=66  Identities=27%  Similarity=0.301  Sum_probs=52.5

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++.+++++.++++.|.+++.+.+||+  |++++++|+++.+|+++.....+. ....++.++|.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~dl~~~~~~~~~-~~~~~i~~~~~~~   67 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVV--DDKKRLVGIITRYDVLSYALESEE-LKDAKVREVMNSP   67 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEE--cCCCCEEEEEEHHHHHHhhhhhhh-hcCCcHHHhccCC
Confidence            46888999999999999999999999999  678999999999999875443222 2345677777543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=1.7e-07  Score=63.31  Aligned_cols=45  Identities=22%  Similarity=0.311  Sum_probs=42.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll  116 (139)
                      ++.++.+++++.+|++.|.+++.+.+||+  |++++++|+||.+|+.
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~vGiit~~di~  121 (123)
T cd04627          77 DVISINGDQPLIDALHLMHNEGISSVAVV--DNQGNLIGNISVTDVR  121 (123)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCceEEEE--CCCCcEEEEEeHHHhh
Confidence            78999999999999999999999999999  6778999999999983

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.58  E-value=1.9e-07  Score=61.67  Aligned_cols=55  Identities=20%  Similarity=0.347  Sum_probs=49.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++.+++++.+|++.|.+++...+||+  + +++++|++|.+|+++
T Consensus        57 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP-------EPIVASPDDSIDEVRRLMVERHLRYLPVL--D-GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC-------CCeEECCCCCHHHHHHHHHHcCCCeeeEE--E-CCEEEEEEEHHHhhc
Confidence            4579999987       78899999999999999999999999999  4 589999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.57  E-value=2.6e-07  Score=60.44  Aligned_cols=56  Identities=27%  Similarity=0.472  Sum_probs=50.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ...+.++|..       ++.++.+++++.++++.|.+++...+||+  +++|+++|+++..|+++
T Consensus        51 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK-------DLVVAVPEMDIMDAARVMFRTGISKLPVV--DENNNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC-------CCeEECCCCCHHHHHHHHHHhCCCeEeEE--CCCCeEEEEEEHHHhhc
Confidence            3569999987       78999999999999999999999999999  67889999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.57  E-value=1.8e-07  Score=61.84  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=50.2

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|.+       ++.++.+++++.++++.|.+++...+||+  +++++++|+||..|++.
T Consensus        58 ~~v~~i~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP-------NPVCATSDTPVLEALHLMVQGKFRHLPVV--DKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC-------CCeEEcCCCCHHHHHHHHHHcCCCcccEE--CCCCCEEEEEEHHHhcc
Confidence            579999987       78899999999999999999999999999  66799999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.57  E-value=2.3e-07  Score=61.80  Aligned_cols=56  Identities=20%  Similarity=0.347  Sum_probs=50.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC--CceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~--~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++.+++++.++++.|.+++...+||+  |++  |+++|+||.+|+++
T Consensus        57 ~~~~~~~~~~-------~~~~v~~~~~l~~~l~~~~~~~~~~~~Vv--d~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          57 PSAVDEVATP-------PLLTVHPDEPLAHALDRMASRGLRQLPVV--DRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             cccHHHhccC-------CceEECCCCCHHHHHHHHHHcCCceeeEE--eCCCCCeEEEEEEhHHhhc
Confidence            3458899988       79999999999999999999999999999  454  79999999999865

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.56  E-value=3.4e-07  Score=60.47  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=50.5

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|.+       ++.++.+++++.++++.|..++...+||+  +++++++|+||..||++
T Consensus        59 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~iG~it~~di~~  113 (114)
T cd04604          59 LPVADVMTR-------NPKTIDPDALAAEALELMEENKITALPVV--DDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             CCHHHhhcc-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCCEEEEEEHHHhhc
Confidence            479999988       78899999999999999999999999999  66899999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=4.4e-07  Score=60.90  Aligned_cols=64  Identities=31%  Similarity=0.518  Sum_probs=52.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT  136 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~  136 (139)
                      ++.++.+++++.+|++.|..++.+++||+  |++++++|+||..|++++... +......+++++|.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~Givt~~dl~~~~~~-~~~~~~~~~~~~~~   65 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVV--DEDGDLVGVVSRKDLLKASIG-GADLQKVPVGVIMT   65 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHHHHHc-CCCccCCCHHHHhC
Confidence            57899999999999999999999999999  678999999999999887643 22223455667775

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=3.5e-07  Score=60.48  Aligned_cols=57  Identities=25%  Similarity=0.458  Sum_probs=51.3

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ...++.++|..       ++.++.+++++.++++.|.+++...+||+  +++|+++|++|..|+++
T Consensus        56 ~~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS-------PVITIDANDSIAKARWLMSNNNISRLPVL--DDKGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC-------CceEECCCCcHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEEHHHhhc
Confidence            34679999987       78999999999999999999999999999  67889999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=2.7e-07  Score=62.08  Aligned_cols=56  Identities=34%  Similarity=0.557  Sum_probs=50.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++.+++++.++++.|.+.+.+.+||+  +++++++|+||..|+++
T Consensus        69 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR-------NVITITPDDSIKDAAELMLEKRVGGLPVV--DDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC-------CceEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCcEEEEEEHHHhhc
Confidence            3579999987       79999999999999999999999999999  56689999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.55  E-value=4e-07  Score=60.04  Aligned_cols=56  Identities=23%  Similarity=0.433  Sum_probs=50.9

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ...++.++|..       ++.++.+++++.++++.|.+++.+.+||+  + +|+++|+||..|+++
T Consensus        54 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST-------DVVTVPPDTPLSEVQELMVEHDIGRVPVV--E-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC-------CCEEECCCCcHHHHHHHHHHcCCCeeEEE--e-CCEEEEEEEhHHhhc
Confidence            45689999988       78999999999999999999999999999  5 789999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=3.4e-07  Score=60.54  Aligned_cols=66  Identities=24%  Similarity=0.369  Sum_probs=52.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC-CCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-SSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~-~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.+|++.|.+++.+.+||+  +++++++|+++..|+++.+..... .....++.++|..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~   68 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVV--DDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT   68 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEE--CCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc
Confidence            57889999999999999999999999999  778999999999999886653221 1124567777754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=3.2e-07  Score=61.51  Aligned_cols=56  Identities=34%  Similarity=0.560  Sum_probs=51.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++.+++++.++++.|.+++.+.+||+  +++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMST-------PVYSVTPDDSIATAVELMLEHDIGRLPVV--NEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcC-------CCeeECCCCCHHHHHHHHHHcCCCeeeEE--cCCCcEEEEEEhHHhhc
Confidence            4678999987       78999999999999999999999999999  67799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.54  E-value=2.9e-07  Score=72.92  Aligned_cols=56  Identities=18%  Similarity=0.361  Sum_probs=51.4

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ..++.++|++       ++.++.+++++.+|++.|.+++.+.+||+   ++++++|+||+.|++++
T Consensus       268 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv---~~~~lvGiit~~dil~~  323 (326)
T PRK10892        268 QASIADVMTP-------GGIRVRPGILAVDALNLMQSRHITSVLVA---DGDHLLGVLHMHDLLRA  323 (326)
T ss_pred             cCCHHHhcCC-------CCEEECCCCCHHHHHHHHHHCCCcEEEEe---eCCEEEEEEEhHHhHhc
Confidence            4689999998       89999999999999999999999999999   36799999999999764

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.54  E-value=4e-07  Score=71.84  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=52.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ..++.++|++       ++.++.+++++.+|++.|.+++...+||+  |++++++|+||++|++++
T Consensus       262 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTR-------GGTTLQAQSRAIDAKEILMKRKITAAPVV--DENGKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHhc
Confidence            4569999998       78999999999999999999999999999  677899999999999764

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.54  E-value=3.9e-07  Score=60.64  Aligned_cols=56  Identities=32%  Similarity=0.479  Sum_probs=51.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++++++++.++++.|.+.+.+.+||+  +++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR-------DPITVSPDASVEEAAELMLERKISGLPVV--DDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC-------CCeEeCCCCcHHHHHHHHHHcCCCceeEE--CCCCcEEEEEEHHHhhh
Confidence            4679999988       78999999999999999999999999999  66789999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.54  E-value=4.2e-07  Score=59.42  Aligned_cols=54  Identities=20%  Similarity=0.206  Sum_probs=49.0

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ++.++|.+       .+.++.+++++.++++.|.+++.+.+||+  |++++++|++|.+++++
T Consensus        52 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP-------FKVTVSVDDDLRIVLSRMFAHDMSWLPCV--DEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc-------CCEEECCCCCHHHHHHHHHHCCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            58888887       67889999999999999999999999999  67789999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=4.7e-07  Score=60.84  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++++++++.+|++.|.+++++.+||+  |++++++|+++.+|+++..
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv--~~~~~~~Giv~~~dl~~~~   49 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIV--DENGKVVDVYSRFDVINLA   49 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEE--CCCCeEEEEEeHHHHHHHH
Confidence            58899999999999999999999999999  6789999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.53  E-value=4.9e-07  Score=60.12  Aligned_cols=64  Identities=22%  Similarity=0.276  Sum_probs=51.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++++++++.+|++.|.+.+.+.+||+  |++++++|++|..|+.+..  .+ ...+.++.++|..+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~--~~-~~~~~~v~~~~~~~   65 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVV--DEENKVLGQVTLSDLLEIG--PN-DYETLKVCEVYIVP   65 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCCEEEEEEHHHHHhhc--cc-cccccChhheeecC
Confidence            47889999999999999999999999999  7789999999999997632  11 11245677888654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=5.4e-07  Score=61.22  Aligned_cols=66  Identities=30%  Similarity=0.407  Sum_probs=51.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH-----HHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK-----IIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~-----~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.+|++.|.+++...+||+  |++++++|+++..|+.+.     +...+....+.++.++|++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~   72 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVV--DSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP   72 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc
Confidence            57889999999999999999999999999  678999999999999752     2221112234567888864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.52  E-value=2.6e-07  Score=63.49  Aligned_cols=55  Identities=20%  Similarity=0.385  Sum_probs=50.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++..+.+++++.++++.|.+++.+.+||+  | +|+++|++|..|+++
T Consensus        80 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vv--d-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTR-------PVVTVGEDTPLAEVAELMEEHRIKRVPVV--R-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCC-------CceEeCCCCcHHHHHHHHHHcCCCccCEe--c-CCEEEEEEEhHhhhc
Confidence            4679999987       78999999999999999999999999999  6 799999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.52  E-value=4.6e-07  Score=59.32  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=50.2

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|..       .+.++++++++.++++.|.+++...+||+  +++|+++|++|.+|+++
T Consensus        54 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~vv--~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE-------DVFTVQPDASLRDVLGLVLKRGPKYVPVV--DEDGKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC-------CceEECCCCcHHHHHHHHHHcCCceeeEE--CCCCeEEEEEehHHhhc
Confidence            568899987       78999999999999999999999999999  67889999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.51  E-value=5.3e-07  Score=62.50  Aligned_cols=49  Identities=22%  Similarity=0.344  Sum_probs=44.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++.++.+++++.+|++.|.+.+.+.+||+  |++++++|+++..|+++...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~--d~~~~~~Giv~~~dl~~~~~   50 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVV--DDNGKPVGVITYRDLAFAEF   50 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEE--CCCCCEEEEEeHHHHHHHhh
Confidence            57889999999999999999999999999  77899999999999988653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.51  E-value=2.7e-07  Score=61.34  Aligned_cols=58  Identities=24%  Similarity=0.454  Sum_probs=49.4

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+..     .+.++.+++++.+|++.|.+++.+.+||+  +++++++|++|.+|+++
T Consensus        56 ~~~v~~~~~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAA-----KLVTVLSEESLAEVLKLLEEQGLDELAVV--EDSGQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccc-----cceEECCCCcHHHHHHHHHHCCCCeeEEE--cCCCcEEEEEeccceec
Confidence            457889997511     35689999999999999999999999999  66789999999999853

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.51  E-value=5.8e-07  Score=59.04  Aligned_cols=57  Identities=26%  Similarity=0.533  Sum_probs=51.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ...++.++|.+       ++.++.+++++.++++.|.+.+...+||+  |++|+++|++|.+|+++
T Consensus        54 ~~~~v~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS-------PLLTVPADTSLYDARQLMREHGIRHLVVV--DDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC-------CceEECCCCCHHHHHHHHHHcCCeEEEEE--CCCCcEEEEEEhHHhhc
Confidence            34679999987       78999999999999999999999999999  67789999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.50  E-value=4.9e-07  Score=60.23  Aligned_cols=55  Identities=16%  Similarity=0.314  Sum_probs=48.4

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecC--CCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~--~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|..       ++.++..  ++++.++++.|.+++...+||+  +++++++|+||.+|+++
T Consensus        57 ~~v~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv--~~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTP-------REVLVVAPTGITLEEANEILRESKKGKLPIV--NDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCC-------CceEEECCCCCCHHHHHHHHHhcCCCceeEE--CCCCeEEEEEEHHHhhc
Confidence            469999987       6667755  9999999999999999999999  67889999999999853

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.50  E-value=3.2e-07  Score=60.70  Aligned_cols=55  Identities=29%  Similarity=0.426  Sum_probs=49.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++.+++++.++++.|.+++.+.+||+  ++ |+++|++|.+|+++
T Consensus        59 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT-------EVLTVSPDDSIVDLAQLMLKAKPKRYPVV--DD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc-------CceEECCCCcHHHHHHHHHHhCCCccCEE--EC-CEEEEEEEHHHHhc
Confidence            4679999987       78999999999999999999999999999  45 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.50  E-value=9.4e-07  Score=58.30  Aligned_cols=66  Identities=27%  Similarity=0.381  Sum_probs=52.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++.+++++.++++.|.+++.+.+||+  ++ ++++|+++..|+++.+...+......++.++|..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~   67 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVM--DG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPN   67 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCC
Confidence            57889999999999999999999999999  55 99999999999986655444332225677777543

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.49  E-value=7.3e-07  Score=58.38  Aligned_cols=64  Identities=34%  Similarity=0.455  Sum_probs=50.8

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.++++.|.+++.+.+||+  ++ ++++|++|..|+.+.+.. +......++.++|.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~dl~~~~~~-~~~~~~~~~~~~~~~   65 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVV--DD-GRVVGSIDESDLLDALIE-GKAKFSLPVREVMGE   65 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEe--eC-CeeEEEEeHHHHHHHHhc-cccccCcCHHHHhcC
Confidence            57889999999999999999999999999  55 899999999999886532 222123456666654

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=1e-06  Score=58.17  Aligned_cols=65  Identities=37%  Similarity=0.652  Sum_probs=50.9

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.+|.+.|.+.+.+++||+  ++ ++++|+++..|++......+......++.++|..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~   66 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVC--EN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR   66 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC
Confidence            57889999999999999999999999999  55 9999999999987444434433222347777754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.49  E-value=2.8e-07  Score=75.56  Aligned_cols=78  Identities=12%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      .+...+|+|+|++..     ++.+++.++++.++++.+.+++++.+||++ ++.++++|+|+.+|++....  +   ...
T Consensus       187 ~l~~~~v~diMtpr~-----~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~-~~~d~ivGiv~~kDll~~~~--~---~~~  255 (408)
T TIGR03520       187 SFGNTDTKQVMRPRL-----DIFALDIETSFSEIIPKIIENGYSRIPVYK-ETIDNITGVLYIKDLLPHLN--K---KNF  255 (408)
T ss_pred             ccCCCEeeeeCCchH-----hEEEEECCCCHHHHHHHHHhCCCCEEEEEc-CCCCceEEEEEHHHHHhHhc--c---CCC
Confidence            456789999999854     689999999999999999999999999994 23479999999999986431  1   123


Q ss_pred             ccccccccC
Q 032532          130 KVGDIMTEE  138 (139)
Q Consensus       130 ~v~~im~~~  138 (139)
                      ++.++|+++
T Consensus       256 ~l~~~~~~~  264 (408)
T TIGR03520       256 DWQSLLREP  264 (408)
T ss_pred             CHHHHcCCC
Confidence            456666654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=6.1e-07  Score=62.20  Aligned_cols=55  Identities=31%  Similarity=0.471  Sum_probs=49.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++..+.+++++.++++.|.+++.+.+||+  ++ ++++|+||..|+++
T Consensus        80 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE-------EIITVSPNDDVVDAAKLMLEANISGLPVV--DN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC-------CCeEECCCCCHHHHHHHHHHcCCCEEEEE--eC-CEEEEEEEHHHHhh
Confidence            4579999987       78899999999999999999999999999  44 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=4.3e-07  Score=61.04  Aligned_cols=46  Identities=35%  Similarity=0.467  Sum_probs=42.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ++.++.+++++.++++.|.+++.+.+||+  |++++++|+||..|+++
T Consensus        74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~~~Givt~~di~~  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVV--DENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCeEEcCCCcHHHHHHHHHhcCccEEEEE--CCCCCEEEEEEHHHhhc
Confidence            57899999999999999999999999999  66789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=7.6e-07  Score=59.64  Aligned_cols=56  Identities=30%  Similarity=0.579  Sum_probs=50.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++.+++++.++++.|.+++.+.+||+  +++++++|++|..|+++
T Consensus        66 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          66 DVPVAEVMKT-------DVLTVTPDTPLREAAEIMVENKIGCLPVV--DDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CcCHHHhhCC-------CCeEeCCCCcHHHHHHHHHHcCCCeEEEE--cCCCCEEEEEEHHHhhc
Confidence            4679999987       78999999999999999999999999999  66689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.49  E-value=8.5e-07  Score=61.78  Aligned_cols=50  Identities=20%  Similarity=0.323  Sum_probs=46.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ++.++.+++++.+|++.|.+++.+.+||+  |++++++|++|.+|+++++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~Vv--D~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVV--DSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHhh
Confidence            58899999999999999999999999999  778999999999999987753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=5.9e-07  Score=59.21  Aligned_cols=56  Identities=14%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++.+++++.+|++.|.+++...+||+  +++++++|++|..|+..
T Consensus        55 ~~~v~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~  110 (111)
T cd04639          55 DAPVRGVMRR-------DFPTVSPSATLDAVLRLMQQGGAPAVPVV--DGSGRLVGLVTLENVGE  110 (111)
T ss_pred             CCcHHHHhcC-------CCcEECCCCcHHHHHHHHHhcCCceeeEE--cCCCCEEEEEEHHHhhc
Confidence            3479999987       78999999999999999999999999999  66689999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=6.2e-07  Score=60.85  Aligned_cols=58  Identities=31%  Similarity=0.543  Sum_probs=50.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++.+++++.++++.|.+.+...+||++.+++++++|+||.+|+++
T Consensus        70 ~~~~~~~~~~-------~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSS-------PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcC-------CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            4579999988       789999999999999999999999999983224689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.48  E-value=6.3e-07  Score=59.07  Aligned_cols=55  Identities=29%  Similarity=0.479  Sum_probs=49.9

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++++++++.++++.|.+++.+++||+  ++ ++++|++|.+|+++
T Consensus        56 ~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA-------PPITIPPDATVFEALLLMLERGIHHLPVV--DD-GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC-------CCeEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhc
Confidence            3679999988       78999999999999999999999999999  44 89999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.48  E-value=6.3e-07  Score=58.40  Aligned_cols=54  Identities=19%  Similarity=0.341  Sum_probs=49.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll  116 (139)
                      ..++.++|.+       ++.++++++++.++++.|.+++.+.+||+  ++ ++++|++|..|++
T Consensus        50 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTR-------EVVTISPEASLLEAKRLMEEKKIERLPVL--RE-RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccC-------CCEEECCCCCHHHHHHHHHHcCCCEeeEE--EC-CEEEEEEEHHHhc
Confidence            3568999987       78999999999999999999999999999  45 9999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=5.4e-07  Score=59.27  Aligned_cols=48  Identities=13%  Similarity=0.244  Sum_probs=43.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC-CCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~-~~~lvGivt~~dll~~~  119 (139)
                      .+.++++++++.+|.+.|.+++++++||+  |+ +++++|++|..|+.+.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~~Givt~~Dl~~~~   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLW--DSRKQQFVGMLTITDFILIL   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEE--eCCCCEEEEEEEHHHHhhhe
Confidence            47899999999999999999999999999  55 48999999999997754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.48  E-value=6.3e-07  Score=58.94  Aligned_cols=55  Identities=31%  Similarity=0.430  Sum_probs=49.7

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++.+++++.++++.|.+.+...+||+  ++ ++++|+||..|+++
T Consensus        58 ~~~~~~~~~~-------~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv--~~-~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR-------NVITVTPDDTVDEAMALMTERRFRHLPVV--DG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC-------CcEEECCCCcHHHHHHHHHHcCCCEeEEE--eC-CEEEEEEEHHHhhc
Confidence            4579999987       78999999999999999999999999999  44 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.47  E-value=7.4e-07  Score=58.42  Aligned_cols=56  Identities=21%  Similarity=0.424  Sum_probs=48.9

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecC-CCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~-~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       .+..+.+ ++++.++++.|.+++.+.+||+  +++++++|+||.+|+++
T Consensus        53 ~~~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP-------ENLLTTVEGTSLEEALELLHEHKIEKLPVV--DDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc-------CceEEecCCCCHHHHHHHHHHhCCCeeeEE--cCCCCEEEEEEhhhhhc
Confidence            4579999977       5666666 9999999999999999999999  67789999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.47  E-value=1.1e-06  Score=58.19  Aligned_cols=65  Identities=23%  Similarity=0.455  Sum_probs=52.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      .+.++.+++++.++++.|.+.+.+.++|+  +++++++|++|.+|+++.+. .+.. ...++.++|.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~~~-~~~~v~~~~~~~   67 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVV--DENGRLLGTVTDGDIRRALL-KGLS-LDDPVSEVMNRN   67 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEE--CCCCCEEEEEEcHHHHHHHh-cCCC-cCCCHHHhhcCC
Confidence            46889999999999999999999999999  67899999999999987654 3332 245677777643

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.47  E-value=4.5e-07  Score=59.77  Aligned_cols=55  Identities=25%  Similarity=0.381  Sum_probs=50.5

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC-CCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~-~~~lvGivt~~dll~  117 (139)
                      .++.++|.+       ++.++.+++++.++++.|...+.+.+||+  ++ .++++|++|..|++.
T Consensus        58 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          58 VVASDIMTK-------PPVVVYPEDSLEDALKKFEDSDYEQLPVV--DDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEHHHhccC-------CCcEEcCCCCHHHHHHHHhhCCccEeeEE--eCCCCEEEEEEEhHHhhc
Confidence            689999998       79999999999999999999999999999  55 789999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.47  E-value=3.7e-07  Score=71.79  Aligned_cols=79  Identities=11%  Similarity=0.287  Sum_probs=62.3

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCcc
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS  128 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~  128 (139)
                      .+...+|+++|++..     ++.++++++++.++++.+.+++++.+||+  +++ ++++|+|+.+|++.... .+..  .
T Consensus        63 ~l~~~~V~diMtpr~-----~i~~l~~~~sl~e~~~~i~~~~~sr~PV~--~~~~d~iiGiv~~kDll~~~~-~~~~--~  132 (292)
T PRK15094         63 DIADQRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMR-SDAE--A  132 (292)
T ss_pred             ccCCCEEeEEccchH-----HEEEEeCCCCHHHHHHHHHhcCCcEEEEe--cCCCCcEEEEEEHHHHHhHhh-ccCC--c
Confidence            456789999999843     48999999999999999999999999999  444 79999999999986542 2211  2


Q ss_pred             CccccccccC
Q 032532          129 TKVGDIMTEE  138 (139)
Q Consensus       129 ~~v~~im~~~  138 (139)
                      ..+.++|.++
T Consensus       133 ~~l~~l~r~~  142 (292)
T PRK15094        133 FSMDKVLRQA  142 (292)
T ss_pred             CCHHHHcCCC
Confidence            3467777654

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.47  E-value=6.5e-07  Score=75.22  Aligned_cols=60  Identities=15%  Similarity=0.248  Sum_probs=53.4

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ...++.++|++..     ++.++++++++.+|+++|.++++..+||+  |++++++|+||.+|+++.
T Consensus       159 ~~~~V~dIMt~~~-----~~itv~~d~~l~eAl~lM~e~~i~~LPVV--D~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        159 LDTKVKDFMTPFE-----KLVTANEGTTLKEANDIIWDHKLNTLPIV--DKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCCHHHHhCCCC-----CeEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEhHHHHhc
Confidence            4568999999622     57889999999999999999999999999  778899999999999875

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.47  E-value=9.2e-07  Score=58.16  Aligned_cols=55  Identities=35%  Similarity=0.640  Sum_probs=50.1

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|..       ++.++.+++++.++++.|.+.+...+||+  +++++++|++|..|+++
T Consensus        55 ~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK-------DVITIDEDEQLYDAIRLMNKHNVGRLIVT--DDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC-------CceEECCCCCHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEEhHHhhc
Confidence            579999987       78999999999999999999999999999  66789999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.47  E-value=7.6e-07  Score=73.77  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=55.6

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...+++++|.+       ++.++++++++.+|++.|.+++...+||+  |++|+++|+||.+|+++.+..
T Consensus       193 ~~~~v~~im~~-------~~~~v~~~~~~~eal~~m~~~~~~~lpVV--D~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       193 PEEILSSIMRS-------SVFSIVGVNDQEEVARLIQKYDFLAVPVV--DNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             CCCcHHHHhCC-------CCeeECCCCCHHHHHHHHHHcCCCEEeEE--cCCCeEEEEEEHHHHHHHHHh
Confidence            34679999998       78999999999999999999999999999  788999999999999987754

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.46  E-value=3.5e-07  Score=62.20  Aligned_cols=56  Identities=21%  Similarity=0.322  Sum_probs=46.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEE--e----cCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLW--C----TTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~--v----~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++..  +    .+++++.++++.|.+++.+.+||+  |++ ++++|+||.+|+++
T Consensus        63 ~~~v~~im~~-------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVv--d~~~~~~~G~it~~di~~  125 (126)
T cd04640          63 ELTVADVMTP-------KEDLKALDLEELENASVGDVVETLKASGRQHALVV--DREHHQIRGIISTSDIAR  125 (126)
T ss_pred             heEHHHhcCc-------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEE--ECCCCEEEEEEeHHHHhh
Confidence            4679999987       4433  3    368999999999999999999999  555 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.46  E-value=1.3e-06  Score=57.36  Aligned_cols=48  Identities=27%  Similarity=0.405  Sum_probs=44.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++.+++++.++++.|.+++.+.+||+  |++|+++|++|.+|+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~   50 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVV--DEDGRLVGIVTSWDISKAV   50 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEE--CCCCcEEEEEeHHHHHHHH
Confidence            67889999999999999999999999999  6789999999999998755

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.46  E-value=6.6e-07  Score=59.05  Aligned_cols=55  Identities=33%  Similarity=0.486  Sum_probs=49.9

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|..       .+.++.+++++.++++.|...+.+.+||+  +++++++|++|..|+++
T Consensus        58 ~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTR-------GVVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccC-------CccEECCCCCHHHHHHHHHHcCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            359999988       78999999999999999999999999999  66799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.45  E-value=9.8e-07  Score=59.84  Aligned_cols=48  Identities=25%  Similarity=0.439  Sum_probs=43.8

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++..+.+++++.+|++.|.+.+.+.+||+  |++++++|++|.+|+.+.+
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv--~~~~~~~G~it~~dl~~~~   49 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVV--DDNGKLTGIVTRHDIVDFV   49 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEE--CCCCcEEEEEEHHHHHHHH
Confidence            57889999999999999999999999999  6789999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.45  E-value=1.6e-06  Score=57.21  Aligned_cols=64  Identities=30%  Similarity=0.383  Sum_probs=51.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.++++.|.+++.+.++|+  |+ ++++|+++..|+++... .+....+.++.++|.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~   65 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVR--DG-DPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATF   65 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEe--cC-CeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCC
Confidence            57889999999999999999999999999  56 89999999999987653 2222235567777764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.45  E-value=5.9e-07  Score=59.55  Aligned_cols=54  Identities=20%  Similarity=0.322  Sum_probs=47.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++.+++++.+|++.|.+.+  .+||+  +++++++|++|..|+++
T Consensus        62 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~--~~~Vv--~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNT-------DVPVIIDDADIEEILHLLIDQP--FLPVV--DDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcC-------CCceecCCCCHHHHHHHHhcCC--ceeEE--eCCCeEEEEEEHHHhhc
Confidence            4579999998       7899999999999999998865  58999  67899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.45  E-value=1.1e-06  Score=58.95  Aligned_cols=49  Identities=31%  Similarity=0.449  Sum_probs=44.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++.++.+++++.++.+.|.+++++++||+  +++|+++|+++..|+++.+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~Giv~~~~l~~~~~   51 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVV--DGDRRLVGIVTQRDLLRHAR   51 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEE--CCCCCEEEEEEHHHHHhhhc
Confidence            68899999999999999999999999999  66799999999999987653

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.44  E-value=8.4e-07  Score=74.97  Aligned_cols=59  Identities=22%  Similarity=0.301  Sum_probs=54.7

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      .+|+|+|.+       ++.++++++++.+|++.|.+++++.+||+  |++|+++|+||..|+.+.+..
T Consensus        68 ~~V~dim~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~Givt~~di~~~~~~  126 (546)
T PRK14869         68 PQVRDLEID-------KPVTVSPDTSLKEAWNLMDENNVKTLPVV--DEEGKLLGLVSLSDLARAYMD  126 (546)
T ss_pred             CcHHHhcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHh
Confidence            689999998       89999999999999999999999999999  778999999999999887653

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=8.2e-07  Score=58.59  Aligned_cols=55  Identities=22%  Similarity=0.495  Sum_probs=49.4

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++.+++++.+|++.|.+++...+||+  ++ ++++|+||..|++.
T Consensus        56 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVSQ-------DVFYVNEEDTIDEALDIMREKQIGRLPVV--DD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhcC-------CcEEEcCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEhHHhcc
Confidence            3579999987       78999999999999999999999999999  45 89999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.44  E-value=1.7e-06  Score=56.62  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=43.5

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++.+++++.++++.|.+++..++||+  +++++++|+++..|+++..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~   50 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVV--DKDNKLLGIVSLESLEQAY   50 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEE--cCCCcEEEEEEHHHHHHHh
Confidence            68889999999999999999999999999  6779999999999997643

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=1.5e-06  Score=57.28  Aligned_cols=56  Identities=29%  Similarity=0.471  Sum_probs=50.4

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++.+++++.++++.|.+++...+||+  +++|+++|++|..|+++
T Consensus        56 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR-------DLVTVDPDEPVAEAAKLMRKNNIRHHLVV--DKGGELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC-------CCEEECCCCcHHHHHHHHHHcCccEEEEE--cCCCcEEEEEEHHHhcc
Confidence            4578999988       78999999999999999999999999999  67799999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=6.7e-07  Score=58.40  Aligned_cols=56  Identities=16%  Similarity=0.367  Sum_probs=48.5

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .+..+++...      .+.++.+++++.+|++.|.+++.+.+||+  +++++++|++|.+|+++
T Consensus        40 v~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--~~~~~~~Giit~~di~~   95 (96)
T cd04614          40 ITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPII--NGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             EEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEE--CCCCcEEEEEEHHHhhc
Confidence            4677776542      47899999999999999999999999999  66789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.43  E-value=1.3e-06  Score=57.47  Aligned_cols=55  Identities=33%  Similarity=0.513  Sum_probs=49.6

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|..       ++.++.+++++.+|++.|.+++...+||+  +++|+++|++|..|+++
T Consensus        55 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~G~v~~~di~~  109 (110)
T cd04605          55 KSVEDIMTR-------NVITATPDEPIDVAARKMERHNISALPVV--DAENRVIGIITSEDISK  109 (110)
T ss_pred             cCHHHhcCC-------CCeEECCCCcHHHHHHHHHHhCCCEEeEE--CCCCcEEEEEEHHHhhh
Confidence            358899977       78999999999999999999999999999  67899999999999853

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.43  E-value=5.3e-07  Score=75.34  Aligned_cols=70  Identities=30%  Similarity=0.386  Sum_probs=59.2

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      ..++.++|.+       ++.++.+++++.+|++.|.+++++++||+  |++++++|+||.+|+...      . ...++.
T Consensus        88 ~VKv~~iMi~-------~pvtv~~d~tv~eA~~~m~~~~~s~l~VV--D~~gklvGIVT~rDL~~~------~-~~~~V~  151 (479)
T PRK07807         88 WVKSRDLVFD-------TPVTLSPDDTVGDALALLPKRAHGAVVVV--DEEGRPVGVVTEADCAGV------D-RFTQVR  151 (479)
T ss_pred             hccccccccc-------CCeEECCCCCHHHHHHHHHhcCCceEEEE--CCCCeEEEEEeHHHHhcC------c-cCCCHH
Confidence            4667888888       89999999999999999999999999999  788999999999998421      1 245688


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|+++
T Consensus       152 diMt~~  157 (479)
T PRK07807        152 DVMSTD  157 (479)
T ss_pred             HhccCC
Confidence            888764

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=8.1e-07  Score=60.74  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=49.3

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|.+       ++..+.+++++.++++.|.+.+.+.+||+  ++ ++++|++|..|+++
T Consensus        78 ~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~iGvit~~dl~~  131 (132)
T cd04636          78 KKVEEIMTK-------KVITVDEDTTIEDVARIMSKKNIKRLPVV--DD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CCHHHhccC-------CceEECCCCcHHHHHHHHHHCCCCeeEEE--EC-CEEEEEEEHHHhhc
Confidence            379999988       78999999999999999999999999999  55 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=7.1e-07  Score=59.69  Aligned_cols=55  Identities=33%  Similarity=0.512  Sum_probs=50.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++.++.+++++.++++.|.+.+.+.+||+  ++ ++++|++|..|+++
T Consensus        66 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          66 NLPVSDIMTR-------PVITIEPDTSVSDVASLMLENNIGGLPVV--DD-GKLVGIVTRTDILR  120 (121)
T ss_pred             ccCHHHHccC-------CceEECCCCcHHHHHHHHHHcCCCcccEE--EC-CEEEEEEEHHHhhc
Confidence            4579999987       78999999999999999999999999999  55 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.42  E-value=9.4e-07  Score=73.87  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=53.2

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      .++.++|++       ++.++++++++.+|++.|.+++...+||+  |++++++|+||.+||++..
T Consensus       148 ~~V~diMt~-------~~itV~~d~sL~eAl~lM~~~~i~~LPVV--D~~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        148 TQVRDVMST-------DLVTLPAGTDPREAFDLLEAARVKLAPVV--DADGRLVGVLTRTGALRAT  204 (479)
T ss_pred             CCHHHhccC-------CceEECCCCcHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHh
Confidence            569999998       89999999999999999999999999999  6788999999999998864

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.42  E-value=1.4e-06  Score=57.22  Aligned_cols=55  Identities=29%  Similarity=0.546  Sum_probs=50.1

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|.+       ++.++.+++++.++++.|.+++.+.+||+  +++++++|++|..|+++
T Consensus        56 ~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR-------DPVTASPDETLRDALKRMAERDIGRLPVV--DDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC-------CCeEECCCCCHHHHHHHHHhCCCCeeeEE--cCCCCEEEEEEHHHhhh
Confidence            368899988       89999999999999999999999999999  66799999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=1.4e-06  Score=57.42  Aligned_cols=65  Identities=18%  Similarity=0.280  Sum_probs=51.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++++++++.++++.|.+++.+.+||+  |++++++|+++.+|+++... .+.. .+.++.++|.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~dl~~~~~-~~~~-~~~~v~~~~~~~   66 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVK--DNEEKLKGVVTFTDILDLDL-FESF-LEKKVFNIVSQD   66 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEE--cCCCCEEEEEehHHhHHHHh-hccc-ccCcHHHHhcCC
Confidence            57889999999999999999999999999  67899999999999976542 2211 234566776543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=1.2e-06  Score=57.86  Aligned_cols=55  Identities=20%  Similarity=0.427  Sum_probs=49.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++..+.+++++.++++.|.+++.+.+||+  +++ +++|+||..|+++
T Consensus        57 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          57 EVPVGEVMST-------PLITIDPNASLNEAAKLMAKHGIKRLPVV--DDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             cCCHHHhcCC-------CcEEECCCCCHHHHHHHHHHcCCCeeEEe--eCC-EEEEEEEhhhhhc
Confidence            4579999987       78999999999999999999999999999  444 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.42  E-value=1.2e-06  Score=59.95  Aligned_cols=49  Identities=31%  Similarity=0.477  Sum_probs=44.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++.++.+++++.++++.|.+.+.+++||+  |++++++|+++..|+++.+.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~--d~~~~~~G~i~~~~l~~~~~   50 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVV--DNEGRVVGIVSEGDLIRKIY   50 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceE--CCCCCEEEEEeHHHHHHHHh
Confidence            68899999999999999999999999999  67899999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.42  E-value=2.1e-07  Score=63.57  Aligned_cols=58  Identities=21%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHH---------HcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT---------QHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~---------~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ...++.++|++       ++.++.+++++.++.+++.         +.+..++||+  +++|+++||||.+|++++
T Consensus        57 ~~~~v~~im~~-------~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          57 PSDPVSKALYK-------QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGK--EKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             CCCcHHHHhhc-------cceecCCCCCHHHHHhhcccCCceEEEecccccccccc--ccccceEEEEehhHhhhh
Confidence            45789999998       8999999999999999653         3357778888  677999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=1.2e-06  Score=57.20  Aligned_cols=47  Identities=34%  Similarity=0.377  Sum_probs=43.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ++.++.+++++.+|++.|.+++++.+||+  |++++++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVL--DDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHhcC
Confidence            68899999999999999999999999999  778999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.41  E-value=1e-06  Score=58.08  Aligned_cols=55  Identities=27%  Similarity=0.440  Sum_probs=49.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|..       ++..+++++++.++++.|.+++...+||+  + +++++|++|..|+++
T Consensus        56 ~~~i~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~-~~~~~G~it~~dl~~  110 (111)
T cd04589          56 STPVGEIATF-------PLITVDPDDFLFNALLLMTRHRIHRVVVR--E-GGEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCHHHHhCC-------CcEEECCCCcHHHHHHHHHHhCccEEEEe--e-CCEEEEEEEhHHhhc
Confidence            4579999987       78999999999999999999999999999  4 489999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.41  E-value=1.1e-06  Score=73.50  Aligned_cols=57  Identities=21%  Similarity=0.289  Sum_probs=53.3

