Citrus Sinensis ID: 032539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MAKYQLAGLLILLLNLGTLLPSLASDCSNPPSVPKTPSSPSPKPKPPSKQQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGFKCPT
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHEHHHHcccEEEEccccccccccHHHHHHHcHHHHHHHHHHHHHHHHcHEEccccHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MAKYQLAGLLILLLNLGtllpslasdcsnppsvpktpsspspkpkppskqqtcpidalklsACVDVLGGLIhvgiggnpkekccpllqGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVndcgkhvpagfkcpt
Flexible Loop (DISEMBL)
MAKYQLAGLLILLLNLGTLLPSLASDCSNPPSVPKTpsspspkpkppSKQQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNdcgkhvpagfkcpt
Low Complexity Region (SEG)
MAKYQlagllilllnlgtllpslASDCsnppsvpktpsspspkpkppskQQTCPIDALKLSACVDvlgglihvgiggNPKEKCCPLLQGLADLDAAICLCTAIRLKAlnlvnllvpvslnvlvnDCGKHVPAGFKCPT
Disordered region (IsUnstruct)
****************************************************CPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGF****
Disordered Region (DISOPRED)
******A***ILLLNLGTLLPSLASDCS****************************ALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGFKCP*
Disordered Region (DISEMBL)
MAKYQLAGLLILLLNLGTLLPSLASD*************************TCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGFKCPT
Disordered Region (DISPRO)
****QLAGLLILLLNLGTLLPSLASDCSNPPSVPKT*SSPSP********QTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGFKCPT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKYQLAGLLILLLNLGTLLPSLASDCSNPPSVPKTPSSPSPKPKPPSKQQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGFKCPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q00451	346	36.4 kDa proline-rich pro	N/A	no	0.637	0.254	0.707	8e-23
Q8RW93	128	Putative lipid-binding pr	no	no	0.681	0.734	0.484	4e-18
Q01595	129	Cortical cell-delineating	N/A	no	0.630	0.674	0.527	9e-17
P14009	137	14 kDa proline-rich prote	N/A	no	0.601	0.605	0.523	5e-16
P24337	80	Hydrophobic seed protein	no	no	0.5	0.862	0.367	2e-06

>sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 76/89 (85%), Gaps = 1/89 (1%)

Query: 50  QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
           Q TCPIDALKL ACVDVLGGLIH+GIGG+ K+ CCPLL GL DLDAAICLCT IRLK LN
Sbjct: 258 QPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLN 317

Query: 110 LVNLLVPVSLNVLVNDCGKHVPAGFKCPT 138
            +N+++P++L VL++DCGK+ P  FKCP+
Sbjct: 318 -INIILPIALQVLIDDCGKYPPKDFKCPS 345

Solanum lycopersicum (taxid: 4081)

>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 3/97 (3%)

Query: 42  PKPKPPSKQQT--CPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICL 99
           P P PP+KQ T  CP D LK   C   LG L+   IG  P ++CC L++GLAD +AA+CL
Sbjct: 33  PCPPPPAKQATTKCPRDTLKFGVCGSWLG-LVSEVIGTPPSQECCSLIKGLADFEAAVCL 91

Query: 100 CTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGFKC 136
           CTA++   L +  + +PV+L +L+N CGK+VP GF C
Sbjct: 92  CTALKTSILGVAPVKIPVALTLLLNSCGKNVPQGFVC 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays PE=2 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 48  SKQQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKA 107
                CPIDALKL  C  VLG L+ VG+     E+CCPLL+GL DLDAA+CLCTAI+   
Sbjct: 43  HSHGRCPIDALKLKVCAKVLG-LVKVGLP--QYEQCCPLLEGLVDLDAALCLCTAIKANV 99

Query: 108 LNLVNLLVPVSLNVLVNDCGKHVPAGFKCPT 138
           L  ++L VP+SLN ++N+CG+  P  F CP 
Sbjct: 100 LG-IHLNVPLSLNFILNNCGRICPEDFTCPN 129

Delineates a novel subset of developing cortical cells. It is probably involved in some aspect of transport of molecules to or from the vasculature.

Zea mays (taxid: 4577)

>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 1/84 (1%)

Query: 53  CPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVN 112
           CP DALKL  C DVL  + +V IG  P   CC LL+GL +L+AA+CLCTAI+   L   N
Sbjct: 54  CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILG-KN 112

Query: 113 LLVPVSLNVLVNDCGKHVPAGFKC 136
           L +P++L++++N+CGK VP GF+C
Sbjct: 113 LNLPIALSLVLNNCGKQVPNGFEC 136

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.

Daucus carota (taxid: 4039)

>sp|P24337|HPSE_SOYBN Hydrophobic seed protein OS=Glycine max PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 10/79 (12%)

Query: 59  KLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVS 118
            LS C+++LGG +         + CC L+ GL D++A +CLC  I+L+AL ++NL    +
Sbjct: 10  DLSICLNILGGSLGT------VDDCCALIGGLGDIEAIVCLC--IQLRALGILNL--NRN 59

Query: 119 LNVLVNDCGKHVPAGFKCP 137
           L +++N CG+  P+   CP
Sbjct: 60  LQLILNSCGRSYPSNATCP 78

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
145332667	1480	bifunctional inhibitor/lipid transfer pr	0.623	0.058	0.613	1e-27
297835204	722	predicted protein [Arabidopsis lyrata su	0.637	0.121	0.633	2e-27
15022163	407	putative proline-rich protein [Solanum p	0.630	0.213	0.674	3e-27
449456667	254	PREDICTED: uncharacterized protein LOC10	0.630	0.342	0.662	3e-26
224104875	179	predicted protein [Populus trichocarpa]	0.630	0.486	0.674	4e-26
449518449	143	PREDICTED: 36.4 kDa proline-rich protein	0.630	0.608	0.662	4e-26
118486411	179	unknown [Populus trichocarpa]	0.630	0.486	0.674	5e-26
296087554	135	unnamed protein product [Vitis vinifera]	0.623	0.637	0.670	1e-25
359475712	310	PREDICTED: uncharacterized protein LOC10	0.623	0.277	0.670	1e-25
255559090	299	Repetitive proline-rich cell wall protei	0.630	0.290	0.674	1e-25

