Citrus Sinensis ID: 032553

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MESVASNSTSPDHRHRHRRFGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRERFHQLFFPSKE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHccEEEEEEcccEEEEEcccccEEEEEEcccccccccccccccEEHHHHHHHHHcccccccHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHcccccccccHHHHHHHHHHHHHEHHcccccEEEEEEccccEEEEEEccccccccccccccccEEEEEEHHHcccccccHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mesvasnstspdhrhrhrrfgltqpVSDRIARALRHQLLLLHRSDSLFFVLGATANVYtvnlssnpsctcpdrvtpckHILFVFMRvlgvspddkclrrrtlrpcqlsrllstptlpeamaGATLRERFHQLFFPSKE
Flexible Loop (DISEMBL)
mesvasnstspdhrhrhrrfgltqpvSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLgvspddkclrrrtlrpcqlsrllstptlpEAMAGATLRERFHQLFFPSKE
Low Complexity Region (SEG)
MESVASNSTSPDHRHRHRRFGLTQPVSDRIARAlrhqllllhrsdslFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRERFHQLFFPSKE
Disordered region (IsUnstruct)
*************************VSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLP*AMAGATLRERFHQLF*****
Disordered Region (DISOPRED)
*************************VSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLST**************RFH*L*F****
Disordered Region (DISEMBL)
*****************RRFGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRERFHQLFFPSKE
Disordered Region (DISPRO)
*******************FGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRE*FH*LFF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESVASNSTSPDHRHRHRRFGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRERFHQLFFPSKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q62925	1493	Mitogen-activated protein	yes	no	0.623	0.057	0.322	5e-05
Q13233	1512	Mitogen-activated protein	yes	no	0.586	0.053	0.329	0.0001
P53349	1493	Mitogen-activated protein	yes	no	0.623	0.057	0.311	0.0002

>sp|Q62925|M3K1_RAT Mitogen-activated protein kinase kinase kinase 1 OS=Rattus norvegicus GN=Map3k1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 24  QPVSDRIARALRHQLLLLHRSDSLFFVLGATA--NVYTVNLSSNPSCTCPDRVTPCKHIL 81
           +  S R+ + +R +L LL +     F++G  +  N Y V +    +C+C  R T C H+L
Sbjct: 292 EETSRRVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQ-NCSC-GRGTFCIHLL 349

Query: 82  FVFMRVLGVSPDDKCLRRRTLRPCQLSRLL 111
           FV +RV  + P D  L R+TL+  ++  L 
Sbjct: 350 FVMLRVFQLEPSDPMLWRKTLKNFEVESLF 379

Component of a protein kinase signal transduction cascade. Activates the ERK and JNK kinase pathways by phosphorylation of MAP2K1 and MAP2K4. Activates CHUK and IKBKB, the central protein kinases of the NF-kappa-B pathway.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 2EC: 5

>sp|Q13233|M3K1_HUMAN Mitogen-activated protein kinase kinase kinase 1 OS=Homo sapiens GN=MAP3K1 PE=1 SV=4

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 29  RIARALRHQLLLLHRSDSLFFVLGATA--NVYTVNLSSNPSCTCPDRVTPCKHILFVFMR 86
           R+ + +R +L LL +     F++G  +  N Y V +    +C+C  R T C H+LFV +R
Sbjct: 307 RVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQ-NCSCA-RGTFCIHLLFVMLR 364

Query: 87  VLGVSPDDKCLRRRTLRPCQLSRLL 111
           V  + P D  L R+TL+  ++  L 
Sbjct: 365 VFQLEPSDPMLWRKTLKNFEVESLF 389

Component of a protein kinase signal transduction cascade. Activates the ERK and JNK kinase pathways by phosphorylation of MAP2K1 and MAP2K4. Activates CHUK and IKBKB, the central protein kinases of the NF-kappa-B pathway.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 5

>sp|P53349|M3K1_MOUSE Mitogen-activated protein kinase kinase kinase 1 OS=Mus musculus GN=Map3k1 PE=1 SV=3