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      .++.++|++       ++.++++++++.+|+++|.+++...+||+  |++++++|+||.+||++..
T Consensus       146 ~~V~dIMt~-------~litv~~~~sL~eAl~lM~~~~i~~LPVV--D~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       146 TQVRDIMST-------DLVTAPADTEPRKAFDLLEHAPRDVAPLV--DADGTLAGILTRTGALRAT  202 (475)
T ss_pred             CCHHHHccC-------CceEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence            579999998       89999999999999999999999999999  7789999999999998864

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=1.6e-06  Score=57.12  Aligned_cols=63  Identities=21%  Similarity=0.341  Sum_probs=51.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.++++.|.+.+.+.+||+  +++++++|+++..|+.+.+. .+.  ...++.++|..
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~-~~~--~~~~v~~~~~~   64 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVV--DGDGHLVGLLTRDDLIRALA-EGG--PDAPVRGVMRR   64 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEE--CCCCcEEEEeeHHHHHHHHH-hcC--CCCcHHHHhcC
Confidence            57889999999999999998999999999  67799999999999987654 222  23467777654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=8.8e-07  Score=60.10  Aligned_cols=46  Identities=24%  Similarity=0.407  Sum_probs=42.8

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ++.++++++++.+|++.|.+++.+.+||+  |++++++|+||..|+++
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~~~~~Giit~~dil~  125 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVV--DEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEE--CCCCCEEEEEEHHHHhc
Confidence            68999999999999999999999999999  67799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.41  E-value=1.8e-06  Score=56.81  Aligned_cols=64  Identities=33%  Similarity=0.610  Sum_probs=50.5

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++++++++.++.+.|.+++.+.+||+  |+ ++++|+++..|+++.+...+.. ...++.++|..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~   65 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVV--DD-GRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTA   65 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEE--EC-CEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCC
Confidence            57889999999999999999999999999  45 9999999999998755433322 23556676644

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.40  E-value=1.7e-06  Score=56.49  Aligned_cols=47  Identities=28%  Similarity=0.354  Sum_probs=42.9

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ++.++++++++.+|++.|.+++.+.+||+  |++|+++|++|..|+++.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~--d~~g~~~Giv~~~dl~~~   48 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVV--DADGQPLGFVTRREAARA   48 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEE--CCCCCEEEEEeHHHHHHh
Confidence            57889999999999999999999999999  678999999999999764

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.40  E-value=1.4e-06  Score=58.39  Aligned_cols=55  Identities=27%  Similarity=0.380  Sum_probs=50.2

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|..       ++.++.+++++.++++.|.+++...+||+  +++++++|++|..|+++
T Consensus        67 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~vv--~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR-------DPITVSPDTPVDEASKLLLENSISCLPVV--DENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC-------CCeeeCCCCcHHHHHHHHHHcCCCeEeEE--CCCCCEEEEEEHHHhhh
Confidence            468899987       79999999999999999999999999999  67789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.40  E-value=1.5e-06  Score=69.62  Aligned_cols=66  Identities=24%  Similarity=0.322  Sum_probs=59.7

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS  125 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~  125 (139)
                      ....++..+|++       +|.++.+.+|+..+.+.|...++.-+||+  +++.+++|+||++|+++++-..++.
T Consensus       246 ~~~t~ieKVMtk-------np~tv~~~tsVAsvaq~MiwE~iem~PVv--~~n~~llGiitR~dvlk~lq~~q~q  311 (432)
T COG4109         246 KPSTTIEKVMTK-------NPITVRAKTSVASVAQMMIWEGIEMLPVV--DSNNTLLGIITRQDVLKSLQMIQRQ  311 (432)
T ss_pred             CCCccHHHHhcc-------CCeeecccchHHHHHHHHHhccceeeeEE--cCCceEEEEEEHHHHHHHHHHhccC
Confidence            346789999999       99999999999999999999999999999  7899999999999999988655443

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.40  E-value=8.8e-07  Score=73.41  Aligned_cols=74  Identities=19%  Similarity=0.325  Sum_probs=60.7

Q ss_pred             cCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHH-----cCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC
Q 032532           49 HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG  123 (139)
Q Consensus        49 ~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-----~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~  123 (139)
                      ..+...+++++|++       ++.++++++|+.+|++.|.+     ++...++|+  |++++++|+|+.+|++.+     
T Consensus       126 l~~~e~tvg~iMt~-------~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv--d~~~~l~GvV~l~dLl~a-----  191 (449)
T TIGR00400       126 LSYSDDSAGRIMTI-------EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT--NESKHLKGVLSIRDLILA-----  191 (449)
T ss_pred             hCCCcchHHHhCcC-------ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEE--CCCCeEEEEEEHHHHhcC-----
Confidence            34567899999998       89999999999999999985     456788998  778999999999998642     


Q ss_pred             CCCccCccccccccC
Q 032532          124 RSSKSTKVGDIMTEE  138 (139)
Q Consensus       124 ~~~~~~~v~~im~~~  138 (139)
                      .  .+.+++++|+++
T Consensus       192 ~--~~~~v~~im~~~  204 (449)
T TIGR00400       192 K--PEEILSSIMRSS  204 (449)
T ss_pred             C--CCCcHHHHhCCC
Confidence            1  345788888764

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.39  E-value=1.4e-06  Score=57.80  Aligned_cols=62  Identities=21%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcC-CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT  136 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~-~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~  136 (139)
                      ++.++++++++.+|++.|.+++ .+.+||+  |++++++|+++.+|+++... ...  ...++.++|.
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~dl~~~~~-~~~--~~~~v~~~~~   64 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVV--DNEGRYVGIISLADLRAIPT-SQW--AQTTVIQVMT   64 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEE--cCCCcEEEEEEHHHHHHHHH-hhc--cccchhhhhc
Confidence            5788999999999999998765 8899999  67899999999999987653 211  2456677775

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.39  E-value=1.2e-06  Score=57.63  Aligned_cols=54  Identities=24%  Similarity=0.380  Sum_probs=47.0

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..+.++|.        ++.++.+++++.++++.|.+++.+.+||+  +++++++|++|..|+++
T Consensus        57 ~~~~~~~~--------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--~~~~~~~Gvit~~di~~  110 (111)
T cd04590          57 LDLRDLLR--------PPLFVPESTPLDDLLEEMRKERSHMAIVV--DEYGGTAGLVTLEDILE  110 (111)
T ss_pred             CCHHHHhc--------CCeecCCCCcHHHHHHHHHhcCCcEEEEE--ECCCCEEEEeEHHHhhc
Confidence            45666663        47889999999999999999999999999  67799999999999853

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.39  E-value=2.6e-06  Score=56.16  Aligned_cols=65  Identities=35%  Similarity=0.638  Sum_probs=50.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++++++++.++++.|.+++.+.+||+  |+ ++++|+++..|+++.+...+......++.++|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~   66 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVV--DN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST   66 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEE--EC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC
Confidence            57889999999999999999999999999  44 4999999999998866433222234567777754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.39  E-value=9.1e-07  Score=58.06  Aligned_cols=54  Identities=19%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|.+       .+.+++++.++.++++.|.+++...+||+  + +++++|++|..|+++
T Consensus        50 ~~~~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~-~~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR-------GIPYVRLTSTAEEAWEVMMKNKTRWCPVV--D-DGKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc-------CCcEEcCCCCHHHHHHHHHHcCcceEEEE--E-CCEEEEEEEHHHhhc
Confidence            357888887       78999999999999999999999999999  4 589999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.39  E-value=1.8e-06  Score=47.70  Aligned_cols=46  Identities=28%  Similarity=0.488  Sum_probs=41.6

Q ss_pred             cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      +.++.+++++.++++.|..++...+||+  +++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVV--DEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEE--CCCCeEEEEEEHHHHHHh
Confidence            5778999999999999999999999999  667899999999999764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.39  E-value=1.3e-06  Score=74.28  Aligned_cols=60  Identities=20%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      .++.|+|++       ++.++++++++.+|++.|.+++.+.+||++++++++++|+||++|+++.+.
T Consensus       512 ~~v~dim~~-------~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        512 KTAADYAHT-------PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             chHHHhccC-------CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            579999988       789999999999999999999999999994222268999999999998763

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.37  E-value=1.6e-06  Score=57.85  Aligned_cols=56  Identities=34%  Similarity=0.470  Sum_probs=50.3

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ...++.++|..       ++.++.+++++.++++.|.+++...+||+  ++ ++++|++|..|+++
T Consensus        65 ~~~~v~~~~~~-------~~~~i~~~~~l~~~~~~~~~~~~~~~~V~--~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK-------DVITVHPLDTVEEAALLMREHRIGCLPVV--ED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC-------CCeEECCCCcHHHHHHHHHHcCCCeEEEe--eC-CEEEEEEEHHHhhc
Confidence            34679999988       78999999999999999999999999999  44 89999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.37  E-value=1.3e-06  Score=57.85  Aligned_cols=52  Identities=23%  Similarity=0.410  Sum_probs=48.2

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHH-cCCCEEEEEecCCCC-ceEEEEeHHHH
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-HNVGALVVVKPGEQK-SVAGIITERDY  115 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-~~~~~lpVv~~d~~~-~lvGivt~~dl  115 (139)
                      ++.++|+.       ++.++.++.++.++.+.|.+ ++.+.+||+  ++++ +++|++|.+|+
T Consensus        63 ~v~~v~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv--~~~~~~lvGivt~~di  116 (117)
T COG0517          63 PVKEVMTK-------PVVTVDPDTPLEEALELMVERHKIRRLPVV--DDDGGKLVGIITLSDI  116 (117)
T ss_pred             cHHHhccC-------CcEEECCCCCHHHHHHHHHHHcCcCeEEEE--ECCCCeEEEEEEHHHc
Confidence            69999998       78999999999999999999 799999999  5675 99999999997

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=2.8e-06  Score=55.97  Aligned_cols=66  Identities=27%  Similarity=0.455  Sum_probs=50.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      .+.++.+++++.++++.|.+++...++|.   ++++++|+++.+|+++.+...+......++.++|..+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~   67 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVM---ERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPE   67 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEe---eCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCC
Confidence            57889999999999999988888788776   4589999999999987764322221245677777543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=1.9e-06  Score=57.68  Aligned_cols=49  Identities=33%  Similarity=0.512  Sum_probs=44.5

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++.++.+++++.++.+.|.+.+++.+||+  +++|+++|+++..|+++.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~v~~~~l~~~~~   50 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVV--NEDGKLVGLLTQRDLLRAAL   50 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEE--CCCCCEEEEEEHHHHHHHhc
Confidence            57889999999999999999999999999  67799999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.36  E-value=2e-06  Score=56.67  Aligned_cols=66  Identities=27%  Similarity=0.422  Sum_probs=52.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++++++++.++++.|.+.+.+.+||+  +++++++|+++..++++.+. ........++.++|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--d~~~~~~G~v~~~~i~~~~~-~~~~~~~~~v~~~~~~~   68 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVV--DEDGRLVGIFTDGDLRRALE-KGLDILTLPVADVMTRN   68 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEE--cCCCCEEEEechHHHHHHHh-ccCccccCCHHHhhccC
Confidence            46778999999999999998889999999  67899999999999987654 33222234677877643

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.36  E-value=1.6e-06  Score=57.14  Aligned_cols=59  Identities=31%  Similarity=0.325  Sum_probs=49.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.+|++.|.+++.+.+||+  |++++++|+++..|++...       ...++.++|..
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~-------~~~~v~~~~~~   61 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVV--DEKNKVVGIVTSKDVAGKD-------PDTTIEKVMTK   61 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEE--CCCCeEEEEecHHHHhccc-------ccccHHHHhcC
Confidence            68899999999999999999999999999  7789999999999996421       23456666653

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.35  E-value=3e-06  Score=55.67  Aligned_cols=62  Identities=26%  Similarity=0.396  Sum_probs=49.8

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++++++++.++++.|.+++++++||+  ++ ++++|+++..|+++.. ..+..  ..++.++|..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~~l~~~~-~~~~~--~~~v~~~~~~   63 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVV--DD-GKLVGIVTLSDIAHAI-ARGLE--LAKVKDVMTK   63 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEEHHHHHHHH-hcccc--ccCHHHHhcC
Confidence            68889999999999999999999999999  56 8999999999998754 23322  2456666643

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.35  E-value=2e-06  Score=72.33  Aligned_cols=62  Identities=16%  Similarity=0.238  Sum_probs=54.5

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+|.++|++..     ++.++++++++.+|++.|.+++...+||+  |++++++|+||++|+++.+.
T Consensus       161 ~~~~V~eIMt~~~-----~lvtv~~~~sL~eAl~~m~~~~~~~LPVV--D~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        161 RETKLSEVMTSDD-----DLVTAPAGIDLEEAEAVLKDSKKGKLPLV--NEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             cCCcHHHHhccCC-----CcEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHhh
Confidence            3567999999721     27899999999999999999999999999  77899999999999988763

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.35  E-value=1.4e-06  Score=73.67  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             cCcHHHHhh-hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        53 ~~~v~dvm~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ..+|+++|+ +       ++.++++++++.++.+.|.+++++.+||+  |++|+++|++|.+|+++.
T Consensus       245 ~~~V~~iM~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~PVv--d~~g~lvGiit~~dl~~~  302 (546)
T PRK14869        245 SIPVSYIMTTE-------DLVTFSKDDYLEDVKEVMLKSRYRSYPVV--DEDGKVVGVISRYHLLSP  302 (546)
T ss_pred             CCCHHHhccCC-------CcEEECCCCcHHHHHHHHHhcCCCceEEE--cCCCCEEEEEEHHHhhcc
Confidence            578999999 7       79999999999999999999999999999  788999999999999874

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.34  E-value=2.6e-06  Score=56.41  Aligned_cols=63  Identities=35%  Similarity=0.511  Sum_probs=51.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.++.++.+|...|.++++..+||+   +.++++|++|.+|+++++...+..  ..++.++|+.
T Consensus         8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~---~~~~l~Giit~~di~~~~~~~~~~--~~~v~~v~~~   70 (117)
T COG0517           8 DVITVKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRALAAGGKR--LLPVKEVMTK   70 (117)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEe---eCCEEEEEEEHHHHHHHHhccCCc--cccHHHhccC
Confidence            78999999999999999999999999999   344899999999999987543322  2257777764

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.33  E-value=1.1e-06  Score=73.78  Aligned_cols=58  Identities=22%  Similarity=0.378  Sum_probs=54.4

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...+|+++|+.       ++.++.+++-+-+|+-.|..++++++||+   ++|+++|++|..||++..
T Consensus       212 ~~~~V~evmT~-------p~~svd~~~~~feAml~m~r~~I~hl~V~---e~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         212 KTQKVSEVMTS-------PVISVDRGDFLFEAMLMMLRNRIKHLPVT---EDGQPLGILTLTDILRLF  269 (610)
T ss_pred             cccchhhhhcc-------CceeecCcchHHHHHHHHHHhCCceeeee---cCCeeeEEeeHHHHHHhh
Confidence            35789999999       89999999999999999999999999998   789999999999999864

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.33  E-value=2.2e-06  Score=57.64  Aligned_cols=49  Identities=27%  Similarity=0.330  Sum_probs=43.9

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~  120 (139)
                      ++.++.++.++.+|++.|.+++.+.+||+  +++ ++++|+|+..|+++.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~--d~~~~~~~G~v~~~dl~~~~~   51 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVV--DEGTGKLVGIITATDILKYLG   51 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeE--eCCCCEEEEEEEHHHHHHHhh
Confidence            57889999999999999999999999999  565 99999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.33  E-value=1.5e-06  Score=57.59  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=44.8

Q ss_pred             HhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        59 vm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      +|.+       ++.++++++++.++++.|.+++.+.+||+   ++|+++|+||++|+++
T Consensus        56 ~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~pVv---~~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP-------SPFTVSPRTSLEKVHQLFRKLGLRHLLVV---DEGRLVGIITRKDLLK  104 (105)
T ss_pred             hccC-------CCceECCCCcHHHHHHHHHHcCCCEEEEE---ECCeEEEEEEhhhhhc
Confidence            7776       78999999999999999999999999999   4789999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.31  E-value=3.4e-06  Score=55.29  Aligned_cols=63  Identities=29%  Similarity=0.326  Sum_probs=48.9

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.++++.|.+.+.+.+||+  ++ ++++|+++.+|+.+... .+.. ...++.++|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~G~v~~~dl~~~~~-~~~~-~~~~~~~~~~~   64 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVV--DD-GRLVGIVTLADIRRVPA-EGRE-ATVLVGDVMTR   64 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEe--eC-CeEEEEEEHHHHHHHHh-cCcc-cccCHHHhccC
Confidence            68899999999999999999999999999  56 99999999999987542 2221 11245555544

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.30  E-value=4.5e-06  Score=54.72  Aligned_cols=63  Identities=33%  Similarity=0.581  Sum_probs=50.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.+|++.|.+.+.+.+||+  ++ ++++|+++.+|+.+... .+.. ...+++++|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~-~~~~G~v~~~~l~~~~~-~~~~-~~~~v~~~~~~   64 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVV--DD-GRPLGIVTERDILRLLA-SGPD-LQTPVGEVMSS   64 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEe--eC-CEEEEEEeHHHHHHHHh-cCCC-CCcCHHHhcCC
Confidence            46789999999999999999999999999  44 89999999999987653 3332 35667777754

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.29  E-value=2.8e-06  Score=58.25  Aligned_cols=48  Identities=25%  Similarity=0.457  Sum_probs=44.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++++++++.++++.|.++++.++||+  |++++++|+++..|+++..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~~~~~~Gvi~~~dl~~~~   50 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVV--DDDGRLVGIVSEGDLLRRA   50 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEE--CCCCCEEEEeeHHHHHHHh
Confidence            68889999999999999999999999999  7789999999999997654

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.28  E-value=5.3e-06  Score=54.58  Aligned_cols=63  Identities=25%  Similarity=0.286  Sum_probs=51.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++++++++.+|.+.|.+.+.+.+||+  |+ ++++|+++..|+++.. ..+.  ...++.++|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~dl~~~~-~~~~--~~~~~~~~~~~~   65 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVV--EG-GRVVGIISRRDVEKAL-RHGL--GHAPVKDYMSTD   65 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEe--eC-CEEEEEEEHHHHHHHH-hccc--ccCcHHHHhcCC
Confidence            67899999999999999999999999999  56 9999999999997754 2322  356677777543

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.28  E-value=2.1e-06  Score=71.84  Aligned_cols=68  Identities=26%  Similarity=0.305  Sum_probs=57.2

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      ..++++|.+       ++.++++++++.++++.|.+++++.+||+  |++++++|+||.+|+...   .  . ...++.+
T Consensus        87 k~~~dim~~-------~~v~i~~~~tv~ea~~~m~~~~~~~lpVv--d~~g~lvGiVt~~DL~~~---~--~-~~~~V~d  151 (486)
T PRK05567         87 KRSESGVVT-------DPVTVTPDTTLAEALALMARYGISGVPVV--DENGKLVGIITNRDVRFE---T--D-LSQPVSE  151 (486)
T ss_pred             hhhhhcccC-------CCeEeCCCCCHHHHHHHHHHhCCCEEEEE--ccCCEEEEEEEHHHhhhc---c--c-CCCcHHH
Confidence            357788887       89999999999999999999999999999  778999999999999542   1  1 2456778


Q ss_pred             ccc
Q 032532          134 IMT  136 (139)
Q Consensus       134 im~  136 (139)
                      +|+
T Consensus       152 im~  154 (486)
T PRK05567        152 VMT  154 (486)
T ss_pred             HcC
Confidence            876

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.28  E-value=5.4e-06  Score=54.50  Aligned_cols=49  Identities=16%  Similarity=0.323  Sum_probs=44.2

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~  120 (139)
                      ++.++++++++.+|++.|.+++.+++||+  +++ ++++|+++..|+++...
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~--~~~~~~~~G~v~~~~l~~~~~   51 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVY--DGDLDNIIGVVHVKDLLRALA   51 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEE--CCCCceEEEEEEHHHHHHHHH
Confidence            57889999999999999999999999999  666 89999999999988653

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PRK11573 hypothetical protein; Provisional

Probab=98.27  E-value=3.5e-06  Score=69.24  Aligned_cols=64  Identities=16%  Similarity=0.304  Sum_probs=56.7

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      .+...+|+|+|++..     +..+++.++++.++++.+.+++++.+||.+ ++.+.++|++..+|++...
T Consensus       183 ~l~~~~v~eiMtPr~-----~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IiGiv~~kDll~~~  246 (413)
T PRK11573        183 DLEKVTVDDIMVPRN-----EIVGIDINDDWKSILRQLTHSPHGRIVLYR-DSLDDAISMLRVREAYRLM  246 (413)
T ss_pred             ccCCCChhhcCCccc-----eEEEEECCCCHHHHHHHHHhCCCceEEEEc-CCCCceEEEEEHHHHHHHh
Confidence            456789999999976     789999999999999999999999999995 3458999999999998754

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.27  E-value=2.4e-06  Score=61.58  Aligned_cols=92  Identities=18%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             hcCCCchHHHHhhhCCccccccchhhhhhcccchhhhhhcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHH
Q 032532           10 SHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ   89 (139)
Q Consensus        10 ~~~~i~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~   89 (139)
                      ...++++.+|.+.--+.+ .+..+.+.+...+..     ......+|+++|..       ++++++++.++...-+++..
T Consensus        92 ~~~g~SQlPVi~~~k~VG-sItE~~iv~~~le~~-----e~i~~~~vr~vM~e-------~fP~Vs~~~~l~vI~~LL~~  158 (187)
T COG3620          92 RDKGISQLPVIEEDKVVG-SITENDIVRALLEGM-----ESIRSLRVREVMGE-------PFPTVSPDESLNVISQLLEE  158 (187)
T ss_pred             HHcCCccCceeeCCeeee-eecHHHHHHHHhccc-----cchhhhhHHHHhcC-------CCCcCCCCCCHHHHHHHHhh
Confidence            345666777766633333 333334333221110     12235789999999       89999999999888777776


Q ss_pred             cCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           90 HNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        90 ~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      +  .++.|+   ++|+++||||..|+++.+
T Consensus       159 ~--~AVlV~---e~G~~vGIITk~DI~k~~  183 (187)
T COG3620         159 H--PAVLVV---ENGKVVGIITKADIMKLL  183 (187)
T ss_pred             C--CeEEEE---eCCceEEEEeHHHHHHHH
Confidence            5  478887   689999999999998865

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=6e-06  Score=54.73  Aligned_cols=65  Identities=32%  Similarity=0.459  Sum_probs=49.1

Q ss_pred             CcEEecCCCCHHHHHHHHHHcC-CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~-~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++.+++++.++++.|.+++ ...+||+  + +++++|+++..|+++... .+......++.++|..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~G~v~~~dl~~~~~-~~~~~~~~~i~~~~~~~   67 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVV--E-KGRLLGIFTERDIVRLTA-IGKDLSDLPIGEVMTQP   67 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEc--C-CCcEEEEEeHHHHHHHHh-cCCCccccCHHHhcCCC
Confidence            5788999999999999998888 6677777  4 589999999999987553 32222235677777543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=3.2e-06  Score=56.58  Aligned_cols=47  Identities=34%  Similarity=0.439  Sum_probs=43.4

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ++.++++++++.++++.|.+.+.+++||+  |++++++|+++..|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVV--QKAGELIGIITRRDIIRA   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEcHHHHhh
Confidence            57889999999999999999999999999  778999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=4.4e-06  Score=58.21  Aligned_cols=48  Identities=25%  Similarity=0.518  Sum_probs=43.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++.++++++++.++++.|.+.+++.+||+  |+ ++++|++|..|+++.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~dl~~~~~   49 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVL--DG-GKLVGIVSESDILKLLV   49 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEe--EC-CeEEEEecHHHHHHHHH
Confidence            68899999999999999999999999999  55 89999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=1.1e-05  Score=52.04  Aligned_cols=49  Identities=37%  Similarity=0.588  Sum_probs=44.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++.+++++.++.++.+.|..++...+||+  +++++++|+++.+|+++...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~G~v~~~~l~~~~~   50 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVV--DDDGRLVGIVTERDLLRALA   50 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEE--CCCCCEEEEEeHHHHHHHHH
Confidence            57889999999999999999999999999  67799999999999987664

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=4.2e-06  Score=56.70  Aligned_cols=48  Identities=29%  Similarity=0.387  Sum_probs=44.1

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      .+.++++++++.+|++.|.+++++.+||+  |++++++|+++..|+++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~--d~~~~~~Giv~~~dl~~~~   49 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVV--DEKGKLIGNISASDLKGLL   49 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEE--CCCCcEEEEEEHHHhhhhh
Confidence            57889999999999999999999999999  6789999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=5.6e-06  Score=55.27  Aligned_cols=48  Identities=27%  Similarity=0.410  Sum_probs=43.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++.++.+++++.++++.|.+++.+.+||+  ++ ++++|++|..|+++.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~--~~-~~~~G~v~~~~l~~~~~   49 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVI--EG-GKLVGIVTEKDIADALR   49 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEE--EC-CEEEEEEchHHHHHhhh
Confidence            57889999999999999999999999999  44 99999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.22  E-value=5.9e-06  Score=55.66  Aligned_cols=49  Identities=14%  Similarity=0.353  Sum_probs=44.1

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~  120 (139)
                      ++.++.+++++.+|++.|.++++.++||+  |++ ++++|+|+..|+++.+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~--d~~~~~~~Giv~~~dl~~~~~   51 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVT--EEESGEVIGILSQRRLVEFLW   51 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEE--eCCCCcEEEEEEHHHHHHHHH
Confidence            67889999999999999999999999999  666 89999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.22  E-value=6.8e-06  Score=54.61  Aligned_cols=60  Identities=22%  Similarity=0.253  Sum_probs=48.1

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++.+++++.++++.|.+++.+.+||+  |+   +++++|+++.+|++...  .    ...++.++|..
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~~~~G~v~~~dl~~~~--~----~~~~v~~~~~~   65 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVT--EDGKSGGKLLGIVTSRDIDFLT--D----SETPLSEVMTP   65 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEe--eCCCcCCEEEEEEEhHHhhhhh--c----cCCCHHHhcCC
Confidence            57889999999999999999999999999  54   78999999999986421  1    13456777754

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.21  E-value=3.3e-06  Score=71.04  Aligned_cols=73  Identities=26%  Similarity=0.247  Sum_probs=57.8

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      .+|+++|....    .++.++++++|+.+|++.|.+++++.+||+  |+   +++++|+||.+|+...   ..  ..+.+
T Consensus        94 ~kVk~~~~g~i----~~~~tV~pd~tl~eAl~~m~~~~~~~vpVV--D~~~~~gkLvGIVT~~DLr~~---~~--~~~~~  162 (502)
T PRK07107         94 RRVKNYKAGFV----VSDSNLTPDNTLADVLDLKEKTGHSTVAVT--EDGTAHGKLLGIVTSRDYRIS---RM--SLDTK  162 (502)
T ss_pred             HHHHHHhcCCc----CCCCEeCCCCcHHHHHHHHHhcCCCeEEEE--eCCCcCCEEEEEEEcHHhhcc---cc--CCCCC
Confidence            35788886321    146799999999999999999999999999  44   6899999999999532   11  24678


Q ss_pred             ccccccc
Q 032532          131 VGDIMTE  137 (139)
Q Consensus       131 v~~im~~  137 (139)
                      |+++|++
T Consensus       163 V~dIMt~  169 (502)
T PRK07107        163 VKDFMTP  169 (502)
T ss_pred             HHHHhCC
Confidence            9999985

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.20  E-value=3.5e-06  Score=69.96  Aligned_cols=68  Identities=24%  Similarity=0.310  Sum_probs=55.6

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC---CceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~---~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      .++++.|.+       ++.++++++|+.++++.|.+++++.+||+  |++   ++++|+||.+|++...   .   ...+
T Consensus        80 k~~~~~~~~-------~~vtl~~~~tv~eal~~m~~~~~s~lpVv--d~~~~~~~lvGIVt~rDL~~~~---~---~~~~  144 (450)
T TIGR01302        80 KRAENGIIS-------DPVTISPETTVADVLELMERKGISGIPVV--EDGDMTGKLVGIITKRDIRFVK---D---KGKP  144 (450)
T ss_pred             ccccCceec-------CceEeCCCCCHHHHHHHHHHcCCCEEEEE--eCCCCCCeEEEEEEHHHHhhhh---c---CCCC
Confidence            345666666       79999999999999999999999999999  555   7999999999996421   1   2457


Q ss_pred             cccccc
Q 032532          131 VGDIMT  136 (139)
Q Consensus       131 v~~im~  136 (139)
                      +.++|+
T Consensus       145 V~dvm~  150 (450)
T TIGR01302       145 VSEVMT  150 (450)
T ss_pred             HHHhhC
Confidence            888887

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.20  E-value=4.9e-06  Score=55.38  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=47.9

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCC---EEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVG---ALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~---~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++..+.+++++.++++.|.+++..   ..||+  +++++++|+||..|+++
T Consensus        60 ~~~v~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv--~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          60 KKPVSEVMDP-------DPLIVEADTPLEEVSRLATGRDSQNLYDGFIV--TEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCcHHHhcCC-------CcEEecCCCCHHHHHHHHHcCCcccccccEEE--eeCCeEEEEEEHHHHhc
Confidence            4579999988       789999999999999999988753   44677  57899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.20  E-value=1.8e-06  Score=69.07  Aligned_cols=72  Identities=28%  Similarity=0.360  Sum_probs=63.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      -.+|.|+|+|-.     +..++.+++++.+..++..+.+.+.+||+  |...+++|+||.+|+..+       ..+.++.
T Consensus       187 I~~Vedi~~P~~-----~~~yL~~~d~v~d~~~l~~kt~~sRfPVv--n~~~kvvGvVt~rDv~~~-------~~~t~ie  252 (432)
T COG4109         187 IITVEDIMTPLE-----DTSYLRETDTVEDWLDLVEKTGHSRFPVV--NRSMKVVGVVTMRDVLDK-------KPSTTIE  252 (432)
T ss_pred             eeeHHHhccccc-----cceeccccccHHHHHHHHHHcCCCcccee--cccceEEEEEEehhhhcC-------CCCccHH
Confidence            468999999633     68899999999999999999999999999  789999999999999653       2578899


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      .+|+++
T Consensus       253 KVMtkn  258 (432)
T COG4109         253 KVMTKN  258 (432)
T ss_pred             HHhccC
Confidence            999874

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.20  E-value=9.5e-06  Score=53.84  Aligned_cols=47  Identities=28%  Similarity=0.395  Sum_probs=42.9

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++++++++.++++.|.+.+.+.+||+  |+ ++++|+++..|+++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~i~~~~l~~~~   48 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVV--DR-GKLVGIVTDRDLKLAS   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEe--cC-CeEEEEEeHHHHHHhh
Confidence            57889999999999999999999999999  55 9999999999998765

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.19  E-value=4.5e-06  Score=65.69  Aligned_cols=58  Identities=19%  Similarity=0.287  Sum_probs=52.0

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      .++.++|.+        +.++++++++.++++.|.+++.+.+||+  |+.|.++|+||..|++..++.
T Consensus       133 ~~l~~l~r~--------~~~V~e~~~l~~~L~~m~~~~~~~a~Vv--De~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        133 FSMDKVLRQ--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             CCHHHHcCC--------CcCcCCCCcHHHHHHHHHhcCCEEEEEE--eCCCCEEEEeEHHHHHHHHhC
Confidence            458888876        5689999999999999999999999999  778899999999999998864

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=8.1e-06  Score=52.74  Aligned_cols=53  Identities=26%  Similarity=0.484  Sum_probs=48.3

Q ss_pred             HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      +.++|..       ++..+.+++++.++++.|.+.+.+.+||+  +++++++|+++..|+++
T Consensus        60 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR-------DVVTVSPDTSLEEAAELMLEHGIRRLPVV--DDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC-------CceecCCCcCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHhhc
Confidence            7788887       78999999999999999999999999999  67799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.18  E-value=5.4e-06  Score=54.26  Aligned_cols=60  Identities=27%  Similarity=0.384  Sum_probs=48.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++++++++.++++.|.+++.+.+||+  |++|+++|+++.+++++..     . ...++.++|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~-----~-~~~~v~~~~~~   62 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVV--DDDGKLVGIVTNRDLRFET-----D-LDKPVSEVMTP   62 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEE--cCCCEEEEEEEhhHeeecc-----c-CCCCHHHhccc
Confidence            68899999999999999999999999999  6779999999999985421     1 24456666643

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.16  E-value=7.2e-06  Score=53.64  Aligned_cols=54  Identities=26%  Similarity=0.363  Sum_probs=47.9

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++.++|..       ++.++.+++++.++++.|.+++...+||+  + +++++|++|..|+++
T Consensus        52 ~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv--d-~~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR-------DPPTVSPDDDVKEAAKLMVENNIRRVPVV--D-DGKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC-------CCceECCCCCHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHhhc
Confidence            467888887       78999999999999999999999999999  4 479999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.16  E-value=7.5e-06  Score=53.21  Aligned_cols=45  Identities=36%  Similarity=0.434  Sum_probs=40.9

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ++.++.+++++.++++.|.+++.+.+||+  | +++++|+++..|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d-~~~~~Giv~~~~l~~   46 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVV--E-DGKLVGIITSRDVRR   46 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEehHHhhc
Confidence            57889999999999999999999999999  5 589999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.15  E-value=5.5e-06  Score=55.15  Aligned_cols=66  Identities=18%  Similarity=0.261  Sum_probs=49.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcC-CCEEEEEecCCCCceEEEEeHHHHHHHHHHc--CCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERDYLRKIIVQ--GRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~-~~~lpVv~~d~~~~lvGivt~~dll~~~~~~--~~~~~~~~v~~im~~~  138 (139)
                      ++.++++++++.++++.|...+ .+.+||+  |+ ++++|+++..|+++.+...  .......++.++|.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv--d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~   70 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVV--DD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPD   70 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEE--EC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCC
Confidence            5678899999999999998877 8899999  66 9999999999997654210  0001244577777643

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.14  E-value=1e-05  Score=56.38  Aligned_cols=55  Identities=25%  Similarity=0.437  Sum_probs=49.5

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++.+++++.++++.|.+.+...+||+  ++ ++++|++|.+|++.
T Consensus        88 ~~~v~~~~~~-------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTK-------KVITISPDASIEDAAELMVRHKIKRLPVV--ED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHhhc
Confidence            4578999988       79999999999999999999999999999  45 89999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.13  E-value=7.3e-06  Score=68.84  Aligned_cols=60  Identities=15%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|+++.     ++.+++++.++.+|+++|.+++...+||+  |++++++|+||.+|+++..
T Consensus       158 ~~~V~diMt~~~-----~lvtv~~~~sl~eAl~lm~e~~i~~LPVV--d~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        158 STPVSEVMTPRE-----KLVVGNTPISLEEANEVLRESRKGKLPIV--NDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             CCCHHHhhCCcC-----CceEeCCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEehHhhhcc
Confidence            467999998632     57899999999999999999999999999  7889999999999998763

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.13  E-value=1e-05  Score=52.86  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=45.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..++.++|.+       ++.++++++++.++.+.|.+ . ..+||+  +++++++|++|.+|+++
T Consensus        56 ~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~-~-~~~~vv--~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE-------PLPTVDPDAPIEELSELLDR-G-NVAVVV--DEGGKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC-------CCceeCCCCcHHHHHHHHHh-C-CceeEE--ecCCeEEEEEeHHHhhc
Confidence            3579999987       78999999999999999988 3 347888  67799999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.12  E-value=6.7e-06  Score=69.23  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=51.4