>gi|145332667|ref|NP_001078199.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana] gi|11994733|dbj|BAB03062.1| unnamed protein product [Arabidopsis thaliana] gi|332643072|gb|AEE76593.1| bifunctional inhibitor/lipid transfer protein/seed storage protein-like protein [Arabidopsis thaliana]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 74/88 (84%), Gaps = 2/88 (2%)

Query: 50   QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
             +TCPID LKL +CVD+LGGL+H+GIG + KEKCCP+++GL DLDAA+CLCT I+ K LN
Sbjct: 1394 PKTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTIKAKLLN 1453

Query: 110  LVNLLVPVSLNVLVNDCGKHVPAGFKCP 137
            + ++++P++L VL+N CGK+ P GFKCP
Sbjct: 1454 I-DVILPIALEVLLN-CGKNPPPGFKCP 1479

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835204|ref|XP_002885484.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331324|gb|EFH61743.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/90 (63%), Positives = 73/90 (81%), Gaps = 2/90 (2%)

Query: 49  KQQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKAL 108
           K +TCPID LKL +CVDVLGGL+H+GIG + K+KCCP+L+GL DLDAA+CLCT I+ K L
Sbjct: 473 KPKTCPIDTLKLGSCVDVLGGLVHIGIGQSAKQKCCPVLEGLVDLDAAVCLCTTIKAKLL 532

Query: 109 NLVNLLVPVSLNVLVNDCGKHVPAGFKCPT 138
           N ++L+ P++L VL+  CGK  P GFKCPT
Sbjct: 533 N-IDLVFPIALEVLLG-CGKKPPPGFKCPT 560

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15022163|gb|AAC49600.2| putative proline-rich protein [Solanum palustre]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 50  QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
           Q TCPIDAL + ACVDVLGGLIH+G GG+ K+ CCPLL GL DLDAAICLCT IRLK LN
Sbjct: 320 QPTCPIDALNVGACVDVLGGLIHIGTGGSAKQTCCPLL-GLVDLDAAICLCTTIRLKLLN 378

Query: 110 LVNLLVPVSLNVLVNDCGKHVPAGFKCPT 138
            +N+++P++L VL++DCGK+ P  FKCP+
Sbjct: 379 -INIILPIALQVLIDDCGKYPPKDFKCPS 406

Source: Solanum palustre

Species: Solanum palustre

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456667|ref|XP_004146070.1| PREDICTED: uncharacterized protein LOC101218239 [Cucumis sativus]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 75/89 (84%), Gaps = 2/89 (2%)

Query: 49  KQQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKAL 108
           K++TCPID LKL ACVD+LGGLIH+GIG   K+ CCP+L+GL DLDAA+CLCT I+ K L
Sbjct: 166 KRETCPIDTLKLGACVDLLGGLIHIGIGDRTKQTCCPVLEGLVDLDAAVCLCTTIKAKLL 225

Query: 109 NLVNLLVPVSLNVLVNDCGKHVPAGFKCP 137
           N +NL++P++L VLV DCGKH P+GF+CP
Sbjct: 226 N-INLIIPIALQVLV-DCGKHPPSGFQCP 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104875|ref|XP_002333889.1| predicted protein [Populus trichocarpa] gi|222838950|gb|EEE77301.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 76/89 (85%), Gaps = 2/89 (2%)

Query: 50  QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
           Q+TCPID LKL ACVDVLGGLIH+GIG + K++CCPLL+GL DLDAA+CLCT I+ K LN
Sbjct: 93  QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN 152

Query: 110 LVNLLVPVSLNVLVNDCGKHVPAGFKCPT 138
            +NL++P++L +LV DCGK+ P GFKCP+
Sbjct: 153 -INLILPIALELLV-DCGKNPPEGFKCPS 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518449|ref|XP_004166254.1| PREDICTED: 36.4 kDa proline-rich protein-like, partial [Cucumis sativus]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 75/89 (84%), Gaps = 2/89 (2%)

Query: 49  KQQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKAL 108
           K++TCPID LKL ACVD+LGGLIH+GIG   K+ CCP+L+GL DLDAA+CLCT I+ K L
Sbjct: 55  KRETCPIDTLKLGACVDLLGGLIHIGIGDRTKQTCCPVLEGLVDLDAAVCLCTTIKAKLL 114

Query: 109 NLVNLLVPVSLNVLVNDCGKHVPAGFKCP 137
           N +NL++P++L VLV DCGKH P+GF+CP
Sbjct: 115 N-INLIIPIALQVLV-DCGKHPPSGFQCP 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486411|gb|ABK95045.1| unknown [Populus trichocarpa]

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 2/89 (2%)

Query: 50  QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
           Q+TCPID LKL ACVDVLGGLIH+GIG + K++CCPLL+GL DLDAA+CLCT I+ K LN
Sbjct: 93  QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDECCPLLEGLVDLDAAVCLCTVIKAKLLN 152

Query: 110 LVNLLVPVSLNVLVNDCGKHVPAGFKCPT 138
            +NL++P++L +LV DCGK  P GFKCP+
Sbjct: 153 -INLILPIALELLV-DCGKTPPEGFKCPS 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087554|emb|CBI34143.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 75/88 (85%), Gaps = 2/88 (2%)

Query: 50  QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
           QQTCPID LKL ACVD+LGGL+H+GIG + K+ CCP+LQGL DLDAA+CLCTAI++K LN
Sbjct: 49  QQTCPIDTLKLGACVDLLGGLVHIGIGSSAKDTCCPVLQGLVDLDAAVCLCTAIKVKLLN 108

Query: 110 LVNLLVPVSLNVLVNDCGKHVPAGFKCP 137
            VN+++P++L VLV  CGK  P+GF+CP
Sbjct: 109 -VNIIIPIALQVLVG-CGKTPPSGFQCP 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475712|ref|XP_003631735.1| PREDICTED: uncharacterized protein LOC100233114 [Vitis vinifera]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 75/88 (85%), Gaps = 2/88 (2%)