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 24  QPVSDRIARALRHQLLLLHRSDSLFFVLGATA--NVYTVNLSSNPSCTCPDRVTPCKHIL 81
           +  S R+ + +R +L LL +     F++G  +  N Y V +    +C+C  R   C H+L
Sbjct: 297 EETSRRVNKVMRARLYLLQQIGPNSFLIGGDSPDNKYRVFIGPQ-NCSC-GRGAFCIHLL 354

Query: 82  FVFMRVLGVSPDDKCLRRRTLRPCQLSRLL 111
           FV +RV  + P D  L R+TL+  ++  L 
Sbjct: 355 FVMLRVFQLEPSDPMLWRKTLKNFEVESLF 384

Component of a protein kinase signal transduction cascade. Activates the ERK and JNK kinase pathways by phosphorylation of MAP2K1 and MAP2K4. Activates CHUK and IKBKB, the central protein kinases of the NF-kappa-B pathway.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
225429924	233	PREDICTED: uncharacterized protein LOC10	0.992	0.587	0.753	8e-52
224089008	241	predicted protein [Populus trichocarpa]	0.913	0.522	0.674	2e-44
357466667	239	Mitogen-activated protein kinase kinase	0.855	0.493	0.711	2e-43
356518350	230	PREDICTED: uncharacterized protein LOC10	0.971	0.582	0.770	2e-43
255550920	246	conserved hypothetical protein [Ricinus	0.840	0.471	0.715	4e-42
297811283	272	hypothetical protein ARALYDRAFT_350357 [	0.963	0.488	0.604	3e-36
449461325	244	PREDICTED: mitogen-activated protein kin	0.942	0.532	0.656	5e-36
413954294	252	putative SWIM zinc finger family protein	0.804	0.440	0.630	1e-35
15239119	273	RING zinc-finger domain-containing prote	0.963	0.487	0.597	3e-35
242093302	270	hypothetical protein SORBIDRAFT_10g02188	0.782	0.4	0.651	3e-35

>gi|225429924|ref|XP_002281202.1| PREDICTED: uncharacterized protein LOC100266212 [Vitis vinifera]

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 117/138 (84%), Gaps = 1/138 (0%)

Query: 1   MESVASNSTSPDHRHRHRRFGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTV 60
           MESVASNS+ P+HR  H RF  TQPV+DRI RA+RH+L LLHRS+S FFVLGAT NVYTV
Sbjct: 1   MESVASNSSPPEHR-LHPRFKPTQPVADRIVRAIRHRLRLLHRSESNFFVLGATGNVYTV 59

Query: 61  NLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAM 120
            LS+NPSCTCPDR TPCKHILFVF++VLGVS DD CLRRRTLRPC LS LLS PT PEA+
Sbjct: 60  TLSTNPSCTCPDRTTPCKHILFVFIKVLGVSLDDSCLRRRTLRPCLLSHLLSKPTSPEAV 119

Query: 121 AGATLRERFHQLFFPSKE 138
           AGA +RERFHQLF  ++E
Sbjct: 120 AGAGVRERFHQLFLQARE 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089008|ref|XP_002308599.1| predicted protein [Populus trichocarpa] gi|222854575|gb|EEE92122.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 107/129 (82%), Gaps = 3/129 (2%)

Query: 12  DHRHRHR---RFGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSC 68
           ++RHR+R   R   +QPV+DRI RA+RH+L LLHRS++ FF+LGAT NVYTV LS+ P+C
Sbjct: 17  NYRHRNRLHLRLKPSQPVADRIVRAIRHRLRLLHRSEANFFILGATGNVYTVTLSATPTC 76

Query: 69  TCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRER 128
           +CPDR TPCKHILFV +RVLGVS DD CLRRR LR CQL+ LL TPTLPEA+AG ++RER
Sbjct: 77  SCPDRTTPCKHILFVLIRVLGVSLDDACLRRRNLRTCQLNHLLGTPTLPEALAGFSVRER 136