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++++++|+.+|++.|.+++++.+||+  |+   +++++|+||.+|+...   .   ..+.+|.++|+++
T Consensus       109 dpvtV~pd~tV~dA~~lm~~~~~~~lpVv--D~~~~~GklvGIVT~~DL~~v---~---~~~~~V~eIMt~~  172 (505)
T PLN02274        109 DPVVKSPSSTISSLDELKASRGFSSVCVT--ETGTMGSKLLGYVTKRDWDFV---N---DRETKLSEVMTSD  172 (505)
T ss_pred             CCeeeCCCCcHHHHHHHHHhcCCceEEEE--eCCCcCCeEEEEEEHHHHhhc---c---ccCCcHHHHhccC
Confidence            79999999999999999999999999999  44   4899999999999532   1   2367788898753

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.12  E-value=7.9e-06  Score=68.31  Aligned_cols=69  Identities=28%  Similarity=0.365  Sum_probs=57.2

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      ..++.++|.+       ++.++.+++++.++++.|.+++++.+||+  | +++++|+||.+|+..      .. ...++.
T Consensus        87 ~VKv~eim~~-------~pvtv~p~~tI~eA~~lm~~~~~~~~vVv--D-~gklvGIVT~rDL~~------~~-~~~~V~  149 (475)
T TIGR01303        87 FVKSRDLVLD-------TPITLAPHDTVSDAMALIHKRAHGAAVVI--L-EDRPVGLVTDSDLLG------VD-RFTQVR  149 (475)
T ss_pred             hcchhhcccc-------CCeEECCCCCHHHHHHHHHhcCCeEEEEE--E-CCEEEEEEEHHHhhc------CC-CCCCHH
Confidence            4678888888       89999999999999999999999999998  4 478999999999842      12 246788


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|+++
T Consensus       150 dIMt~~  155 (475)
T TIGR01303       150 DIMSTD  155 (475)
T ss_pred             HHccCC
Confidence            888765

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.12  E-value=9e-06  Score=67.52  Aligned_cols=58  Identities=19%  Similarity=0.380  Sum_probs=53.3

Q ss_pred             cCcHHHHhh-hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|+ .       ++.++++++++.++++.|.+++...+||+  |++++++|+||.+|+++..
T Consensus       142 ~~~V~dvm~~~-------~~~~V~~~~sl~eal~~m~~~~~~~lpVV--De~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTRE-------EVITVPEGIDLEEALKVLHEHRIEKLPVV--DKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCCC-------CCEEECCCCcHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEhHHhhhcc
Confidence            467999998 4       68999999999999999999999999999  7899999999999998865

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.10  E-value=6.1e-06  Score=69.32  Aligned_cols=60  Identities=23%  Similarity=0.307  Sum_probs=50.5

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++++++|+.+|+++|.+++++.+||+  |+   +++++|+||.+|+...   .  . .+.++.++|++
T Consensus       105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVv--d~~~~~gkLvGIVt~~DL~~~---~--~-~~~~V~diMt~  167 (495)
T PTZ00314        105 DPYVLSPNHTVADVLEIKEKKGFSSILIT--VDGKVGGKLLGIVTSRDIDFV---K--D-KSTPVSEVMTP  167 (495)
T ss_pred             CCeecCCCCCHHHHHHHHHHcCCcEEEEE--eCCccCCeEEEEEEHHHHhhc---c--c-CCCCHHHhhCC
Confidence            89999999999999999999999999999  44   4899999999998521   1  1 35678888875

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.07  E-value=1.5e-05  Score=66.15  Aligned_cols=64  Identities=20%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             hcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        48 ~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..+.....++++|.+       .++++.+++...++.+.+.+++.-++|||  |++++++|++|..|++.-+-
T Consensus       190 l~a~~~~~i~~im~~-------~~~~V~~~~dqeevA~~~~~ydl~a~PVV--d~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         190 LTAEPDELLKDLMED-------DVVSVLADDDQEEVARLFEKYDLLAVPVV--DEDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             hcCCcHhHHHHHhcc-------cceeecccCCHHHHHHHHHHhCCeecceE--CCCCceeeeeeHHHHHHHHH
Confidence            334467889999999       89999999999999999999999999999  89999999999999988654

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=2.3e-05  Score=52.36  Aligned_cols=47  Identities=28%  Similarity=0.524  Sum_probs=42.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++.+++++.++.+.|.+++++.+||+  |+ ++++|+++..|+.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~~~   48 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVV--ED-NELVGVISDRDYLKAI   48 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEE--eC-CeEEEEEEHHHHHHHH
Confidence            57889999999999999999999999999  55 8999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.05  E-value=1.6e-05  Score=66.59  Aligned_cols=58  Identities=21%  Similarity=0.369  Sum_probs=53.3

Q ss_pred             cCcHHHHhh-hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|. .       ++.++++++++.++++.|.+++.+.+||+  |++++++|+||.+|+++.+
T Consensus       146 ~~~V~dim~~~-------~~v~v~~~~sl~eal~~m~~~~~~~lpVV--De~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        146 SQPVSEVMTKE-------RLVTVPEGTTLEEALELLHEHRIEKLPVV--DDNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             CCcHHHHcCCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEhHHhhhhh
Confidence            357999998 5       68999999999999999999999999999  7889999999999998875

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.04  E-value=2.4e-05  Score=51.15  Aligned_cols=43  Identities=23%  Similarity=0.302  Sum_probs=39.5

Q ss_pred             EEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        72 ~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++++++++.++++.|.+.+.+.+||+  |+ ++++|+++.+|+++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~--d~-~~~~G~v~~~~l~~   46 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVV--DY-NKFLGAVYLKDIEN   46 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHHhh
Confidence            678999999999999999999999999  56 99999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.02  E-value=1.7e-05  Score=60.92  Aligned_cols=50  Identities=18%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEe
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT  111 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt  111 (139)
                      ..++.++|.+       ++.++.+++++.+|++.|.+++...+||+  |++|+++|+|+
T Consensus       219 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~l~GvI~  268 (268)
T TIGR00393       219 KSEVRDFMTL-------GPKTFKLDALLLEALEFLERRKITSLVVV--DDHNKVLGVLH  268 (268)
T ss_pred             cCcHHHhCCC-------CCeEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCeEEEEEC
Confidence            4679999988       78999999999999999999999999999  67889999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.01  E-value=2.7e-05  Score=51.80  Aligned_cols=48  Identities=29%  Similarity=0.415  Sum_probs=43.4

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++++++++.+|++.|.+.+.+++||+  |++++++|+++..|+.+..
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~--d~~~~~~G~v~~~~l~~~~   49 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVV--DEEGRLVGIVTDRDLRDAS   49 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEE--CCCCcEEEEEEHHHHHHHh
Confidence            57889999999999999999999999999  6779999999999997643

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.98  E-value=2.6e-05  Score=64.02  Aligned_cols=58  Identities=16%  Similarity=0.312  Sum_probs=51.5

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ++.++|++        +.++++++++.++++.|++++.+..+|+  |+.|..+|+||..|++..++.+
T Consensus       256 ~l~~~~~~--------~~~Vpe~~~l~~ll~~m~~~~~~~aiVv--DE~G~~~GiVT~eDileeivge  313 (408)
T TIGR03520       256 DWQSLLRE--------PYFVPENKKLDDLLRDFQEKKNHLAIVV--DEYGGTSGLVTLEDIIEEIVGD  313 (408)
T ss_pred             CHHHHcCC--------CeEeCCCCcHHHHHHHHHhcCceEEEEE--cCCCCEEEEEEHHHHHHHHhCC
Confidence            46666655        7899999999999999999999999999  7889999999999999998644

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.98  E-value=1.6e-05  Score=52.30  Aligned_cols=55  Identities=29%  Similarity=0.387  Sum_probs=42.8

Q ss_pred             ecCCCCHHHHHHHHHHcC-----CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           74 CTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        74 v~~~~tl~~a~~~m~~~~-----~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      +.+++++.++++.|.+++     +..+||+  |++++++|+++.+++++.      . .+.++.++|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv--d~~~~~~G~v~~~~l~~~------~-~~~~v~~~~~~   61 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVV--DEEGRLLGVVSLRDLLLA------D-PDTPVSDIMDT   61 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEE--CCCCCEEEEEEHHHHhcC------C-CcchHHHHhCC
Confidence            568999999999998877     4789999  678999999999998642      1 23456666654

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.93  E-value=4.2e-05  Score=49.77  Aligned_cols=58  Identities=29%  Similarity=0.458  Sum_probs=46.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE  137 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~  137 (139)
                      ++.++++++++.++++.|.+.+.+.+||+  ++ ++++|+++..|++..      . .+.++.++|..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~--d~-~~~~g~v~~~~l~~~------~-~~~~~~~~~~~   60 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVV--DN-GKVVGIVSARDLLGK------D-PDETVEEIMSK   60 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEe--EC-CEEEEEEEHHHhhcc------C-ccccHHHhCCC
Confidence            57889999999999999998888899999  55 899999999998642      1 23456666643

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.84  E-value=4.8e-05  Score=62.77  Aligned_cols=67  Identities=18%  Similarity=0.363  Sum_probs=59.3

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      .+...+|+++|++..     +..+++.+.++.++.+.+.+++++.+||++ ++.+.++|+++.+|++......
T Consensus       202 ~l~~~~v~eiMtPR~-----~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~~~  268 (429)
T COG1253         202 DLDDRTVREIMTPRT-----DIVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALLDG  268 (429)
T ss_pred             ccCCcEeeeEeeecc-----cEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHhcC
Confidence            456789999999965     789999999999999999999999999995 4778999999999999987544

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.80  E-value=3.7e-05  Score=63.90  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=61.5

Q ss_pred             hcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHH-----cCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        48 ~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~-----~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ..++..-+++.+|+.       .++++.++.|+.+++..+++     .....+.|+  |++++++|+++.++++.+    
T Consensus       126 ~l~y~e~taG~~Mt~-------e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVv--D~~~~L~Gvvsl~~Ll~a----  192 (451)
T COG2239         126 LLSYPEDTAGRIMTT-------EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVV--DEKGKLLGVVSLRDLLTA----  192 (451)
T ss_pred             hcCCChhhhhcccee-------eeEEeccCcCHHHHHHHHHHhcccccccceEEEE--CCccceEEEeeHHHHhcC----
Confidence            335567899999999       89999999999999999994     445778899  789999999999998642    


Q ss_pred             CCCCccCccccccccC
Q 032532          123 GRSSKSTKVGDIMTEE  138 (139)
Q Consensus       123 ~~~~~~~~v~~im~~~  138 (139)
                         .++.++.++|.+.
T Consensus       193 ---~~~~~i~~im~~~  205 (451)
T COG2239         193 ---EPDELLKDLMEDD  205 (451)
T ss_pred             ---CcHhHHHHHhccc
Confidence               2467788888654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.78  E-value=0.00011  Score=59.55  Aligned_cols=56  Identities=16%  Similarity=0.315  Sum_probs=50.3

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      .+.+.+..       ...++.+++++.+++..|.+++.. +||+  |++|+++|+||..++++++.
T Consensus       303 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       303 GLQDVLID-------DIYTVDAGTLLRETVRKVLKAGIK-VPVV--DEDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             chhhhhcc-------CCceECCCCcHHHHHHHHHhCCCC-EEEE--CCCCcEEEEEEHHHHHHHHH
Confidence            46677766       678999999999999999999998 9999  78999999999999998874

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.73  E-value=0.00012  Score=48.29  Aligned_cols=48  Identities=15%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~  119 (139)
                      ....+.+++++.++.+.+.+++...+||+  ++   +++++|+|+.+|+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~~~~~~~G~v~~~dl~~~~   53 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVV--DSTEESPRLVGYILRSQLVVAL   53 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceE--cCCCCCCEEEEEEeHHHHHHHH
Confidence            46788999999999999999989999999  56   68999999999997755

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.73  E-value=0.0002  Score=46.66  Aligned_cols=46  Identities=28%  Similarity=0.417  Sum_probs=41.4

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      +..++.+++++.+++..|.+.+.+.+||+  +++++++|+++.+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~g~v~~~~l~~   47 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVV--KKSGELVGIITRKDLLR   47 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEE--cCCCcEEEEEEHHHHHh
Confidence            57888999999999999999899999999  66799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.60  E-value=0.0003  Score=57.73  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=50.8

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG  123 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~  123 (139)
                      .+.+.+.+       ...++.+++++.+++..+.+.... +||+  |++|+++|+||..++++++...|
T Consensus       338 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~g~~~~~~~~~~~~~~~  396 (400)
T PRK10070        338 GLDAALID-------APLAVDAQTPLSELLSHVGQAPCA-VPVV--DEDQQYVGIISKGMLLRALDREG  396 (400)
T ss_pred             chhhhhcc-------CCceeCCCCCHHHHHHHHHhCCCc-EEEE--CCCCcEEEEEEHHHHHHHHHhcC
Confidence            46666666       688999999999999999997766 9999  78999999999999999886544

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.58  E-value=0.00021  Score=59.01  Aligned_cols=55  Identities=16%  Similarity=0.343  Sum_probs=45.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|.+       ++.++++++++.++++.|.+++  . |||  +++++++|+||.+|+++++
T Consensus       399 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~~~~~~--~-~vV--~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       399 DDAVSKVMSK-------KFIQIGEGEKLSDLSKFLEKNS--S-AIV--TEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCCHHHhcCC-------CCeEECCcCcHHHHHHHHHHCC--e-eEE--EECCEEEEEEEHHHHHHhh
Confidence            3579999987       7889999999999999998764  3 445  3568999999999998764

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.38  E-value=0.001  Score=54.37  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=48.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG  123 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~  123 (139)
                      .+++|.++.|+.++++.|..++++.+.||  |++|.++|+||..|++..+....
T Consensus       311 ~vvtc~~~ssL~~vi~~lv~~~vHRl~VV--d~~~~l~GvvSLsDil~~l~~~p  362 (381)
T KOG1764|consen  311 GVVTCRPTSTLAEVIDKLVAHRVHRLWVV--DEDGVLVGVISLSDILSYLVLTP  362 (381)
T ss_pred             ccEEEeecchHHHHHHHHHhcCceEEEEE--cCCCcEEEEeeHHHHHHHHHhCc
Confidence            57999999999999999999999999999  78899999999999999987653

>PRK11573 hypothetical protein; Provisional

Probab=97.31  E-value=0.00076  Score=55.56  Aligned_cols=51  Identities=16%  Similarity=0.268  Sum_probs=46.8

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ++.+++++.++.++++.|++++.+-..|+  |+-|...|+||..|++..++.+
T Consensus       263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVv--DEyG~~~GiVTleDilEeivGe  313 (413)
T PRK11573        263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVV--DEYGDIQGLVTVEDILEEIVGD  313 (413)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEE--ecCCCeEEEeeHHHHHHHHhCC
Confidence            48899999999999999999999888899  7889999999999999998754

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.00046  Score=52.92  Aligned_cols=62  Identities=15%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..+|+|+|.+..     ...+++.+.++.+.+..+.+...+.+||+. ++...+.||+-.+||++.+.
T Consensus        66 dl~vrDiMIPRS-----QM~~l~~~~~l~~~l~~iiesaHSRfPVi~-edkD~v~GIL~AKDLL~~~~  127 (293)
T COG4535          66 DLRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVIS-EDKDHVEGILLAKDLLPFMR  127 (293)
T ss_pred             HhhHhhhcccHH-----HheeccccCCHHHHHHHHHHhccccCCccc-CCchhhhhhhhHHHHHHHhc
Confidence            578999998854     578899999999999999999999999995 35678999999999999763

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=96.92  E-value=0.0028  Score=52.37  Aligned_cols=50  Identities=20%  Similarity=0.315  Sum_probs=46.5

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ++..+++..++.++++.|++.+.+-..|+  |+-|...|+||..|++..++.
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVv--DEyG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVV--DEYGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEE--EcCCCeEEEeEHHHHHHHHhC
Confidence            68999999999999999999998888999  788999999999999999865

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.0015  Score=53.61  Aligned_cols=58  Identities=17%  Similarity=0.289  Sum_probs=53.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ....+.|+|++       ++++.+.+-++.++-+++.+++...+|||  |++++++-++++.||.+.
T Consensus       169 ~~~~~~~vmt~-------~~~~~~~gi~l~~~neiL~~~kkGkl~iv--~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  169 NSLLVSDVMTK-------NPVTGAQGITLKEANEILKKIKKGKLPVV--DDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             ccchhhhhccc-------ccccccccccHHHHHHHHHhhhcCCccee--ccCCceeeeeehhhhhhh
Confidence            45679999999       78889999999999999999999999999  789999999999999764

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.0012  Score=56.73  Aligned_cols=47  Identities=26%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      .|.++.+++++..+..+++.-|++++.|+  +...+++|++|++|+.+.
T Consensus       699 sPytV~~~mSl~k~~~lFR~lGLRhLlVv--~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  699 SPYTVPETMSLAKAFILFRQLGLRHLLVV--PKTNRVVGILTRKDLARY  745 (762)
T ss_pred             CCcccCcccchHHHHHHHHHhcceeEEEe--cCCCceeEEEehhhhhhH
Confidence            79999999999999999999999999999  677788999999999754

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.86  E-value=0.0013  Score=45.61  Aligned_cols=30  Identities=37%  Similarity=0.394  Sum_probs=28.6

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEe
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVK   99 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~   99 (139)
                      ++.++.+++++.+|++.|.+++++++||++
T Consensus        87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd  116 (133)
T cd04592          87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVK  116 (133)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence            688999999999999999999999999995

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=96.80  E-value=0.0025  Score=52.10  Aligned_cols=50  Identities=24%  Similarity=0.251  Sum_probs=45.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      +...+..++++.+|++.|.+++++++||+  +..|..+|..+..|+......
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV--~~~g~~v~~~s~~Dv~~l~~~  287 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVV--DENGKKVGNYSRFDVIHLARE  287 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEE--cCCCceecceehhhhhhhhhc
Confidence            57889999999999999999999999999  788888999999999776543

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.0011  Score=53.82  Aligned_cols=67  Identities=19%  Similarity=0.336  Sum_probs=57.8

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      .+..++|.|+|.+..     +...++.+++..+.++.+.+..+..+|+.. |+-+.++|++..+|+++++...
T Consensus       196 DLe~~tV~DIMvpR~-----~i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnIiGvlh~r~llr~l~e~  262 (423)
T COG4536         196 DLENLTVSDIMVPRN-----EIIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNIIGVLHVRDLLRLLNEK  262 (423)
T ss_pred             ccccceeeeeecccc-----ceeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHhhhhhhHHHHHHHhhcc
Confidence            446799999999865     688899999999999999999999999996 4445699999999999987543

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=96.46  E-value=0.0027  Score=52.12  Aligned_cols=63  Identities=25%  Similarity=0.380  Sum_probs=50.8

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecC-CCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d-~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      +|.++.|+.++.++++.-..+++..+||.+.+ -..+|+|+||-+|+ ..+  +  + ...++.++|++.
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~--~--~-~~~~~~~vmt~~  180 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL--E--D-NSLLVSDVMTKN  180 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh--h--c-ccchhhhhcccc
Confidence            68899999999999999999999999999311 24689999999998 444  2  1 357788888764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.37  E-value=0.012  Score=46.03  Aligned_cols=80  Identities=16%  Similarity=0.095  Sum_probs=54.3

Q ss_pred             cchhhhhhcccchhhhhhcCCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEE
Q 032532           31 RPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII  110 (139)
Q Consensus        31 ~~d~~~~~~~~~~~~~~~~~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGiv  110 (139)
                      ..||+..|++...+..+  .+...++.+.|.+....   +--.+.....-.+++..+...+...+||+  |++|+++|.+
T Consensus       228 an~FV~~f~g~~~~~~~--~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ls~~~~~~~~~~~Vv--d~~g~~~G~v  300 (309)
T COG1125         228 ANDFVEDFFGESERGLR--LLSLVSVADAVRRGEPA---DGEPLLEGFVDRDALSDFLARGRSVLPVV--DEDGRPLGTV  300 (309)
T ss_pred             cHHHHHHHhcccccccc--ccchhhHHHhhcccccc---cCCccccchhhHHHHHHHHhcCCceeEEE--CCCCcEeeEE
Confidence            44666678776433221  22346788887763211   12233445556678888888999999999  8999999999


Q ss_pred             eHHHHHH
Q 032532          111 TERDYLR  117 (139)
Q Consensus       111 t~~dll~  117 (139)
                      |..+++.
T Consensus       301 t~~~l~~  307 (309)
T COG1125         301 TRADLLD  307 (309)
T ss_pred             EHHHHhh
Confidence            9999865

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=96.17  E-value=0.03  Score=45.65  Aligned_cols=51  Identities=18%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      .|.++++++++.+-+..|.+++-+--.||  |+=|.+.|+||..|++..+...
T Consensus       276 epyFVPe~Tpl~~QL~~F~~~k~hialVV--DEYG~i~GLVTLEDIlEEIVGd  326 (423)
T COG4536         276 EPYFVPEGTPLSDQLVAFQRNKKHIALVV--DEYGDIQGLVTLEDILEEIVGD  326 (423)
T ss_pred             CCeecCCCCcHHHHHHHHHHhcceEEEEE--eccCcEEeeeeHHHHHHHHhcc
Confidence            48899999999999999999988888899  7899999999999999988643

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.94  E-value=0.023  Score=46.46  Aligned_cols=47  Identities=13%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      +..++++++++.+++..+.+.+. -++|+  |+ |+++|+|+..+++.++.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGG-AILLV--EN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCC-CeEEe--eC-CeEEEEEeHHHHHHHHh
Confidence            57889999999999998888765 47788  44 99999999999998763

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.93  E-value=0.056  Score=46.66  Aligned_cols=57  Identities=23%  Similarity=0.304  Sum_probs=50.7

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ....+++|..       .|.++....+..-.++++++-++.++.|.   .+|++.|+||.+|+++..
T Consensus       638 ~~~lk~il~~-------tp~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  638 RLDLKDILDM-------TPFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CcCceeeccC-------CcccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHhh
Confidence            3567788877       89999999999999999999999999996   899999999999998753

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.83  E-value=0.027  Score=49.60  Aligned_cols=62  Identities=13%  Similarity=0.220  Sum_probs=54.0

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...+.|.++|.+       ++.++..++|..|..+.+....+..+|+|++-++.-++|.|.++.|...+
T Consensus       585 ~h~v~VE~iMV~-------dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  585 VHTVKVEHIMVT-------DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             eeEEEeeeeccc-------cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            346889999999       89999999999999999998779999999644567899999999987655

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=94.18  E-value=0.25  Score=38.20  Aligned_cols=58  Identities=21%  Similarity=0.310  Sum_probs=50.2

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..+.++..+        .+.++++-.+.-.++-++.+...-..|+  |+=|-+-|.||..|++..+..
T Consensus       133 F~i~~lLRP--------av~VPESKrvd~lLkeFR~~RnHMAIVi--DEfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         133 FDIKELLRP--------AVVVPESKRVDRLLKEFRSQRNHMAIVI--DEFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             ccHHHhccc--------ceecccchhHHHHHHHHHhhcCceEEEE--eccCCeeeeEEHHHHHHHHhc
Confidence            457777665        8899999999999999999888888899  788999999999999988764

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.15  E-value=0.028  Score=48.59  Aligned_cols=61  Identities=15%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC---CceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~---~~lvGivt~~dll~~~  119 (139)
                      ...+++|+|+.       +.++++.-+.+...++.++....+.+||+++.+.   +++.|+|-+..++..+
T Consensus       580 r~L~a~ev~~~-------pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL  643 (762)
T KOG0474|consen  580 RNLTAGEVMSK-------PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL  643 (762)
T ss_pred             hhhhHhhhccC-------CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence            35789999999       8999999999999999999999999999953222   5899999998886543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=93.52  E-value=0.28  Score=40.43  Aligned_cols=60  Identities=12%  Similarity=0.085  Sum_probs=46.5

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      .++.++|.....    ......++.+..+++..|...+.+.+.|+  |++++++|+++.+++.+..
T Consensus       274 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~  333 (400)
T PRK10070        274 FSAKDIARRTPN----GLIRKTPGFGPRSALKLLQDEDREYGYVI--ERGNKFVGAVSIDSLKTAL  333 (400)
T ss_pred             cchhhhhhcCcc----cccccCCCCCHHHHHHHHHhcCCceEEEE--cCCCcEEEEEeHHHHHhhh
Confidence            467777754110    11234577889999999999999999999  7899999999999997543

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.09  E-value=0.27  Score=39.72  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=40.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++..+.+++++.+.+....+.+ ..++|+  |++++++|++++..++.++.
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVv--de~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAP-CPVAVV--DEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccCccchHHHHHHHHhcCC-CceeEE--cCCCcEEEEecHHHHHHHHh
Confidence            5678888998888888777665 468888  79999999999999998874

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=92.02  E-value=0.94  Score=36.83  Aligned_cols=48  Identities=21%  Similarity=0.233  Sum_probs=41.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ......++.+..++++.|...+.+.+.|+  |+++++.|.++..++.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~  298 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVV--DRQNKLVGVVDVESIKQAR  298 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEE--cCCCCEEEEEeHHHHHHHh
Confidence            34556778899999999999999999999  7889999999999987644

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.75  E-value=0.74  Score=40.01  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=42.3

Q ss_pred             cEEec-CCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           71 WLWCT-TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        71 ~~~v~-~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++. .++++.+....|.+..++.+||+-+++..+++|+|.++|+..++.
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~  608 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAIL  608 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHh
Confidence            44554 449999999999999999999997667789999999999988775

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=88.09  E-value=0.34  Score=28.70  Aligned_cols=35  Identities=9%  Similarity=0.190  Sum_probs=32.2

Q ss_pred             hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032532            2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS   36 (139)
Q Consensus         2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~   36 (139)
                      +.|++.++.++.++-..+++.++++..+++.|+..
T Consensus         3 ~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~   37 (57)
T PF08220_consen    3 QQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNK   37 (57)
T ss_pred             HHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHH
Confidence            57999999999999999999999999999988843

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=82.80  E-value=2.4  Score=37.82  Aligned_cols=48  Identities=8%  Similarity=0.140  Sum_probs=44.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      .|..+-+.+++.++-.++.--|+++.-|.   +-|+++|+|..++|.+++.
T Consensus       811 aPfQLve~TSL~K~HtLFSLLgL~~AYVT---~~GrLvGVValkELRkAie  858 (931)
T KOG0476|consen  811 APFQLVEGTSLYKVHTLFSLLGLNHAYVT---SCGRLVGVVALKELRKAIE  858 (931)
T ss_pred             CceeeeccchHHHHHHHHHHhccchhhhc---ccCcEEEEEEHHHHHHHHH
Confidence            57888999999999999999999999998   6899999999999988874

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=81.36  E-value=0.95  Score=26.07  Aligned_cols=33  Identities=9%  Similarity=0.172  Sum_probs=26.9

Q ss_pred             hhHHHHH-hhcCCCchHHHHhhhCCccccccchh
Q 032532            2 QGAIQSF-LSHGNIVKSAVLQRIRLVNPMLRPVV   34 (139)
Q Consensus         2 ~~~~~~~-~~~~~i~~~~v~~~~~~~~~~~~~d~   34 (139)
                      +.|++.+ ..+++++...+++.++++..+++.++
T Consensus         3 ~~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i   36 (55)
T PF08279_consen    3 KQILKLLLESKEPITAKELAEELGVSRRTIRRDI   36 (55)
T ss_dssp             HHHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHH
T ss_pred             HHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHH
Confidence            4688888 66667999999999999998887666

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		3e-15
2rc3_A	135	Crystal Structure Of Cbs Domain, Ne2398 Length = 13		4e-08
3ghd_A	70	Crystal Structure Of A Cystathionine Beta-Synthase		9e-04

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 63/91 (69%), Gaps = 6/91 (6%)
Query: 50  GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
           G  STT++ ILKAK     G  ++  T +D VYDA+K M +  +GAL+VV   +   +AG
Sbjct: 3   GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139
           I+TERDY RK+++Q RSSK+T+V +IMT +V
Sbjct: 58  IVTERDYARKVVLQERSSKATRVEEIMTAKV 88

>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398 Length = 135

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 55  TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
           T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K    + + GI+TERD
Sbjct: 7   TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERD 59
Query: 115 YLRKIIVQGRSSKSTKVGDIMTEEV 139
           + RK  +  +  K T+V +IMT +V
Sbjct: 60  FSRKSYLLDKPVKDTQVKEIMTRQV 84

>pdb|3GHD|A Chain A, Crystal Structure Of A Cystathionine Beta-Synthase Domain Protein Fused To A Zn-Ribbon-Like Domain Length = 70

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 78  DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTE 137
           DTV    K ++++  G+ VV    E   + G++TERD L K++ +G++ K  KV +I T+
Sbjct: 9   DTVDRVAKILSRNKAGSAVVX---EGDEILGVVTERDILDKVVAKGKNPKEVKVEEIXTK 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	8e-25
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-04
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-24
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-05
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-23
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	1e-05
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-20
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	7e-06
3fio_A	70	A cystathionine beta-synthase domain protein fused	6e-20
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-18
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-07
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	8e-18
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	6e-06
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-17
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-05
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-15
1pbj_A	125	Hypothetical protein; structural genomics, domain,	5e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	4e-15
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-07
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	8e-15
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-06
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	6e-13
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	5e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	3e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	6e-10
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	7e-06
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-10
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-05
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	9e-10
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	9e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-09
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	6e-09
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-08
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	8e-07
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	7e-09
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	1e-08
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-08
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	7e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-08
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-08
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-08
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-08
3ddj_A	296	CBS domain-containing protein; structural genomics	9e-08
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-07
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	5e-08
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-06
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-07
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	7e-04
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-07
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-07
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-04
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	3e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	9e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	9e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-04
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-06
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-04
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	1e-06
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-06
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-04
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	3e-06
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	7e-05
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	7e-05
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	9e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	1e-04
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	6e-04

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 92.0 bits (229), Expect = 8e-25
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 35  SSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA 94
                  S          +T + D+L  KG+      +    D ++ +A  ++  H +GA
Sbjct: 5   HHHHHHSSGRENLYFQGMATFVKDLLDRKGRDV----VTVGPDVSIGEAAGTLHAHKIGA 60

Query: 95  LVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139
           +VV        V GI TERD ++ +  QG +S    V   MT+ V
Sbjct: 61  VVVT--DADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTKNV 103

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           C  + T    ++ MT      + V + G    +AGII+  D ++  I
Sbjct: 106 CQHNSTTDQLMEIMTGGRFRHVPVEENGR---LAGIISIGDVVKARI 149

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 91.6 bits (228), Expect = 1e-24
 Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 4/90 (4%)

Query: 50  GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           G  STT++ ILKAK   +  +    T +D VYDA+K M +  +GAL+VV   +   +AGI
Sbjct: 3   GSMSTTVAQILKAK-PDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD---IAGI 58

Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139
           +TERDY RK+++Q RSSK+T+V +IMT +V
Sbjct: 59  VTERDYARKVVLQERSSKATRVEEIMTAKV 88

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +     +  + +  MT+H +  L V+  G+   + G+I+  D ++ +I
Sbjct: 90  YVEPSQSTDECMALMTEHRMRHLPVLDGGK---LIGLISIGDLVKSVI 134

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 87.7 bits (218), Expect = 2e-23
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 7/86 (8%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K  +   + GI+TER
Sbjct: 6   KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEK---LVGILTER 58

Query: 114 DYLRKIIVQGRSSKSTKVGDIMTEEV 139
           D+ RK  +  +  K T+V +IMT +V
Sbjct: 59  DFSRKSYLLDKPVKDTQVKEIMTRQV 84

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
            +   ++T  D +  +T+  V  L V+  G+   V G+++  D ++  I
Sbjct: 85  AYVDLNNTNEDCMALITEMRVRHLPVLDDGK---VIGLLSIGDLVKDAI 130

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 79.1 bits (196), Expect = 3e-20
 Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
                +T+  A + M +H++GAL +    ++  + G++T+RD + K +  G    +   G
Sbjct: 20  CVGEHETLTAAAQYMREHDIGALPICGDDDR--LHGMLTDRDIVIKGLAAGLDPNTATAG 77

Query: 133 DIMTEEV 139
           ++  + +
Sbjct: 78  ELARDSI 84

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +   + ++ + +  M +H V  + V+       + GI+TE D  R + 
Sbjct: 86  YVDANASIQEMLNVMEEHQVRRVPVISEHR---LVGIVTEADIARHLP 130

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 75.4 bits (186), Expect = 2e-18
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 50  GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           G  +   S++LK          +      T+ +    + ++ VG  V+      K    +
Sbjct: 1   GAMAIRTSELLKRPP-------VSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV 53

Query: 110 ITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139
           ++ERD LR +    R         I    +
Sbjct: 54  VSERDILRAVA--QRLDLDGPAMPIANSPI 81

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 29/121 (23%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST---------------TISDILKAKGKGADGS 70
           + RP VS     ++      + ++                    +  DIL+A  +  D  
Sbjct: 11  LKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD 70

Query: 71  W---------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV 121
                     +     D V+ A + M +HN+  +VVV   +   + G+++ RD   +  +
Sbjct: 71  GPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFERAI 128

Query: 122 Q 122
            
Sbjct: 129 L 129

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 73.4 bits (181), Expect = 8e-18
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV 131
           L      +V +A + M + +VG+LVV+   +  +V G  T+ D +R++IV G       V
Sbjct: 18  LGVKPSTSVQEASRLMMEFDVGSLVVIN--DDGNVVGFFTKSDIIRRVIVPGLPY-DIPV 74

Query: 132 GDIMTEEV 139
             IMT  +
Sbjct: 75  ERIMTRNL 82

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ 122
               +  + + ++ M +H +  +++ + G+   + GI T  D L     +
Sbjct: 84  TANVNTPLGEVLRKMAEHRIKHILIEEEGK---IVGIFTLSDLLEASRRR 130

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 72.8 bits (179), Expect = 3e-17
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + TV+DAVK M ++++  LVV    +  +  G+++ER  +++ I + +      +  
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKD--DNGNDVGLLSERSIIKRFIPRNKKPDEVPIRL 79

Query: 134 IMTEEV 139
           +M + +
Sbjct: 80  VMRKPI 85

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
              +D  V D    ++++ +    VV   +   V GI+T  D  R +
Sbjct: 87  KVKSDYDVKDVAAYLSENGLERCAVVD--DPGRVVGIVTLTDLSRYL 131

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 67.2 bits (165), Expect = 1e-15
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                ++ D +++  ++  G+ VVVK G      GI+T  D + + I +G      KV +
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV---RVGIVTTWD-VLEAIAEGDDLAEVKVWE 69

Query: 134 IMTEEV 139
           +M  ++
Sbjct: 70  VMERDL 75

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 29/118 (24%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST------------TISDILKAKGKGADGSWL- 72
           M+  V +     S+        E+   S+            T  D+L+A  +G D + + 
Sbjct: 7   MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVK 66

Query: 73  ----------WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
                       +   T+ +A + M ++ V  L+V +  E   + G+I+  D LR  +
Sbjct: 67  VWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE---IIGVISATDILRAKM 121

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 66.1 bits (162), Expect = 4e-15
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D  + D  K MT+ N+G+++VV   +     GIITERD + K I +G+S + TK  +
Sbjct: 17  VTKDAKLNDIAKVMTEKNIGSVIVVDGNK---PVGIITERD-IVKAIGKGKSLE-TKAEE 71

Query: 134 IMTEEV 139
            MT  +
Sbjct: 72  FMTASL 77

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 27/117 (23%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST------------TISDILKAKGKGADGSW-- 71
           M   V+S ++   ++     M E    S             T  DI+KA GKG       
Sbjct: 10  MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKA 69

Query: 72  --------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
                   +    D  +  A+  M Q N+  L VV   ++ ++ GII+ RD  R I 
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVD--DKGNLKGIISIRDITRAID 124

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 66.2 bits (162), Expect = 8e-15
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + +VYDA+ +M   +VG L VV       + G+++ +D L +  +  +   S  V  
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKD-LLRASIGQQELTSVPVHI 85

Query: 134 IMTEE 138
           IMT  
Sbjct: 86  IMTRM 90

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 29/121 (23%)

Query: 29  MLRPVVSSRFESVSSAR--MEEHGFEST-------------TISDILKAKGKGADGSWL- 72
              PVV     SV  A   M      +              +  D+L+A     + + + 
Sbjct: 23  QSIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVP 82

Query: 73  ------------WCTTDDTVYDAVKSMTQHNVGAL-VVVKPGEQKSVAGIITERDYLRKI 119
                        C  +D V D  K + +  + AL V+    +   V G +T+ +  + +
Sbjct: 83  VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142

Query: 120 I 120
           +
Sbjct: 143 V 143

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 60.7 bits (148), Expect = 6e-13
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
               + V +A + M ++ + +L V+   ++  V GI+T  D +   +++ + +  T +GD
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVID--DENKVIGIVTTTD-IGYNLIRDKYTLETTIGD 77

Query: 134 IMTEEV 139
           +MT++V
Sbjct: 78  VMTKDV 83

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 53.5 bits (129), Expect = 5e-10
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR-------KIIVQGRSS 126
                T+ DA   M   ++  + +V     K + GI+++RD L        +       +
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVD--ANKKLLGIVSQRDLLAAQESSLQRSAQGDSLA 75