Query: 50  QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
           QQTCPID LKL ACVD+LGGL+H+GIG + K+ CCP+LQGL DLDAA+CLCTAI++K LN
Sbjct: 224 QQTCPIDTLKLGACVDLLGGLVHIGIGSSAKDTCCPVLQGLVDLDAAVCLCTAIKVKLLN 283

Query: 110 LVNLLVPVSLNVLVNDCGKHVPAGFKCP 137
            VN+++P++L VLV  CGK  P+GF+CP
Sbjct: 284 -VNIIIPIALQVLVG-CGKTPPSGFQCP 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559090|ref|XP_002520567.1| Repetitive proline-rich cell wall protein 2 precursor, putative [Ricinus communis] gi|223540227|gb|EEF41800.1| Repetitive proline-rich cell wall protein 2 precursor, putative [Ricinus communis]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 50  QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
           Q+TCPID LKL ACVDVLGGLIH+GIG + K+ CCP+LQGL DLDAA+CLCT I+ K LN
Sbjct: 213 QETCPIDTLKLGACVDVLGGLIHIGIGSSAKDACCPVLQGLVDLDAALCLCTTIKAKLLN 272

Query: 110 LVNLLVPVSLNVLVNDCGKHVPAGFKCPT 138
           L N+++P++L VLV DCGK+ P GF+CP 
Sbjct: 273 L-NIIIPIALEVLV-DCGKNPPPGFQCPA 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:4010713767	1480	AT3G22142 "AT3G22142" [Arabido	0.615	0.057	0.459	5e-15
TAIR|locus:2090419	334	CWLP "cell wall-plasma membran	0.615	0.254	0.454	1.6e-14
TAIR|locus:2203876	297	AT1G62500 [Arabidopsis thalian	0.615	0.286	0.460	3.3e-14
TAIR|locus:2041927	291	AT2G10940 [Arabidopsis thalian	0.601	0.285	0.411	9.9e-13
TAIR|locus:2050901	134	AT2G45180 [Arabidopsis thalian	0.601	0.619	0.411	3.9e-12
TAIR|locus:2135595	161	AZI1 "azelaic acid induced 1"	0.608	0.521	0.364	8.2e-12
TAIR|locus:2135610	168	EARLI1 "EARLY ARABIDOPSIS ALUM	0.601	0.494	0.380	1e-11
TAIR|locus:2203886	149	AT1G62510 [Arabidopsis thalian	0.594	0.550	0.423	1.7e-11
TAIR|locus:2135545	129	AT4G12510 [Arabidopsis thalian	0.608	0.651	0.376	4.5e-11
TAIR|locus:2135555	129	AT4G12520 [Arabidopsis thalian	0.608	0.651	0.376	4.5e-11

TAIR|locus:4010713767 AT3G22142 "AT3G22142" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 40/87 (45%), Positives = 49/87 (56%)

Query:    51 QTCPIDALKLSACVDXXXXXXXXXXXXNPKEKCCPLLQGLADLDAAICLCTAIRLKAXXX 110
             +TCPID LKL +CVD            + KEKCCP+++GL DLDAA+CLCT I  KA   
Sbjct:  1395 KTCPIDTLKLGSCVDLLGGLVHIGIGKSAKEKCCPVVEGLVDLDAAVCLCTTI--KAKLL 1452

Query:   111 XXXXXXXXXXXXXXDCGKHVPAGFKCP 137
                           +CGK+ P GFKCP
Sbjct:  1453 NIDVILPIALEVLLNCGKNPPPGFKCP 1479

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

TAIR|locus:2090419 CWLP "cell wall-plasma membrane linker protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 40/88 (45%), Positives = 47/88 (53%)

Query:    51 QTCPIDALKLSACVDXXXXXXXXXXX-XNPKEKCCPLLQGLADLDAAICLCTAIRLKAXX 109
             +TCPID LKL ACVD             + K +CCP+L GL DLDAA+CLCT I+LK   
Sbjct:   248 ETCPIDTLKLGACVDVLGGLIHIGLGKSHAKAECCPVLGGLLDLDAAVCLCTTIKLKLLN 307

Query:   110 XXXXXXXXXXXXXXXDCGKHVPAGFKCP 137
                            DCGK  P+ FKCP
Sbjct:   308 IDLVLPIALELLL--DCGKTPPSDFKCP 333

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2203876 AT1G62500 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 41/89 (46%), Positives = 48/89 (53%)

Query:    50 QQTCPIDALKLSACVDXXXXXXXXXXXXNPKEK-CCPLLQGLADLDAAICLCTAIRLKAX 108
             Q TCPI+ALKL ACVD            NP E  CCP+LQGL +L+AA+CLCT IRLK  
Sbjct:   209 QPTCPINALKLGACVDVLGGLIHIGLG-NPVENVCCPVLQGLLELEAAVCLCTTIRLKLL 267

Query:   109 XXXXXXXXXXXXXXXXDCGKHVPAGFKCP 137
                              CG + P+GF CP
Sbjct:   268 NLNIFIPLALQALIT--CGINPPSGFVCP 294

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2041927 AT2G10940 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 9.9e-13, P = 9.9e-13
 Identities = 35/85 (41%), Positives = 43/85 (50%)

Query:    52 TCPIDALKLSACVDXXXXXXXXXXXXNPKEKCCPLLQGLADLDAAICLCTAIRLKAXXXX 111
             TCPID LKL ACVD                KCCPLL+GL +++AA CLCT ++LKA    
Sbjct:   207 TCPIDTLKLGACVDLLGGLVKIGLGDPAVNKCCPLLKGLVEVEAAACLCTTLKLKALDLN 266

Query:   112 XXXXXXXXXXXXXDCGKHVPAGFKC 136
                           CGK+ P G+ C
Sbjct:   267 LYVPVALQLLLT--CGKNPPPGYTC 289