Query: 129 FHQLFFPSK 137
           FHQLFF ++
Sbjct: 137 FHQLFFQTR 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466667|ref|XP_003603618.1| Mitogen-activated protein kinase kinase kinase [Medicago truncatula] gi|355492666|gb|AES73869.1| Mitogen-activated protein kinase kinase kinase [Medicago truncatula]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 95/118 (80%)

Query: 19  RFGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCK 78
           RF  +QP+SDRI RALRH L LLHRS S FF+ GAT NVYTV LSS PSCTCPDR TPCK
Sbjct: 26  RFKHSQPISDRIVRALRHGLRLLHRSGSTFFIFGATGNVYTVTLSSTPSCTCPDRTTPCK 85

Query: 79  HILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRERFHQLFFPS 136
           HILFV +RVLGVS +D C+RR+ LRPC L RLL+ PTL EA+AG TLR+RFHQ+FF  
Sbjct: 86  HILFVMIRVLGVSQNDACVRRKNLRPCHLQRLLNMPTLQEAVAGFTLRQRFHQMFFEG 143

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518350|ref|XP_003527842.1| PREDICTED: uncharacterized protein LOC100775505 [Glycine max]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/135 (77%), Positives = 112/135 (82%), Gaps = 1/135 (0%)

Query: 1   MESVASNSTSPDHRHRHR-RFGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYT 59
           MES ASNS SP H H H  RF  +QP+SDRI RALRH+L LLHRS S FF+LGAT NVYT
Sbjct: 1   MESRASNSNSPYHYHHHHPRFKPSQPISDRIVRALRHRLRLLHRSGSTFFILGATGNVYT 60

Query: 60  VNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEA 119
           V LSS+PSCTCPDR TPCKHILFVF+RVLGVS DD CLRRRTLRPCQL RLL  PTLPE 
Sbjct: 61  VTLSSSPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRLLGAPTLPEV 120

Query: 120 MAGATLRERFHQLFF 134
           +AG TLR+RFHQLFF
Sbjct: 121 VAGGTLRQRFHQLFF 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550920|ref|XP_002516508.1| conserved hypothetical protein [Ricinus communis] gi|223544328|gb|EEF45849.1| conserved hypothetical protein [Ricinus communis]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 98/116 (84%)

Query: 23  TQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILF 82
           TQPV+DRI RALRH L LLHRS+S FF+LGAT NVYTV L++NP+CTCPDR TPCKHILF
Sbjct: 20  TQPVADRIFRALRHHLKLLHRSESNFFILGATGNVYTVTLTTNPACTCPDRTTPCKHILF 79

Query: 83  VFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRERFHQLFFPSKE 138
           V +RVLGVS +D CLRRRTLRPC++S LLSTPT  EA+A   +R+RFH+LFF  K+
Sbjct: 80  VLIRVLGVSLNDTCLRRRTLRPCRVSHLLSTPTSGEALASEGVRQRFHELFFQVKK 135

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811283|ref|XP_002873525.1| hypothetical protein ARALYDRAFT_350357 [Arabidopsis lyrata subsp. lyrata] gi|297319362|gb|EFH49784.1| hypothetical protein ARALYDRAFT_350357 [Arabidopsis lyrata subsp. lyrata]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 97/134 (72%), Gaps = 1/134 (0%)

Query: 1   MESVASNSTSPDHRHRHRRFGLTQPVSDRIARALRHQLLLLHRSDS-LFFVLGATANVYT 59
           MESV SN  SP   +R +R    QPV+DRI RALRH++ LLHR ++  F VLGAT NVYT
Sbjct: 1   MESVGSNQISPFVSNRDQRHFFAQPVADRILRALRHRIRLLHRPNAGTFHVLGATCNVYT 60