Query: 127 KSTKVGDIMTEEV 139
             T + ++M  +V
Sbjct: 76  FETPLFEVMHTDV 88

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
              + ++   M +H +G L VV       + GIIT+ D++   I      + ++  ++  
Sbjct: 94  QAGLKESAIYMQKHKIGCLPVVAKDV---LVGIITDSDFVTIAINLLELQEESEPDELDE 150

Query: 137 EE 138
           E+
Sbjct: 151 EQ 152

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C     V D ++ +TQ  V ++ ++   E   +  +    D L  I     +  S  VG+
Sbjct: 24  CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGE 81

Query: 134 IMTE 137
            +  
Sbjct: 82  ALMR 85

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
           S ++ + L  +    +G    CT +D +   + ++ +  V    VV   +   + G++T 
Sbjct: 76  SLSVGEALMRRSDDFEGV-YTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTL 132

Query: 113 RDYLRKIIV 121
            D L+ I++
Sbjct: 133 SDILKYILL 141

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 53.6 bits (129), Expect = 6e-10
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 28/92 (30%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS----- 128
                +V DA++ + +  V  L V+   +  ++ G++++ D L    + GRS        
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLALDSISGRSQNDTNLFP 76

Query: 129 ---------------------TKVGDIMTEEV 139
                                  VGD+MT   
Sbjct: 77  DVDSTWKTFNELQKLISKTYGKVVGDLMTPSP 108

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 8   FLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGA 67
            +S  +++    +      +  L P V S +++ +  +          + D++       
Sbjct: 52  VVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSP--- 108

Query: 68  DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK 127
               L       + DA + + +     L VV       + GI+T  + +R  +   R++ 
Sbjct: 109 ----LVVRDSTNLEDAARLLLETKFRRLPVVD--ADGKLIGILTRGNVVRAALQIKRNAD 162

Query: 128 STKVGDIMTEEV 139
           S          +
Sbjct: 163 SISGRSQNDTNL 174

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 52.1 bits (126), Expect = 9e-10
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           + ++ +A K + +HN+  L +V   E   + GIIT  D  + +     +     + +IMT
Sbjct: 17  NISIMEAAKILIKHNINHLPIVD--EHGKLVGIITSWDIAKAL-----AQNKKTIEEIMT 69

Query: 137 EEV 139
             V
Sbjct: 70  RNV 72

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           D+ V      M+++N+  + VV   + + V GI+T  D  R  
Sbjct: 78  DEPVDHVAIKMSKYNISGVPVVD--DYRRVVGIVTSEDISRLF 118

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 16/80 (20%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------- 125
              D  + + V  + +  V   V V       + G+I     L+                
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELI 86

Query: 126 ------SKSTKVGDIMTEEV 139
                   +    +IM + V
Sbjct: 87  RSSMKRLIAKNASEIMLDPV 106

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
           D  + +A+K M  +N+  + VV   E+  + G +   + L  +
Sbjct: 111 DTPLEEALKLMIDNNIQEMPVVD--EKGEIVGDLNSLEILLAL 151

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 39/147 (26%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST-------------TISDILKAKGKGADGSW- 71
           M   V++      +  A                         T  D+++A     D +  
Sbjct: 90  MEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEV 149

Query: 72  ---------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI--- 119
                    +  T  + + D  ++M ++    L VV  G    + GIIT  D+++ +   
Sbjct: 150 IDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGR---LVGIITSTDFIKLLGSD 206

Query: 120 -------IVQGRSSKSTKVGDIMTEEV 139
                      R   + ++ +IM  +V
Sbjct: 207 WAFNHMQTGNVREITNVRMEEIMKRDV 233

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS-------- 125
                T+  A+ +M ++    L VV  G  K V GIIT  D +  +    +         
Sbjct: 17  VYPTTTIRKALMTMNENKYRRLPVVNAGNNK-VVGIITSMDIVDFMGGGSKYNLIREKHE 75

Query: 126 -----SKSTKVGDIMTEEV 139
                + +  V +IM E V
Sbjct: 76  RNFLAAINEPVREIMEENV 94

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
               D +    + M  +++GAL VV   E   + GIITE+D L+  
Sbjct: 236 AKEGDKLKKIAEIMVTNDIGALPVVD--ENLRIKGIITEKDVLKYF 279

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 46  MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
           ME   F     E       L           +   +D TV +A+  M +H V  L VV  
Sbjct: 365 MEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD- 423

Query: 101 GEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV 139
            +  SV G++ +   + +I+      +S      + + V
Sbjct: 424 QDDGSVLGVVGQETLITQIV-SMNRQQSDPAIKALNKRV 461

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  + +    A+ V+       + G+I+    L  I+   R      +  
Sbjct: 30  VQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLISTAMILDGILGLERIEFERLEEM 87

Query: 130 KVGDIMTEEV 139
           KV  +M +++
Sbjct: 88  KVEQVMKQDI 97

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  +T+    A+ V+       + G+I+    +  I+   R      ++ 
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDAILGLERIEFERLETM 83

Query: 130 KVGDIMTEEV 139
           KV ++M   +
Sbjct: 84  KVEEVMNRNI 93

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS----KST 129
               + +  A+  +T+    A+ V+ P  +  + G+I     +  I    R         
Sbjct: 29  VQVGNNLEHALLVLTKTGYTAIPVLDPSYR--LHGLIGTNMIMNSIFGLERIEFEKLDQI 86

Query: 130 KVGDIMTEEV 139
            V ++M  ++
Sbjct: 87  TVEEVMLTDI 96

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
               + A+  M   N G+L VV   ++    GI+TER++L          +   V   M+
Sbjct: 109 TSDEFTAINIMVTRNFGSLPVVDINDK--PVGIVTEREFLLLYK---DLDEIFPVKVFMS 163

Query: 137 EEV 139
            +V
Sbjct: 164 TKV 166

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 48.2 bits (115), Expect = 9e-08
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK------ 127
            + +D +  A K + +  +G ++V      + + G++T RD L  +    + S       
Sbjct: 33  LSKEDRLGSAFKKINEGGIGRIIVAN----EKIEGLLTTRDLLSTVESYCKDSCSQGDLY 88

Query: 128 ---STKVGDIMTEEV 139
              +T + D MT   
Sbjct: 89  HISTTPIIDYMTPNP 103

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI-----IVQGRSSKS 128
              +  +  AVK M +     L V+   +   V GI+T  + ++++      +       
Sbjct: 169 IYKEVRLDQAVKLMLRRGFRRLPVID--DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYG 226

Query: 129 TKVGDIMTEEV 139
             V D+M   +
Sbjct: 227 KVVKDVMVTNL 237

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 35/125 (28%)

Query: 29  MLRPVVS-SRFESVSSAR--MEEHGFES-------------TTISDILKAKGKGADGS-- 70
           M   V +  +   +  A   M   GF                T+ + +K   K  D    
Sbjct: 162 MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDP 221

Query: 71  ---------------WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY 115
                           +      +V  A   M    +G+L+++   +  ++ GIITERD 
Sbjct: 222 DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDL 279

Query: 116 LRKII 120
           L  + 
Sbjct: 280 LIALH 284

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 47.9 bits (115), Expect = 5e-08
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                T+ DA+  +T+ N+G   +    +  ++ GI T+ D LR++   G   +   + D
Sbjct: 43  VGLQATLRDALLEITRKNLGMTAICD--DDMNIIGIFTDGD-LRRVFDTGVDMRDASIAD 99

Query: 134 IMT 136
           +MT
Sbjct: 100 VMT 102

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
           +DT+  A K M +++   +VVV    +    GI+T  D +R+   +    K  ++     
Sbjct: 76  NDTLKKAAKLMLEYDYRRVVVVD--SKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQ 133

Query: 137 EEV 139
             V
Sbjct: 134 RYV 136

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMT 136
             T   A++   ++ V +  VV   ++  + GII+ +  L             ++  ++ 
Sbjct: 17  PATRNYALELFKKYKVRSFPVVN--KEGKLVGIISVKRILVNPD-------EEQLAMLVK 67

Query: 137 EEV 139
            +V
Sbjct: 68  RDV 70

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI 134
           T   +  DA + +         V+         G++     L     +G  +   K+G+ 
Sbjct: 19  TLGGSTADAARRLAASGCACAPVLDGER---YLGMVHLSRLLEG--RKGWPTVKEKLGEE 73

Query: 135 MTEEV 139
           + E V
Sbjct: 74  LLETV 78

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
            + ++D + S+       + +    E     G+++ +  L  +
Sbjct: 84  GEQLFDNLISVAAAKCSVVPLA--DEDGRYEGVVSRKRILGFL 124

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 51  FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
            +S    D++    K      +   T   V  A  ++  + V A  +    +Q    G++
Sbjct: 32  MKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS-FVGML 85

Query: 111 TERDYLRKIIVQGRSSKSTKVGDIM 135
           T  D++  I+ +   S   ++ ++ 
Sbjct: 86  TITDFIN-ILHRYYKSALVQIYELE 109

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSK 127
           C   +T+   +  + +  V  LVVV   E   V GI++  D L+ +++ G   K
Sbjct: 278 CYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVLTGGEKK 329

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
             T   VY A+    QH V AL VV   E+  V  I ++ D +     +  ++    V  
Sbjct: 206 VRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTK 263

Query: 134 IMTEE 138
            +   
Sbjct: 264 ALQHR 268

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 43  SARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE 102
           SA ++ +  E   I    +   + +    +  + + +++DAV S+ ++ +  L V+ P  
Sbjct: 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 159

Query: 103 QKSVAGIITERDYLRKIIVQGRSSKST--------KVGDIMTEEV 139
                 I+T +  L+ + +                ++       +
Sbjct: 160 GN-TLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANI 203

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 47.1 bits (113), Expect = 3e-07
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T +  VYDA   M ++ +  + VV   +++ + GIIT RD +R I        S K+ D
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD-MRFI-----QDYSIKISD 179

Query: 134 IMTEE 138
           +MT+E
Sbjct: 180 VMTKE 184

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
           C     V D ++ +TQ  V ++ ++   E   +  +    D L  I     +  S  VG+
Sbjct: 203 CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGE 260

Query: 134 IMTEE 138
            +   
Sbjct: 261 ALMRR 265

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
           S ++ + L  +    +G    CT +D +   + ++ +  V    VV   +   + G++T 
Sbjct: 255 SLSVGEALMRRSDDFEGV-YTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTL 311

Query: 113 RDYLRKIIV 121
            D L+ I++
Sbjct: 312 SDILKYILL 320

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 28  PMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM 87
           P          E   +         S T  D+L    +      +   T   V  ++  +
Sbjct: 4   PTQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYR-----LIVLDTSLLVKKSLNVL 58

Query: 88  TQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
            Q+++ +  +      +  AG++T  D++  I
Sbjct: 59  LQNSIVSAPLWDSKTSR-FAGLLTTTDFINVI 89

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
                TV + +  M Q+     +V     +    G++ + D L            + V +
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKD--REGHFRGVVNKEDLLDL-------DLDSSVFN 76

Query: 134 IMTEEV 139
            ++   
Sbjct: 77  KVSLPD 82

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
           +D +  A+    +H    L VV   E+  + G ++  D+L  +I
Sbjct: 88  EDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALI 129

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T +  V +A + M ++ +  + +V+    + + GIIT RD +R I     S  +  + +
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRD-MRFI-----SDYNAPISE 156

Query: 134 IMTEE 138
            MT E
Sbjct: 157 HMTSE 161

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            + +  VYD +K + + N+ A+ +V    + ++  +    D +  I     S+    VG+
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVN--SEGTLLNVYESVDVMHLIQDGDYSNLDLSVGE 255

Query: 134 IMTEE 138
            + + 
Sbjct: 256 ALLKR 260

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 55  TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERD 114
           ++ + L  +    DG    C   D +     ++    V  L VV   E   + GI++  D
Sbjct: 252 SVGEALLKRPANFDGVHT-CRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLAD 308

Query: 115 YLRKII 120
            L  II
Sbjct: 309 ILNYII 314

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 11/66 (16%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              D+TV  A+  M +H +  L VV+  +   V GIIT++D          + +   V +
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDEK---VVGIITKKDI--------AAREGKLVKE 154

Query: 134 IMTEEV 139
           +MT+EV
Sbjct: 155 LMTKEV 160

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 74  CTTDDTVYDAVKSMTQHNVGAL-VVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG 132
              D T  D +    +     + V         + G++T+RD          +   TKV 
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRD-YPI----DLTQTETKVS 164

Query: 133 DIMT 136
           D+MT
Sbjct: 165 DMMT 168

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
            T D TV +A+  M ++ +G L VV   E+  + G++T RD +R        + S K+ D
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRD-VRFE-----KNLSKKIKD 159

Query: 134 IMT 136
           +MT
Sbjct: 160 LMT 162

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD 133
              + T+ D ++    H      VV   E   + GIIT RD +R +     +  +  V  
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVT--ENNELVGIITGRD-VRFV-----TDLTKSVAA 153

Query: 134 IMT 136
           +MT
Sbjct: 154 VMT 156

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS-VAGIITERDYLRKIIVQGRSSKSTKVG 132
            +   TV D +++  +H    + + + G   S + GI+T RD +           +T + 
Sbjct: 121 LSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRD-ID---FLAEKDHTTLLS 176

Query: 133 DIMT 136
           ++MT
Sbjct: 177 EVMT 180

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
               D  + + VK +T  +V    +V+  E + + GI+     ++ +
Sbjct: 25  TLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.6
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.42
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.35
4esy_A	170	CBS domain containing membrane protein; structural	99.33
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.32
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.32
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.3
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.28
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.28
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.28
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.27
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.27
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.26
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.26
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.25
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.24
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.24
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.24
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.24
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.23
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.22
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.22
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.22
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.21
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.21
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.21
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.19
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.19
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.19
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.15
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.14
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.13
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.11
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.11
4esy_A	170	CBS domain containing membrane protein; structural	99.09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.09
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.08
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.07
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.07
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.07
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.07
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.06
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.05
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.05
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.04
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.04
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.03
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.02
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.02
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.02
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.01
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.0
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.0
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.99
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.98
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.98
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.96
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.95
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.95
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.95
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.95
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.94
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.94
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.94
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.93
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.92
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.92
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.91
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.91
3ddj_A	296	CBS domain-containing protein; structural genomics	98.9
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.9
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.89
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.89
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.89
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.88
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.87
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.87
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.87
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.85
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.83
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.83
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.83
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.82
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.81
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.81
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.8
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.8
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.8
3ddj_A	296	CBS domain-containing protein; structural genomics	98.79
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.78
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.78
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.77
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.77
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.77
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.74
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.72
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.72
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.7
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.7
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.7
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.67
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.59
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.59
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.59
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.54
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.47
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.45
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.42
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.36
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.35
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.35
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.32
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.21
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.2
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.2
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.18
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.12
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.05
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.99
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.98
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.98
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.93
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.78
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.55
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	87.46
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	86.65

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.60  E-value=2.8e-15  Score=93.29  Aligned_cols=66  Identities=33%  Similarity=0.557  Sum_probs=59.4

Q ss_pred             cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccccccCC
Q 032532           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEEV  139 (139)
Q Consensus        71 ~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~v  139 (139)
                      ++++.|++|+.+|+++|.+++++++||+   ++++++||+|.+|+++++...+..+.+.+|+++|++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~---d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~   67 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVM---EGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNP   67 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEE---ETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEE---ECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCC
Confidence            6889999999999999999999999999   36899999999999988877777666789999999874

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.35  E-value=3.7e-12  Score=86.75  Aligned_cols=78  Identities=28%  Similarity=0.420  Sum_probs=66.5

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      +...+++++|++       ++.++++++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+...+.. ...+
T Consensus         4 l~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~-~~~~   73 (138)
T 2yzi_A            4 DMKAPIKVYMTK-------KLLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGLP-YDIP   73 (138)
T ss_dssp             CTTSBGGGTCBC-------CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCCC-TTSB
T ss_pred             hhhhhHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHhcCCc-ccCC
Confidence            456789999998       79999999999999999999999999999  6789999999999997555444432 4678


Q ss_pred             cccccccC
Q 032532          131 VGDIMTEE  138 (139)
Q Consensus       131 v~~im~~~  138 (139)
                      +.++|.++
T Consensus        74 v~~~m~~~   81 (138)
T 2yzi_A           74 VERIMTRN   81 (138)
T ss_dssp             GGGTCBCS
T ss_pred             HHHHhhCC
Confidence            99999764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.33  E-value=3.4e-13  Score=95.71  Aligned_cols=59  Identities=36%  Similarity=0.549  Sum_probs=54.6

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      +...+|+|+|++       ++.++.+++|+.+|++.|.+++++++||+  |++|+++|+||.+|++++
T Consensus        15 l~~~~V~diM~~-------~v~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~g~lvGiit~~Dll~~   73 (170)
T 4esy_A           15 IRQVPIRDILTS-------PVVTVREDDTLDAVAKTMLEHQIGCAPVV--DQNGHLVGIITESDFLRG   73 (170)
T ss_dssp             HHTSBGGGGCCS-------CCCCEETTSBHHHHHHHHHHTTCSEEEEE--CTTSCEEEEEEGGGGGGG
T ss_pred             HcCCCHHHhcCC-------CCcEECCcCcHHHHHHHHHHcCCeEEEEE--cCCccEEEEEEHHHHHHH
Confidence            345789999999       89999999999999999999999999999  789999999999999764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.32  E-value=4.4e-12  Score=89.41  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=66.1

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCC---CccCc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS---SKSTK  130 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~---~~~~~  130 (139)
                      .+++++|++..     ++.++.+++|+.+|++.|.+++++++||+  |++++++|+||.+|+++++...+..   ....+
T Consensus        15 ~~~~~iM~P~~-----~v~~v~~~~t~~~a~~~m~~~~~s~~pVv--d~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~   87 (156)
T 3k6e_A           15 GQEETFLTPAK-----NLAVLIDTHNADHATLLLSQMTYTRVPVV--TDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTD   87 (156)
T ss_dssp             TTGGGGEEETT-----SSCCEETTSBHHHHHHHHTTSSSSEEEEE--CC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSB
T ss_pred             ccHHHhCcchh-----HeEEECCcCCHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEecchhhhhhhcccccccccccC
Confidence            57899999754     68999999999999999999999999999  7789999999999999887655432   13567


Q ss_pred             cccccccCC
Q 032532          131 VGDIMTEEV  139 (139)
Q Consensus       131 v~~im~~~v  139 (139)
                      +.++|++++
T Consensus        88 v~~im~~~~   96 (156)
T 3k6e_A           88 IVHMTKTDV   96 (156)
T ss_dssp             GGGTCBCSC
T ss_pred             HHHhhcCCc
Confidence            899998753

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.32  E-value=8.7e-12  Score=87.84  Aligned_cols=82  Identities=29%  Similarity=0.381  Sum_probs=69.0

Q ss_pred             CCccCcHHHHhhhc-CCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCcc
Q 032532           50 GFESTTISDILKAK-GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (139)
Q Consensus        50 ~~~~~~v~dvm~~~-~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~  128 (139)
                      .+..++|+++|+++ .     ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++++...+.....
T Consensus        20 ~l~~~~v~dim~~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~   92 (165)
T 3fhm_A           20 QGMATFVKDLLDRKGR-----DVVTVGPDVSIGEAAGTLHAHKIGAVVVT--DADGVVLGIFTERDLVKAVAGQGAASLQ   92 (165)
T ss_dssp             SSSSCBHHHHHHHHCS-----CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHGGGGGT
T ss_pred             hhhhcCHHHHhccCCC-----CCeEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHhcCCcccc
Confidence            34568999999962 1     58999999999999999999999999999  7789999999999999887654323356


Q ss_pred             CccccccccC
Q 032532          129 TKVGDIMTEE  138 (139)
Q Consensus       129 ~~v~~im~~~  138 (139)
                      .++.++|.++
T Consensus        93 ~~v~~~m~~~  102 (165)
T 3fhm_A           93 QSVSVAMTKN  102 (165)
T ss_dssp             SBGGGTSBSS
T ss_pred             CCHHHHhcCC
Confidence            7899999765

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.30  E-value=9.5e-12  Score=84.49  Aligned_cols=75  Identities=35%  Similarity=0.605  Sum_probs=64.7

Q ss_pred             CcHHHHhh---hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           54 TTISDILK---AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        54 ~~v~dvm~---~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      .+++++|+   +       ++.++++++++.+|++.|.+++++++||+  | +++++|+||.+|+++.+...+......+
T Consensus         6 ~~v~~im~~~~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~~~~~~~~~~~   75 (135)
T 2rc3_A            6 KTVKHLLQEKGH-------TVVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQ   75 (135)
T ss_dssp             CBHHHHHHHHCC-------CCCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSB
T ss_pred             eeHHHHHhcCCC-------CcEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEehHHHHHHHHHcCCCcccCC
Confidence            48999999   6       78999999999999999999999999999  5 7899999999999876555544335778


Q ss_pred             cccccccC
Q 032532          131 VGDIMTEE  138 (139)
Q Consensus       131 v~~im~~~  138 (139)
                      +.++|.++
T Consensus        76 v~~~m~~~   83 (135)
T 2rc3_A           76 VKEIMTRQ   83 (135)
T ss_dssp             GGGTSBCS
T ss_pred             HHHhccCC
Confidence            99999765

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.28  E-value=6.2e-12  Score=85.54  Aligned_cols=77  Identities=13%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC-CCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~-~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      .+|+++|++..     ++.++++++++.+|++.|.+++++++||+  ++ +++++|+||.+|+++++. .+......++.
T Consensus         2 ~~v~~iM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--~~~~~~lvGivt~~dl~~~~~-~~~~~~~~~v~   73 (130)
T 3hf7_A            2 VSVNDIMVPRN-----EIVGIDINDDWKSIVRQLTHSPHGRIVLY--RDSLDDAISMLRVREAYRLMT-EKKEFTKEIML   73 (130)
T ss_dssp             CBHHHHSEEGG-----GCCEEETTSCHHHHHHHHHTCSSSEEEEE--SSSGGGEEEEEEHHHHHHHHT-SSSCCCHHHHH
T ss_pred             cCHHHhCccHH-----HEEEEcCCCCHHHHHHHHHHCCCCeEEEE--cCCCCcEEEEEEHHHHHHHHh-ccCccchhhHH
Confidence            57999997522     58999999999999999999999999999  44 589999999999988764 33222345788


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|.++
T Consensus        74 ~~m~~~   79 (130)
T 3hf7_A           74 RAADEI   79 (130)
T ss_dssp             HHSBCC
T ss_pred             HhccCC
Confidence            888554

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.28  E-value=1.2e-11  Score=82.49  Aligned_cols=74  Identities=22%  Similarity=0.324  Sum_probs=63.0

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      ++++++|.+       ++.++.+++++.+|++.|.+++.+++||+  | +++++|+||.+|+++.+. .+......++.+
T Consensus         1 m~v~~~m~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~G~it~~dl~~~~~-~~~~~~~~~v~~   69 (125)
T 1pbj_A            1 MRVEDVMVT-------DVDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIA-EGDDLAEVKVWE   69 (125)
T ss_dssp             -CHHHHCBC-------SCCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHH-HTCCTTTSBHHH
T ss_pred             CCHHHhcCC-------CceEECCCCcHHHHHHHHHHcCCCEEEEE--e-CCeeEEEEeHHHHHHHHh-cCCcccccCHHH
Confidence            478999998       89999999999999999999999999999  6 899999999999987654 333334678899


Q ss_pred             ccccC
Q 032532          134 IMTEE  138 (139)
Q Consensus       134 im~~~  138 (139)
                      +|.++
T Consensus        70 ~m~~~   74 (125)
T 1pbj_A           70 VMERD   74 (125)
T ss_dssp             HCBCG
T ss_pred             HcCCC
Confidence            98754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.28  E-value=1.5e-11  Score=84.16  Aligned_cols=75  Identities=19%  Similarity=0.269  Sum_probs=64.4

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCC--ceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK--SVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~--~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      ..+++++|++       ++.++.+++++.+|++.|.+++++++||+  |+++  +++|+||.+|+++.+. .+.. .+.+
T Consensus         4 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~~~Givt~~dl~~~~~-~~~~-~~~~   72 (141)
T 2rih_A            4 AIRTSELLKR-------PPVSLPETATIREVATELAKNRVGLAVLT--ARDNPKRPVAVVSERDILRAVA-QRLD-LDGP   72 (141)
T ss_dssp             -CBGGGGCCS-------CCEEEETTCBHHHHHHHHHHHTCSEEEEE--ETTEEEEEEEEEEHHHHHHHHH-TTCC-TTSB
T ss_pred             ceEHHHHhcC-------CCeEeCCCCcHHHHHHHHHHcCCCEEEEE--cCCCcceeEEEEEHHHHHHHHh-cCCC-CCCC
Confidence            4689999998       89999999999999999999999999999  5677  9999999999988764 3433 4678


Q ss_pred             cccccccC
Q 032532          131 VGDIMTEE  138 (139)
Q Consensus       131 v~~im~~~  138 (139)
                      +.++|.++
T Consensus        73 v~~~m~~~   80 (141)
T 2rih_A           73 AMPIANSP   80 (141)
T ss_dssp             SGGGCBCC
T ss_pred             HHHHcCCC
Confidence            99999765

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.27  E-value=1.5e-11  Score=84.97  Aligned_cols=75  Identities=16%  Similarity=0.301  Sum_probs=63.6

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      +...+|+++|++..     ++.++++++++.+|++.|.+++++++||+  |++ ++++|+||.+|+++.+....    ..
T Consensus        20 l~~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~~~----~~   88 (148)
T 3lv9_A           20 FEEKKIREIMVPRT-----DMVCIYESDSEEKILAILKEEGVTRYPVC--RKNKDDILGFVHIRDLYNQKINEN----KI   88 (148)
T ss_dssp             GGTCBGGGTSEETT-----TCCCEETTCCHHHHHHHHHHSCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHHS----CC
T ss_pred             cCCCCHHHccccHH-----HeEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhcCC----Cc
Confidence            45689999999732     58899999999999999999999999999  666 89999999999998765432    56


Q ss_pred             ccccccc
Q 032532          130 KVGDIMT  136 (139)
Q Consensus       130 ~v~~im~  136 (139)
                      +++++|.
T Consensus        89 ~v~~~m~   95 (148)
T 3lv9_A           89 ELEEILR   95 (148)
T ss_dssp             CGGGTCB
T ss_pred             cHHHhcC
Confidence            7889983

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.27  E-value=1.8e-11  Score=87.76  Aligned_cols=80  Identities=21%  Similarity=0.400  Sum_probs=66.4

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      +....+++++|++       ++.++.+++++.+|++.|.+++++++||+  |++++++|+||.+|+++.+...+......
T Consensus         5 g~~~~~v~~im~~-------~~~~v~~~~~l~ea~~~~~~~~~~~~pVv--d~~g~~vGivt~~dl~~~~~~~~~~~~~~   75 (184)
T 1pvm_A            5 GHMFMRVEKIMNS-------NFKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEV   75 (184)
T ss_dssp             --CCCBGGGTSBT-------TCCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGS
T ss_pred             cccccCHHHhcCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhcccCcccC
Confidence            3345789999998       79999999999999999999999999999  67799999999999988764323233567


Q ss_pred             ccccccccC
Q 032532          130 KVGDIMTEE  138 (139)
Q Consensus       130 ~v~~im~~~  138 (139)
                      +++++|.++
T Consensus        76 ~v~~im~~~   84 (184)
T 1pvm_A           76 PIRLVMRKP   84 (184)
T ss_dssp             BGGGTSBSS
T ss_pred             CHHHHhCCC
Confidence            899999864

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.26  E-value=1.7e-11  Score=81.57  Aligned_cols=71  Identities=27%  Similarity=0.437  Sum_probs=62.1

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      ++++++|.+       ++.++++++++.+|++.|.+++.+++||+  |++++++|+||.+|+++++..     ...++++
T Consensus         1 ~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~-----~~~~v~~   66 (122)
T 3kpb_A            1 TLVKDILSK-------PPITAHSNISIMEAAKILIKHNINHLPIV--DEHGKLVGIITSWDIAKALAQ-----NKKTIEE   66 (122)
T ss_dssp             CBHHHHCCS-------CCCCEETTSBHHHHHHHHHHHTCSCEEEE--CTTSBEEEEECHHHHHHHHHT-----TCCBGGG
T ss_pred             CchHHhhCC-------CCEEeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCCEEEEEEHHHHHHHHHh-----cccCHHH
Confidence            478999998       89999999999999999999999999999  778999999999999887642     1347888


Q ss_pred             ccccC
Q 032532          134 IMTEE  138 (139)
Q Consensus       134 im~~~  138 (139)
                      +|.++
T Consensus        67 ~~~~~   71 (122)
T 3kpb_A           67 IMTRN   71 (122)
T ss_dssp             TSBSS
T ss_pred             HhcCC
Confidence            88664

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.26  E-value=6e-12  Score=85.18  Aligned_cols=77  Identities=26%  Similarity=0.481  Sum_probs=64.2

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      ..+++++|.+       ++.++++++++.+|++.|.+++++++||+  |++++++|+||.+|+++..+..+......+++
T Consensus         7 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~   77 (133)
T 1y5h_A            7 MTTARDIMNA-------GVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTATAG   77 (133)
T ss_dssp             -CCHHHHSEE-------TCCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHH
T ss_pred             hcCHHHHhcC-------CceEeCCCCCHHHHHHHHHHhCCCeEEEE--CCCCeEEEEEeHHHHHHHHHhcCCCccccCHH
Confidence            4689999998       78999999999999999999999999999  67899999999999985333344333467889


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|.++
T Consensus        78 ~~m~~~   83 (133)
T 1y5h_A           78 ELARDS   83 (133)
T ss_dssp             HHHTTC
T ss_pred             HHhcCC
Confidence            998754

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.25  E-value=4.5e-12  Score=86.75  Aligned_cols=77  Identities=17%  Similarity=0.315  Sum_probs=63.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ..+|+++|++..     ++.++.+++|+.+|++.|.+++++++||+  +++ ++++|+||.+|+++++. .+. ....++
T Consensus         2 ~~~v~~iM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~-~~~-~~~~~v   72 (136)
T 3lfr_A            2 DLQVRDIMVPRS-----QMISIKATQTPREFLPAVIDAAHSRYPVI--GESHDDVLGVLLAKDLLPLIL-KAD-GDSDDV   72 (136)
T ss_dssp             -CBHHHHSEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGG-SSS-GGGCCG
T ss_pred             CCChHhccccHH-----HEEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHH-hcc-CCCcCH
Confidence            468999999421     68999999999999999999999999999  566 79999999999987653 122 246789


Q ss_pred             ccccccC
Q 032532          132 GDIMTEE  138 (139)
Q Consensus       132 ~~im~~~  138 (139)
                      .++|+++
T Consensus        73 ~~~m~~~   79 (136)
T 3lfr_A           73 KKLLRPA   79 (136)
T ss_dssp             GGTCBCC
T ss_pred             HHHcCCC
Confidence            9999764

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.24  E-value=1.4e-11  Score=86.23  Aligned_cols=76  Identities=29%  Similarity=0.424  Sum_probs=64.7

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      +..++|+++|++       + +++.+++++.+|++.|.+++++++||+  |++++++|+||.+|+++++... ......+
T Consensus        14 l~~~~v~~im~~-------~-~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~-~~~~~~~   82 (159)
T 3fv6_A           14 LKKLQVKDFQSI-------P-VVIHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRASIGQ-QELTSVP   82 (159)
T ss_dssp             HTTCBGGGSCBC-------C-CEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHTSC-SCTTTCB
T ss_pred             HhhCCHHHHcCC-------C-EEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCcEEEEEeHHHHHHHhhcc-CcccCcC
Confidence            346799999987       4 599999999999999999999999999  7789999999999998876433 2335778


Q ss_pred             ccccccc
Q 032532          131 VGDIMTE  137 (139)
Q Consensus       131 v~~im~~  137 (139)
                      +.++|++
T Consensus        83 v~~~m~~   89 (159)
T 3fv6_A           83 VHIIMTR   89 (159)
T ss_dssp             GGGTSEE
T ss_pred             HHHHHcC
Confidence            9999985

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.24  E-value=2.7e-11  Score=81.92  Aligned_cols=75  Identities=35%  Similarity=0.531  Sum_probs=64.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++++++||+  | +++++|+||.+|+++.+. .+.. ...++
T Consensus         2 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d-~~~~~Givt~~dl~~~~~-~~~~-~~~~v   69 (133)
T 2ef7_A            2 EEEIVKEYMKT-------QVISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIG-KGKS-LETKA   69 (133)
T ss_dssp             CCCBGGGTSBC-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH-TTCC-TTCBG
T ss_pred             CcccHHHhccC-------CCEEECCCCcHHHHHHHHHhcCCCEEEEE--E-CCEEEEEEcHHHHHHHHh-cCCC-cccCH
Confidence            35789999998       79999999999999999999999999999  6 789999999999987664 3333 46789


Q ss_pred             ccccccC
Q 032532          132 GDIMTEE  138 (139)
Q Consensus       132 ~~im~~~  138 (139)
                      .++|.++
T Consensus        70 ~~~~~~~   76 (133)
T 2ef7_A           70 EEFMTAS   76 (133)
T ss_dssp             GGTSEEC
T ss_pred             HHHcCCC
Confidence            9999754

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.24  E-value=1.5e-11  Score=85.15  Aligned_cols=78  Identities=22%  Similarity=0.365  Sum_probs=65.4

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      .++++++|++..     ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+. .+......+++
T Consensus        27 ~~~v~dim~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~-~~~~~~~~~v~   98 (149)
T 3k2v_A           27 LLRVNDIMHTGD-----EIPHVGLQATLRDALLEITRKNLGMTAIC--DDDMNIIGIFTDGDLRRVFD-TGVDMRDASIA   98 (149)
T ss_dssp             TSBGGGTSBCGG-----GSCEECTTCBHHHHHHHHHHHTSSEEEEE--CTTCBEEEEEEHHHHHHHHC-SSSCCTTCBHH
T ss_pred             ccCHHHHhcCCC-----CCeEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCcEEEEecHHHHHHHHh-cCCCcccCcHH
Confidence            368999998632     47899999999999999999999999999  77899999999999988663 33333577899


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|+++
T Consensus        99 ~~m~~~  104 (149)
T 3k2v_A           99 DVMTRG  104 (149)
T ss_dssp             HHSEES
T ss_pred             HHcCCC
Confidence            999764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.24  E-value=1.2e-11  Score=85.45  Aligned_cols=80  Identities=15%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC----CCc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SSK  127 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~----~~~  127 (139)
                      ..++|+++|+++.     ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++++.....    ...
T Consensus        13 ~~~~v~~im~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~   85 (150)
T 3lqn_A           13 QQIFVKDLMISSE-----KVAHVQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLISTAMILDGILGLERIEFERLE   85 (150)
T ss_dssp             HHCBHHHHSEEGG-----GSCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHTBCSSSBCGGGGG
T ss_pred             hcCChhhcccCCC-----ceEEECCCCcHHHHHHHHHHcCCcEEEEE--CCCCCEEEEEEHHHHHHHHHhhcccchhHHh
Confidence            4589999999521     58999999999999999999999999999  778999999999999887632110    113


Q ss_pred             cCccccccccC
Q 032532          128 STKVGDIMTEE  138 (139)
Q Consensus       128 ~~~v~~im~~~  138 (139)
                      ..+++++|.++
T Consensus        86 ~~~v~~~m~~~   96 (150)
T 3lqn_A           86 EMKVEQVMKQD   96 (150)
T ss_dssp             GCBGGGTCBSS
T ss_pred             cCCHHHHhcCC
Confidence            56889999865

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.23  E-value=7.3e-12  Score=84.56  Aligned_cols=76  Identities=12%  Similarity=0.285  Sum_probs=62.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ..+++++|++..     ++.++.+++++.+|++.|.+++++++||+  |++ ++++|+||.+|+++.+.. +.  ...++
T Consensus         2 ~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~vGivt~~dl~~~~~~-~~--~~~~v   71 (127)
T 3nqr_A            2 DQRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVI--SEDKDHIEGILMAKDLLPFMRS-DA--EAFSM   71 (127)
T ss_dssp             -CBHHHHSEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGGST-TC--CCCCH
T ss_pred             CcCHHHhcccHH-----HeEEEcCCCCHHHHHHHHHhCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHhc-cC--CCCCH
Confidence            368999999621     48999999999999999999999999999  666 899999999999876532 21  36778


Q ss_pred             ccccccC
Q 032532          132 GDIMTEE  138 (139)
Q Consensus       132 ~~im~~~  138 (139)
                      +++|+++
T Consensus        72 ~~~m~~~   78 (127)
T 3nqr_A           72 DKVLRTA   78 (127)
T ss_dssp             HHHCBCC
T ss_pred             HHHcCCC
Confidence            9998664

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.22  E-value=2.1e-11  Score=82.81  Aligned_cols=76  Identities=22%  Similarity=0.424  Sum_probs=64.6