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2050901 AT2G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 35/85 (41%), Positives = 41/85 (48%)

Query:    52 TCPIDALKLSACVDXXXXXXXXXXXXNPKEKCCPLLQGLADLDAAICLCTAIRLKAXXXX 111
             TCP D LKL  C D             PK  CC LLQGLA+L+AA+CLCTA++       
Sbjct:    51 TCPTDTLKLGVCADLLGLVNVVVGSP-PKTPCCTLLQGLANLEAAVCLCTALKANVLGIN 109

Query:   112 XXXXXXXXXXXXXDCGKHVPAGFKC 136
                           CGK VP GF+C
Sbjct:   110 LNVPIDLTLLLNY-CGKKVPHGFQC 133

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2135595 AZI1 "azelaic acid induced 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 31/85 (36%), Positives = 42/85 (49%)

Query:    52 TCPIDALKLSACVDXXXXXXXXXXXXNPKEKCCPLLQGLADLDAAICLCTAIRLKAXXXX 111
             +CPIDALKL  C +               ++CC L+QGL D+DAAICLCTA+R       
Sbjct:    77 SCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLGIN 136

Query:   112 XXXXXXXXXXXXXDCGKHVPAGFKC 136
                           C + +P+GF+C
Sbjct:   137 LNVPISLSVLLNV-CNRKLPSGFQC 160

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135610 EARLI1 "EARLY ARABIDOPSIS ALUMINUM INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 32/84 (38%), Positives = 40/84 (47%)

Query:    53 CPIDALKLSACVDXXXXXXXXXXXXNPKEKCCPLLQGLADLDAAICLCTAIRLKAXXXXX 112
             CPIDAL+L  C +               + CC L+QGL DLDAAICLCTA+R        
Sbjct:    85 CPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGINL 144

Query:   113 XXXXXXXXXXXXDCGKHVPAGFKC 136
                          C + VP+GF+C
Sbjct:   145 NVPISLSVLLNV-CNRKVPSGFQC 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2203886 AT1G62510 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 36/85 (42%), Positives = 41/85 (48%)

Query:    53 CPIDALKLSACVDXXXXXXXXXXXXNPKEKCCPLLQGLADLDAAICLCTAIRLKAXXXXX 112
             CP DALKL  C +             P E CC L+QGLADL+AA CLCTA  LKA     
Sbjct:    67 CPRDALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQGLADLEAAACLCTA--LKANILGI 124

Query:   113 XXXXXXXXXXXXD-CGKHVPAGFKC 136
                         + C K VP GF+C
Sbjct:   125 NLNIPLSLSLLLNVCSKKVPRGFQC 149

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135545 AT4G12510 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/85 (37%), Positives = 39/85 (45%)

Query:    52 TCPIDALKLSACVDXXXXXXXXXXXXNPKEKCCPLLQGLADLDAAICLCTAIRLKAXXXX 111
             +CP D LKL  C +             P + CC LL GL DL+AA CLCTA++ K     
Sbjct:    45 SCPKDTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGIN 104

Query:   112 XXXXXXXXXXXXXDCGKHVPAGFKC 136
                           CGK VP+GF C
Sbjct:   105 LNVPVSLSLLLNV-CGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135555 AT4G12520 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 32/85 (37%), Positives = 39/85 (45%)

Query:    52 TCPIDALKLSACVDXXXXXXXXXXXXNPKEKCCPLLQGLADLDAAICLCTAIRLKAXXXX 111
             +CP D LKL  C +             P + CC LL GL DL+AA CLCTA++ K     
Sbjct:    45 SCPKDTLKLGVCANVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGIN 104

Query:   112 XXXXXXXXXXXXXDCGKHVPAGFKC 136
                           CGK VP+GF C
Sbjct:   105 LNVPVSLSLLLNV-CGKKVPSGFVC 128

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0003_2365 annotation not avaliable (722 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
cd01958	85	cd01958, HPS_like, HPS_like: Hydrophobic Protein f	3e-27
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	1e-10
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	0.002

>gnl|CDD|238924 cd01958, HPS_like, HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

 Score = 96.2 bits (240), Expect = 3e-27
 Identities = 44/86 (51%), Positives = 62/86 (72%), Gaps = 2/86 (2%)

Query: 51  QTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNL 110
            TCP DALKL  C +VLG  + + +G    + CCPL+ GLADLDAA+CLCTAI+   L  
Sbjct: 2   PTCPRDALKLGVCANVLGLSLLL-LGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG- 59

Query: 111 VNLLVPVSLNVLVNDCGKHVPAGFKC 136
           +++ +PV+L++L+N CG++VP GF C
Sbjct: 60  ISINIPVALSLLLNSCGRNVPPGFTC 85

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells. Length = 85

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 53  CPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVN 112
           C    LKL+ C   L G   V     P ++CC  L+ L     A C CTAIR   L  + 
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQV-----PSQQCCSQLRQLQ----AQCRCTAIRAIVLG-IE 50

Query: 113 LLVPVSLNVLVNDCGKHVPAGFKC 136
            + P +   L + CG +VP G  C
Sbjct: 51  GINPQAAASLPSMCGVNVPYGIDC 74

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 53  CPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN--L 110
           C    L+L+ C+  L G      G  P ++CC  L+GL     A C C A+R   L    
Sbjct: 1   CGQVLLQLAPCLSYLVG---GSRGAPPSQQCCSQLRGLNS---AQCRCLALRAAVLGILE 54

Query: 111 VNLLVPVSLNVLVNDCGKHVP 131
           +  L   +   L + CG   P
Sbjct: 55  IPGLNAQNAASLPSACGVPPP 75

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	100.0
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	100.0
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	96.14
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	96.07
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	95.43
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	94.17
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	89.29
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	89.15
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	88.23

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=100.00  E-value=1.3e-36  Score=216.26  Aligned_cols=85  Identities=60%  Similarity=1.217  Sum_probs=83.2