Query: 60  VNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEA 119
           V L + P+CTCPDR  PCKHILFV +RVLG+  DDKCLR+R LRPC L RL S PT P+ 
Sbjct: 61  VTLMATPTCTCPDRKKPCKHILFVLIRVLGIPLDDKCLRQRRLRPCLLFRLFSAPTRPDC 120

Query: 120 MAGATLRERFHQLF 133
           +A   L++RF QLF
Sbjct: 121 LASFRLQQRFLQLF 134

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461325|ref|XP_004148392.1| PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Cucumis sativus] gi|449507250|ref|XP_004162976.1| PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Cucumis sativus]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 104/134 (77%), Gaps = 4/134 (2%)

Query: 1   MESVASNSTSPDHRHRHRRFGLTQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTV 60
           MESVAS S SP   H   RF  +QPV+DRI RAL H L LLHRS S FFVLGAT NVY V
Sbjct: 1   MESVASTS-SP---HSVPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYIV 56

Query: 61  NLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAM 120
           +LSS PSCTCPDR+TPCKHILF++++ LG+S DD CLRRRTLRPCQL+RLL+ P + +++
Sbjct: 57  SLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKSL 116

Query: 121 AGATLRERFHQLFF 134
           A   LR+ FHQ FF
Sbjct: 117 AEIGLRKVFHQQFF 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413954294|gb|AFW86943.1| putative SWIM zinc finger family protein [Zea mays]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 89/111 (80%)

Query: 23  TQPVSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILF 82
           T+ V++RI RAL+HQL LLHR+ + FFVLG T NVYTV LS+ P+CTCPD   PCKHILF
Sbjct: 20  TRRVANRIIRALQHQLRLLHRAGAEFFVLGVTGNVYTVTLSTTPACTCPDPAVPCKHILF 79

Query: 83  VFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEAMAGATLRERFHQLF 133
           V +RVLG+S D+ C+ R+TL PCQ++RL+ TPT P+ +AGA  RERFHQL+
Sbjct: 80  VLLRVLGLSLDEACVWRQTLHPCQVARLVGTPTYPDVLAGARARERFHQLW 130

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239119|ref|NP_196723.1| RING zinc-finger domain-containing protein [Arabidopsis thaliana] gi|7573376|emb|CAB87680.1| putative protein [Arabidopsis thaliana] gi|26451179|dbj|BAC42693.1| unknown protein [Arabidopsis thaliana] gi|28973393|gb|AAO64021.1| unknown protein [Arabidopsis thaliana] gi|66865892|gb|AAY57580.1| PHD family protein [Arabidopsis thaliana] gi|332004319|gb|AED91702.1| RING zinc-finger domain-containing protein [Arabidopsis thaliana]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 1   MESVASNSTSPDHRHRHRRFGLTQPVSDRIARALRHQLLLLHRSDS-LFFVLGATANVYT 59
           MESV SN  SP   +R +R  L QPV+DRI RALRH++ LLHR ++  F VLGAT NVYT
Sbjct: 1   MESVGSNQISPYVSNRDQRHFLAQPVADRILRALRHRIRLLHRPNAGTFHVLGATCNVYT 60

Query: 60  VNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEA 119
           V L + P+CTCPDR  PCKHILFV +RVLG+  DDKCLR+R LR C L  L S PT P+ 
Sbjct: 61  VTLMATPTCTCPDRKKPCKHILFVLIRVLGIPLDDKCLRQRRLRTCLLFHLFSAPTRPDC 120

Query: 120 MAGATLRERFHQLF 133
           +A   L++RF QLF
Sbjct: 121 LASFRLQQRFLQLF 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093302|ref|XP_002437141.1| hypothetical protein SORBIDRAFT_10g021880 [Sorghum bicolor] gi|241915364|gb|EER88508.1| hypothetical protein SORBIDRAFT_10g021880 [Sorghum bicolor]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 89/109 (81%), Gaps = 1/109 (0%)