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHH-HHHHHHcCCCCccCc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDY-LRKIIVQGRSSKSTK  130 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dl-l~~~~~~~~~~~~~~  130 (139)
                      ...+++++|++       ++.++.+++++.+|++.|.+++.+++||+  |++++++|+||.+|+ ++.+. .+.. ...+
T Consensus         6 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~-~~~~-~~~~   74 (138)
T 2p9m_A            6 KNIKVKDVMTK-------NVITAKRHEGVVEAFEKMLKYKISSLPVI--DDENKVIGIVTTTDIGYNLIR-DKYT-LETT   74 (138)
T ss_dssp             TTCBGGGTSBC-------SCCCEETTSBHHHHHHHHHHHTCCEEEEE--CTTCBEEEEEEHHHHHHHHTT-TCCC-SSCB
T ss_pred             ccCCHHHhhcC-------CceEECCCCcHHHHHHHHHHCCCcEEEEE--CCCCeEEEEEEHHHHHHHHHh-hccc-CCcC
Confidence            45789999998       78999999999999999999999999999  678999999999999 77553 2322 4678


Q ss_pred             cccccccC
Q 032532          131 VGDIMTEE  138 (139)
Q Consensus       131 v~~im~~~  138 (139)
                      +.++|.++
T Consensus        75 v~~~m~~~   82 (138)
T 2p9m_A           75 IGDVMTKD   82 (138)
T ss_dssp             HHHHSCSS
T ss_pred             HHHHhCCC
Confidence            89998754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.22  E-value=2.6e-11  Score=86.23  Aligned_cols=75  Identities=16%  Similarity=0.333  Sum_probs=60.9

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      +...+|+++|++..     ++.++++++|+.+|++.|.+++++++||+  |++ ++++|+||.+|++++... +   ...
T Consensus        39 l~~~~v~diM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~~-~---~~~  107 (172)
T 3lhh_A           39 LDERTISSLMVPRS-----DIVFLDLNLPLDANLRTVMQSPHSRFPVC--RNNVDDMVGIISAKQLLSESIA-G---ERL  107 (172)
T ss_dssp             ----CTTTTSEEGG-----GCCCEETTSCHHHHHHHHHTCCCSEEEEE--SSSTTSEEEEEEHHHHHHHHHT-T---CCC
T ss_pred             cCCCCHHHhCccHH-----HeEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCeEEEEEEHHHHHHHHhh-c---Ccc
Confidence            45689999999421     68999999999999999999999999999  666 899999999999987642 2   257


Q ss_pred             ccccccc
Q 032532          130 KVGDIMT  136 (139)
Q Consensus       130 ~v~~im~  136 (139)
                      ++.++|.
T Consensus       108 ~v~~im~  114 (172)
T 3lhh_A          108 ELVDLVK  114 (172)
T ss_dssp             CGGGGCB
T ss_pred             cHHHHhc
Confidence            8899993

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.21  E-value=1.6e-11  Score=82.78  Aligned_cols=74  Identities=16%  Similarity=0.183  Sum_probs=62.5

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      ..+++++|.+       ++.++++++++.+|++.|.+++++++||+  |+ ++++|+||.+|+++.+. .+.. ...+++
T Consensus         4 s~~v~~~m~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~-~~~~Givt~~dl~~~~~-~~~~-~~~~v~   71 (128)
T 3gby_A            4 SVTFSYLAET-------DYPVFTLGGSTADAARRLAASGCACAPVL--DG-ERYLGMVHLSRLLEGRK-GWPT-VKEKLG   71 (128)
T ss_dssp             TCBGGGGCBC-------CSCCEETTSBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHTTCS-SSCC-TTCBCC
T ss_pred             ceEHHHhhcC-------CcceECCCCCHHHHHHHHHHCCCcEEEEE--EC-CEEEEEEEHHHHHHHHh-hCCc-ccCcHH
Confidence            5789999999       89999999999999999999999999999  56 99999999999987542 2222 236788


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|.++
T Consensus        72 ~~m~~~   77 (128)
T 3gby_A           72 EELLET   77 (128)
T ss_dssp             GGGCBC
T ss_pred             HHccCC
Confidence            998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.21  E-value=8.6e-12  Score=84.51  Aligned_cols=78  Identities=10%  Similarity=0.237  Sum_probs=61.8

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      +...+++++|++..     ++.++++++++.+|++.|.+++++++||+  |++ ++++|+||.+|+++++. .+.  ...
T Consensus         3 l~~~~v~~iM~~~~-----~v~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~-~~~--~~~   72 (130)
T 3i8n_A            3 AQDVPVTQVMTPRP-----VVFRVDATMTINEFLDKHKDTPFSRPLVY--SEQKDNIIGFVHRLELFKMQQ-SGS--GQK   72 (130)
T ss_dssp             ----CCTTTSCCBC-----CCCEEETTSBHHHHHHHTTTCSCSCCEEE--SSSTTCEEEECCHHHHHHHHH-TTT--TTS
T ss_pred             cCcCCHhhCCCcHH-----HEEEEcCCCCHHHHHHHHHhCCCCEEEEE--eCCCCcEEEEEEHHHHHHHHh-cCC--CcC
Confidence            34678999999632     46789999999999999999999999999  665 89999999999998764 332  367


Q ss_pred             ccccccccC
Q 032532          130 KVGDIMTEE  138 (139)
Q Consensus       130 ~v~~im~~~  138 (139)
                      +++++|+++
T Consensus        73 ~v~~~m~~~   81 (130)
T 3i8n_A           73 QLGAVMRPI   81 (130)
T ss_dssp             BHHHHSEEC
T ss_pred             CHHHHhcCC
Confidence            788988643

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.21  E-value=1.7e-11  Score=82.98  Aligned_cols=75  Identities=12%  Similarity=0.278  Sum_probs=61.8

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      ...+|+++|++..     ++.++++++++.+|++.|.+++++++||+  |++ ++++|+||.+|+++++.     ....+
T Consensus         3 ~~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~~Givt~~dl~~~~~-----~~~~~   70 (129)
T 3jtf_A            3 AERTVADIMVPRS-----RMDLLDISQPLPQLLATIIETAHSRFPVY--EDDRDNIIGILLAKDLLRYML-----EPALD   70 (129)
T ss_dssp             -CCBHHHHCEEGG-----GCCCEETTSCHHHHHHHHHHSCCSEEEEE--SSSTTCEEEEEEGGGGGGGGT-----CTTSC
T ss_pred             CCCCHHHhCccHH-----HeEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCcEEEEEEHHHHHhHhc-----cCCcC
Confidence            3578999999421     67899999999999999999999999999  564 89999999999987642     13567


Q ss_pred             cccccccC
Q 032532          131 VGDIMTEE  138 (139)
Q Consensus       131 v~~im~~~  138 (139)
                      ++++|+++
T Consensus        71 v~~~m~~~   78 (129)
T 3jtf_A           71 IRSLVRPA   78 (129)
T ss_dssp             GGGGCBCC
T ss_pred             HHHHhCCC
Confidence            88888754

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.19  E-value=3.4e-11  Score=84.49  Aligned_cols=77  Identities=18%  Similarity=0.226  Sum_probs=63.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc-------CCC
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ-------GRS  125 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~-------~~~  125 (139)
                      ..+|+++|++       ++.++.+++|+.+|++.|.+++++++||+  |++++++|+||.+|+++.+...       ...
T Consensus         4 ~~~v~dim~~-------~~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~   74 (160)
T 2o16_A            4 MIKVEDMMTR-------HPHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDSL   74 (160)
T ss_dssp             CCBGGGTSEE-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC--------
T ss_pred             cCcHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHHHHHhhcccccccch
Confidence            4689999998       79999999999999999999999999999  6789999999999998876431       111


Q ss_pred             CccCccccccccC
Q 032532          126 SKSTKVGDIMTEE  138 (139)
Q Consensus       126 ~~~~~v~~im~~~  138 (139)
                      ....++.++|.++
T Consensus        75 ~~~~~v~~im~~~   87 (160)
T 2o16_A           75 AFETPLFEVMHTD   87 (160)
T ss_dssp             -CCCBHHHHSCSC
T ss_pred             hcccCHHHHhcCC
Confidence            2466788888764

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.19  E-value=5.4e-11  Score=98.56  Aligned_cols=77  Identities=23%  Similarity=0.308  Sum_probs=67.7

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCC-CCHHHHHHHHHHcCCCEEEEEecC-CCCceEEEEeHHHHHHHHHHcCCCCccCc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTK  130 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~-~tl~~a~~~m~~~~~~~lpVv~~d-~~~~lvGivt~~dll~~~~~~~~~~~~~~  130 (139)
                      ..+|+++|++       +++++.++ +|+.+|+++|.+++++++||+  | ++++++|+||.+||++++...... .+.+
T Consensus       383 ~~~V~diM~~-------~~vtv~~~~~tv~ea~~~m~~~~~~~lpVv--d~~~g~lvGiVt~~Dll~~l~~~~~~-~~~~  452 (527)
T 3pc3_A          383 SLAIAELELP-------APPVILKSDATVGEAIALMKKHRVDQLPVV--DQDDGSVLGVVGQETLITQIVSMNRQ-QSDP  452 (527)
T ss_dssp             TSBGGGGCCC-------CCSCCEETTCBHHHHHHHHHHHTCSEEEEE--CTTTCCEEEEEEHHHHHHHHHHHCCC-TTSB
T ss_pred             CCcHHHhCcC-------CCeEEcCCCCcHHHHHHHHHHcCCCeEEEE--ECCCCEEEEEEEHHHHHHHHHhccCc-CCCc
Confidence            5789999998       89999999 999999999999999999999  6 689999999999999988654333 5788


Q ss_pred             cccccccCC
Q 032532          131 VGDIMTEEV  139 (139)
Q Consensus       131 v~~im~~~v  139 (139)
                      |.++|++++
T Consensus       453 V~~im~~~~  461 (527)
T 3pc3_A          453 AIKALNKRV  461 (527)
T ss_dssp             GGGGEETTC
T ss_pred             HHHHhcCCC
Confidence            999997653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.19  E-value=5.9e-11  Score=82.56  Aligned_cols=81  Identities=49%  Similarity=0.749  Sum_probs=65.3

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      .+|+|+|+++.+ -+.++.++.+++++.+|++.|.+++++++||+   ++++++|+||.+|+++++...+......++.+
T Consensus         7 ~~v~dim~~~~~-~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~---~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~   82 (157)
T 4fry_A            7 TTVAQILKAKPD-SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAGIVTERDYARKVVLQERSSKATRVEE   82 (157)
T ss_dssp             CBHHHHHHHSTT-TTCCCCEEETTSBHHHHHHHHHHHTCSEEEEE---SSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHH
T ss_pred             HHHHHHHhcccc-cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEe---eCCEEEEEEEHHHHHHHHHhccCCccccCHHH
Confidence            579999996200 00046999999999999999999999999997   48999999999999988765554435788999


Q ss_pred             ccccC
Q 032532          134 IMTEE  138 (139)
Q Consensus       134 im~~~  138 (139)
                      +|.++
T Consensus        83 ~m~~~   87 (157)
T 4fry_A           83 IMTAK   87 (157)
T ss_dssp             HSBSS
T ss_pred             HcCCC
Confidence            99764

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.15  E-value=4.5e-11  Score=83.15  Aligned_cols=76  Identities=18%  Similarity=0.306  Sum_probs=63.0

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEE-ecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV-KPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv-~~d~~~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      +...+|+++|++..     ++.++++++++.+|++.|.+++++++||+ + +++++++|+||.+|+++++...    ...
T Consensus        17 l~~~~v~~iM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d-~~~~~lvGivt~~dl~~~~~~~----~~~   86 (153)
T 3oco_A           17 MNDKVASDVMVDRT-----SMSVVDVDETIADALLLYLEEQYSRFPVTAD-NDKDKIIGYAYNYDIVRQARID----DKA   86 (153)
T ss_dssp             HHHCBHHHHSEEGG-----GCCCEETTSBHHHHHHHHHHHCCSEEEEEET-TEEEEEEEEEEHHHHHHHHHHH----TTS
T ss_pred             cCCCEeeeEecchh-----heEEEcCCCCHHHHHHHHHhCCCCEEEEEEC-CCCCcEEEEEEHHHHHhHHhcC----CCC
Confidence            34578999998522     58999999999999999999999999999 4 2358999999999999877543    257


Q ss_pred             ccccccc
Q 032532          130 KVGDIMT  136 (139)
Q Consensus       130 ~v~~im~  136 (139)
                      +++++|.
T Consensus        87 ~v~~~m~   93 (153)
T 3oco_A           87 KISTIMR   93 (153)
T ss_dssp             BGGGTCB
T ss_pred             cHHHHhC
Confidence            7899983

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.14  E-value=9.3e-11  Score=81.83  Aligned_cols=81  Identities=14%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC----CC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SS  126 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~----~~  126 (139)
                      +...+|+++|.+..     ++.++.+++++.+|++.|.+++++++||+  |++++++|+||.+|+++.+...+.    ..
T Consensus        11 l~~~~v~~im~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~lvGivt~~dl~~~~~~~~~~~~~~~   83 (159)
T 1yav_A           11 LLEATVGQFMIEAD-----KVAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFEKL   83 (159)
T ss_dssp             CTTCBHHHHSEEGG-----GSCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGGGT
T ss_pred             HhHhhHHHHhCCcc-----ceEEECCCCcHHHHHHHHHhCCCcEEEEE--CCCCCEEEEeEHHHHHHHhhhhcccchhhh
Confidence            44689999998632     47899999999999999999999999999  778899999999999887632110    02


Q ss_pred             ccCccccccccC
Q 032532          127 KSTKVGDIMTEE  138 (139)
Q Consensus       127 ~~~~v~~im~~~  138 (139)
                      ...++.++|.++
T Consensus        84 ~~~~v~~~m~~~   95 (159)
T 1yav_A           84 DQITVEEVMLTD   95 (159)
T ss_dssp             TTSBHHHHSBCS
T ss_pred             ccCCHHHhcCCC
Confidence            366788888754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.13  E-value=1.2e-10  Score=85.58  Aligned_cols=73  Identities=15%  Similarity=0.223  Sum_probs=63.6

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc---CCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCC
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH---NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSS  126 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~---~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~  126 (139)
                      .+...+++++|++       ++.++++++|+.+|++.|.++   +++.+||+  |++++++|+||.+|++.+       .
T Consensus        50 ~~~~~~v~~iM~~-------~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~~-------~  113 (205)
T 3kxr_A           50 QYSENEIGRYTDH-------QMLVLSDKATVAQAQRFFRRIELDCNDNLFIV--DEADKYLGTVRRYDIFKH-------E  113 (205)
T ss_dssp             HSCTTCGGGGCBC-------CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEE--CTTCBEEEEEEHHHHTTS-------C
T ss_pred             CCCcchHHhhccC-------ceEEECCCCcHHHHHHHHHhhCccCeeEEEEE--cCCCeEEEEEEHHHHHhC-------C
Confidence            4567899999999       899999999999999999987   89999999  788999999999998642       1


Q ss_pred             ccCccccccccC
Q 032532          127 KSTKVGDIMTEE  138 (139)
Q Consensus       127 ~~~~v~~im~~~  138 (139)
                      ...+++++|+++
T Consensus       114 ~~~~v~~im~~~  125 (205)
T 3kxr_A          114 PHEPLISLLSED  125 (205)
T ss_dssp             TTSBGGGGCCSS
T ss_pred             CcchHHHHhcCC
Confidence            467899999764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.11  E-value=2.1e-10  Score=81.44  Aligned_cols=67  Identities=21%  Similarity=0.273  Sum_probs=55.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEe--cCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWC--TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v--~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...+|+++|++..+.   ++.++  .+++++.+|++.|.+++++++||+++|++++++|+||..|+++.+..
T Consensus         9 ~~~~v~dim~~~~~~---~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A            9 HKTLAMDVMKPRRND---PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             CCCBHHHHSBSCTTS---CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             ccCcHHHHhcccccC---ceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            467899999982100   16788  99999999999999999999999932257899999999999887654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.11  E-value=2.2e-11  Score=85.18  Aligned_cols=77  Identities=16%  Similarity=0.301  Sum_probs=63.3

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      +...+|+++|++..     ++.++++++++.+|++.|.+++++++||+  |++ ++++|+||.+|+++++. .+   ...
T Consensus        35 l~~~~v~diM~~~~-----~~~~v~~~~~i~~a~~~m~~~~~~~~pVv--d~~~~~lvGivt~~dl~~~~~-~~---~~~  103 (156)
T 3oi8_A           35 FSDLEVRDAMITRS-----RMNVLKENDSIERITAYVIDTAHSRFPVI--GEDKDEVLGILHAKDLLKYMF-NP---EQF  103 (156)
T ss_dssp             HTTCBGGGTCEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEE--SSSTTCEEEEEEGGGGGGGSS-CG---GGC
T ss_pred             cCCCCHhheeeeHH-----HeEEECCCCCHHHHHHHHHHCCCCEEEEE--cCCCCcEEEEEEHHHHHHHHH-cC---Ccc
Confidence            45689999998632     58899999999999999999999999999  566 59999999999987542 11   367


Q ss_pred             ccccccccC
Q 032532          130 KVGDIMTEE  138 (139)
Q Consensus       130 ~v~~im~~~  138 (139)
                      +++++|+++
T Consensus       104 ~v~~im~~~  112 (156)
T 3oi8_A          104 HLKSILRPA  112 (156)
T ss_dssp             CHHHHCBCC
T ss_pred             cHHHHcCCC
Confidence            788998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.09  E-value=4.4e-11  Score=84.66  Aligned_cols=58  Identities=24%  Similarity=0.389  Sum_probs=53.9

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..+++++|++       ++.++++++++.+|+++|.+++++++||+  | +|+++||||.+||+++++
T Consensus       104 ~~~v~~im~~-------~~~tv~~~~~l~~a~~~m~~~~~~~lpVv--d-~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A          104 KLTASAVMTQ-------PVVTAAPEDSVGSIADQMRRHGIHRIPVV--Q-DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             TCBHHHHCBC-------CSCCBCTTSBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHTTTSC
T ss_pred             ccchhhhccc-------CcccCCcchhHHHHHHHHHHcCCcEEEEE--E-CCEEEEEEEHHHHHHHHH
Confidence            5689999999       89999999999999999999999999999  4 689999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.09  E-value=1.8e-10  Score=79.92  Aligned_cols=81  Identities=16%  Similarity=0.222  Sum_probs=63.5

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC----CCC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG----RSS  126 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~----~~~  126 (139)
                      +...+++++|.+..     ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+....    ...
T Consensus         8 l~~~~v~~im~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            8 FMQMTVKPFLIPAD-----KVAHVQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             --CCBSTTTCEEGG-----GSCCBCTTSBHHHHHHHHHHSSSSEEEEE--CTTCCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             HhhCcHHhhccCCc-----cceEECCCCcHHHHHHHHHHCCceEEEEE--cCCCCEEEEeeHHHHHHHHhcccccchHHh
Confidence            34678999998421     48899999999999999999999999999  67899999999999987653110    011


Q ss_pred             ccCccccccccC
Q 032532          127 KSTKVGDIMTEE  138 (139)
Q Consensus       127 ~~~~v~~im~~~  138 (139)
                      ...++.++|.++
T Consensus        81 ~~~~v~~~m~~~   92 (157)
T 2emq_A           81 ETMKVEEVMNRN   92 (157)
T ss_dssp             GTCBGGGTCBCC
T ss_pred             cCCcHHHHhCCC
Confidence            356789998764

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.08  E-value=1.5e-10  Score=78.81  Aligned_cols=77  Identities=21%  Similarity=0.252  Sum_probs=61.7

Q ss_pred             ccCcHHH---HhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCcc
Q 032532           52 ESTTISD---ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (139)
Q Consensus        52 ~~~~v~d---vm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~  128 (139)
                      ...++++   +|.+       ++.++.+++++.+|++.|.+++++++||+  |++++++|+||.+|+++.+.........
T Consensus         6 ~~~~v~~~~~~~~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~~~~~~~~   76 (144)
T 2nyc_A            6 LKIPIGDLNIITQD-------NMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLS   76 (144)
T ss_dssp             GGSBGGGSSCCBCS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC----CC
T ss_pred             hhcchhhcCCCCCC-------CceEECCCCcHHHHHHHHHHcCcceeeEE--cCCCcEEEEEcHHHHHHHhcccccccCC
Confidence            3467888   7776       78999999999999999999999999999  6789999999999998876432112235


Q ss_pred             Ccccccccc
Q 032532          129 TKVGDIMTE  137 (139)
Q Consensus       129 ~~v~~im~~  137 (139)
                      .++.++|.+
T Consensus        77 ~~v~~~m~~   85 (144)
T 2nyc_A           77 LSVGEALMR   85 (144)
T ss_dssp             SBHHHHHHH
T ss_pred             ccHHHHHhc
Confidence            678888864

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.07  E-value=2.8e-10  Score=81.39  Aligned_cols=76  Identities=16%  Similarity=0.280  Sum_probs=61.1

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHHHcCCCCcc
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKIIVQGRSSKS  128 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~~~~~~~~~  128 (139)
                      .+...+|+++|++..     ++.++++++++.+|++.|.+++++++||+  +++ ++++|+||.+||++++...    ..
T Consensus        32 ~l~~~~v~diM~~~~-----~v~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~lvGivt~~Dl~~~~~~~----~~  100 (173)
T 3ocm_A           32 TLAERSIRSIMTPRT-----DVSWVNIDDDAATIRQQLTAAPHSFFPVC--RGSLDEVVGIGRAKDLVADLITE----GR  100 (173)
T ss_dssp             HHTTSCSTTTSEEGG-----GCCCEETTSCHHHHHHHHHHSSCSEEEEE--SSSTTSEEEEEEHHHHHHHHHHH----SS
T ss_pred             ccCCCCHHHhCCcHH-----HeEEEeCCCCHHHHHHHHHhCCCCEEEEE--eCCCCCEEEEEEHHHHHHHHhcC----Cc
Confidence            345689999998522     58899999999999999999999999999  555 8999999999999876532    23


Q ss_pred             Ccccccccc
Q 032532          129 TKVGDIMTE  137 (139)
Q Consensus       129 ~~v~~im~~  137 (139)
                      .++. +|.+
T Consensus       101 ~~v~-~~~~  108 (173)
T 3ocm_A          101 VRRN-RLRD  108 (173)
T ss_dssp             CCGG-GSBC
T ss_pred             chhH-hcCC
Confidence            4566 5543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.07  E-value=2.6e-10  Score=79.45  Aligned_cols=78  Identities=12%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCE-EEEEecCCCCceEEEEeHHHHHHHHHHc------
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA-LVVVKPGEQKSVAGIITERDYLRKIIVQ------  122 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~-lpVv~~d~~~~lvGivt~~dll~~~~~~------  122 (139)
                      .+...+++++|++       ++.++.+++|+.+|++.|.+++++. +||+  |++ +++|+||.+|+++++...      
T Consensus        12 ~~~~~~v~~im~~-------~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vv--d~~-~~vGivt~~dl~~~~~~~~~~~~~   81 (157)
T 1o50_A           12 HMKVKDVCKLISL-------KPTVVEEDTPIEEIVDRILEDPVTRTVYVA--RDN-KLVGMIPVMHLLKVSGFHFFGFIP   81 (157)
T ss_dssp             TCBHHHHTTSSCC-------CCEEECTTCBHHHHHHHHHHSTTCCEEEEE--ETT-EEEEEEEHHHHHHHHHHHHHCCCC
T ss_pred             hhccccHhhcccC-------CCceECCCCCHHHHHHHHHhCCCCccEEEE--ECC-EEEEEEEHHHHHHHHhhhHHhhhc
Confidence            3456789999998       8999999999999999999999999 9999  556 999999999998875421      


Q ss_pred             --------CCCCccCcccccccc
Q 032532          123 --------GRSSKSTKVGDIMTE  137 (139)
Q Consensus       123 --------~~~~~~~~v~~im~~  137 (139)
                              .......++.++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~v~~im~~  104 (157)
T 1o50_A           82 KEELIRSSMKRLIAKNASEIMLD  104 (157)
T ss_dssp             -------CCCCCSSCBHHHHCBC
T ss_pred             cHHHHHHHHHHHcCCcHHHHcCC
Confidence                    112246678888875

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.07  E-value=3.7e-10  Score=78.47  Aligned_cols=75  Identities=16%  Similarity=0.324  Sum_probs=58.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++++.+||+  | +|+++|+||..|+++++...... ....+
T Consensus        76 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dil~~l~~~~~~-~~~~~  144 (157)
T 4fry_A           76 KATRVEEIMTA-------KVRYVEPSQSTDECMALMTEHRMRHLPVL--D-GGKLIGLISIGDLVKSVIADQQF-TISQL  144 (157)
T ss_dssp             SSCBHHHHSBS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHTTCCC-CCC--
T ss_pred             cccCHHHHcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--E-CCEEEEEEEHHHHHHHHHHHHHh-hHHHH
Confidence            46789999998       79999999999999999999999999999  5 79999999999999988644332 34455


Q ss_pred             cccccc
Q 032532          132 GDIMTE  137 (139)
Q Consensus       132 ~~im~~  137 (139)
                      .+++..
T Consensus       145 ~~~i~~  150 (157)
T 4fry_A          145 EHYIHG  150 (157)
T ss_dssp             ------
T ss_pred             HhhccC
Confidence            665543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.07  E-value=1.1e-10  Score=82.51  Aligned_cols=58  Identities=19%  Similarity=0.379  Sum_probs=52.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      .++|+++|+++.     ++.++.+++++.+|++.|.+++++++||+  |++++++|+||.+||++
T Consensus         3 ~~~v~dim~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~~~~~Givt~~dl~~   60 (180)
T 3sl7_A            3 GYTVGDFMTPRQ-----NLHVVKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDYDLLA   60 (180)
T ss_dssp             CCBHHHHSEEGG-----GCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHTC
T ss_pred             ceeHHHhcCCCC-----CceeeCCCCcHHHHHHHHHHcCCCeEEEE--CCCCeEEEEEEHHHHHh
Confidence            368999998732     47899999999999999999999999999  77899999999999974

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.06  E-value=3.4e-10  Score=78.76  Aligned_cols=76  Identities=14%  Similarity=0.249  Sum_probs=61.6

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC--CCceEEEEeHHHHHHHHHHcCCC----
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRS----  125 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~--~~~lvGivt~~dll~~~~~~~~~----  125 (139)
                      ...+++++|++       ++.++++++++.+|++.|.+++++++||+  |+  +++++|+||.+|+++.+.. +..    
T Consensus        11 ~~~~v~dim~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~pVv--d~~~~~~~~Givt~~dl~~~~~~-~~~~~~~   80 (164)
T 2pfi_A           11 HHVRVEHFMNH-------SITTLAKDTPLEEVVKVVTSTDVTEYPLV--ESTESQILVGIVQRAQLVQALQA-EPPSRAP   80 (164)
T ss_dssp             CSCBHHHHCBC-------CCCCEETTCBHHHHHHHHHTCCCSEEEEE--SCTTTCBEEEEEEHHHHHHHHHC--------
T ss_pred             cCCCHHHHcCC-------CCeEECCCCcHHHHHHHHHhCCCCceeEE--ecCCCCEEEEEEEHHHHHHHHHh-hccccCC
Confidence            45789999998       79999999999999999999999999999  54  7999999999999887632 211    


Q ss_pred             CccCcccccccc
Q 032532          126 SKSTKVGDIMTE  137 (139)
Q Consensus       126 ~~~~~v~~im~~  137 (139)
                      ....++.++|.+
T Consensus        81 ~~~~~v~~~m~~   92 (164)
T 2pfi_A           81 GHQQCLQDILAR   92 (164)
T ss_dssp             CCCCBHHHHHHT
T ss_pred             cccchhhhhhcc
Confidence            123567777764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.05  E-value=5.9e-10  Score=75.05  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=53.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|.+        +.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.++
T Consensus        67 ~~~~v~~~m~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           67 EAFSMDKVLRT--------AVVVPESKRVDRMLKEFRSQRYHMAIVI--DEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CCCCHHHHCBC--------CCEEETTCBHHHHHHHHHHTTCCEEEEE--CTTSCEEEEEEHHHHHHHC-
T ss_pred             CCCCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence            45789999955        6789999999999999999999999999  78899999999999998764

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.05  E-value=1.2e-10  Score=79.85  Aligned_cols=79  Identities=19%  Similarity=0.307  Sum_probs=60.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC---------
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG---------  123 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~---------  123 (139)
                      ..+++++|++..     ++.++.+++++.+|++.|.+++++++||+  |++++++|+||.+|+++.+....         
T Consensus         4 ~~~v~~im~~~~-----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~   76 (152)
T 4gqw_A            4 VYTVGEFMTKKE-----DLHVVKPTTTVDEALELLVENRITGFPVI--DEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQ   76 (152)
T ss_dssp             CSBGGGTSEEST-----TCCCBCTTSBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHTTCC----CCHHHHHHH
T ss_pred             eEEhhhccCCCC-----CCeEECCCCcHHHHHHHHHHcCCceEEEE--eCCCeEEEEEEHHHHHHhhcccCcccchHHHH
Confidence            478999998732     48899999999999999999999999999  77899999999999975321000         


Q ss_pred             ---CCCccCccccccccC
Q 032532          124 ---RSSKSTKVGDIMTEE  138 (139)
Q Consensus       124 ---~~~~~~~v~~im~~~  138 (139)
                         ......++.++|.++
T Consensus        77 ~~~~~~~~~~v~~~m~~~   94 (152)
T 4gqw_A           77 KLLSKTNGKLVGDLMTPA   94 (152)
T ss_dssp             TC-----CCBHHHHSEES
T ss_pred             HHHHHhccccHHHhcCCC
Confidence               011356788888764

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.04  E-value=3.1e-10  Score=86.16  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++|+|+|++       +++++.+++++.+|+++|.+++++++|||+++++++++|+||++||++++.
T Consensus        10 ~~~~~v~diMt~-------~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~   72 (250)
T 2d4z_A           10 KYNIQVGDIMVR-------DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ   72 (250)
T ss_dssp             CSSCBTTSSSBS-------SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             cCCCChHHhcCC-------CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHH
Confidence            346789999999       899999999999999999999999999994212478999999999988754

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.04  E-value=7.8e-10  Score=74.72  Aligned_cols=59  Identities=15%  Similarity=0.310  Sum_probs=53.9

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|.        ++.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|++++++
T Consensus        70 ~~~~v~~~m~--------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           70 GQKQLGAVMR--------PIQVVLNNTALPKVFDQMMTHRLQLALVV--DEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             TTSBHHHHSE--------ECCEEETTSCHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             CcCCHHHHhc--------CCcCcCCCCcHHHHHHHHHHcCCeEEEEE--cCCCCEEEEEEHHHHHHHHc
Confidence            3578999994        47899999999999999999999999999  78899999999999999875

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.04  E-value=7.3e-10  Score=76.33  Aligned_cols=59  Identities=20%  Similarity=0.381  Sum_probs=54.5

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..+++++| +       ++.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|++++++.
T Consensus        87 ~~~v~~~m-~-------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           87 KIELEEIL-R-------DIIYISENLTIDKALERIRKEKLQLAIVV--DEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             CCCGGGTC-B-------CCEEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSSEEEEEEHHHHHHHHHH
T ss_pred             CccHHHhc-C-------CCeEECCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHhC
Confidence            56899999 6       68999999999999999999999999999  778999999999999998753

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.03  E-value=8.4e-10  Score=82.72  Aligned_cols=75  Identities=19%  Similarity=0.415  Sum_probs=64.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      ..+++++|++       ++.++.+++++.+|++.|.+++++++||+  |++|+++|++|.+|+++.+.. +.. ...+++
T Consensus        83 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv--d~~~~~~Givt~~dl~~~~~~-~~~-~~~~v~  151 (280)
T 3kh5_A           83 NEPVREIMEE-------NVITLKENADIDEAIETFLTKNVGGAPIV--NDENQLISLITERDVIRALLD-KID-ENEVID  151 (280)
T ss_dssp             TSBGGGTSBC-------SCCCEETTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHGG-GSC-TTCBSG
T ss_pred             hhhHHHhcCC-------CCEEECCCCCHHHHHHHHHhCCCCEEEEE--cCCCEEEEEEEHHHHHHHHhh-cCC-CCCCHH
Confidence            4689999998       79999999999999999999999999999  788999999999999887643 332 345789


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|+++
T Consensus       152 ~~m~~~  157 (280)
T 3kh5_A          152 DYITRD  157 (280)
T ss_dssp             GGCBCS
T ss_pred             HHhCCC
Confidence            999764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.02  E-value=7.4e-10  Score=75.10  Aligned_cols=58  Identities=14%  Similarity=0.234  Sum_probs=53.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++.++| +       ++.++++++++.+|++.|.+++.+.+||+  |++|+++|+||.+|++++++
T Consensus        69 ~~~v~~~m-~-------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           69 KEIMLRAA-D-------EIYFVPEGTPLSTQLVKFQRNKKKVGLVV--DEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             HHHHHHHS-B-------CCCEEETTCBHHHHHHHHHHHCCCEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             hhhHHHhc-c-------CCeEeCCCCcHHHHHHHHHhcCCeEEEEE--cCCCCEEEEeeHHHHHHHHh
Confidence            35799999 4       58999999999999999999999999999  78899999999999999875

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.02  E-value=8.6e-10  Score=75.54  Aligned_cols=61  Identities=21%  Similarity=0.311  Sum_probs=55.8

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...++.++|.+       ++.++++++++.+|++.|.+++++.+||+  |++|+++|+||.+|+++.+..
T Consensus        83 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           83 NGKLVGDLMTP-------APLVVEEKTNLEDAAKILLETKYRRLPVV--DSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             -CCBHHHHSEE-------SCCCEESSSBHHHHHHHHHHSSCCEEEEE--CTTSBEEEEEEHHHHHHHHHC
T ss_pred             ccccHHHhcCC-------CceEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCcEEEEEEHHHHHHHHHh
Confidence            35789999998       78999999999999999999999999999  778999999999999998753

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.02  E-value=9.8e-10  Score=74.21  Aligned_cols=59  Identities=14%  Similarity=0.289  Sum_probs=52.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..+++++|.+        +.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.++.
T Consensus        68 ~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~pVv--d~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           68 ALDIRSLVRP--------AVFIPEVKRLNVLLREFRASRNHLAIVI--DEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             TSCGGGGCBC--------CCEEETTCBHHHHHHHHHTSSCCEEEEE--CC-CCEEEEEEHHHHHHHHHH
T ss_pred             CcCHHHHhCC--------CeEeCCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHhC
Confidence            4679999955        7899999999999999999999999999  778999999999999998753

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.01  E-value=9.3e-10  Score=77.62  Aligned_cols=61  Identities=20%  Similarity=0.294  Sum_probs=56.5

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++++.+||+  |++|+++|+||.+|+++++..
T Consensus        96 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           96 YGKVVGDLMTP-------SPLVVRDSTNLEDAARLLLETKFRRLPVV--DADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             TTCBHHHHSEE-------SCCCEETTSBHHHHHHHHTTSTTCEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             ccccHHHHhCC-------CceEeCCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence            45789999998       88999999999999999999999999999  778999999999999998764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.00  E-value=1.2e-09  Score=77.48  Aligned_cols=59  Identities=12%  Similarity=0.219  Sum_probs=54.7

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..+++++| +       ++.++++++++.+|++.|.+++++.+||+  |++|+++|+||..|++++++.
T Consensus       106 ~~~v~~im-~-------~~~~v~~~~~l~~a~~~m~~~~~~~~pVv--d~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          106 RLELVDLV-K-------NCNFVPNSLSGMELLEHFRTTGSQMVFVV--DEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             CCCGGGGC-B-------CCEEEETTCCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHT
T ss_pred             cccHHHHh-c-------CCeEeCCCCCHHHHHHHHHHcCCeEEEEE--eCCCCEEEEeeHHHHHHHHhC
Confidence            56899999 6       79999999999999999999999999999  778999999999999998863

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.00  E-value=1.1e-09  Score=76.00  Aligned_cols=59  Identities=25%  Similarity=0.396  Sum_probs=54.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..+++++| +       ++.++.+++++.+|++.|.+++++.+||+  |++|+++|+||..|+++.+..
T Consensus        85 ~~~v~~~m-~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           85 KAKISTIM-R-------DIVSVPENMKVPDVMEEMSAHRVPMAIVI--DEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             TSBGGGTC-B-------CCEEEETTSBHHHHHHHHHHTTCSCEEEE--CTTSCEEEEECHHHHHHHHHC
T ss_pred             CCcHHHHh-C-------CCeEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCCEEEEeeHHHHHHHHhc
Confidence            56899999 6       79999999999999999999999999999  778999999999999998863

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.99  E-value=9.2e-10  Score=73.06  Aligned_cols=57  Identities=26%  Similarity=0.406  Sum_probs=53.3