Q ss_pred             CCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539           52 TCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP  131 (138)
Q Consensus        52 ~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P  131 (138)
                      +||+|++||++|+||| |++++.+|.|++++||++|+||+|+|||+|||+|+|+|+||+|++++|+++++++|.|||++|
T Consensus         1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p   79 (85)
T PF14547_consen    1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP   79 (85)
T ss_pred             CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence            6999999999999999 699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCC
Q 032539          132 AGFKCP  137 (138)
Q Consensus       132 ~gf~C~  137 (138)
                      +||+|+
T Consensus        80 ~gf~C~   85 (85)
T PF14547_consen   80 SGFTCP   85 (85)
T ss_pred             CCCcCC
Confidence            999996

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=100.00  E-value=1.2e-36  Score=216.62  Aligned_cols=84  Identities=54%  Similarity=1.099  Sum_probs=81.7

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCC
Q 032539           51 QTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHV  130 (138)
Q Consensus        51 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~  130 (138)
                      ++||+|++|||+|+|||+ ++++.+|+++.++||++|+||+|+|||+|||||||+|+|| |++|+|+++++++|.|||++
T Consensus         2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~   79 (85)
T cd01958           2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNV   79 (85)
T ss_pred             CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcC
Confidence            589999999999999995 8899999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCCCcC
Q 032539          131 PAGFKC  136 (138)
Q Consensus       131 P~gf~C  136 (138)
                      |+||+|
T Consensus        80 P~gf~C   85 (85)
T cd01958          80 PPGFTC   85 (85)
T ss_pred             CCCCcC
Confidence            999998

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=96.14  E-value=0.0011  Score=42.77  Aligned_cols=74  Identities=31%  Similarity=0.635  Sum_probs=48.2

Q ss_pred             ccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhcccee---eeccchhhHhhhhcCCCCC
Q 032539           55 IDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVN---LLVPVSLNVLVNDCGKHVP  131 (138)
Q Consensus        55 ~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~---~~ipv~l~llln~CGk~~P  131 (138)
                      ....++..|.+.+.+..   ....+.++||..++++.   ...|+|.+++..+.+.+.   ++.. ....|.+.||...|
T Consensus         3 ~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~~~-~a~~lp~~C~~~~~   75 (79)
T smart00499        3 QVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVNAQ-NAASLPSACGVPPP   75 (79)
T ss_pred             hhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhhHH-HHHhhHHhcCCCCC
Confidence            33445556766553211   12346788999999887   677999999988766221   2333 45568889999887


Q ss_pred             CCCcC
Q 032539          132 AGFKC  136 (138)
Q Consensus       132 ~gf~C  136 (138)
                      . +.|
T Consensus        76 ~-~~C   79 (79)
T smart00499       76 Y-TDC   79 (79)
T ss_pred             C-CCC
Confidence            5 544

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=96.07  E-value=0.00029  Score=48.46  Aligned_cols=56  Identities=30%  Similarity=0.651  Sum_probs=34.1

Q ss_pred             CCCCCCCCcccccccccchhhhhHHHHhhhh-ccceeeeccchhhHhhhhcCCCCCCCCcC
Q 032539           77 GNPKEKCCPLLQGLADLDAAICLCTAIRLKA-LNLVNLLVPVSLNVLVNDCGKHVPAGFKC  136 (138)
Q Consensus        77 ~p~~~~CC~li~gL~d~dAA~CLCtAiKanv-Lg~i~~~ipv~l~llln~CGk~~P~gf~C  136 (138)
                      ..+.+.||.-++.+.+.| ..|||..++... .+ +++|..-.+ .|...||...|. ++|
T Consensus        40 ~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~-~~in~~~a~-~Lp~~Cg~~~~~-~~C   96 (96)
T PF14368_consen   40 PAPSAACCSALKSVVQAD-PPCLCQLLNSPGAPG-FGINVTRAL-ALPAACGVPVPP-SKC   96 (96)
T ss_dssp             ----HHHHHHHCC----H-CCHHHCCCC-CCHCH-HCCTCHHHH-HHHHHCTSS-S-----
T ss_pred             CCCCHHHHHHHHHhccCC-CCCHHHhcCcccccc-CCcCHHHHH-HHHHHcCCCCCC-CCC
Confidence            457788999999997744 999999999987 44 556655445 478899999998 877

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=95.43  E-value=0.0015  Score=44.30  Aligned_cols=63  Identities=25%  Similarity=0.552  Sum_probs=46.5

Q ss_pred             ccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCCC
Q 032539           57 ALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPA  132 (138)
Q Consensus        57 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P~  132 (138)
                      ..+|..|.....      .|.++.++||..+..     +.-|||.-+|...|+ .-||.+-+.+ |.+.||..+|.
T Consensus         3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~~A~~-l~~~Cgv~~P~   65 (66)
T cd01959           3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSPNARK-VLAACGVPYPN   65 (66)
T ss_pred             hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcHHHHH-HHHHcCCCCCC
Confidence            347888887542      356788999999996     237999999887666 3455666555 78899999863

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=94.17  E-value=0.0084  Score=40.57  Aligned_cols=68  Identities=25%  Similarity=0.460  Sum_probs=45.1

Q ss_pred             cCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCCCCCcC
Q 032539           58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPAGFKC  136 (138)
Q Consensus        58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P~gf~C  136 (138)
                      ..|..|...+.+   -.-..++.+.||+-|+.+   |. .|+|..++...+..  ||..- ...|...||..+|. ++|
T Consensus         6 ~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~--i~~~~-a~~Lp~~Cgv~~p~-~~C   73 (73)
T cd04660           6 DLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI--IDPDK-AVYLPAKCGLPLPP-SSC   73 (73)
T ss_pred             HHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc--cCHHH-HHHHHHHcCCCCCC-CCC
Confidence            356667665521   000113567799999974   32 39999999876652  44443 44588999999999 887

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=89.29  E-value=0.037  Score=37.80  Aligned_cols=68  Identities=28%  Similarity=0.609  Sum_probs=46.6