Query: 26  VSDRIARALRHQLLLLHRSDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFM 85
           V++RI RAL+HQL LLHR+ + FFVLGAT NVYTV LS+ P+CTCPD   PCKHILFV +
Sbjct: 32  VANRIIRALQHQLRLLHRAGAEFFVLGATGNVYTVTLSTAPACTCPDPAVPCKHILFVLL 91

Query: 86  RVLGVSPDDKCLRRRTLRPCQLSRLLSTP-TLPEAMAGATLRERFHQLF 133
           RVLG+S D+ C+ R+TLRPCQ++RL+ TP T P+ +AGA  RERFHQL+
Sbjct: 92  RVLGLSLDEACVWRQTLRPCQVARLVGTPTTYPDVLAGARARERFHQLW 140

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2181915	273	AT5G11620 [Arabidopsis thalian	0.963	0.487	0.544	9.8e-32
ASPGD|ASPL0000071211	333	AN4359 [Emericella nidulans (t	0.601	0.249	0.312	5.2e-05
UNIPROTKB|Q2KH23	321	MGCH7_ch7g162 "Putative unchar	0.268	0.115	0.461	0.00017

TAIR|locus:2181915 AT5G11620 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 73/134 (54%), Positives = 85/134 (63%)

Query:     1 MESVASNSTSPDHRHRHRRFGLTQPVSDRIARAXXXXXXXXXX-XXXXFFVLGATANVYT 59
             MESV SN  SP   +R +R  L QPV+DRI RA               F VLGAT NVYT
Sbjct:     1 MESVGSNQISPYVSNRDQRHFLAQPVADRILRALRHRIRLLHRPNAGTFHVLGATCNVYT 60

Query:    60 VNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLRPCQLSRLLSTPTLPEA 119
             V L + P+CTCPDR  PCKHILFV +RVLG+  DDKCLR+R LR C L  L S PT P+ 
Sbjct:    61 VTLMATPTCTCPDRKKPCKHILFVLIRVLGIPLDDKCLRQRRLRTCLLFHLFSAPTRPDC 120

Query:   120 MAGATLRERFHQLF 133
             +A   L++RF QLF
Sbjct:   121 LASFRLQQRFLQLF 134

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000071211 AN4359 [Emericella nidulans (taxid:162425)]

 Score = 103 (41.3 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 30/96 (31%), Positives = 43/96 (44%)

Query:     5 ASNSTSPDHRHRHRRFGLTQPVS--DRIARAXXXXXXXXXXXXXX--------FFVLGAT 54
             +  ST    R R RRF  + PVS   R+ RA                      F ++G+T
Sbjct:    70 SEESTETTER-RLRRFRHSPPVSYQQRLERAVTQRMFVVGQTVSGTDVVPELNFDIVGST 128

Query:    55 ANVYTVNLSSNPSCTCPD--RVTPCKHILFVFMRVL 88
              N+Y   +   P+C CPD  +   CKHI +V ++VL
Sbjct:   129 GNIYKTTVGKVPTCNCPDARKGNQCKHICYVLVKVL 164

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q2KH23 MGCH7_ch7g162 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 98 (39.6 bits), Expect = 0.00017, P = 0.00017
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query:    52 GATANVYTVNLSSNPSCTCPDRVT--PCKHILFVFMRVL 88
             G+T N+Y V+++  P+C CP  +    CKH LFV  RVL
Sbjct:   110 GSTGNIYHVHIAQQPTCDCPHALAGNQCKHWLFVMSRVL 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.136   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       124   0.00091  102 3  11 22  0.43    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  514 (55 KB)
  Total size of DFA:  114 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.56u 0.09s 11.65t   Elapsed:  00:00:01
  Total cpu time:  11.56u 0.09s 11.65t   Elapsed:  00:00:01
  Start:  Thu May  9 16:10:19 2013   End:  Thu May  9 16:10:20 2013

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032417001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (233 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	138
COG4279	266	COG4279, COG4279, Uncharacterized conserved protei	5e-04