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      .+++++|.+       ++.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++++
T Consensus        62 ~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           62 KTIEEIMTR-------NVITAHEDEPVDHVAIKMSKYNISGVPVV--DDYRRVVGIVTSEDISRLF  118 (122)
T ss_dssp             CBGGGTSBS-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHH
T ss_pred             cCHHHHhcC-------CCeEECCCCCHHHHHHHHHHhCCCeEEEE--CCCCCEEEEEeHHHHHHHh
Confidence            479999998       79999999999999999999999999999  7789999999999999876

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.98  E-value=9.8e-10  Score=81.91  Aligned_cols=60  Identities=10%  Similarity=0.124  Sum_probs=55.5

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..+|+|+|++       ++.++.+++++.+|++.|.+++++++||+  |++|+++|++|..|+++++..
T Consensus         6 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A            6 KLKVEDLEMD-------KIAPLAPEVSLKMAWNIMRDKNLKSIPVA--DGNNHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             CCBGGGSCCB-------CCCCBCTTCBHHHHHHHHHHTTCSEEEEE--CTTCBEEEEEEHHHHHHHHHC
T ss_pred             cCcHHHhcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHH
Confidence            4689999998       89999999999999999999999999999  778999999999999988753

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.96  E-value=1.4e-09  Score=72.37  Aligned_cols=59  Identities=19%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|.+       ++.++++++++.+|++.|.+++.+.+||+  |+ |+++|+||..|+++++.
T Consensus        63 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           63 AEVKVWEVMER-------DLVTISPRATIKEAAEKMVKNVVWRLLVE--ED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             TTSBHHHHCBC-------GGGEECTTSCHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHHHC
T ss_pred             cccCHHHHcCC-------CCeEECCCCCHHHHHHHHHhcCCcEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence            46789999998       79999999999999999999999999999  55 99999999999998763

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.95  E-value=1e-09  Score=74.83  Aligned_cols=59  Identities=19%  Similarity=0.357  Sum_probs=53.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|++        +.++.+++++.+|++.|.+++++.+||+  |++|+++|+||.+|+++.+.
T Consensus        68 ~~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~~Vv--d~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           68 DSDDVKKLLRP--------ATFVPESKRLNVLLREFRANHNHMAIVI--DEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGCCGGGTCBC--------CCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHTTC-
T ss_pred             CCcCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEEHHHHHHHHh
Confidence            35689999965        7899999999999999999999999999  78899999999999988764

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.95  E-value=1.2e-09  Score=84.01  Aligned_cols=73  Identities=22%  Similarity=0.403  Sum_probs=63.3

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc-----CCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR  124 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~  124 (139)
                      .+...+++++|++       +++++.+++|+.+|++.|.++     +++++||+  |++++++|+||.+|++++      
T Consensus       133 ~~~~~~v~~iM~~-------~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVv--d~~~~lvGivt~~dll~~------  197 (286)
T 2oux_A          133 HYEDETAGAIMTT-------EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIVN------  197 (286)
T ss_dssp             TSCTTBHHHHCBS-------CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTTS------
T ss_pred             cCChHHHHHhCCC-------CceEECCCCcHHHHHHHHHHcccCccceeEEEEE--cCCCeEEEEEEHHHHHcC------
Confidence            4567899999998       899999999999999999987     88889999  778999999999999653      


Q ss_pred             CCccCccccccccC
Q 032532          125 SSKSTKVGDIMTEE  138 (139)
Q Consensus       125 ~~~~~~v~~im~~~  138 (139)
                       ..+.++.++|.++
T Consensus       198 -~~~~~v~~im~~~  210 (286)
T 2oux_A          198 -DDDTLIADILNER  210 (286)
T ss_dssp             -CTTSBHHHHSBSC
T ss_pred             -CCCCcHHHHcCCC
Confidence             1467889999754

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.95  E-value=6.4e-10  Score=74.85  Aligned_cols=58  Identities=10%  Similarity=0.224  Sum_probs=54.1

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      .+++++|.+       ++.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++++.
T Consensus        68 ~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           68 EKLGEELLE-------TVRSYRPGEQLFDNLISVAAAKCSVVPLA--DEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCCGGGCB-------CCCCBCTTSBGGGSHHHHHHCSSSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             CcHHHHccC-------CCcEECCCCCHHHHHHHHHhCCCcEEEEE--CCCCCEEEEEEHHHHHHHHH
Confidence            579999998       78999999999999999999999999999  78899999999999998763

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.95  E-value=1.6e-09  Score=72.96  Aligned_cols=60  Identities=30%  Similarity=0.377  Sum_probs=55.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.++|.+       ++.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.+..
T Consensus        66 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           66 ETKAEEFMTA-------SLITIREDSPITGALALMRQFNIRHLPVV--DDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             TCBGGGTSEE-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHH
T ss_pred             ccCHHHHcCC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEEHHHHHHHHHH
Confidence            4689999998       78999999999999999999999999999  778999999999999988754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.94  E-value=7e-10  Score=77.94  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++.++|.+       ++.++.+++++.+|++.|.+++++.+||+  |+ |+++|+||..|+++++.
T Consensus        91 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           91 LQQSVSVAMTK-------NVVRCQHNSTTDQLMEIMTGGRFRHVPVE--EN-GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GTSBGGGTSBS-------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHHTT
T ss_pred             ccCCHHHHhcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence            45789999998       79999999999999999999999999999  56 99999999999998864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.94  E-value=9.5e-10  Score=77.32  Aligned_cols=59  Identities=22%  Similarity=0.317  Sum_probs=53.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...++.++|++       ++.++++++++.+|++.|.++++  +||+  |++|+++|+||.+|+++++..
T Consensus        84 ~~~~v~~im~~-------~~~~v~~~~~l~~~~~~m~~~~~--lpVV--d~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           84 ADTDIVHMTKT-------DVAVVSPDFTITEVLHKLVDESF--LPVV--DAEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             TTSBGGGTCBC-------SCCCBCTTCCHHHHHHHTTTSSE--EEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             cccCHHHhhcC-------CceecccccHHHHHHHHHHHcCC--eEEE--ecCCEEEEEEEHHHHHHHHHH
Confidence            35789999998       89999999999999999998764  9999  789999999999999998743

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.94  E-value=2e-09  Score=79.07  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=56.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...+++++|++       ++.++++++++.+|++.|.++++..+||+  |++|+++|+||..|+++.+..
T Consensus       114 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVV--D~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          114 PHEPLISLLSE-------DSRALTANTTLLDAAEAIEHSREIELPVI--DDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             TTSBGGGGCCS-------SCCCEETTSCHHHHHHHHHTSSCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             CcchHHHHhcC-------CCeEECCCCCHHHHHHHHHhcCCCEEEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence            45789999998       79999999999999999999999999999  788999999999999988754

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.93  E-value=2.9e-09  Score=72.03  Aligned_cols=60  Identities=28%  Similarity=0.471  Sum_probs=54.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcC-----CCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~-----~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|.+       ++.++++++++.+|++.|.+++     .+.+||+  |++|+++|+||..|+++.+.
T Consensus        71 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           71 LETTIGDVMTK-------DVITIHEDASILEAIKKMDISGKKEEIINQLPVV--DKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             SSCBHHHHSCS-------SCCCEETTSBHHHHHHHHTCC-----CCCEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcCHHHHhCC-------CcEEECCCCCHHHHHHHHHhcCCccccccEEEEE--CCCCeEEEEEEHHHHHHHHH
Confidence            45789999998       7899999999999999999999     9999999  67899999999999998764

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.92  E-value=5.3e-09  Score=71.03  Aligned_cols=66  Identities=20%  Similarity=0.357  Sum_probs=53.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.++|.+.... ..++.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++.+..
T Consensus        76 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           76 SLSVGEALMRRSDD-FEGVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             CSBHHHHHHHCC-------CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             CccHHHHHhcCccc-cCCCeEECCCCcHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEHHHHHHHHHh
Confidence            56899999862000 0037899999999999999999999999999  778999999999999998754

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.92  E-value=1.2e-09  Score=80.29  Aligned_cols=70  Identities=13%  Similarity=0.183  Sum_probs=61.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      ..+++++|.+       ++.++.+++|+.+|++.|.+++++++||+  |++++++|+||.+|+++..       .+.++.
T Consensus        12 ~~~~~~~~~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~l~Givt~~dl~~~~-------~~~~v~   75 (213)
T 1vr9_A           12 HMKVKKWVTQ-------DFPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLDLD-------LDSSVF   75 (213)
T ss_dssp             -CBGGGGCBS-------CSCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTTSC-------TTSBSG
T ss_pred             ccCHHHhhcC-------CCeEECCCCcHHHHHHHHHHCCCCEEEEE--cCCCEEEEEEEHHHHHhhc-------CCCcHH
Confidence            3679999999       89999999999999999999999999999  6789999999999996532       256789


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|+++
T Consensus        76 ~im~~~   81 (213)
T 1vr9_A           76 NKVSLP   81 (213)
T ss_dssp             GGCBCT
T ss_pred             HHccCC
Confidence            999764

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.91  E-value=1.8e-09  Score=73.07  Aligned_cols=59  Identities=20%  Similarity=0.352  Sum_probs=54.5

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++.++|.+       ++.++++++++.+|++.|.+++.+.+||+  | +|+++|+||..|+++++.
T Consensus        72 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           72 KDTQVKEIMTR-------QVAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGSBGGGTSBC-------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCCHHHhccC-------CCeEECCCCcHHHHHHHHHHhCCCEEEEE--e-CCEEEEEEEHHHHHHHHH
Confidence            45789999998       79999999999999999999999999999  5 689999999999998774

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.90  E-value=1.4e-09  Score=82.76  Aligned_cols=74  Identities=24%  Similarity=0.300  Sum_probs=63.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      ..+++++|++       ++.++.+++++.+|++.|.+++++++||+  |++++++|++|.+|+++.+. ...  ...+++
T Consensus        92 ~~~v~~im~~-------~~~~v~~~~~~~~a~~~m~~~~~~~lpVv--d~~~~lvGivt~~dl~~~~~-~~~--~~~~v~  159 (296)
T 3ddj_A           92 TTPIIDYMTP-------NPVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLLYK-DLD--EIFPVK  159 (296)
T ss_dssp             TSBGGGTSEE-------SCCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGGGG-GSC--CCCBHH
T ss_pred             cccHHHhccC-------CCEEEcCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEeHHHHHHhhh-ccc--ccccHH
Confidence            5689999998       79999999999999999999999999999  77899999999999987652 222  356889


Q ss_pred             cccccC
Q 032532          133 DIMTEE  138 (139)
Q Consensus       133 ~im~~~  138 (139)
                      ++|+++
T Consensus       160 ~~m~~~  165 (296)
T 3ddj_A          160 VFMSTK  165 (296)
T ss_dssp             HHSBCS
T ss_pred             HhhcCC
Confidence            998754

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.90  E-value=3.9e-09  Score=72.61  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=53.6

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...++.++|.+       ++.++.+++++.+|++.|.++++  +||+  |++|+++|+||..|+++.+..
T Consensus        85 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~~~~~~~--l~Vv--d~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           85 EEMKVEQVMKQ-------DIPVLKLEDSFAKALEMTIDHPF--ICAV--NEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GGCBGGGTCBS-------SCCEEETTCBHHHHHHHHHHCSE--EEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             hcCCHHHHhcC-------CCceeCCCCCHHHHHHHHHhCCE--EEEE--CCCCcEEEEEEHHHHHHHHHH
Confidence            35789999998       89999999999999999999987  9999  778999999999999998754

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.89  E-value=9.4e-10  Score=84.62  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=64.3

Q ss_pred             ccCcHHHH---hhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCcc
Q 032532           52 ESTTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKS  128 (139)
Q Consensus        52 ~~~~v~dv---m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~  128 (139)
                      ...+++++   |.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+........+
T Consensus       185 ~~~~v~~~~~~m~~-------~~~~v~~~~~~~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~  255 (323)
T 3t4n_C          185 LKIPIGDLNIITQD-------NMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGGIYNDLS  255 (323)
T ss_dssp             CCSBGGGTTCSBCT-------TCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETTHHHHHHHTTHHHHTT
T ss_pred             hhCcHHHcCCCCCC-------CcEEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHHHHHHhhchhhhcc
Confidence            34689999   877       79999999999999999999999999999  7789999999999999876432111235


Q ss_pred             Ccccccccc
Q 032532          129 TKVGDIMTE  137 (139)
Q Consensus       129 ~~v~~im~~  137 (139)
                      .++.++|++
T Consensus       256 ~~v~~~m~~  264 (323)
T 3t4n_C          256 LSVGEALMR  264 (323)
T ss_dssp             SBHHHHGGG
T ss_pred             CCHHHHHhh
Confidence            688899876

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.89  E-value=4.6e-09  Score=73.43  Aligned_cols=59  Identities=22%  Similarity=0.390  Sum_probs=54.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++.++|.+       ++.++.+++++.+|++.|.+++.+.+||+  |+ |+++|+||..||++.+.
T Consensus        76 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           76 FETPLFEVMHT-------DVTSVAPQAGLKESAIYMQKHKIGCLPVV--AK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             CCCBHHHHSCS-------CEEEBCTTSBHHHHHHHHHHTTCSCEEEE--ET-TEEEEEECHHHHHHHHH
T ss_pred             cccCHHHHhcC-------CCeEECCCCCHHHHHHHHHHhCCCEEEEE--EC-CEEEEEEEHHHHHHHHH
Confidence            45789999998       89999999999999999999999999999  45 99999999999998754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.89  E-value=2.5e-09  Score=72.94  Aligned_cols=57  Identities=25%  Similarity=0.298  Sum_probs=52.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|.+       ++.++.++ ++.+|++.|.+++.+.+||+  |++|+++|+||..|+++++
T Consensus        70 ~~~v~~~m~~-------~~~~v~~~-~l~~a~~~m~~~~~~~l~Vv--d~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           70 DGPAMPIANS-------PITVLDTD-PVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             TSBSGGGCBC-------CCEEETTS-BHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHSCH
T ss_pred             CCCHHHHcCC-------CCeEEcCC-CHHHHHHHHHHcCCeEEEEE--cCCCcEEEEEEHHHHHHHH
Confidence            5689999998       89999999 99999999999999999999  7789999999999997654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.88  E-value=2.7e-09  Score=71.88  Aligned_cols=58  Identities=22%  Similarity=0.476  Sum_probs=53.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...+++++|.+       ++.++++++++.+|++.|.+++.+.+||+  |+ |+++|+||..|+++.+
T Consensus        72 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           72 NTATAGELARD-------SIYYVDANASIQEMLNVMEEHQVRRVPVI--SE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             TTSBHHHHHTT-------CCCCEETTCCHHHHHHHHHHHTCSEEEEE--ET-TEEEEEEEHHHHHHTC
T ss_pred             cccCHHHHhcC-------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--EC-CEEEEEEEHHHHHHHH
Confidence            35789999998       79999999999999999999999999999  45 8999999999998764

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.87  E-value=5.8e-09  Score=79.53  Aligned_cols=72  Identities=18%  Similarity=0.362  Sum_probs=62.3

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc-----CCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCC
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS  125 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~  125 (139)
                      +...+++++|++       ++.++.+++|+.+|++.|.++     ++.++||+  |++++++|+||.+|++.+       
T Consensus       132 ~~~~~v~~iM~~-------~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vv--d~~~~lvGivt~~dll~~-------  195 (278)
T 2yvy_A          132 YEEDEAGGLMTP-------EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA-------  195 (278)
T ss_dssp             SCTTBGGGTCBS-------CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEE--CTTCBEEEEEEHHHHHHS-------
T ss_pred             CCcchHHhhcCC-------CceEECCCCcHHHHHHHHHHccCCccceeEEEEE--CCCCCEEEEEEHHHHhcC-------
Confidence            456789999998       899999999999999999987     78999999  778999999999999753       


Q ss_pred             CccCccccccccC
Q 032532          126 SKSTKVGDIMTEE  138 (139)
Q Consensus       126 ~~~~~v~~im~~~  138 (139)
                      ....++.++|.++
T Consensus       196 ~~~~~v~~im~~~  208 (278)
T 2yvy_A          196 DPRTRVAEIMNPK  208 (278)
T ss_dssp             CTTCBSTTTSBSS
T ss_pred             CCCCcHHHHhCCC
Confidence            1467899999654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.87  E-value=1.9e-09  Score=80.31  Aligned_cols=57  Identities=21%  Similarity=0.302  Sum_probs=49.3

Q ss_pred             cCcHHHHhh-hcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        53 ~~~v~dvm~-~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ..+++++|+ +       ++.++++++++.+|++.|.+++++.+||+  |++|+++|+||.+|++++
T Consensus       184 ~~~v~~im~~~-------~~~~~~~~~~~~~~~~~m~~~~~~~~pVv--d~~~~~~Giit~~dll~~  241 (245)
T 3l2b_A          184 SLPVDYVMTKD-------NLVAVSTDDLVEDVKVTMSETRYSNYPVI--DENNKVVGSIARFHLIST  241 (245)
T ss_dssp             GSBHHHHSBCT-------TCCCEETTSBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEECC-----
T ss_pred             CCceeeEecCC-------ccEEECCCCcHHHHHHHHHhcCCceEEEE--cCCCeEEEEEEHHHhhch
Confidence            578999999 6       79999999999999999999999999999  778999999999999875

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.87  E-value=7.1e-09  Score=72.07  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=54.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++.++|.+        +.++++++++.+|++.|.+++++.+||+  |++|+++|+||..|+++.+.
T Consensus        94 ~~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           94 IAKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVV--DEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             SSCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             cCCcHHHHcCC--------CeEECCCCCHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEEHHHHHHHHH
Confidence            45789999987        6889999999999999999999999999  67899999999999998875

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.85  E-value=9.5e-09  Score=71.30  Aligned_cols=65  Identities=17%  Similarity=0.148  Sum_probs=53.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.++|.+.... .+.+.++.+++++.+|++.|.+++.+++||+  | +|+++|+||..|+++++..
T Consensus        83 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           83 QQCLQDILARGCPT-EPVTLTLFSETTLHQAQNLFKLLNLQSLFVT--S-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             CCBHHHHHHTTCCC-BCCCCCEETTCBHHHHHHHHHHTTCSEEEEE--E-TTEEEEEEEHHHHHHHHHH
T ss_pred             cchhhhhhcccccc-cCCceEECCCCcHHHHHHHHHHhCCCEEEEE--E-CCEEEEEEEHHHHHHHHHh
Confidence            46799999871000 0017889999999999999999999999999  5 7899999999999988754

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.83  E-value=2.1e-09  Score=80.78  Aligned_cols=59  Identities=19%  Similarity=0.331  Sum_probs=54.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...+++++|++       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++++
T Consensus       219 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~lvGiit~~Dil~~~  277 (282)
T 2yzq_A          219 PNKPVAEIMTR-------DVIVATPHMTVHEVALKMAKYSIEQLPVI--RGEGDLIGLIRDFDLLKVL  277 (282)
T ss_dssp             CCCBGGGTCBS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--ETTTEEEEEEEHHHHGGGG
T ss_pred             ccCCHHHhcCC-------CCceeCCCCCHHHHHHHHHHcCcceeEEE--CCCCCEEEEEeHHHHHHHH
Confidence            35789999998       89999999999999999999999999999  6678999999999998765

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.83  E-value=5.9e-09  Score=76.61  Aligned_cols=60  Identities=18%  Similarity=0.327  Sum_probs=55.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.++|++       ++.++.+++++.+|++.|.+++++.+||+  |++|+++|+||.+|+++.+..
T Consensus        71 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           71 DSSVFNKVSL-------PDFFVHEEDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             TSBSGGGCBC-------TTCCEETTSBHHHHHHHHHHCCCSEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCcHHHHccC-------CCEEECCCCcHHHHHHHHHHhCCCEEEEE--cCCCEEEEEEEHHHHHHHHHH
Confidence            4579999998       79999999999999999999999999999  677999999999999987653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.83  E-value=5.9e-09  Score=70.59  Aligned_cols=59  Identities=15%  Similarity=0.333  Sum_probs=54.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++.++|.+       ++.++++++++.+|++.|.+++++++ |+  |++|+++|+||..|+++.+.
T Consensus        70 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~m~~~~~~~l-Vv--d~~g~~~Giit~~dil~~~~  128 (138)
T 2yzi_A           70 YDIPVERIMTR-------NLITANVNTPLGEVLRKMAEHRIKHI-LI--EEEGKIVGIFTLSDLLEASR  128 (138)
T ss_dssp             TTSBGGGTCBC-------SCCEEETTSBHHHHHHHHHHHTCSEE-EE--EETTEEEEEEEHHHHHHHHH
T ss_pred             ccCCHHHHhhC-------CCeEECCCCcHHHHHHHHHhcCCCEE-EE--CCCCCEEEEEEHHHHHHHHH
Confidence            35689999998       89999999999999999999999999 99  56899999999999998874

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.82  E-value=1e-08  Score=70.88  Aligned_cols=60  Identities=23%  Similarity=0.388  Sum_probs=54.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ...++.++|.+       ++.++++++++.+|++.|.++++  +||+  |++|+++|+||..|+++.+...
T Consensus        81 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~--l~Vv--d~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           81 ETMKVEEVMNR-------NIPRLRLDDSLMKAVGLIVNHPF--VCVE--NDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             GTCBGGGTCBC-------CCCEEETTSBHHHHHHHHHHSSE--EEEE--CSSSSEEEEEEHHHHHHHHHHT
T ss_pred             cCCcHHHHhCC-------CCceecCCCcHHHHHHHHhhCCE--EEEE--cCCCeEEEEEEHHHHHHHHHHH
Confidence            35689999998       89999999999999999999987  9999  6789999999999999987643

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.81  E-value=8.7e-09  Score=71.81  Aligned_cols=55  Identities=16%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYL  116 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll  116 (139)
                      ...+++++|++        +.++++++++.+|++.|.+++.+.+||+  |++|+++|+||..|++
T Consensus       101 ~~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~~~Vv--d~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP--------AVFVPEGKSLTALLKEFREQRNHMAIVI--DEYGGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC--------CCEEETTSBHHHHHHHHHHTTCCEEEEE--CTTSSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC--------CEEECCCCCHHHHHHHHHhcCCeEEEEE--CCCCCEEEEEEHHHhc
Confidence            35689999965        7899999999999999999999999999  7889999999999984

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.81  E-value=7.5e-09  Score=77.78  Aligned_cols=76  Identities=20%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH-HHHHcCCCCccCcc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR-KIIVQGRSSKSTKV  131 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~-~~~~~~~~~~~~~v  131 (139)
                      ..+++++|.+       ++.++.+++++.+|++.|.+++.+.+||+  |++|+++|++|.+|+++ .+. .+......++
T Consensus        59 ~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~~~Vv--d~~~~~~Giit~~di~~~~~~-~~~~~~~~~v  128 (282)
T 2yzq_A           59 EEQLAMLVKR-------DVPVVKENDTLKKAAKLMLEYDYRRVVVV--DSKGKPVGILTVGDIIRRYFA-KSEKYKGVEI  128 (282)
T ss_dssp             -----CCCBS-------CCCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTT-TCSGGGGCBS
T ss_pred             cCCHHHHcCC-------CCcEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCEEEEEEEHHHHHHHHHh-ccCCcccCcH
Confidence            4679999988       78999999999999999999999999999  67799999999999987 542 2212235678


Q ss_pred             ccccccC
Q 032532          132 GDIMTEE  138 (139)
Q Consensus       132 ~~im~~~  138 (139)
                      +++|+++
T Consensus       129 ~~~m~~~  135 (282)
T 2yzq_A          129 EPYYQRY  135 (282)
T ss_dssp             TTTSBSC
T ss_pred             HHHhCCC
Confidence            8888654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.80  E-value=5e-09  Score=78.43  Aligned_cols=58  Identities=29%  Similarity=0.479  Sum_probs=53.5

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|++       ++.++++++++.+|++.|.+++++++||+  |++|+++|+||.+|+++++
T Consensus       222 ~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          222 NVRMEEIMKR-------DVITAKEGDKLKKIAEIMVTNDIGALPVV--DENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             HCBHHHHSBS-------SCCCBCTTCBHHHHHHHHHHHTCCEEEEE--CTTCBEEEEEEHHHHGGGG
T ss_pred             CCcHHHHhcC-------CCEEECCCCCHHHHHHHHHHCCCCEEEEE--CCCCeEEEEEeHHHHHHhh
Confidence            4689999998       89999999999999999999999999999  7788999999999997653

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.80  E-value=7.1e-09  Score=73.43  Aligned_cols=61  Identities=21%  Similarity=0.223  Sum_probs=55.5

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ...++.++|.+       ++.++.+++++.+|++.|.+++.+.+||+  | +|+++|+||..|+++++...
T Consensus       106 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          106 PTLKLRNILDL-------SPFTVTDLTPMEIVVDIFRKLGLRQCLVT--H-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CCEECGGGEES-------SCCEEETTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHHHH
T ss_pred             cCccHHHhhCc-------CCeEeCCCCCHHHHHHHHHhCCCcEEEEE--E-CCEEEEEEEHHHHHHHHHHh
Confidence            35689999988       79999999999999999999999999999  5 89999999999999987654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.80  E-value=4.9e-09  Score=72.28  Aligned_cols=56  Identities=18%  Similarity=0.364  Sum_probs=50.9

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++++.+||+  |++ +++|+||..|+++
T Consensus        93 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           93 RDASIADVMTR-------GGIRIRPGTLAVDALNLMQSRHITCVLVA--DGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             TTCBHHHHSEE-------SCCEECTTCBHHHHHHHHHHHTCSEEEEE--ETT-EEEEEEEHHHHTC
T ss_pred             ccCcHHHHcCC-------CCeEECCCCCHHHHHHHHHHcCCCEEEEe--cCC-EEEEEEEHHHhhc
Confidence            45789999998       79999999999999999999999999999  444 9999999999864

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.79  E-value=1.1e-08  Score=77.62  Aligned_cols=60  Identities=23%  Similarity=0.410  Sum_probs=55.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.++|.+       ++.++.+++++.+|++.|.+++++.+||+  |++|+++|+||.+||++++..
T Consensus       226 ~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d~~g~~~Giit~~Dil~~l~~  285 (296)
T 3ddj_A          226 GKVVKDVMVT-------NLVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDLLIALHH  285 (296)
T ss_dssp             TCBHHHHSBC-------CCCBCCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHH
T ss_pred             CcCHHHHhCC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEcHHHHHHHHHH
Confidence            5689999998       89999999999999999999999999999  778999999999999998753

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.78  E-value=1.4e-08  Score=77.91  Aligned_cols=61  Identities=23%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...+++++|.+       ++.++++++++.+|++.|.++++.++||+  |++|+++|+||..|+++.+..
T Consensus       199 ~~~~v~~im~~-------~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 DDTLIADILNE-------RVISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             TTSBHHHHSBS-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHcCC-------CCeeecCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHHHHH
Confidence            45789999998       79999999999999999999999999999  788999999999999987653

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.78  E-value=1e-08  Score=71.47  Aligned_cols=63  Identities=21%  Similarity=0.361  Sum_probs=54.8

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCC---ceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK---SVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~---~lvGivt~~dll~~~~~  121 (139)
                      ...++.++|.+..     ++.++.+++++.+|++.|.+++++.+||+  |++|   +++|+||..||++++..
T Consensus        79 ~~~~v~~~m~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           79 TSVPVHIIMTRMP-----NITVCRREDYVMDIAKHLIEKQIDALPVI--KDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TTCBGGGTSEETT-----SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--EECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             cCcCHHHHHcCCC-----CcEEECCCCCHHHHHHHHHHcCCcEEEEE--eCCCcceeEEEEEEHHHHHHHHHH
Confidence            4578999998621     47889999999999999999999999999  5667   99999999999988754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.77  E-value=1.5e-08  Score=70.45  Aligned_cols=59  Identities=14%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...++.++|.+       ++.++.+++++.+|++.|.++++  +||+  |++|+++|+||..|+++.+..
T Consensus        84 ~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~--lpVv--d~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           84 DQITVEEVMLT-------DIPRLHINDPIMKGFGMVINNGF--VCVE--NDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             TTSBHHHHSBC-------SCCEEETTSBHHHHHHHTTTCSE--EEEE--CTTCBEEEEEEHHHHHHHHHH
T ss_pred             ccCCHHHhcCC-------CCceEcCCCCHHHHHHHHHhCCE--EEEE--eCCCeEEEEEEHHHHHHHHHH
Confidence            45789999998       79999999999999999999887  9999  678999999999999988754

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.77  E-value=6.4e-09  Score=74.29  Aligned_cols=59  Identities=20%  Similarity=0.288  Sum_probs=53.8

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...+++++|.+       ++.++.+++++.+|++.|.+++.+.+||+  |++|+++|+||..|+++++
T Consensus        73 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           73 DEVPIRLVMRK-------PIPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             GGSBGGGTSBS-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTTS
T ss_pred             ccCCHHHHhCC-------CCcEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence            35689999998       79999999999999999999999999999  6779999999999998754

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.74  E-value=6.1e-08  Score=74.40  Aligned_cols=66  Identities=20%  Similarity=0.353  Sum_probs=56.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..+++++|++.. ...+++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++++..
T Consensus       255 ~~~v~~~m~~~~-~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          255 SLSVGEALMRRS-DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             TSBHHHHGGGSC-TTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             cCCHHHHHhhcc-ccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEE--CCCCcEEEEEEHHHHHHHHHh
Confidence            468999998721 001147999999999999999999999999999  778999999999999998864

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.72  E-value=1.2e-08  Score=77.82  Aligned_cols=60  Identities=23%  Similarity=0.366  Sum_probs=54.3

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|.+       ++.++++++++.+|++.|.++++..+||+  |++|+++|+||..|+++.+.
T Consensus       197 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          197 PRTRVAEIMNP-------KVVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             TTCBSTTTSBS-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHC-
T ss_pred             CCCcHHHHhCC-------CCeEEeCCCCHHHHHHHHHhcCCCEEEEE--eCCCeEEEEEEHHHHHHHHH
Confidence            35678999987       79999999999999999999999999999  77899999999999998764

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.72  E-value=3.4e-08  Score=70.40  Aligned_cols=50  Identities=12%  Similarity=0.167  Sum_probs=47.1

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ++.++++++++.+|++.|.+++++.+||+  |++|+++||||..|+++.+..
T Consensus       108 ~~~~v~~~~~l~~al~~m~~~~~~~~~Vv--de~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          108 DPIIVHESIGILRLMDTLKRSRGQLVLVA--DEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             CCCEECGGGCHHHHHHHHHHSTTCCEEEE--CTTCCEEEEECHHHHHHHHHC
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCeEEEEE--eCCCCEEEEEeHHHHHHHHhC
Confidence            68999999999999999999999999999  788999999999999998863

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.70  E-value=4.7e-09  Score=88.82  Aligned_cols=61  Identities=11%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHH-HcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT-QHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~-~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...+|+|+|++..     ++.++++++|+.|+.+.|. +++++.+||+  |++++++|+||++|+++.+
T Consensus       451 ~~~~V~diM~p~~-----~v~~v~~~~t~~e~~~~~~~~~~~~~~PVv--d~~~~lvGiVt~~DL~~~l  512 (632)
T 3org_A          451 PEMTAREIMHPIE-----GEPHLFPDSEPQHIKGILEKFPNRLVFPVI--DANGYLLGAISRKEIVDRL  512 (632)
T ss_dssp             TTSBHHHHCBCTT-----TSCCBCSSSCHHHHHHHHHHSTTCCEECBB--CTTCBBCCEESHHHHTTTT
T ss_pred             ccCcHHHHhhcCC-----CceEecCCCcHHHHHHHHHhcCCcceEEEE--ecCCeEEEEEEHHHHHHHH
Confidence            4689999999211     7899999999999999999 7999999999  6789999999999998764

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.70  E-value=6.4e-08  Score=74.59  Aligned_cols=67  Identities=21%  Similarity=0.295  Sum_probs=55.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ..++.++|.+.... +.++.++.+++++.+|++.|.+++++.+||+  |++|+++|+||..|+++++...
T Consensus       250 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~l~Giit~~dil~~~~~~  316 (334)
T 2qrd_G          250 DLSVGEALLKRPAN-FDGVHTCRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLADILNYIIYD  316 (334)
T ss_dssp             GSBHHHHHTTCCTT-CCCCCEECTTCBHHHHHHHHHHSCCCEEEEE--CTTCBEEEEEEHHHHHHHHHSC
T ss_pred             cCcHHHHHhccccc-CCCCEEECCCCcHHHHHHHHHHcCCCEEEEE--CCCCeEEEEEeHHHHHHHHHhc
Confidence            46899999841000 0168999999999999999999999999999  7789999999999999987643

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.70  E-value=1.8e-08  Score=77.79  Aligned_cols=76  Identities=16%  Similarity=0.292  Sum_probs=62.1

Q ss_pred             cCcHHHH---hhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           53 STTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        53 ~~~v~dv---m~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      ..+++++   |.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++.+..........
T Consensus       181 ~~~v~~l~~~m~~-------~~~~v~~~~~~~~~~~~m~~~~~~~~~Vv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~  251 (334)
T 2qrd_G          181 RVPLNQMTIGTWS-------NLATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDL  251 (334)
T ss_dssp             CCBGGGSSCSBCS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEETHHHHHHHTTSCGGGGGS
T ss_pred             hCcHHHhCCcccC-------CceEECCCCcHHHHHHHHHHcCCcEEEEE--cCCCcEEEEEEHHHHHHHhhccccccccC
Confidence            3678884   776       78999999999999999999999999999  67899999999999998764321122467


Q ss_pred             cccccccc
Q 032532          130 KVGDIMTE  137 (139)
Q Consensus       130 ~v~~im~~  137 (139)
                      ++.++|++
T Consensus       252 ~v~~~m~~  259 (334)
T 2qrd_G          252 SVGEALLK  259 (334)
T ss_dssp             BHHHHHTT
T ss_pred             cHHHHHhc
Confidence            78888873

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.67  E-value=3e-08  Score=81.31  Aligned_cols=73  Identities=18%  Similarity=0.353  Sum_probs=62.6

Q ss_pred             CCccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHc-----CCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC
Q 032532           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR  124 (139)
Q Consensus        50 ~~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~-----~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~  124 (139)
                      .+...+++++|++       ++.++++++|+.+|++.|.++     +++++||+  |++++++|+||.+|++.+      
T Consensus       151 ~~~~~~v~~iM~~-------~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVv--d~~~~lvGiVt~~Dll~~------  215 (473)
T 2zy9_A          151 RYEEDEAGGLMTP-------EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA------  215 (473)
T ss_dssp             TSCTTBSTTTCBS-------CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEE--CTTSBEEEEEEHHHHHHS------
T ss_pred             cCCCCCHHHhCCC-------CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEE--CCCCcEEEEEEHHHHhcC------
Confidence            4456789999998       899999999999999999986     57899999  678999999999999752      


Q ss_pred             CCccCccccccccC
Q 032532          125 SSKSTKVGDIMTEE  138 (139)
Q Consensus       125 ~~~~~~v~~im~~~  138 (139)
                       ..+.++.++|+++
T Consensus       216 -~~~~~v~dim~~~  228 (473)
T 2zy9_A          216 -DPRTRVAEIMNPK  228 (473)
T ss_dssp             -CTTSBGGGTSBSS
T ss_pred             -CCCCcHHHHhCCC
Confidence             1467899999754

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.59  E-value=1.5e-07  Score=72.48  Aligned_cols=66  Identities=23%  Similarity=0.382  Sum_probs=54.9

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.++|... ..+..++.++.+++++.+|++.|.+++++++||+  |++|+++|+||..|+++++..
T Consensus       258 ~~~v~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv--d~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          258 DVSVTKALQHR-SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             SSBHHHHGGGC-CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHS
T ss_pred             cCcHHHHHhcc-ccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEE--cCCCcEEEEEeHHHHHHHHHh
Confidence            46899999520 0001178999999999999999999999999999  778999999999999998753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.59  E-value=4.6e-08  Score=74.14  Aligned_cols=48  Identities=8%  Similarity=0.050  Sum_probs=45.4

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      .|+++.+++++.++..+|...|++++||+   ++|+++||||++||++++.
T Consensus       198 sP~tv~~~tsL~~v~~LF~~lglr~l~V~---~~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          198 SPFQLVEGTSLQKTHTLFSLLGLDRAYVT---SMGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CSCCBCTTCBHHHHHHHHHHHTCSEEEEE---ETTEEEEEEEHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCeEEEEE---ECCEEEEEEEHHHHHHHHH
Confidence            89999999999999999999999999999   4799999999999999873

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.59  E-value=8.4e-08  Score=78.62  Aligned_cols=61  Identities=23%  Similarity=0.361  Sum_probs=55.8

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...+++++|++       ++.++++++++.+|++.|.+++...+||+  |++|+++|+||.+|+++.+..
T Consensus       217 ~~~~v~dim~~-------~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--De~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          217 PRTRVAEIMNP-------KVVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             TTSBGGGTSBS-------SCCCEESSSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHhCC-------CCeEEeCCCcHHHHHHHHHhcCCcEEEEE--cCCCEEEEEEehHhhHHHHHH
Confidence            45789999988       79999999999999999999999999999  788999999999999987643