Q ss_pred             cCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccce----------eeeccchhhHhhhhcC
Q 032539           58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLV----------NLLVPVSLNVLVNDCG  127 (138)
Q Consensus        58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i----------~~~ipv~l~llln~CG  127 (138)
                      ..+..|...+.+-    - ..+.+.||.-|++|    -..|.|.+||..+.+++          .++.. ...-|.+.||
T Consensus        13 ~~l~~c~~~~~~~----~-~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C~   82 (90)
T PF00234_consen   13 VRLSPCLPYLQGG----C-QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMCN   82 (90)
T ss_dssp             SHHHGGHHHHTTS----S-SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHTT
T ss_pred             ccccccHHHHhcc----c-ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHCC
Confidence            4466676655321    1 13557799999988    88999999999987721          34443 3555888999


Q ss_pred             CCCCCCCcC
Q 032539          128 KHVPAGFKC  136 (138)
Q Consensus       128 k~~P~gf~C  136 (138)
                      ..+|. |.|
T Consensus        83 v~~~~-~~C   90 (90)
T PF00234_consen   83 VSPPY-TDC   90 (90)
T ss_dssp             SSSSS-S-G
T ss_pred             CCCCC-CCC
Confidence            99887 555

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=89.15  E-value=0.38  Score=34.85  Aligned_cols=6  Identities=33%  Similarity=0.362  Sum_probs=4.7

Q ss_pred             Cchhhh
Q 032539            1 MAKYQL    6 (138)
Q Consensus         1 Ma~~~~    6 (138)
                      ||||++
T Consensus         1 MaSK~~    6 (95)
T PF07172_consen    1 MASKAF    6 (95)
T ss_pred             CchhHH
Confidence            998863

Some of them may be involved in resistance to environmental stress [].

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=88.23  E-value=0.11  Score=33.37  Aligned_cols=48  Identities=29%  Similarity=0.602  Sum_probs=31.5

Q ss_pred             CCCCCCCcccccccccchhhhhHHHHhhhhccceee-eccchhhHhhhhcC
Q 032539           78 NPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNL-LVPVSLNVLVNDCG  127 (138)
Q Consensus        78 p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~-~ipv~l~llln~CG  127 (138)
                      .+.++||.-++.+.+.| ..|||..+|........+ |.. ....|.+.||
T Consensus        14 ~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~~-~a~~LP~~Cg   62 (63)
T cd00010          14 APPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNAT-RALALPAACG   62 (63)
T ss_pred             CCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccHH-HHHhchHhcC
Confidence            46788999999887664 469999999866431111 222 2334666776

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	7e-21

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Length = 80

 Score = 79.5 bits (196), Expect = 7e-21
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 14/89 (15%)

Query: 50  QQTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALN 109
           + +CP     LS C+++LGG +         + CC L+ GL D++A +CLC  +R   + 
Sbjct: 5   RPSCP----DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLRALGI- 53

Query: 110 LVNLLVPVSLNVLVNDCGKHVPAGFKCPT 138
              L +  +L +++N CG+  P+   CP 
Sbjct: 54  ---LNLNRNLQLILNSCGRSYPSNATCPR 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	99.96
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	95.18
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	94.2
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	93.13
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	87.75
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	85.03
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	84.06
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	83.06

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=99.96  E-value=6.3e-31  Score=184.40  Aligned_cols=74  Identities=41%  Similarity=1.040  Sum_probs=66.7

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCC
Q 032539           51 QTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHV  130 (138)
Q Consensus        51 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~  130 (138)
                      ++||    |||+|+|||||++    |  +.++||++|+||+|+|||+|||||||  +|| | +|+|+++++|+|.|||++
T Consensus         6 ~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lg-i-lnlpv~L~llln~Cgk~~   71 (80)
T 1hyp_A            6 PSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALG-I-LNLNRNLQLILNSCGRSY   71 (80)
T ss_dssp             CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHT-C-SCHHHHHHHHHHHTTCSS
T ss_pred             CCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccc-e-eecChhHHHHHHHhCCcC
Confidence            4799    8999999997543    2  56789999999999999999999999  489 7 889999999999999999


Q ss_pred             CCCCcCCC
Q 032539          131 PAGFKCPT  138 (138)
Q Consensus       131 P~gf~C~~  138 (138)
                      |+||+|+.
T Consensus        72 P~gF~C~~   79 (80)
T 1hyp_A           72 PSNATCPR   79 (80)
T ss_dssp             CCCCCCSC
T ss_pred             cCCCCCCC
Confidence            99999974

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=95.18  E-value=0.00097  Score=43.91  Aligned_cols=61  Identities=23%  Similarity=0.553  Sum_probs=44.6

Q ss_pred             cCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539           58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP  131 (138)
Q Consensus        58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P  131 (138)
                      .+|..|...+.      -|.++..+||.-+++     +..|+|..+|...++ ..||.+.+.+ |...||..+|
T Consensus         5 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYG-QYIRSPHARD-TLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTH-HHHTCHHHHH-HHHHHTSCCS
T ss_pred             hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence            35677877552      234577789999984     488999999976665 4456665666 7789999987

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=94.20  E-value=0.0028  Score=41.84  Aligned_cols=61  Identities=23%  Similarity=0.535  Sum_probs=44.6

Q ss_pred             cCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539           58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP  131 (138)
Q Consensus        58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P  131 (138)
                      .+|..|...+.      -|.++..+||.-+++     ...|||..+|...++ ..||.+.+.+ |...||..+|
T Consensus         6 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~-Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYG-RYVNSPNARK-AVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHH-HHTTTTTGGG-CCCCCSSCSC
T ss_pred             hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHH-HHHHcCCCCC
Confidence            35677877652      234577789999984     489999999876655 4556666666 7789999987

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=93.13  E-value=0.0059  Score=40.75  Aligned_cols=70  Identities=26%  Similarity=0.490  Sum_probs=46.7