>gnl|CDD|226729 COG4279, COG4279, Uncharacterized conserved protein [Function unknown]

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 68  CTCPDRVTPCKHIL--------------FVFMRVLGVSPDD-KCLRRRTLRPCQLSRLLS 112
           C+CPD   PCKHI               F+  ++ G + ++   L RR L   +      
Sbjct: 127 CSCPDYANPCKHIAAVYYLLAEKFDEDPFLIFKLRGRNKEELLALLRRQLVAAEPETNDI 186

Query: 113 TPTLPEA 119
           T    EA
Sbjct: 187 TWAAEEA 193

Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
COG4279	266	Uncharacterized conserved protein [Function unknow	98.27
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.15
COG4715	587	Uncharacterized conserved protein [Function unknow	96.55
COG5431	117	Uncharacterized metal-binding protein [Function un	94.73
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	90.45
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	86.75

>COG4279 Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=4.3e-07  Score=75.83  Aligned_cols=54  Identities=30%  Similarity=0.546  Sum_probs=44.2

Q ss_pred             EEEEcCC-CCcccCCCCCCCceehhHHHHHHh-cCCCCchhhhhccCCHHH-HHHhh
Q 032553           58 YTVNLSS-NPSCTCPDRVTPCKHILFVFMRVL-GVSPDDKCLRRRTLRPCQ-LSRLL  111 (138)
Q Consensus        58 Y~V~Ig~-~psCtCpd~g~~CKHI~~VllkVL-~~p~~~~l~~Q~aL~~~E-l~~il  111 (138)
                      |.-++++ ...|||||+.|.||||.-|++.+- ++++|..++|++..++.| |..+|
T Consensus       116 fP~t~~dl~~dCSCPD~anPCKHi~AvyY~lae~f~~dPflif~lRG~~k~eL~a~l  172 (266)
T COG4279         116 FPFTLRDLSTDCSCPDYANPCKHIAAVYYLLAEKFDEDPFLIFKLRGRNKEELLALL  172 (266)
T ss_pred             CCCchhhcccccCCCCcccchHHHHHHHHHHHHHhccCCeeeeeecCCCHHHHHHHH
Confidence            4444333 457999999999999999999985 789999999999888754 87777

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.15  E-value=1.5e-06  Score=52.29  Aligned_cols=30  Identities=43%  Similarity=0.993  Sum_probs=24.5

Q ss_pred             EEEEcCC------CCcccCCC---CCCCceehhHHHHHH
Q 032553           58 YTVNLSS------NPSCTCPD---RVTPCKHILFVFMRV   87 (138)
Q Consensus        58 Y~V~Ig~------~psCtCpd---~g~~CKHI~~VllkV   87 (138)
                      |+|+|+.      ..+||||+   .+..||||+.|++.+
T Consensus         1 y~V~i~~~~~~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen    1 YQVTIDDERVSIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             CEEEEcCCcccccccEeeCCCccccCCcchhHHHHHHhh
Confidence            5666653      68999998   689999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>COG4715 Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.0024  Score=58.67  Aligned_cols=46  Identities=28%  Similarity=0.465  Sum_probs=38.5

Q ss_pred             eeEEeccCCCeEEEEc-CC--CCcccCCC-CCCCceehhHHHHHHhcCCC
Q 032553           47 LFFVLGATANVYTVNL-SS--NPSCTCPD-RVTPCKHILFVFMRVLGVSP   92 (138)
Q Consensus        47 ~f~V~gstgnvY~V~I-g~--~psCtCpd-~g~~CKHI~~VllkVL~~p~   92 (138)
                      .-.|.|+-+--|.|++ ++  .++||||- ...-|||+.-|++..+..|.
T Consensus        51 ~A~V~Gs~~y~v~vtL~~~~~ss~CTCP~~~~gaCKH~VAvvl~~~~~p~  100 (587)
T COG4715          51 RAVVEGSRRYRVRVTLEGGALSSICTCPYGGSGACKHVVAVVLEYLDDPE  100 (587)
T ss_pred             EEEEeccceeeEEEEeecCCcCceeeCCCCCCcchHHHHHHHHHHhhccc
Confidence            5567788887789999 33  89999996 67899999999999998874