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.54  E-value=8.9e-08  Score=73.76  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=53.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC-CceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~-~~lvGivt~~dll~~~~  120 (139)
                      ...+++|+|++..     ++.++++++|+.+|++.|.+++++++||+  +++ ++++|+||.+|++..+.
T Consensus        33 ~~~~v~dim~p~~-----~v~~v~~~~~v~~a~~~~~~~~~~~~pV~--d~~~~~~vGivt~~Dll~~l~   95 (330)
T 2v8q_E           33 KSHRCYDLIPTSS-----KLVVFDTSLQVKKAFFALVTNGVRAAPLW--DSKKQSFVGMLTITDFINILH   95 (330)
T ss_dssp             HHSBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSEEEEE--ETTTTEEEEEEEHHHHHHHHH
T ss_pred             HcCcHhhhccCCC-----cEEEEeCCCcHHHHHHHHHHcCCcEEEEE--eCCCCeEEEEEEHHHHHHHHH
Confidence            3468999994321     78999999999999999999999999999  454 79999999999988654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.47  E-value=1.4e-07  Score=77.87  Aligned_cols=66  Identities=23%  Similarity=0.254  Sum_probs=54.8

Q ss_pred             HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccc
Q 032532           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM  135 (139)
Q Consensus        56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im  135 (139)
                      +.++|.+       ++.++.+++|+.+++++|.+++++.+||+  |++++++|+||.+|++.     ... .+.++.++|
T Consensus        91 ~~~~m~~-------d~v~v~~~~tv~ea~~~m~~~~~s~~PVv--d~~~~lvGiVt~rDL~~-----~~~-~~~~v~diM  155 (496)
T 4fxs_A           91 FEAGVVT-------HPVTVRPEQTIADVMELTHYHGFAGFPVV--TENNELVGIITGRDVRF-----VTD-LTKSVAAVM  155 (496)
T ss_dssp             CCC--CB-------CCCCBCSSSBHHHHHHHHTSSCCCEEEEE--CSSSBEEEEEEHHHHTT-----CCC-TTSBGGGTS
T ss_pred             ccccccc-------CceEECCCCCHHHHHHHHHHcCCcEEEEE--ccCCEEEEEEEHHHHhh-----ccc-CCCcHHHHh
Confidence            3456776       89999999999999999999999999999  67899999999999852     122 467899999


Q ss_pred             c
Q 032532          136 T  136 (139)
Q Consensus       136 ~  136 (139)
                      +
T Consensus       156 ~  156 (496)
T 4fxs_A          156 T  156 (496)
T ss_dssp             E
T ss_pred             c
Confidence            8

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.45  E-value=1.1e-07  Score=78.64  Aligned_cols=73  Identities=27%  Similarity=0.441  Sum_probs=58.9

Q ss_pred             HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC--CCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~--~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      +.++|+.. ..+..++.++.+++|+.+++++|.+++++.+||+  |+  +++++|+||.+|++.     .. ..+.++.+
T Consensus       109 V~~V~~~~-~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVv--d~g~~~~lvGiVt~rDl~~-----~~-~~~~~V~~  179 (511)
T 3usb_A          109 VDKVKRSE-SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVV--NNLDERKLVGIITNRDMRF-----IQ-DYSIKISD  179 (511)
T ss_dssp             HHHHHTSS-SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEE--SCTTTCBEEEEEEHHHHTT-----CC-CSSSBHHH
T ss_pred             HHHhhccc-cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEE--ecCCCCEEEEEEEehHhhh-----hc-cCCCcHHH
Confidence            66666542 2233478999999999999999999999999999  66  799999999999953     12 24678999


Q ss_pred             cccc
Q 032532          134 IMTE  137 (139)
Q Consensus       134 im~~  137 (139)
                      +|++
T Consensus       180 vM~~  183 (511)
T 3usb_A          180 VMTK  183 (511)
T ss_dssp             HCCC
T ss_pred             hccc
Confidence            9985

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.42  E-value=3e-07  Score=75.33  Aligned_cols=68  Identities=19%  Similarity=0.262  Sum_probs=58.7

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecC--CCCceEEEEeHHHHHHHHHHcCCCCccCccc
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG--EQKSVAGIITERDYLRKIIVQGRSSKSTKVG  132 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d--~~~~lvGivt~~dll~~~~~~~~~~~~~~v~  132 (139)
                      .+.++|++       ++.++.+++++.++++.|.+++++.+||+  |  ++++++|+||.+|++..   .  . .+.++.
T Consensus        91 ~~~~im~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~lvGivt~~Dl~~~---~--~-~~~~v~  155 (491)
T 1zfj_A           91 RSENGVII-------DPFFLTPEHKVSEAEELMQRYRISGVPIV--ETLANRKLVGIITNRDMRFI---S--D-YNAPIS  155 (491)
T ss_dssp             HHTTTTSS-------SCCCBCSSSBHHHHHHHHHHTTCSEEEEE--SCTTTCBEEEEEEHHHHHHC---S--C-SSSBTT
T ss_pred             hHHhcCcC-------CCeEECCCCcHHHHHHHHHHcCCCEEEEE--EeCCCCEEEEEEEHHHHhhh---c--c-CCCcHH
Confidence            35778887       89999999999999999999999999999  6  68999999999999753   1  2 467899


Q ss_pred             ccccc
Q 032532          133 DIMTE  137 (139)
Q Consensus       133 ~im~~  137 (139)
                      ++|++
T Consensus       156 ~im~~  160 (491)
T 1zfj_A          156 EHMTS  160 (491)
T ss_dssp             TSCCC
T ss_pred             HHcCC
Confidence            99985

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.36  E-value=1.3e-07  Score=78.34  Aligned_cols=60  Identities=10%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC----CCceEEEEeHHHHHHHHHHc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE----QKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~----~~~lvGivt~~dll~~~~~~  122 (139)
                      ...+|.++|++       ++.++.+++++.+++++|.++++  +||+  |+    +++++||||..||++.+...
T Consensus       449 ~~~~V~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~--~pVV--d~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          449 QSDPAIKALNK-------RVIRLNESEILGKLARVLEVDPS--VLIL--GKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             TTSBGGGGEET-------TCCEEETTSBHHHHHHHHTTCSE--EEEE--EECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             CCCcHHHHhcC-------CCeEECCCCcHHHHHHHHhhCCE--EEEE--eCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            45789999998       89999999999999999987764  7999  44    38999999999999988643

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.35  E-value=2.1e-07  Score=78.69  Aligned_cols=54  Identities=15%  Similarity=0.052  Sum_probs=48.6

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ++.++|++       ++.++++++++.+|++.|.+++.+.+||+   ++|+++||||++|++++
T Consensus       569 ~v~~iMt~-------~pitV~~~~~l~ea~~~M~~~~i~~lpVv---e~G~lvGIVT~~Dll~~  622 (632)
T 3org_A          569 SLVVPCDV-------SPIVVTSYSLVRQLHFLFVMLMPSMIYVT---ERGKLVGIVEREDVAYG  622 (632)
T ss_dssp             --CCSCCC-------CCCEEETTCBHHHHHHHHHHTCCSEEEEE---ETTEEEEEEEGGGTEEC
T ss_pred             ccchhhcC-------CCceecCCCcHHHHHHHHHhcCCCEEEEE---ECCEEEEEEehhhHHHH
Confidence            47889998       89999999999999999999999999999   47899999999999764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.35  E-value=4.7e-08  Score=80.29  Aligned_cols=68  Identities=29%  Similarity=0.379  Sum_probs=1.1

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccc
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~i  134 (139)
                      ++.++|++       ++.++.+++++.+|++.|.+++++.+||+  |++++++|+||.+|+++.   .  . .+.++.++
T Consensus        96 ~~~~iM~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~lvGivt~~Dl~~~---~--~-~~~~v~~i  160 (494)
T 1vrd_A           96 KTENGIIY-------DPITVTPDMTVKEAIDLMAEYKIGGLPVV--DEEGRLVGLLTNRDVRFE---K--N-LSKKIKDL  160 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc-------CCeEECCCCCHHHHHHHHHHcCceEEEEE--cCCCEEEEEEEHHHHHhh---c--C-CCCcHHHH
Confidence            46788888       89999999999999999999999999999  678899999999999752   1  1 35678888


Q ss_pred             ccc
Q 032532          135 MTE  137 (139)
Q Consensus       135 m~~  137 (139)
                      |++
T Consensus       161 m~~  163 (494)
T 1vrd_A          161 MTP  163 (494)
T ss_dssp             ---
T ss_pred             hCC
Confidence            875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.32  E-value=1.2e-06  Score=72.44  Aligned_cols=61  Identities=23%  Similarity=0.308  Sum_probs=55.4

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++.++|++.      ++.++++++++.++++.|.++++..+||+  |++|+++|+||.+|+++.+.
T Consensus       173 ~~~~V~~vM~~~------~~vtv~~~~~l~eal~~m~~~~i~~lpVV--De~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          173 YSIKISDVMTKE------QLITAPVGTTLSEAEKILQKYKIEKLPLV--DNNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             SSSBHHHHCCCC------CCCCEETTCCHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHhcccC------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--eCCCCEeeeccHHHHHHhhh
Confidence            357899999951      58999999999999999999999999999  78999999999999998874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.29  E-value=1.3e-07  Score=78.00  Aligned_cols=59  Identities=20%  Similarity=0.353  Sum_probs=0.0

Q ss_pred             cCcHHHHhhhcCCCCCCC--cEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGS--WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~--~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++.++|++       +  +.++++++++.+|+++|.+++++.+||+  |++++++|+||.+||++.+.
T Consensus       160 ~~~V~diM~~-------~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          160 ETKVSDMMTP-------FSKLVTAHQDTKLSEANKIIWEKKLNALPII--DDDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cCcHHHHhCC-------CCCCEEEcCCCcHHHHHHHHHHcCCCEEEEE--cCCCeEEEEEEecHHHHhhh
Confidence            4679999998       6  9999999999999999999999999999  78899999999999998775

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.21  E-value=1.7e-07  Score=77.78  Aligned_cols=63  Identities=25%  Similarity=0.312  Sum_probs=0.0

Q ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCEEEEEecC-CCCceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        69 ~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d-~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      .+|+++.|+.|+.+|+++|.+++++.+||++.+ .+++|+||||.+|+.-    +  + .+.+|.++|+++
T Consensus       146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf----~--d-~~~~V~evMT~~  209 (556)
T 4af0_A          146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF----Q--D-AETPIKSVMTTE  209 (556)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc----c--c-cceEhhhhcccc
Confidence            479999999999999999999999999999411 2689999999999832    1  2 467899999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.20  E-value=1.6e-07  Score=77.62  Aligned_cols=62  Identities=26%  Similarity=0.279  Sum_probs=0.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCC---CceEEEEeHHHHHHHHHHcCCCCccCccccccccC
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE  138 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~---~~lvGivt~~dll~~~~~~~~~~~~~~v~~im~~~  138 (139)
                      ++.++++++|+.+|++.|.+++++.+||+  |++   ++++|+||.+|+++.    .. ..+.++.++|+++
T Consensus       106 ~~~~v~~~~tv~eal~~m~~~~~s~~pVv--d~~~~~g~lvGiVt~~Dl~~~----~~-~~~~~V~diM~~~  170 (503)
T 1me8_A          106 SDSNVKPDQTFADVLAISQRTTHNTVAVT--DDGTPHGVLLGLVTQRDYPID----LT-QTETKVSDMMTPF  170 (503)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             CCeEECCCCcHHHHHHHHHHcCceEEEEE--ECCCcCCeEEEEEEHHHHHhh----hc-cccCcHHHHhCCC
Confidence            89999999999999999999999999999  555   899999999999753    11 2467788898863

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.20  E-value=1.1e-07  Score=78.38  Aligned_cols=66  Identities=21%  Similarity=0.240  Sum_probs=2.2

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccc
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~i  134 (139)
                      +++++|.+       ++.++++++|+.+|+++|.+++++.+||+  | +++++|+||.+|+....      ..+.++.++
T Consensus        89 ~~~~~m~~-------~~v~v~~~~tv~ea~~~m~~~~~s~~pVv--d-~g~lvGIVt~rDl~~~~------~~~~~V~~v  152 (490)
T 4avf_A           89 KHETAIVR-------DPVTVTPSTKIIELLQMAREYGFSGFPVV--E-QGELVGIVTGRDLRVKP------NAGDTVAAI  152 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCccc-------CceEeCCCCcHHHHHHHHHHhCCCEEEEE--E-CCEEEEEEEhHHhhhcc------ccCCcHHHH
Confidence            45667777       89999999999999999999999999999  5 89999999999995321      246788999


Q ss_pred             cc
Q 032532          135 MT  136 (139)
Q Consensus       135 m~  136 (139)
                      |+
T Consensus       153 Mt  154 (490)
T 4avf_A          153 MT  154 (490)
T ss_dssp             --
T ss_pred             hc
Confidence            98

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.18  E-value=2.1e-07  Score=76.66  Aligned_cols=60  Identities=17%  Similarity=0.277  Sum_probs=0.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|+++.     ++.++++++++.+|+++|.++++..+||+  |++++++|+||.+|++++.
T Consensus       146 ~~~V~~vMtp~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          146 GDTVAAIMTPKD-----KLVTAREGTPLEEMKAKLYENRIEKMLVV--DENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CCcHHHHhccCC-----CCEEECCCCcHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEehHHhhhhc
Confidence            468999999321     38999999999999999999999999999  7899999999999998864

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.12  E-value=4e-06  Score=68.59  Aligned_cols=60  Identities=18%  Similarity=0.305  Sum_probs=53.1

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++.++|++.      ++.++++++++.++++.|.+++.+.+||+  |++++++|++|..|+++.+.
T Consensus       151 ~~~v~~im~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          151 NAPISEHMTSE------HLVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSBTTTSCCCS------CCCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCcEEEEEEHHHHHHHHh
Confidence            45788888741      37889999999999999999999999999  78999999999999998774

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.05  E-value=5.7e-07  Score=74.63  Aligned_cols=58  Identities=16%  Similarity=0.253  Sum_probs=0.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..+|.++|++       ++++++++.++.+|.++|.++++..+|||  |++++|+|+||.+|+.+..
T Consensus       199 ~~~V~evMT~-------~lvt~~~~~~leeA~~iL~~~kieklpVV--d~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          199 ETPIKSVMTT-------EVVTGSSPITLEKANSLLRETKKGKLPIV--DSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             ceEhhhhccc-------ceEEecCCCCHHHHHHHHHHccccceeEE--ccCCcEEEEEEechhhhhh
Confidence            4689999998       89999999999999999999999999999  7899999999999998753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.99  E-value=9.3e-07  Score=72.56  Aligned_cols=61  Identities=23%  Similarity=0.382  Sum_probs=4.6

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++.++|++..     ++.++++++++.++++.|.++++..+||+  |++++++|+||..|+++.+.
T Consensus       154 ~~~v~~im~~~~-----~~~~v~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          154 SKKIKDLMTPRE-----KLIVAPPDISLEKAKEILHQHRIEKLPLV--SKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             --------------------------------------------------------------CHHHHT
T ss_pred             CCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHHcCCcEEEEE--cCCCeEEEEEEHHHHHhhhc
Confidence            357889998521     48899999999999999999999999999  78899999999999998763

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.98  E-value=3e-07  Score=75.95  Aligned_cols=70  Identities=17%  Similarity=0.242  Sum_probs=27.1

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCC---CCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~---~~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ++.++|.+       ++.++.+++++.+|+++|.+++++.+||+  |+   +++++|+||.+|+....   +.. ...++
T Consensus       109 ~~~~im~~-------~~~~v~~~~tv~ea~~~m~~~~~~~~pVv--d~~~~~~~lvGiVt~~Dl~~~~---~~~-~~~~v  175 (514)
T 1jcn_A          109 NFEQGFIT-------DPVVLSPSHTVGDVLEAKMRHGFSGIPIT--ETGTMGSKLVGIVTSRDIDFLA---EKD-HTTLL  175 (514)
T ss_dssp             TCCTTSCS-------SCCCCCC-----------------CEESC--C--------CCEECTTTTC---------------
T ss_pred             hhhhcccc-------CCEEECCCCCHHHHHHHHHhcCCCEEEEE--eCCCcCCEEEEEEEHHHHHhhh---hcc-CCCCH
Confidence            45577776       78999999999999999999999999999  55   58999999999996531   111 35678


Q ss_pred             cccccc
Q 032532          132 GDIMTE  137 (139)
Q Consensus       132 ~~im~~  137 (139)
                      .++|++
T Consensus       176 ~~vm~~  181 (514)
T 1jcn_A          176 SEVMTP  181 (514)
T ss_dssp             -----C
T ss_pred             HHHhCC
Confidence            888875

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.98  E-value=9.1e-07  Score=72.63  Aligned_cols=58  Identities=21%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|++       ++.++++++++.++++.|.+++.+.+||+  |++++++|+||.+|+++..
T Consensus       149 ~~~v~~im~~-------~~~~v~~~~~l~eal~~m~~~~~~~lpVV--de~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          149 GKLVKELMTK-------EVITVPESIEVEEALKIMIENRIDRLPVV--DERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CCCHHHHccC-------CCeEECCcCcHHHHHHHHHHcCCCEEEEE--ecCCeEEEEEEHHHHHHhh
Confidence            4578899997       78999999999999999999999999999  7889999999999998864

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.93  E-value=1e-06  Score=72.63  Aligned_cols=61  Identities=16%  Similarity=0.298  Sum_probs=42.6

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...++.++|+++.     ++.++++++++.+++++|.++++..+||+  |++|+++|+||.+|+++..
T Consensus       147 ~~~~v~diM~p~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVV--De~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          147 LTKSVAAVMTPKE-----RLATVKEGATGAEVQEKMHKARVEKILVV--NDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             TTSBGGGTSEEGG-----GCCEEECC----CGGGTCC---CCCEEEE--CTTSBCCEEECCC-----C
T ss_pred             CCCcHHHHhcCCC-----CCEEECCCCCHHHHHHHHHHcCCCEEEEE--cCCCCEEEeehHhHHHHhh
Confidence            3568999999321     38999999999999999999999999999  7899999999999998753

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.78  E-value=2.4e-06  Score=70.07  Aligned_cols=64  Identities=28%  Similarity=0.389  Sum_probs=0.8

Q ss_pred             HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccc
Q 032532           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM  135 (139)
Q Consensus        56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im  135 (139)
                      +.++|..       ++.++.+++++.++++.|.+++++.+||+  ++ ++++|+||.+|++.       . .+.++.++|
T Consensus        95 ~~~~m~~-------~~~~v~~~~tv~ea~~~~~~~~~~~~pVv--d~-~~lvGivt~~Dl~~-------~-~~~~v~~im  156 (486)
T 2cu0_A           95 AERLIVE-------DVITIAPDETVDFALFLMEKHGIDGLPVV--ED-EKVVGIITKKDIAA-------R-EGKLVKELM  156 (486)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             hhhcccc-------CceEECCCCCHHHHHHHHHHcCCcEEEEE--EC-CEEEEEEEHHHhcc-------C-CCCCHHHHc
Confidence            3456776       89999999999999999999999999999  55 99999999999864       1 345677777


Q ss_pred             cc
Q 032532          136 TE  137 (139)
Q Consensus       136 ~~  137 (139)
                      ++
T Consensus       157 ~~  158 (486)
T 2cu0_A          157 TK  158 (486)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.55  E-value=2.3e-06  Score=70.65  Aligned_cols=60  Identities=17%  Similarity=0.284  Sum_probs=41.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ..++.++|++..     ++.++++++++.+|+++|.+++...+||+  |++++++|+||++|+++.+
T Consensus       172 ~~~v~~vm~~~~-----~~~tv~~~~~l~ea~~~m~~~~~~~lpVV--d~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          172 TTLLSEVMTPRI-----ELVVAPAGVTLKEANEILQRSKKGKLPIV--NDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             ---------CCB-----CCCCEETTCCSTTTTTHHHHHTCSCCCEE--SSSSCCC----CCCCSSCC
T ss_pred             CCCHHHHhCCCC-----CCeEECCCCCHHHHHHHHHHcCCCcccEE--CCCCeEEEEEEHHHHHHHh
Confidence            467888998521     47899999999999999999999999999  7889999999999997654

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=87.46  E-value=0.2  Score=30.87  Aligned_cols=35  Identities=11%  Similarity=0.232  Sum_probs=32.2

Q ss_pred             hhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032532            2 QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS   36 (139)
Q Consensus         2 ~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~   36 (139)
                      ++|++.+..++.++-.+++++++++..+++.|+..
T Consensus         5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~   39 (78)
T 1xn7_A            5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQ   39 (78)
T ss_dssp             HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence            68999999999999999999999999999988843

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=86.65  E-value=0.27  Score=31.06  Aligned_cols=36  Identities=8%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             ChhHHHHHhhcCCCchHHHHhhhCCccccccchhhh
Q 032532            1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSS   36 (139)
Q Consensus         1 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~~~   36 (139)
                      +++|++.+..++.++-.++++.++++..++|.|+..
T Consensus         4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~   39 (87)
T 2k02_A            4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLER   39 (87)
T ss_dssp             THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence            478999999999999999999999999999988844

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-04
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-04
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	6e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	7e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	0.002
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.002
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	0.004

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.0 bits (90), Expect = 2e-05
 Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 7/82 (8%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K  +     GI+TER
Sbjct: 2   KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLV---GILTER 54

Query: 114 DYLRKIIVQGRSSKSTKVGDIM 135
           D+ RK  +  +  K T+V +IM
Sbjct: 55  DFSRKSYLLDKPVKDTQVKEIM 76

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 6/52 (11%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS---VAGIITERDYLRKI 119
            ++     ++ DA  +M++     + ++    +     +  ++T+   L+ I
Sbjct: 117 TIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFI 168

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
            +  + + +++DAV S+ ++ +  L V+   E  +   I+T +  L+
Sbjct: 106 LVCISPNASLFDAVSSLIRNKIHRLPVID-PESGNTLYILTHKRILK 151

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
               +  + + ++ M +H +  +++ + G+   + GI T  D L    
Sbjct: 82  TANVNTPLGEVLRKMAEHRIKHILIEEEGK---IVGIFTLSDLLEASR 126

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.1 bits (80), Expect = 7e-04
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR 117
            +      T+ +A + + +   G L +V   E   +  II   D  +
Sbjct: 73  LVVAPAGITLKEANEILQRSKKGKLPIVN--ENDELVAIIARTDLKK 117

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
               +DT+  A K M +++   +VVV    +    GI+T  D +R+  
Sbjct: 72  VVKENDTLKKAAKLMLEYDYRRVVVVD--SKGKPVGILTVGDIIRRYF 117

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII 120
                  + ++   M +H +G L VV       + GIIT+ D++   I
Sbjct: 87  SVAPQAGLKESAIYMQKHKIGCLPVVAKDV---LVGIITDSDFVTIAI 131

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 33.5 bits (75), Expect = 0.004
 Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 3/48 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI 119
                  ++       +   +    V   G+   + G++   +    I
Sbjct: 114 FQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK---LVGVVALAEIQAAI 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.5
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.47
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.47
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.43
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.38
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.37
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.33
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.31
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.3
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.22
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.21
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.2
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.19
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.18
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.17
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.17
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.16
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.15
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.1
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.09
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.08
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.06
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.06
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.05
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.04
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.03
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.03
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.03
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.03
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.02
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.01
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.99
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.98
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.98
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.96
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.94
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.94
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.93
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.93
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.93
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.93
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.92
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.89
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.89
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.87
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.85
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.85
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.83
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.79
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.75
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.61
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.58
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	91.76
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	86.28
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	82.51

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=1.1e-14  Score=97.37  Aligned_cols=77  Identities=26%  Similarity=0.500  Sum_probs=67.7

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      .+++|+|++       ++.++.+++++.+|++.|.+++++++||+  |++|+++|++|.+|+++.+..++.......+++
T Consensus         1 tt~~diM~~-------~~~~v~~~~tl~~a~~~m~~~~~~~~pVv--d~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~   71 (123)
T d1y5ha3           1 TTARDIMNA-------GVTCVGEHETLTAAAQYMREHDIGALPIC--GDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGE   71 (123)
T ss_dssp             CCHHHHSEE-------TCCCEETTSBHHHHHHHHHHHTCSEEEEE--CGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHH
T ss_pred             CCHHHhcCC-------CCcEECCcCcHHHHHHHHHHcCCCceEEE--eccchhhhhhhhhhHhhhhhhcCCCcccceEEE
Confidence            479999998       89999999999999999999999999999  778999999999999887776776655667889


Q ss_pred             ccccCC
Q 032532          134 IMTEEV  139 (139)
Q Consensus       134 im~~~v  139 (139)
                      +|++++
T Consensus        72 im~~~~   77 (123)
T d1y5ha3          72 LARDSI   77 (123)
T ss_dssp             HHTTCC
T ss_pred             Eeeccc
Confidence            987753

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.47  E-value=7.4e-14  Score=95.60  Aligned_cols=77  Identities=21%  Similarity=0.421  Sum_probs=69.5

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      ++|+|+|++       ++.++++++|+.+|++.|.+++.+++||+  |++++++|++|.+|+++++...+......++++
T Consensus         3 m~v~dim~~-------~~~~v~~~~tl~~a~~~m~~~~~~~~~V~--d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~   73 (142)
T d1pvma4           3 MRVEKIMNS-------NFKTVNWNTTVFDAVKIMNENHLYGLVVK--DDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRL   73 (142)
T ss_dssp             CBGGGTSBT-------TCCEEETTCBHHHHHHHHHHHTCCEEEEE--CTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGG
T ss_pred             EEHHHhCCC-------CCcEECCcCcHHHHHHHHHHCCCceEeee--ccCCcccceEEeechhhhhhhhccccccccccc
Confidence            689999999       89999999999999999999999999999  788999999999999988776666656778999


Q ss_pred             ccccCC
Q 032532          134 IMTEEV  139 (139)
Q Consensus       134 im~~~v  139 (139)
                      +|++++
T Consensus        74 im~~~~   79 (142)
T d1pvma4          74 VMRKPI   79 (142)
T ss_dssp             TSBSSC
T ss_pred             cccccc
Confidence            998764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=7.7e-14  Score=94.32  Aligned_cols=76  Identities=29%  Similarity=0.467  Sum_probs=68.0

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      .+|+++|++       ++.++++++|+.+|++.|.+++++++||+  |++|+++|++|.+|+++.++..+.. .+.++++
T Consensus         5 ~pV~~im~~-------~~~~v~~~~t~~~a~~~m~~~~~~~~~Vv--d~~~~~~Giit~~di~~~~~~~~~~-~~~~v~~   74 (132)
T d2yzia1           5 APIKVYMTK-------KLLGVKPSTSVQEASRLMMEFDVGSLVVI--NDDGNVVGFFTKSDIIRRVIVPGLP-YDIPVER   74 (132)
T ss_dssp             SBGGGTCBC-------CCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTTTTCCC-TTSBGGG
T ss_pred             CcHHHHcCC-------CCeEECCcCcHHHHHHHHHHcCCcEEEEe--cccceeeeeeeHHHHHHHHhhccCc-cceeEee
Confidence            579999998       89999999999999999999999999999  7889999999999999887655544 5788999


Q ss_pred             ccccCC
Q 032532          134 IMTEEV  139 (139)
Q Consensus       134 im~~~v  139 (139)
                      +|.+++
T Consensus        75 im~~~~   80 (132)
T d2yzia1          75 IMTRNL   80 (132)
T ss_dssp             TCBCSC
T ss_pred             cccccc
Confidence            998753

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.43  E-value=2.7e-13  Score=90.98  Aligned_cols=79  Identities=37%  Similarity=0.636  Sum_probs=67.7

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      .+|+|+|+.|..    ++.++.+++|+.+|++.|.+++++++||+  + +++++|++|.+|+++++...+....+.++.+
T Consensus         2 ~tV~dim~~k~~----~v~~i~~~~tl~~a~~~m~~~~~~~vpV~--~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~   74 (127)
T d2rc3a1           2 KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVM--K-DEKLVGILTERDFSRKSYLLDKPVKDTQVKE   74 (127)
T ss_dssp             CBHHHHHHHHCC----CCCEECTTSBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGG
T ss_pred             ccHHHHHccCCC----ccEEECCcCcHHHHHHHHHHcCCCEEEEE--E-CCeEEEEEEccchhhhhhhhcccccceeEee
Confidence            479999986521    58999999999999999999999999999  3 6899999999999988766666656788999


Q ss_pred             ccccCC
Q 032532          134 IMTEEV  139 (139)
Q Consensus       134 im~~~v  139 (139)
                      +|++++
T Consensus        75 im~~~~   80 (127)
T d2rc3a1          75 IMTRQV   80 (127)
T ss_dssp             TSBCSC
T ss_pred             ecccee
Confidence            998763

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=6.2e-13  Score=88.38  Aligned_cols=74  Identities=22%  Similarity=0.318  Sum_probs=64.4

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCccccc
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDI  134 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~i  134 (139)
                      +|+|+|++       ++.++++++|+.+|++.|.+++++++||+  + +|+++|++|.+||++++.. +....+.++.++
T Consensus         1 kV~diM~~-------~~~~v~~~~sl~ea~~~~~~~~~~~~~V~--~-~~~~~Gvit~~Di~~~l~~-~~~~~~~~v~~~   69 (120)
T d1pbja3           1 RVEDVMVT-------DVDTIDITASLEDVLRNYVENAKGSSVVV--K-EGVRVGIVTTWDVLEAIAE-GDDLAEVKVWEV   69 (120)
T ss_dssp             CHHHHCBC-------SCCEEETTCBHHHHHHHHHHHCCCEEEEE--E-TTEEEEEEEHHHHHHHHHH-TCCTTTSBHHHH
T ss_pred             ChHHhCCC-------CCeEECCcCcHHHHHHHHHHcCceEEEEE--e-CCcEEEEEEeeeccccccc-cccccceeEeee
Confidence            48999999       89999999999999999999999999998  3 5899999999999988764 444467789999


Q ss_pred             cccCC
Q 032532          135 MTEEV  139 (139)
Q Consensus       135 m~~~v  139 (139)
                      |++++
T Consensus        70 m~~~~   74 (120)
T d1pbja3          70 MERDL   74 (120)
T ss_dssp             CBCGG
T ss_pred             ccccc
Confidence            97653

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.37  E-value=4.8e-13  Score=90.99  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC-------CC
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-------SS  126 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~-------~~  126 (139)
                      .+|+|+|++       ++.++.+++|+.+|++.|.+++++++||+  |++++++|+||.+|+++.+...-.       ..
T Consensus         2 i~v~diM~~-------~~~~v~~~~tl~~a~~~m~~~~~~~lpVv--d~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~   72 (139)
T d2o16a3           2 IKVEDMMTR-------HPHTLLRTHTLNDAKHLMEALDIRHVPIV--DANKKLLGIVSQRDLLAAQESSLQRSAQGDSLA   72 (139)
T ss_dssp             CBGGGTSEE-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHHHCC---------
T ss_pred             EEHHHhCcC-------CCeEECCcCCHHHHHHHHHHcCCCeeeee--cccccccccccHHHHHHHHHhhhhhhhcccccc
Confidence            579999998       89999999999999999999999999999  788999999999999887654311       12


Q ss_pred             ccCccccccccC
Q 032532          127 KSTKVGDIMTEE  138 (139)
Q Consensus       127 ~~~~v~~im~~~  138 (139)
                      ...+++++|+++
T Consensus        73 ~~~~v~~im~~~   84 (139)
T d2o16a3          73 FETPLFEVMHTD   84 (139)
T ss_dssp             CCCBHHHHSCSC
T ss_pred             cccchhHhhccc
Confidence            356788888765

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.33  E-value=1.2e-12  Score=88.22  Aligned_cols=79  Identities=14%  Similarity=0.217  Sum_probs=64.6

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC----CCccC
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR----SSKST  129 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~----~~~~~  129 (139)
                      .+|+++|.+..     ...++.+++|+.+|++.|.+++++++||+  |++|+++|++|.+|+++++.....    .....
T Consensus         2 ~tv~~~mip~~-----~v~~v~~~~tl~~a~~~m~~~~~s~~pVv--d~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~   74 (132)
T d1yava3           2 ATVGQFMIEAD-----KVAHVQVGNNLEHALLVLTKTGYTAIPVL--DPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI   74 (132)
T ss_dssp             CBHHHHSEEGG-----GSCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTS
T ss_pred             CCHHHcccccc-----ceEEEcCCCCHHHHHHHHHhhCCCceEEe--ecccccccEEEcchhHHHhhccccccccccccc
Confidence            58999996643     68999999999999999999999999999  778999999999999988753221    12345


Q ss_pred             ccccccccCC
Q 032532          130 KVGDIMTEEV  139 (139)
Q Consensus       130 ~v~~im~~~v  139 (139)
                      ++.++|++++
T Consensus        75 ~v~~~m~~~~   84 (132)
T d1yava3          75 TVEEVMLTDI   84 (132)
T ss_dssp             BHHHHSBCSC
T ss_pred             cccccccccc
Confidence            7788887653

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.31  E-value=2.9e-12  Score=86.03  Aligned_cols=61  Identities=23%  Similarity=0.255  Sum_probs=56.4

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ....+++++|++       ++.++++++++.+|++.|.++++.++||+  |++|+++|+||.+|+++.+-
T Consensus        62 ~~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lPVV--D~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          62 DDDTLIADILNE-------RVISVHVGDDQEDVAQTIRDYDFLAVPVT--DYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             CTTSBHHHHSBS-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             cccEEhhhhccC-------CCccCCCCCCHHHHHHHHHHhCCEEEEEE--eCCCEEEEEEEHHHHHHHHH
Confidence            346789999999       89999999999999999999999999999  78999999999999998763

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.30  E-value=3.9e-12  Score=85.09  Aligned_cols=76  Identities=34%  Similarity=0.531  Sum_probs=65.4

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKV  131 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v  131 (139)
                      ....|+++|++       +++++.+++|+.+|+++|.+++++++||+  + +++++|++|.+|+++.+. .+.. .+.++
T Consensus         2 ~~~~V~d~m~~-------~~v~v~~~~tl~~a~~~m~~~~~~~~pV~--d-~~~~~Givt~~dl~~~~~-~~~~-~~~~v   69 (127)
T d2ef7a1           2 EEEIVKEYMKT-------QVISVTKDAKLNDIAKVMTEKNIGSVIVV--D-GNKPVGIITERDIVKAIG-KGKS-LETKA   69 (127)
T ss_dssp             CCCBGGGTSBC-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH-TTCC-TTCBG
T ss_pred             CccCHHHhCCC-------CCeEECCcCcHHHHHHHHHHcCCceEEee--c-ccchhhhcchhHHHHHHH-hhcc-ccchh
Confidence            35689999998       89999999999999999999999999999  3 578999999999988765 4444 57789


Q ss_pred             ccccccCC
Q 032532          132 GDIMTEEV  139 (139)
Q Consensus       132 ~~im~~~v  139 (139)
                      .++|.+++
T Consensus        70 ~~~~~~~~   77 (127)
T d2ef7a1          70 EEFMTASL   77 (127)
T ss_dssp             GGTSEECC
T ss_pred             hhhhhhhc
Confidence            99997653

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=7.8e-12  Score=83.00  Aligned_cols=69  Identities=13%  Similarity=0.208  Sum_probs=61.1

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      ++++++|++       ++.++++++|+.+|+++|.+++.+++||+  |++++++|++|.+|++++       ..+.++.+
T Consensus         1 m~v~~~m~~-------~~~~v~~~~tv~ea~~~m~~~~~~~v~Vv--d~~~~~~Gii~~~dl~~~-------~~~~~v~~   64 (121)
T d1vr9a3           1 MKVKKWVTQ-------DFPMVEESATVRECLHRMRQYQTNECIVK--DREGHFRGVVNKEDLLDL-------DLDSSVFN   64 (121)
T ss_dssp             CBGGGGCBS-------CSCEEETTCBHHHHHHHHHHTTSSEEEEE--CTTSBEEEEEEGGGGTTS-------CTTSBSGG
T ss_pred             CCchhhhcC-------CCeEECCCCCHHHHHHhhhhcCcEEEEEE--eCCceeEEEeehhhhhhh-------hccccccc
Confidence            478999998       89999999999999999999999999999  788999999999999642       24678888


Q ss_pred             ccccC
Q 032532          134 IMTEE  138 (139)
Q Consensus       134 im~~~  138 (139)
                      +|..+
T Consensus        65 ~~~~~   69 (121)
T d1vr9a3          65 KVSLP   69 (121)
T ss_dssp             GCBCT
T ss_pred             cccCc
Confidence            88765

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=2.2e-12  Score=85.89  Aligned_cols=69  Identities=16%  Similarity=0.212  Sum_probs=43.0

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGD  133 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~  133 (139)
                      ++|+++|++       +++++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|++...       ...++.+
T Consensus         1 m~v~diM~~-------~~v~v~~~~~v~~a~~~m~~~~~~~~~Vv--d~~~~~~G~it~~dl~~~~-------~~~~~~~   64 (122)
T d2yzqa2           1 MRVKTIMTQ-------NPVTITLPATRNYALELFKKYKVRSFPVV--NKEGKLVGIISVKRILVNP-------DEEQLAM   64 (122)
T ss_dssp             CBHHHHSEE-------SCCCEESSCC------------CCEEEEE--CTTCCEEEEEESSCC-----------------C
T ss_pred             CCcccccCC-------CCEEECCcCcHHHHHHHHHHcCCcEEEEE--eccccchhhhhcchhhhhh-------cccchhh
Confidence            579999999       89999999999999999999999999999  7899999999999997642       3456777