Q ss_pred             CCCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHh---hhhccceeeeccchhhHhhhhcC
Q 032539           51 QTCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIR---LKALNLVNLLVPVSLNVLVNDCG  127 (138)
Q Consensus        51 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiK---anvLg~i~~~ipv~l~llln~CG  127 (138)
                      ..|-.+..+|..|...+.+    +-..++...||.-+++ +|   ..|||..++   +.-+| |  |...++. |...||
T Consensus         3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~g-i--n~~~A~~-LP~~Cg   70 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFG-V--DPELASA-LPKQCG   70 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHT-B--CHHHHHH-HHHHTT
T ss_pred             chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcC-c--CHHHHHH-HHHHcC
Confidence            3576666778888876631    1013466779999998 33   389999888   33344 4  4454555 778999


Q ss_pred             CCCCC
Q 032539          128 KHVPA  132 (138)
Q Consensus       128 k~~P~  132 (138)
                      ..+|.
T Consensus        71 v~~p~   75 (77)
T 2rkn_A           71 LANAP   75 (77)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            98763

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=87.75  E-value=0.023  Score=39.13  Aligned_cols=69  Identities=26%  Similarity=0.538  Sum_probs=43.6

Q ss_pred             CCccccCccccccccccccccccCCCCCCCCCccccccccc-----c-hhhhhHHHHhhhhccce-eeeccchhhHhhhh
Q 032539           53 CPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL-----D-AAICLCTAIRLKALNLV-NLLVPVSLNVLVND  125 (138)
Q Consensus        53 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~-----d-AA~CLCtAiKanvLg~i-~~~ipv~l~llln~  125 (138)
                      |-....+|..|.+.+.|      |.++...||.-+++|.+.     | -+.|+|.  |...-+ + .||...+.. |...
T Consensus         3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~-~~~in~~~A~~-LP~~   72 (91)
T 1siy_A            3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGA-VRGINPNNAEA-LPGK   72 (91)
T ss_dssp             TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTC-CSSCCHHHHHH-HHHH
T ss_pred             HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccc-cCCcCHHHHHH-HHHH
Confidence            44444567778776632      233667799999988543     3 2689997  433222 2 345555555 7889


Q ss_pred             cCCCCC
Q 032539          126 CGKHVP  131 (138)
Q Consensus       126 CGk~~P  131 (138)
                      ||..+|
T Consensus        73 Cgv~~p   78 (91)
T 1siy_A           73 CGVNIP   78 (91)
T ss_dssp             HTCCCS
T ss_pred             cCCCCC
Confidence            999876

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=85.03  E-value=0.08  Score=36.44  Aligned_cols=65  Identities=25%  Similarity=0.547  Sum_probs=43.2

Q ss_pred             cCccccccccccccccccCCCCCCCCCccccccccc-----ch-hhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539           58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL-----DA-AICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP  131 (138)
Q Consensus        58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~-----dA-A~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P  131 (138)
                      .+|..|.+.+.|      |.++...||.-+++|.+.     |. +.|||...++.-++  .||...+.. |...||-.+|
T Consensus         9 ~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~--~in~~~A~~-LP~~Cgv~~p   79 (92)
T 2alg_A            9 SSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP--GVNPNNAAA-LPGKCGVSIP   79 (92)
T ss_dssp             HHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST--TCCHHHHHH-HHHHTTCCCS
T ss_pred             HhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC--ccChHHHHH-HHHHcCCCCC
Confidence            457778776531      224555799999987632     22 68999977776663  344454555 7889999876

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=84.06  E-value=0.1  Score=36.30  Aligned_cols=59  Identities=20%  Similarity=0.461  Sum_probs=40.3

Q ss_pred             CCCCCCCcccccccccc----hhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC----CCCcCC
Q 032539           78 NPKEKCCPLLQGLADLD----AAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP----AGFKCP  137 (138)
Q Consensus        78 p~~~~CC~li~gL~d~d----AA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P----~gf~C~  137 (138)
                      .+..+||.-+++|.+.-    .-.|+|..+|...-+...||..-+.. |-..||-.+|    ..+.|.
T Consensus        23 ~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~-LP~~CgV~~p~~Is~~~dC~   89 (93)
T 2ljo_A           23 GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAA-LPGKCGVNIPYKISTTTNCN   89 (93)
T ss_dssp             CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHH-HHHHHTCCCSSCCSTTCCGG
T ss_pred             CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHh-hhHhcCCCCCCCCCCCCCCC
Confidence            35678999888776532    24699999987654423455554554 8889999988    566664

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=83.06  E-value=0.079  Score=36.39  Aligned_cols=65  Identities=22%  Similarity=0.528  Sum_probs=40.3

Q ss_pred             cCccccccccccccccccCCCCCCCCCccccccccc---c---hhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539           58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL---D---AAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP  131 (138)
Q Consensus        58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~---d---AA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P  131 (138)
                      .+|..|.+.+.|      |.++..+||.-+++|.+.   .   -+.|+|..-.+.-++  .||...+.. |...||-.+|
T Consensus         8 ~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A~~-LP~~C~v~~p   78 (90)
T 1bwo_A            8 SLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH--NLNEDNARS-IPPKCGVNLP   78 (90)
T ss_dssp             HHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT--TCCHHHHHT-HHHHHTCCCS
T ss_pred             HhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC--CcCHHHHHH-HHHHcCCCCC
Confidence            456778776632      223666799999987632   1   278999533333331  344454554 7789999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1hypa_	75	a.52.1.1 (A:) Soybean hydrophobic protein {Soybean	4e-23

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Length = 75

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 84.0 bits (208), Expect = 4e-23
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 14/87 (16%)

Query: 52  TCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLV 111
           +CP     LS C+++LGG +         + CC L+ GL D++A +CLC  +R   +   
Sbjct: 2   SCP----DLSICLNILGGSLG------TVDDCCALIGGLGDIEAIVCLCIQLRALGI--- 48

Query: 112 NLLVPVSLNVLVNDCGKHVPAGFKCPT 138
            L +  +L +++N CG+  P+   CP 
Sbjct: 49  -LNLNRNLQLILNSCGRSYPSNATCPR 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	99.96
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	86.35
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	85.21
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	82.95

