Citrus Sinensis ID: 032573

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGNV
Secondary Structure (PSIPRED)
cHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccc
Coil and Loop (DISEMBL)
mlselltnwsLYTNKAAALITLLVIIAINLAIgilphvdnfahiggFLTGFFLGFvllprprygwldgrnlpgsaaikSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRgengndrcrwchymscvptsswncegnv
Flexible Loop (DISEMBL)
MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYmscvptsswncegnv
Low Complexity Region (SEG)
MLSELLTNWSLYTNKaaalitllviiainlaigilPHVDNFAHIggfltgfflgfvllPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGNV
Disordered region (IsUnstruct)
****LLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNC****
Disordered Region (DISOPRED)
MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEG**
Disordered Region (DISEMBL)
MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGNV
Disordered Region (DISPRO)
MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCE***
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q6GMF8	857	Inactive rhomboid protein	yes	no	0.854	0.136	0.328	5e-16
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.854	0.136	0.283	1e-11
A7YWH9	856	Inactive rhomboid protein	yes	no	0.854	0.136	0.283	1e-11
Q499S9	856	Inactive rhomboid protein	yes	no	0.854	0.136	0.283	1e-11
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.854	0.136	0.276	3e-11
B1MT31	855	Inactive rhomboid protein	N/A	no	0.854	0.136	0.276	3e-11
Q96CC6	855	Inactive rhomboid protein	yes	no	0.854	0.136	0.305	4e-11
B0VX73	855	Inactive rhomboid protein	yes	no	0.854	0.136	0.305	5e-11
Q00M95	827	Inactive rhomboid protein	no	no	0.854	0.141	0.343	8e-11
Q80WQ6	827	Inactive rhomboid protein	no	no	0.854	0.141	0.343	1e-10

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL+ +W +      A   LL ++    A G+LP +DNFAHI GF++GFFL F  LP 
Sbjct: 732 LFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFAHISGFISGFFLSFAFLPY 791

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G LD              K  Q +++LV  + L AGL V   +         +C WC
Sbjct: 792 ISFGRLDMYR-----------KRCQIIIFLVVFLGLFAGLVVLFYV------HPIKCEWC 834

Query: 121 HYMSCVPTSSWNCE 134
             ++C+P +   CE
Sbjct: 835 ELLTCIPFTDKFCE 848

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.
Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W +      A   LL ++    A G+LP +DNFAHI GF++G FL F  LP 
Sbjct: 731 LFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGLFLSFAFLPY 790

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D             Y+    ++ +  +V L     + ++  F       RC WC
Sbjct: 791 ISFGKFD------------LYRKRCQII-IFQVVFLGLLAGLVVLFYFYPV----RCEWC 833

Query: 121 HYMSCVPTSSWNCE 134
            +++C+P +   CE
Sbjct: 834 EFLTCIPFTDKFCE 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP 
Sbjct: 731 LFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPY 790

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D             Y+    ++ +  LV L     + ++  F       RC WC
Sbjct: 791 ISFGKFD------------LYRKRCQII-VFQLVFLGLLAGLVVLFYFYPV----RCEWC 833

Query: 121 HYMSCVPTSSWNCE 134
            +++C+P +   CE
Sbjct: 834 EFLTCIPFTDKFCE 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W +      A   LL ++    A G+LP +DNFAHI GF++G FL F  LP 
Sbjct: 731 LFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGLFLSFAFLPY 790

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D             Y+    ++   ++ L +    V L   +       RC WC
Sbjct: 791 ISFGKFD------------LYRKRCQIIIFQAVFLGLLAGLVVLFYFY-----PVRCEWC 833

Query: 121 HYMSCVPTSSWNCE 134
            +++C+P +   CE
Sbjct: 834 EFLTCIPFTDKFCE 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP 
Sbjct: 730 LFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPY 789

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D             Y+    ++ +  +V L     + ++  F       RC WC
Sbjct: 790 ISFGKFD------------LYRKRCQII-IFQVVFLGLLAGLVVLFYFYPV----RCEWC 832

Query: 121 HYMSCVPTSSWNCE 134
            +++C+P +   CE
Sbjct: 833 EFLTCIPFTDKFCE 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP 
Sbjct: 730 LFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPY 789

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D             Y+    ++ +  +V L     + ++  F       RC WC
Sbjct: 790 ISFGKFD------------LYRKRCQII-VFQVVFLGLLAGLVVLFYFYPV----RCEWC 832

Query: 121 HYMSCVPTSSWNCE 134
            +++C+P +   CE
Sbjct: 833 EFLTCIPFTDKFCE 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP 
Sbjct: 730 LFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPY 789

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D              K  Q +++ V  + L+AGL V   +         RC WC
Sbjct: 790 ISFGKFDLYR-----------KRCQIIIFQVVFLGLLAGLVVLFYVY------PVRCEWC 832

Query: 121 HYMSCVPTSSWNCE 134
            +++C+P +   CE
Sbjct: 833 EFLTCIPFTDKFCE 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W +      A   LL ++      G+LP +DNFAHI GF++G FL F  LP 
Sbjct: 730 LFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPY 789

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D              K  Q +++ V  + L+AGL V   +         RC WC
Sbjct: 790 ISFGKFDLYR-----------KRCQIIVFQVVFLGLLAGLVVLFYVY------PVRCEWC 832

Query: 121 HYMSCVPTSSWNCE 134
            +++C+P +   CE
Sbjct: 833 EFLTCIPFTDKFCE 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W L      A + L  I+      G+LP +DN AHI GFL+G  L F  LP 
Sbjct: 702 LFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGLLLAFAFLPY 761