Q ss_pred             ccccC
Q 032532          134 IMTEE  138 (139)
Q Consensus       134 im~~~  138 (139)
                      +|.++
T Consensus        65 ~~~~~   69 (122)
T d2yzqa2          65 LVKRD   69 (122)
T ss_dssp             CCBSC
T ss_pred             ccccc
Confidence            77654

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.20  E-value=2.8e-12  Score=86.74  Aligned_cols=59  Identities=24%  Similarity=0.428  Sum_probs=55.5

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..+++++|++       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++++.
T Consensus        72 ~~~v~~im~~-------~~~~v~~~~~~~~~~~~m~~~~~~~l~Vv--d~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          72 GKVVKDVMVT-------NLVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             TCBHHHHSBC-------CCCBCCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             CCCHHHHhCc-------ccccccccchhhHHHHHHHHcCCCEEEEE--ccCCEEEEEEEHHHHHHHHH
Confidence            5689999998       89999999999999999999999999999  78999999999999998874

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=1e-11  Score=85.25  Aligned_cols=57  Identities=25%  Similarity=0.270  Sum_probs=53.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ...++.++|++       ++.++.+++++.+|++.|.+++++++||+  |++|+++|++|..|+++
T Consensus         2 ~~~~v~~~m~r-------~v~~v~~~~~l~~a~~~m~~~~~~~lPVv--d~~~~lvG~it~~Dl~~   58 (156)
T d2yzqa1           2 KGVEIEPYYQR-------YVSIVWEGTPLKAALKALLLSNSMALPVV--DSEGNLVGIVDETDLLR   58 (156)
T ss_dssp             GGCBSTTTSBS-------CCCCEETTSBHHHHHHHHHTCSSSEEEEE--CTTSCEEEEEEGGGGGG
T ss_pred             CCCCHHHHhcC-------CCeEECCcCcHHHHHHHHHHcCCCEEEEE--eCCCCceeEEeeeechh
Confidence            35789999999       89999999999999999999999999999  78899999999999864

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.18  E-value=1.1e-11  Score=83.76  Aligned_cols=76  Identities=17%  Similarity=0.188  Sum_probs=63.9

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCC-----CCcc
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGR-----SSKS  128 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~-----~~~~  128 (139)
                      .+|+++|++       ++.++++++|+.+|++.|.+++++++||+  +++++++|++|..|+++.+.....     ....
T Consensus         2 ~~V~~iMt~-------~v~~v~~~~tl~~a~~~m~~~~~~~ipVv--~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~   72 (141)
T d3ddja1           2 FPVKVFMST-------KVQTIYKEVRLDQAVKLMLRRGFRRLPVI--DDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYG   72 (141)
T ss_dssp             CBHHHHSBC-------SCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHT
T ss_pred             EeeHHhCcC-------CCeEEcCcCcHHHHHHHHHHcCCCeeecc--cccCccccccccccchhhhhccccccccccccC
Confidence            589999999       89999999999999999999999999999  789999999999999887643210     1135


Q ss_pred             CccccccccC
Q 032532          129 TKVGDIMTEE  138 (139)
Q Consensus       129 ~~v~~im~~~  138 (139)
                      .+++++|+++
T Consensus        73 ~~v~~im~~~   82 (141)
T d3ddja1          73 KVVKDVMVTN   82 (141)
T ss_dssp             CBHHHHSBCC
T ss_pred             CCHHHHhCcc
Confidence            5788888765

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=3.7e-11  Score=82.10  Aligned_cols=61  Identities=23%  Similarity=0.361  Sum_probs=56.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ...++.++|++       ++.++++++++.+|++.|.++++.++|||  |++|+++|+||.+|+++.+..
T Consensus        63 ~~~~v~~im~~-------~~~~v~~~~~~~~a~~~m~~~~~~~lPVV--d~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          63 PRTRVAEIMNP-------KVVYVRTDTDQEEVARLMADYDFTVLPVV--DEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             TTCBSTTTSBS-------SCCCEESSCCHHHHHHHHHHSCCSEEEEE--CSSCBEEEEEEHHHHHHHHHH
T ss_pred             cccchHHhccc-------CCccCCCCChHHHHHHHHHHcCCCEEEEE--eECCEEEEEEEHHHHHHHHHH
Confidence            45789999999       89999999999999999999999999999  788999999999999987643

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.17  E-value=7.2e-12  Score=83.77  Aligned_cols=60  Identities=30%  Similarity=0.377  Sum_probs=55.6

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++.++|.+       ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||..|+++++.
T Consensus        65 ~~~~v~~~~~~-------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          65 LETKAEEFMTA-------SLITIREDSPITGALALMRQFNIRHLPVV--DDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             TTCBGGGTSEE-------CCCCEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHH
T ss_pred             ccchhhhhhhh-------hccccccccchhHHHHHHHHcCceEEEEE--eCCCeEEEEEEHHHHHHHHH
Confidence            34689999998       89999999999999999999999999999  78999999999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.16  E-value=5.7e-11  Score=79.33  Aligned_cols=61  Identities=21%  Similarity=0.338  Sum_probs=54.9

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ++|+|+|++       +++++++++|+.+|++.|.+++++++||++.|.+++++|++|..|+++.+..
T Consensus         1 ~~V~dim~~-------~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~   61 (131)
T d2riha1           1 IRTSELLKR-------PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ   61 (131)
T ss_dssp             CBGGGGCCS-------CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred             CCHHHhccC-------CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccc
Confidence            478999998       8999999999999999999999999999964457899999999999887643

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.15  E-value=8.1e-12  Score=83.58  Aligned_cols=58  Identities=21%  Similarity=0.351  Sum_probs=53.8

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++.++|++       ++.++.+++++.+|++.|.+++++++||+  | +|+++|+||..|++++++
T Consensus        69 ~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          69 DTQVKEIMTR-------QVAYVDLNNTNEDCMALITEMRVRHLPVL--D-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             GSBGGGTSBC-------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHHH
T ss_pred             ceeEeeeccc-------eeEEeccCccHHHHHHHHHHCCCcEEEEE--E-CCEEEEEEEHHHHHHHHh
Confidence            4689999998       89999999999999999999999999999  4 689999999999998864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.10  E-value=6.3e-11  Score=79.30  Aligned_cols=69  Identities=23%  Similarity=0.402  Sum_probs=60.0

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcC-----CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~-----~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      +++.+|++       ++.++++++|+.+|++.|++++     ++++||+  |++++++|+++.++++.+       ..+.
T Consensus         2 taG~iM~~-------d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv--d~~~~l~G~v~~~~l~~~-------~~~~   65 (127)
T d2ouxa2           2 TAGAIMTT-------EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVV--DQENHLVGVISLRDLIVN-------DDDT   65 (127)
T ss_dssp             BHHHHCBS-------CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEE--CTTCBEEEEEEHHHHTTS-------CTTS
T ss_pred             ChhHhCCC-------CcEEECCCCcHHHHHHHhHhhcccccceeeeEEE--ecCCeEEEEEEeeccccc-------cccE
Confidence            68999999       8999999999999999998874     7899999  889999999999998532       2468


Q ss_pred             ccccccccCC
Q 032532          130 KVGDIMTEEV  139 (139)
Q Consensus       130 ~v~~im~~~v  139 (139)
                      +++++|++++
T Consensus        66 ~v~~im~~~~   75 (127)
T d2ouxa2          66 LIADILNERV   75 (127)
T ss_dssp             BHHHHSBSCC
T ss_pred             EhhhhccCCC
Confidence            8999998753

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.09  E-value=3.8e-11  Score=80.51  Aligned_cols=59  Identities=27%  Similarity=0.388  Sum_probs=55.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...+++++|++       ++.++++++++.+|+++|.+++++++||+  |++|+++|+||.+|+++.+
T Consensus        72 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~i~~lpVv--d~~g~lvGiit~~Dil~~~  130 (135)
T d3ddja2          72 STTPIIDYMTP-------NPVTVYNTSDEFTAINIMVTRNFGSLPVV--DINDKPVGIVTEREFLLLY  130 (135)
T ss_dssp             HTSBGGGTSEE-------SCCCEETTSCHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHGGGG
T ss_pred             ccCCHHHHhCC-------ccceEEeccccchhhhhhhhcceeEEEEE--eCCCEEEEEEEHHHHHHHH
Confidence            35789999999       89999999999999999999999999999  7899999999999998765

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=3.8e-11  Score=82.29  Aligned_cols=59  Identities=19%  Similarity=0.331  Sum_probs=54.7

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...++.++|++       ++.++.+++++.++++.|.+++++++||+  |++|+++||||.+||++++
T Consensus        97 ~~~~v~~~m~~-------~~~tv~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          97 PNKPVAEIMTR-------DVIVATPHMTVHEVALKMAKYSIEQLPVI--RGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             CCCBGGGTCBS-------SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--ETTTEEEEEEEHHHHGGGG
T ss_pred             cCCEeehhccc-------CceEECcccccHHHHHHHHHcCeeEEEEE--eCCCEEEEEEEHHHHHHHh
Confidence            45789999998       89999999999999999999999999999  6889999999999998764

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.06  E-value=2.4e-10  Score=75.49  Aligned_cols=59  Identities=20%  Similarity=0.357  Sum_probs=53.8

Q ss_pred             CccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        51 ~~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ....++.++|++       ++.++++++++.+|++.|.+++++++||+   ++|+++|++|..|++++.
T Consensus        61 ~~~~~v~~~m~~-------~~~~v~~~~~l~~a~~~m~~~~~~~l~V~---~~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          61 LAEVKVWEVMER-------DLVTISPRATIKEAAEKMVKNVVWRLLVE---EDDEIIGVISATDILRAK  119 (120)
T ss_dssp             TTTSBHHHHCBC-------GGGEECTTSCHHHHHHHHHHHTCSEEEEE---ETTEEEEEEEHHHHHHHH
T ss_pred             ccceeEeeeccc-------ccccccchhHHHHHHHHHHHcCCeEEEEE---ECCEEEEEEEHHHHHhcC
Confidence            345789999998       89999999999999999999999999998   468999999999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.06  E-value=1.4e-10  Score=78.37  Aligned_cols=59  Identities=22%  Similarity=0.392  Sum_probs=54.4

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|++       ++.++++++++.+|+++|.+++++++||+  | +|+++|+||..|+++++.
T Consensus        73 ~~~~v~~im~~-------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          73 FETPLFEVMHT-------DVTSVAPQAGLKESAIYMQKHKIGCLPVV--A-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             CCCBHHHHSCS-------CEEEBCTTSBHHHHHHHHHHTTCSCEEEE--E-TTEEEEEECHHHHHHHHH
T ss_pred             cccchhHhhcc-------ccccccccchHHHHHHHHHHcCceEEEEE--E-CCEEEEEEEHHHHHHHHH
Confidence            45789999998       89999999999999999999999999999  4 589999999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1.1e-10  Score=77.37  Aligned_cols=60  Identities=23%  Similarity=0.322  Sum_probs=51.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...++.++|.+       ++.++++++++.+|++.|.+++++++||+  |++|+++|+||.+|++++++
T Consensus        58 ~~~~~~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--d~~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          58 DEEQLAMLVKR-------DVPVVKENDTLKKAAKLMLEYDYRRVVVV--DSKGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             ------CCCBS-------CCCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHTT
T ss_pred             cccchhhcccc-------ceeecchhhHHHHHHHHHHHcCcEEEEEE--eCCCEEEEEEEHHHHHHHHH
Confidence            34678999998       89999999999999999999999999999  78999999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.04  E-value=1.9e-10  Score=78.47  Aligned_cols=63  Identities=13%  Similarity=0.126  Sum_probs=56.3

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++|+|+|++       ++.++++++|+.+|++.|.+++++++||+++++++.++|++|..|+++++..
T Consensus         9 ~~~~V~diM~~-------~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~   71 (160)
T d2d4za3           9 YNIQVGDIMVR-------DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR   71 (160)
T ss_dssp             SSCBTTSSSBS-------SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             cceEHHHhcCC-------CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhh
Confidence            46899999998       8999999999999999999999999999953346799999999999887754

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=3.7e-10  Score=74.63  Aligned_cols=59  Identities=19%  Similarity=0.343  Sum_probs=55.5

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++.++|..       ++.++++++++.+|++.|.+++..++||+  |++|+++|+||..|+++++.
T Consensus        59 ~~~v~~~~~~-------~~~~v~~~~~l~~~~~~~~~~~~~~lpVv--de~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          59 DSSVFNKVSL-------PDFFVHEEDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             TSBSGGGCBC-------TTCCEETTSBHHHHHHHHHHCCCSEEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             cccccccccC-------ccEEECCCCCHHHHHHHHHhcCceeeeeE--CCCCeEEEEEEHHHHHHHHH
Confidence            5689999998       89999999999999999999999999999  78999999999999999875

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.03  E-value=1.7e-10  Score=76.42  Aligned_cols=57  Identities=21%  Similarity=0.457  Sum_probs=52.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      ...+++++|++       ++.++++++++.+|++.|.+++++++||+  | +++++|+||..||+++
T Consensus        65 ~~~~v~~im~~-------~~~~v~~~~~~~~~~~~m~~~~~~~lpVv--d-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          65 NTATAGELARD-------SIYYVDANASIQEMLNVMEEHQVRRVPVI--S-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             TTSBHHHHHTT-------CCCCEETTCCHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHT
T ss_pred             ccceEEEEeec-------cceeeeecchHHHHHHHHHHcCceEEEEE--E-CCEEEEEEEHHHHHhh
Confidence            35679999998       89999999999999999999999999999  4 5799999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=4.2e-11  Score=81.31  Aligned_cols=67  Identities=24%  Similarity=0.407  Sum_probs=54.4

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcC
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQG  123 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~  123 (139)
                      .++.+++... ..+..++.++.+++++.++++.|.+++++++||+  |++|+++|+||.+||+++++.+|
T Consensus        78 ~~v~~~~~~~-~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~g~l~GiVt~~dii~~lv~~~  144 (145)
T d2v8qe1          78 VSVTKALQHR-SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQALVLTG  144 (145)
T ss_dssp             SBHHHHGGGC-CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHHSSC
T ss_pred             hhhhhccchh-hhccCCCeEECCCCcHHHHHHHHHHcCceEEEEE--ccCCEEEEEEEHHHHHHHHHhcC
Confidence            4555555431 1122378899999999999999999999999999  78999999999999999987543

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.03  E-value=1.1e-10  Score=79.34  Aligned_cols=59  Identities=20%  Similarity=0.288  Sum_probs=54.5

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ...+++++|++       ++.++++++++.+|++.|.+++++++||+  |++|+++|+||..||++++
T Consensus        67 ~~~~v~~im~~-------~~~~v~~~~~l~~~~~~m~~~~~~~lpVv--d~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          67 DEVPIRLVMRK-------PIPKVKSDYDVKDVAAYLSENGLERCAVV--DDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             GGSBGGGTSBS-------SCCEEETTCBHHHHHHHHHHHTCSEEEEE--CTTCCEEEEEEHHHHTTTS
T ss_pred             ccccccccccc-------ccccccchhhHHHHHHHHHHcCCcEEEEE--ecCCEEEEEEEHHHHHHHH
Confidence            34689999998       89999999999999999999999999999  7889999999999998754

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=2.9e-11  Score=82.62  Aligned_cols=69  Identities=19%  Similarity=0.348  Sum_probs=59.3

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcC-----CCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccC
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKST  129 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~-----~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~  129 (139)
                      +++.+|++       ++.++++++|+.+|++.|++++     +..+||+  |++++++|+++.+|+++.       ....
T Consensus         2 taG~iM~~-------~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vv--d~~~~l~G~v~~~dl~~~-------~~~~   65 (144)
T d2yvxa2           2 EAGGLMTP-------EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVV--DEKGRLKGVLSLRDLIVA-------DPRT   65 (144)
T ss_dssp             SSGGGCBS-------CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEB--CTTCBBCCBCBHHHHTTS-------CTTC
T ss_pred             CcccccCC-------CCEEECCCCcHHHHHHHHHHhcccccceeeeEEe--cCCCCEecccchhhhhhc-------cccc
Confidence            58899999       8999999999999999998774     7889999  789999999999998542       2467


Q ss_pred             ccccccccCC
Q 032532          130 KVGDIMTEEV  139 (139)
Q Consensus       130 ~v~~im~~~v  139 (139)
                      ++.++|++++
T Consensus        66 ~v~~im~~~~   75 (144)
T d2yvxa2          66 RVAEIMNPKV   75 (144)
T ss_dssp             BSTTTSBSSC
T ss_pred             chHHhcccCC
Confidence            8899998753

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.01  E-value=2.9e-10  Score=75.67  Aligned_cols=50  Identities=22%  Similarity=0.276  Sum_probs=44.0

Q ss_pred             CCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        69 ~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      .+|+++++++|+.+|+++|.+++++++||+++..+++++|+||.+|+.++
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~   54 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI   54 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHh
Confidence            37899999999999999999999999999932137899999999999764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=8.2e-10  Score=74.53  Aligned_cols=61  Identities=20%  Similarity=0.287  Sum_probs=54.5

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ...++.++|..        +.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|+++++..+
T Consensus        82 ~~~~~~~~~~~--------~~~i~~~~~l~~a~~~m~~~~i~~lpVV--d~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          82 IAKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVV--DEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             SSCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHHHHHHS
T ss_pred             cccCHHHHcCC--------CEEEcCCCCHHHHHHHHHHcCceEEEEE--eCCCeEEEEEEHHHHHHHHHhc
Confidence            44678888865        7889999999999999999999999999  7899999999999999988643

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1e-09  Score=76.16  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=52.1

Q ss_pred             CcHHHHhhhcCCCCCCCc--EEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSW--LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~--~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++|+|.+....   ++  +.+.+++|+.+|.++|.+++++++||++++++++++|+||.+||++++.
T Consensus         3 ~~a~DiM~p~~~~---~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~   68 (169)
T d2j9la1           3 TLAMDVMKPRRND---PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE   68 (169)
T ss_dssp             CBHHHHSBSCTTS---CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             cchhhhcCcCCCC---CceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHh
Confidence            4689999874211   22  4467888999999999999999999996446789999999999998775

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.98  E-value=2.1e-10  Score=76.76  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=59.7

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCC--------
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRS--------  125 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~--------  125 (139)
                      ++|+++|++       ++.++.+++|+.+|++.|.+++++++||+  |  ++++|++|..|+++.+......        
T Consensus         1 m~V~~lM~~-------~~~~v~~~~tl~~a~~~m~~~~~~~l~V~--d--~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~   69 (135)
T d3ddja2           1 MNIETLMIK-------NPPILSKEDRLGSAFKKINEGGIGRIIVA--N--EKIEGLLTTRDLLSTVESYCKDSCSQGDLY   69 (135)
T ss_dssp             SSGGGTCEE-------SCCEECTTSBHHHHHHHTTGGGCCEEEEE--S--SSEEEEEEHHHHHGGGTTCC---CCHHHHH
T ss_pred             CEeeEEeeC-------CCeEECCCCcHHHHHHHHHHhCCeEEEEE--e--cceeceeeccchhhhhccccccchhhhhcc
Confidence            478999998       89999999999999999999999999999  3  4799999999998765322211        


Q ss_pred             -CccCccccccccC
Q 032532          126 -SKSTKVGDIMTEE  138 (139)
Q Consensus       126 -~~~~~v~~im~~~  138 (139)
                       ....+++++|+.+
T Consensus        70 ~~~~~~v~~im~~~   83 (135)
T d3ddja2          70 HISTTPIIDYMTPN   83 (135)
T ss_dssp             HHHTSBGGGTSEES
T ss_pred             ccccCCHHHHhCCc
Confidence             1245688888765

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.96  E-value=3.1e-10  Score=77.41  Aligned_cols=58  Identities=7%  Similarity=0.011  Sum_probs=52.2

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ....+.++|.+       ++.++.+++++.+|+++|.+++++++||+  + +|+++||||++||++++
T Consensus       101 ~~~~~~~~~~~-------~~~tv~~~~~l~~~~~~m~~~~v~~l~V~--d-~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3         101 VVNFETCRIDQ-------SPFQLVEGTSLQKTHTLFSLLGLDRAYVT--S-MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             BCCTTSSCEEC-------CSCCBCTTCBHHHHHHHHHHHTCSEEEEE--E-TTEEEEEEEHHHHHHHH
T ss_pred             ccceeeecccC-------CCEEEcCCCCHHHHHHHHHHcCCeEEEEE--E-CCEEEEEEEHHHHHHHh
Confidence            34557788888       89999999999999999999999999998  3 68999999999999876

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.5e-10  Score=77.60  Aligned_cols=61  Identities=21%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ...+++++|.+       ++.++.+++++.+++++|.+++..++||+   ++|+++|+||++|+++++...
T Consensus        98 ~~~~v~~im~~-------~~~tv~~~~~l~~v~~~~~~~~~~~l~V~---d~g~lvGiIt~~Dil~~l~~~  158 (169)
T d2j9la1          98 PTLKLRNILDL-------SPFTVTDLTPMEIVVDIFRKLGLRQCLVT---HNGRLLGIITKKDVLKHIAQM  158 (169)
T ss_dssp             CCEECGGGEES-------SCCEEETTSBHHHHHHHHHHHTCSEEEEE---ETTEEEEEEEHHHHHHHHHHH
T ss_pred             cccchhhhccC-------CCEEECCCCcHHHHHHHHHhcCceEEEEE---ECCEEEEEEEHHHHHHHHHHH
Confidence            45679999998       89999999999999999999999999998   478999999999999988643

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.94  E-value=8e-10  Score=74.00  Aligned_cols=59  Identities=15%  Similarity=0.327  Sum_probs=54.0

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|.+       ++.++++++++.+|++.|.+++++++||+   ++|+++|+||..|+++++.
T Consensus        68 ~~~~v~~im~~-------~~~~v~~~~~~~~~~~~m~~~~~~~l~V~---~~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          68 YDIPVERIMTR-------NLITANVNTPLGEVLRKMAEHRIKHILIE---EEGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             TTSBGGGTCBC-------SCCEEETTSBHHHHHHHHHHHTCSEEEEE---ETTEEEEEEEHHHHHHHHH
T ss_pred             cceeEeecccc-------cccccCcchHHHHHHHHHHHcCCCEEEEE---ECCEEEEEEEHHHHHHHHH
Confidence            35689999998       89999999999999999999999999987   5689999999999999864

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.93  E-value=5.4e-10  Score=76.51  Aligned_cols=64  Identities=19%  Similarity=0.330  Sum_probs=53.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHcCCCCccCcccccc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIM  135 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~~~~~~~~~v~~im  135 (139)
                      +++++.+++|+.+|++.|.+++++++||+  |++++++|++|.+|+++.+........+.++.++|
T Consensus        13 ~vv~v~~~~~v~~a~~~m~~~~~~~lpVv--d~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~   76 (153)
T d2ooxe2          13 NLATASMETKVYDVIKMLAEKNISAVPIV--NSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEAL   76 (153)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHTTCSEEEEE--CGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHH
T ss_pred             CCeEEeCcCcHHHHHHHHHHcCcceEeee--cccceEEEEEEeeeeeehhccccccccccchhhhe
Confidence            68999999999999999999999999999  77899999999999988775443333345565555

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.93  E-value=4.3e-09  Score=71.86  Aligned_cols=66  Identities=21%  Similarity=0.301  Sum_probs=55.9

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.++|... ..+.+++.++.+++++.++++.|.+++++++||+  |++|+++|+||+.|+++++..
T Consensus        69 ~~~v~~~~~~~-~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv--d~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          69 DLSVGEALLKR-PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             GSBHHHHHHTS-CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEE--CTTCBEEEEEEHHHHHHHHHS
T ss_pred             ccchhhheeee-ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEE--cCCCEEEEEEEHHHHHHHHHc
Confidence            46788888652 2223367899999999999999999999999999  789999999999999998864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.93  E-value=7.1e-10  Score=74.85  Aligned_cols=57  Identities=14%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             cHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        55 ~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      .+.++|+.       +|+++.+++|+.+|++.|.+++++++||+  |++++++|+||..|+++.+.
T Consensus         5 ~v~~~m~~-------~p~~v~~~~~v~~a~~~m~~~~~~~ipVv--d~~~~~vGiis~~Dl~~~~~   61 (145)
T d1o50a3           5 DVCKLISL-------KPTVVEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKVSG   61 (145)
T ss_dssp             HHTTSSCC-------CCEEECTTCBHHHHHHHHHHSTTCCEEEE--EETTEEEEEEEHHHHHHHHH
T ss_pred             EhHHhCCC-------CCEEECCcCcHHHHHHHHHHcCCceEEEe--ccCcceeeeeccchhhhhhh
Confidence            35556777       89999999999999999999999999999  67899999999999988654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=1.6e-10  Score=78.07  Aligned_cols=49  Identities=22%  Similarity=0.412  Sum_probs=45.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ++.++.+++++.+|++.|.+++++++||+  |++|+++|+||.+|++++++
T Consensus        90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~VV--d~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          90 GVYTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEE--CTTSBEEEEEEHHHHHHHHH
T ss_pred             ccEEECCCCcHHHHHHHHHhcCeeEEEEE--eCCCeEEEEEEHHHHHHHHh
Confidence            67899999999999999999999999999  78999999999999999875

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=9.1e-10  Score=74.22  Aligned_cols=51  Identities=20%  Similarity=0.260  Sum_probs=47.3

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHHc
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQ  122 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~~  122 (139)
                      ++.++.+++|+.+|++.|.+++++++||+  |++++++|++|.+|+++.+...
T Consensus        18 ~v~tv~~~~~v~~a~~~m~~~~~~~ipVv--d~~~~~vG~it~~Di~~~~~~~   68 (140)
T d2nyca1          18 NMKSCQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAYDVLGLIKGG   68 (140)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEE--CTTCBEEEEEEHHHHHHHHHTC
T ss_pred             CCEEEcCcCcHHHHHHHHHHcCCcEEEEE--ecCCeEcceehhhHHHHHHhhc
Confidence            79999999999999999999999999999  7888999999999999877543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.89  E-value=3.9e-10  Score=74.59  Aligned_cols=58  Identities=17%  Similarity=0.309  Sum_probs=44.1

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRK  118 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~  118 (139)
                      .++.++|....     ++.++.+++++.+|+++|.+++++++||+  |++|+++||||.+||+++
T Consensus        61 ~~~~~~~~~~~-----~~~~v~~~~~~~~a~~~m~~~~i~~lpVV--d~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          61 RFLEEIMTKRE-----DLVVAPAGITLKEANEILQRSKKGKLPIV--NENDELVAIIARTDLKKN  118 (120)
T ss_dssp             -----CCSBTT-----TSCCEETTCCHHHHHHHTCSCC---CEEE--ETTTEEEEEECHHHHHHH
T ss_pred             ceeEEEEeecc-----CceEECCCCCHHHHHHHHHHcCccEEEEE--cCCCEEEEEEEHHHhhhc
Confidence            45566654422     68899999999999999999999999999  788999999999999875

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.89  E-value=2e-09  Score=71.49  Aligned_cols=48  Identities=19%  Similarity=0.306  Sum_probs=45.8

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++.+++++.+|+++|.+++++.+||+  |++|+++|+||.+|++++.
T Consensus        69 ~~~~~~~~~~l~~a~~~m~~~~~~~lpVV--d~~g~lvGiiT~~Dil~~~  116 (126)
T d1zfja4          69 HLVTAAVGTDLETAERILHEHRIEKLPLV--DNSGRLSGLITIKDIEKVI  116 (126)
T ss_dssp             CCCCEETTCCHHHHHHHHHHTTCSEEEEE--CTTSBEEEEEEHHHHHHHH
T ss_pred             ceeecCCCCCHHHHHHHHHhcCCcEEEEE--cCCCeEEEEEEHHHHHHHh
Confidence            68899999999999999999999999999  7899999999999999976

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=2.4e-09  Score=71.47  Aligned_cols=58  Identities=14%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             ccCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        52 ~~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ...+++++|.+       ++.++.+++++.++++.|.+++  .+||+  |++|+++|+||.+|+++++.
T Consensus        72 ~~~~v~~~m~~-------~~~~v~~~~~l~~~~~~~~~~~--~l~Vv--d~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          72 DQITVEEVMLT-------DIPRLHINDPIMKGFGMVINNG--FVCVE--NDEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             TTSBHHHHSBC-------SCCEEETTSBHHHHHHHTTTCS--EEEEE--CTTCBEEEEEEHHHHHHHHH
T ss_pred             ccccccccccc-------cccccccchhHHHHHHHHHhCC--EEEEE--ccCCEEEEEEEHHHHHHHHH
Confidence            35789999998       8999999999999999998765  59999  78999999999999999874

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=1.1e-09  Score=74.14  Aligned_cols=63  Identities=25%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++++++...    ..++.++.+++|+.+|++.|.+++++++||+  |++++++|++|..|+++.+..
T Consensus         8 ~~~l~~l~i~~----~~~v~~v~~~~tv~eal~~m~~~~~~~lpVv--d~~~~~~Gvit~~di~~~l~~   70 (145)
T d2v8qe1           8 SKSLEELQIGT----YANIAMVRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVINLAAE   70 (145)
T ss_dssp             GSBHHHHTCSB----CSSCCCEETTCBHHHHHHHHHHHCCSEEEEE--CTTSBEEEEEEGGGTGGGGGS
T ss_pred             hCCHHHHcCCC----CCCceEEcCcCcHHHHHHHHHHcCCCccccc--ccCCceEEEEEcchhhhhhhc
Confidence            35688876431    0168999999999999999999999999999  789999999999999877643

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=2.2e-09  Score=73.41  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=54.2

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.|+|.+..     +++++++++|+.+|++.|.+++++++||++ +++++++|++|.+|++..+..
T Consensus        12 ~~t~~Dlm~~~~-----~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~-~~~~~~vG~is~~Dl~~~~~~   74 (159)
T d2v8qe2          12 SHRCYDLIPTSS-----KLVVFDTSLQVKKAFFALVTNGVRAAPLWD-SKKQSFVGMLTITDFINILHR   74 (159)
T ss_dssp             HSBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSEEEEEE-TTTTEEEEEEEHHHHHHHHHH
T ss_pred             CCEEEeECCCCC-----ceEEEcCCCcHHHHHHHHHHcCCCceeEEE-CCCCcEEEEEEHHHHHHHHHh
Confidence            468999996632     578899999999999999999999999995 357899999999999887643

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.83  E-value=2.6e-09  Score=74.41  Aligned_cols=63  Identities=21%  Similarity=0.206  Sum_probs=54.3

Q ss_pred             cCcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHHH
Q 032532           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIV  121 (139)
Q Consensus        53 ~~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~~  121 (139)
                      ..++.|+|.+..     .++++++++++.+|++.|.+++++++||++ +++++++|++|..|+++.+..
T Consensus        19 ~~~~~dvm~~s~-----~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd-~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1          19 SRTSYDVLPTSF-----RLIVFDVTLFVKTSLSLLTLNNIVSAPLWD-SEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HSBHHHHSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSCEEEEE-TTTTEEEEEECHHHHHHHHHH
T ss_pred             CCEeeeeCCCCC-----cEEEEECcchHHHHHHHHHHcCCCeEEEEe-CCCCeeEEEEeechHHHHHHh
Confidence            468999997522     589999999999999999999999999994 256899999999999887653

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.79  E-value=4e-09  Score=70.01  Aligned_cols=48  Identities=27%  Similarity=0.341  Sum_probs=45.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKI  119 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~  119 (139)
                      ++.++.+++++.+|+++|.+++++++||+  |++|+++|+||..||++++
T Consensus        75 ~~~~v~~~~~~~~a~~~m~~~~i~~lpVv--d~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          75 SPITVLDTDPVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             CCCEEETTSBHHHHHHHHHHHTCSEEEEE--CTTSCEEEEEEHHHHHSCH
T ss_pred             cceeEeeecchHHHHHHHHHCCeEEEEEE--cCCCeEEEEEEHHHHHHHH
Confidence            68899999999999999999999999999  7899999999999998754

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=4.4e-09  Score=71.87  Aligned_cols=57  Identities=18%  Similarity=0.241  Sum_probs=49.6

Q ss_pred             HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHHHHH
Q 032532           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKII  120 (139)
Q Consensus        56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~~~~  120 (139)
                      ..++|.+       ++.++++++++.+|++.|.+++.+++||++ +++|+++||||.+||++++.
T Consensus        98 ~~~~~~~-------~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd-~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          98 YLQDSFK-------PLVCISPNASLFDAVSSLIRNKIHRLPVID-PESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             HSSSSCC-------CCCCBCTTSBHHHHHHHHHHHTCSCEEEEC-TTTCCEEEEECHHHHHHHHH
T ss_pred             eeeeecc-------ceEEECCCCcHHHHHHHHHHhCCeEEEEEE-CCCCeEEEEEeHHHHHHHHH
Confidence            4455655       789999999999999999999999999993 25689999999999999875

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.61  E-value=3.7e-10  Score=74.71  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=16.0

Q ss_pred             CcEEecCCCCHHHHHHHHHHcCCCEEEEEecC-CCCceEEEEeHHHHHH
Q 032532           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERDYLR  117 (139)
Q Consensus        70 ~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d-~~~~lvGivt~~dll~  117 (139)
                      +|+++.+++|+.+|+++|.+++++++||++++ .+++++|+||.+|+..
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~   53 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDF   53 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC----------
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeee
Confidence            78999999999999999999999999999411 3679999999999854

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.58  E-value=2.6e-08  Score=69.14  Aligned_cols=58  Identities=10%  Similarity=0.198  Sum_probs=49.0

Q ss_pred             HHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecC---CCCceEEEEeHHHHHHHHH
Q 032532           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG---EQKSVAGIITERDYLRKII  120 (139)
Q Consensus        56 v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d---~~~~lvGivt~~dll~~~~  120 (139)
                      +..+|.+       +++++.+++++.+|++.|.+++++++||++++   .+++++||+|.+||++.+.
T Consensus       109 ~~~~~~~-------~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1         109 KIGAIPP-------ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             HTTCSCS-------SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             eeeeccc-------CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            4445666       78999999999999999999999999999522   1347999999999999875

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=91.76  E-value=0.00027  Score=49.43  Aligned_cols=55  Identities=7%  Similarity=0.017  Sum_probs=48.0

Q ss_pred             CcHHHHhhhcCCCCCCCcEEecCCCCHHHHHHHHHHcCCCEEEEEecCCCCceEEEEeHHHHHH
Q 032532           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLR  117 (139)
Q Consensus        54 ~~v~dvm~~~~~~~~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVv~~d~~~~lvGivt~~dll~  117 (139)
                      ..+.++|..       .+.++..+++-..+.+++.++.....||+  +++++++|.||.+|+..
T Consensus       137 ~~l~~i~~~-------~~~~a~~~~~~e~~~~~l~~~~~~~~~vv--~~e~~~~G~I~~~Die~  191 (213)
T d1lkvx_         137 LVLREVDTR-------DLALALKGASDELKEKIFKNMSKRAAALL--KDELEYMGPVRLKDVEE  191 (213)
T ss_dssp             HHHTTSCHH-------HHHHHHTTCCHHHHHHHHTTSCHHHHHHH--HHHHHSCCCCCHHHHHH
T ss_pred             HHHHHhhhh-------hheeehhcCCHHHHHHHHHhCCHHHHHHH--HHhhhhcCCCcHHHHHH
Confidence            456777777       67888899999999999999999999999  68899999999999743

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.28  E-value=0.15  Score=28.64  Aligned_cols=32  Identities=3%  Similarity=-0.023  Sum_probs=29.4

Q ss_pred             hHHHHHhhcCCCchHHHHhhhCCccccccchh
Q 032532            3 GAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVV   34 (139)
Q Consensus         3 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~d~   34 (139)
                      +|++++..+..+++.++++.+++++.+++.+.
T Consensus         9 ~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i   40 (63)
T d1biaa1           9 KLIALLANGEFHSGEQLGETLGMSRAAINKHI   40 (63)
T ss_dssp             HHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHCCcCCHHHHHHHHCcCHHHHHHHH
Confidence            68999999999999999999999999888776

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.51  E-value=0.3  Score=27.31  Aligned_cols=35  Identities=0%  Similarity=0.104  Sum_probs=29.2

Q ss_pred             hhHHHHHhhc-CCCchHHHHhhhCCccccccchhhh
Q 032532            2 QGAIQSFLSH-GNIVKSAVLQRIRLVNPMLRPVVSS   36 (139)
Q Consensus         2 ~~~~~~~~~~-~~i~~~~v~~~~~~~~~~~~~d~~~   36 (139)
                      .+|+++++.. +.++...+++.++++..+++.|+..
T Consensus        10 ~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~   45 (65)
T d1j5ya1          10 KSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAY   45 (65)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHH
Confidence            4688888765 5699999999999999998888743