>COG5431 Uncharacterized metal-binding protein [Function unknown]

Probab=94.73  E-value=0.026  Score=42.17  Aligned_cols=33  Identities=33%  Similarity=0.858  Sum_probs=23.8

Q ss_pred             eeEEeccCCCeEEEEcCCCCcccCCC-------CCC-CceehhHH
Q 032553           47 LFFVLGATANVYTVNLSSNPSCTCPD-------RVT-PCKHILFV   83 (138)
Q Consensus        47 ~f~V~gstgnvY~V~Ig~~psCtCpd-------~g~-~CKHI~~V   83 (138)
                      .|.++|.+-+ |-+..|   -|||||       +|. .|+||+-+
T Consensus        35 ~fVyvG~~rd-YIl~~g---fCSCp~~~~svvl~Gk~~C~Hi~gl   75 (117)
T COG5431          35 FFVYVGKERD-YILEGG---FCSCPDFLGSVVLKGKSPCAHIIGL   75 (117)
T ss_pred             EEEEEccccc-eEEEcC---cccCHHHHhHhhhcCcccchhhhhe
Confidence            5666676544 888776   799999       343 49999753

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=90.45  E-value=0.15  Score=28.80  Aligned_cols=20  Identities=30%  Similarity=0.851  Sum_probs=17.4

Q ss_pred             cccCCC---CCCCceehhHHHHH
Q 032553           67 SCTCPD---RVTPCKHILFVFMR   86 (138)
Q Consensus        67 sCtCpd---~g~~CKHI~~Vllk   86 (138)
                      +|||..   .|-+|.|++.|+..
T Consensus         2 ~CsC~~~~~~gipC~H~i~v~~~   24 (28)
T smart00575        2 TCSCRKFQLSGIPCRHALAAAIH   24 (28)
T ss_pred             cccCCCcccCCccHHHHHHHHHH
Confidence            799998   68999999999864

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=86.75  E-value=1.2  Score=42.92  Aligned_cols=47  Identities=23%  Similarity=0.424  Sum_probs=34.3

Q ss_pred             eeEEeccCC-CeEEEEcCC---CCcccCCC---CCCCceehhHHHH--HHhcCCCC
Q 032553           47 LFFVLGATA-NVYTVNLSS---NPSCTCPD---RVTPCKHILFVFM--RVLGVSPD   93 (138)
Q Consensus        47 ~f~V~gstg-nvY~V~Ig~---~psCtCpd---~g~~CKHI~~Vll--kVL~~p~~   93 (138)
                      +|.|....+ ..|+|+.+.   .-+|+|.-   .|-+|.||+-||.  .|..+|..
T Consensus       556 ~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~  611 (846)
T PLN03097        556 TFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQ  611 (846)
T ss_pred             EEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchh
Confidence            666765433 358887654   57999998   7999999999887  44666764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 36/145 (24%)

Query: 2   ESVASNSTSPDHR-----HRHRRFGLTQP----------VSD-RIARA--LRHQLLLLHR 43
            S + +S++   R        RR   ++P          V + +   A  L  ++LL  R
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 44  SDSLFFVLGATANVYTVNLSSNPSCTCPDRVTPCKHILFVFMRVLGVSPDDKCLRRRTLR 103
              +   L A     T ++S +        +TP   +  + ++ L   P D  L R    
Sbjct: 274 FKQVTDFLSAA---TTTHISLDHH---SMTLTP-DEVKSLLLKYLDCRPQD--LPREV-- 322

Query: 104 PCQLSRLLSTPTLPEAMAGATLRER 128
               +          ++   ++R+ 
Sbjct: 323 -LTTNPRRL------SIIAESIRDG 340

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00