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.96  E-value=9.6e-32  Score=184.84  Aligned_cols=73  Identities=37%  Similarity=0.982  Sum_probs=66.1

Q ss_pred             CCCccccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC
Q 032539           52 TCPIDALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP  131 (138)
Q Consensus        52 ~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P  131 (138)
                      +||    |||+|+||||+++      ++.++||++|+||+|+|||+||||||||+++    +|+|+++++++|.|||++|
T Consensus         2 tCP----Klg~C~nvLg~~~------~~~~~CC~Ll~GL~dleAAvCLCtaika~~l----lnvpv~l~llln~Cgk~~P   67 (75)
T d1hypa_           2 SCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQLRALGI----LNLNRNLQLILNSCGRSYP   67 (75)
T ss_dssp             CSC----CCGGGGGGGGTCC------TTHHHHHHHHHTSCHHHHHHHHHHHHHHHTC----SCHHHHHHHHHHHTTCSSC
T ss_pred             CCC----chhhHHHHhcCcc------CCCCCcchHHhhHHHHHHHHHHHHHHHHhhh----ccccchHHHHHHHcCCcCc
Confidence            799    8999999998764      4568999999999999999999999999643    6779999999999999999


Q ss_pred             CCCcCCC
Q 032539          132 AGFKCPT  138 (138)
Q Consensus       132 ~gf~C~~  138 (138)
                      +||+||+
T Consensus        68 ~gF~CP~   74 (75)
T d1hypa_          68 SNATCPR   74 (75)
T ss_dssp             CCCCCSC
T ss_pred             CCCcCCC
Confidence            9999985

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=86.35  E-value=0.007  Score=40.39  Aligned_cols=75  Identities=20%  Similarity=0.492  Sum_probs=48.9

Q ss_pred             ccCccccccccccccccccCCCCCCCCCccccccccc----chhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC-
Q 032539           57 ALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL----DAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP-  131 (138)
Q Consensus        57 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P-  131 (138)
                      ..+|.-|.+.+.|     -+..+.++||.-+++|.+.    +...|+|..+|...-+...||..- ...|-..||-.+| 
T Consensus         8 ~~~l~pCl~Yltg-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~r-a~~LP~~C~v~l~~   81 (93)
T d1fk5a_           8 ASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGN-AASIPSKCGVSIPY   81 (93)
T ss_dssp             HHHHGGGHHHHTT-----CSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHH-HHHHHHHTTCCCSS
T ss_pred             HHHhhhhHHHHhC-----CCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHH-HHhhhHhcCCCCCC
Confidence            3466778776642     1233567899999988764    335689988887654322344443 4457889999887 


Q ss_pred             ---CCCcCC
Q 032539          132 ---AGFKCP  137 (138)
Q Consensus       132 ---~gf~C~  137 (138)
                         ..+.|.
T Consensus        82 pis~~~dCs   90 (93)
T d1fk5a_          82 TISTSTDCS   90 (93)
T ss_dssp             CCSTTCCGG
T ss_pred             CCCCCCCCC
Confidence               567774

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=85.21  E-value=0.034  Score=36.78  Aligned_cols=73  Identities=22%  Similarity=0.519  Sum_probs=48.7

Q ss_pred             cCccccccccccccccccCCCCCCCCCccccccccc----chhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCC--
Q 032539           58 LKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADL----DAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVP--  131 (138)
Q Consensus        58 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P--  131 (138)
                      .+|.-|.+.+.|      |..+.++||.-+++|.+.    +.-.|+|..+|...-+...+|..- ...|-..||-++|  
T Consensus         8 ~~l~pCl~Yl~g------~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~r-a~~LP~~C~v~~p~p   80 (91)
T d1mida_           8 SKMKPCLTYVQG------GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNN-AASIPSKCNVNVPYT   80 (91)
T ss_dssp             HHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHH-HHHHHHHTTCCCCSC
T ss_pred             HHHHhhHHHHcC------CCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHH-HHhchHhcCCCCCCC
Confidence            356667776632      234667899999988763    235799999987653322344443 3457889999988  


Q ss_pred             --CCCcCC
Q 032539          132 --AGFKCP  137 (138)
Q Consensus       132 --~gf~C~  137 (138)
                        ..+.|.
T Consensus        81 is~~~dC~   88 (91)
T d1mida_          81 ISPDIDCS   88 (91)
T ss_dssp             CCTTCCGG
T ss_pred             CCCCCCCC
Confidence              677774

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=82.95  E-value=0.05  Score=34.97  Aligned_cols=64  Identities=23%  Similarity=0.520  Sum_probs=48.1

Q ss_pred             cccCccccccccccccccccCCCCCCCCCcccccccccchhhhhHHHHhhhhccceeeeccchhhHhhhhcCCCCCC
Q 032539           56 DALKLSACVDVLGGLIHVGIGGNPKEKCCPLLQGLADLDAAICLCTAIRLKALNLVNLLVPVSLNVLVNDCGKHVPA  132 (138)
Q Consensus        56 d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAA~CLCtAiKanvLg~i~~~ipv~l~llln~CGk~~P~  132 (138)
                      |..+|..|+..+      ..|.++...||.-+.     |---|||.=+|.-.+. --|+-| +-+-+++.||..+|.
T Consensus         3 ~p~~L~~C~~Ai------~~g~~PS~~CC~kLk-----eQ~~ClC~Y~kdP~~~-~yv~sp-narkv~~aCgvp~P~   66 (67)
T d1tuka1           3 QASQLAVCASAI------LSGAKPSGECCGNLR-----AQQGCFCQYAKDPTYG-QYIRSP-HARDTLTSCGLAVPH   66 (67)
T ss_dssp             CGGGGGGGHHHH------HHCCCCCHHHHHHHH-----HHGGGHHHHTTCTTTH-HHHTSH-HHHHHHHHTTCCCCC
T ss_pred             ChhhccccHHHH------hcCCCCcHHHHHHHH-----hcCCccceecCCccHH-HHcCCH-HHHHHHHhcCCCCCC
Confidence            345788998754      356788889999887     4467999999988876 333444 456688899998874