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D            KY+  +  L LVSL L+ AGL  +LV+       N    W 
Sbjct: 762 ITFGTSD------------KYR--KRALILVSL-LVFAGLFASLVIWLYVYPIN--WPWI 804

Query: 121 HYMSCVPTSSWNCE 134
            Y++C P +S  CE
Sbjct: 805 EYLTCFPFTSRFCE 818

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Canis familiaris (taxid: 9615)

>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +  EL  +W L      A   L  I+      G+LP +DN AHI GFL+G  L F  LP 
Sbjct: 702 LFVELFQSWQLLERPWKAFFNLSAIVLFLFICGLLPWIDNIAHIFGFLSGMLLAFAFLPY 761

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             +G  D            KY+  +  L LVSL L+ AGL  +LV+       N    W 
Sbjct: 762 ITFGTSD------------KYR--KRALILVSL-LVFAGLFASLVLWLYIYPIN--WPWI 804

Query: 121 HYMSCVPTSSWNCE 134
            Y++C P +S  CE
Sbjct: 805 EYLTCFPFTSRFCE 818

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
224134785	333	predicted protein [Populus trichocarpa]	0.992	0.408	0.772	5e-59
359490352	324	PREDICTED: inactive rhomboid protein 1 [	0.978	0.413	0.723	2e-56
225455416	325	PREDICTED: inactive rhomboid protein 1 i	0.978	0.412	0.723	3e-56
449446051	323	PREDICTED: inactive rhomboid protein 1-l	0.978	0.414	0.762	6e-56
255539517	325	KOM, putative [Ricinus communis] gi|2235	0.992	0.418	0.786	7e-54
356575933	329	PREDICTED: inactive rhomboid protein 1-l	0.992	0.413	0.713	2e-53
224122384	298	predicted protein [Populus trichocarpa]	0.978	0.449	0.746	5e-53
224074883	321	predicted protein [Populus trichocarpa]	0.978	0.417	0.708	2e-52
449452364	327	PREDICTED: inactive rhomboid protein 1-l	0.970	0.406	0.699	2e-50
356559853	329	PREDICTED: inactive rhomboid protein 1-l	0.992	0.413	0.727	1e-48

>gi|224134785|ref|XP_002321905.1| predicted protein [Populus trichocarpa] gi|222868901|gb|EEF06032.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (590), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 105/136 (77%), Positives = 119/136 (87%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSEL+TNWS+YTNKAAAL+TLLVII INLAIGILPHVDNFAHIGGFL+GF LGFVLLPR
Sbjct: 196 MLSELITNWSIYTNKAAALLTLLVIIVINLAIGILPHVDNFAHIGGFLSGFLLGFVLLPR 255

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
           P+YGWL+ RN+P    +KSKY+ HQY LWL+S++LLI G TVALVMLF+GENGND C WC
Sbjct: 256 PQYGWLERRNVPSGVGVKSKYRAHQYALWLISVILLIVGFTVALVMLFKGENGNDHCHWC 315

Query: 121 HYMSCVPTSSWNCEGN 136
           HY+SCVPTS W C  N
Sbjct: 316 HYLSCVPTSRWKCNDN 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490352|ref|XP_003634078.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 121/134 (90%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSEL+TNWS+YTN+AAAL+TLLVI+A+NL +GILP V+NFAHIGGF+TGFFLGF+L+PR
Sbjct: 187 MLSELITNWSMYTNRAAALLTLLVIVAVNLTVGILPRVNNFAHIGGFVTGFFLGFILMPR 246

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
           P++GW++GRNLP    +KSKYK +QYV WLVSLVLLIAG TV LVML++G+NG++ C WC
Sbjct: 247 PQFGWIEGRNLPADVRVKSKYKAYQYVCWLVSLVLLIAGFTVGLVMLYKGKNGSEHCHWC 306

Query: 121 HYMSCVPTSSWNCE 134
           HY+SCVPTSSW C+
Sbjct: 307 HYLSCVPTSSWKCD 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455416|ref|XP_002279077.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera] gi|297741091|emb|CBI31822.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 121/134 (90%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSEL+TNWS+YTN+AAAL+TLLVI+A+NL +GILP V+NFAHIGGF+TGFFLGF+L+PR
Sbjct: 188 MLSELITNWSMYTNRAAALLTLLVIVAVNLTVGILPRVNNFAHIGGFVTGFFLGFILMPR 247

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
           P++GW++GRNLP    +KSKYK +QYV WLVSLVLLIAG TV LVML++G+NG++ C WC
Sbjct: 248 PQFGWIEGRNLPADVRVKSKYKAYQYVCWLVSLVLLIAGFTVGLVMLYKGKNGSEHCHWC 307

Query: 121 HYMSCVPTSSWNCE 134
           HY+SCVPTSSW C+
Sbjct: 308 HYLSCVPTSSWKCD 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446051|ref|XP_004140785.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus] gi|449485528|ref|XP_004157199.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 103/135 (76%), Positives = 117/135 (86%), Gaps = 1/135 (0%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSEL TNW++YTNKAAAL TLLVII IN  IG+LPHV+NFAHIGGFLTGF LGF LLPR
Sbjct: 189 MLSELFTNWTIYTNKAAALATLLVIIFINFGIGLLPHVNNFAHIGGFLTGFLLGFALLPR 248

Query: 61  PRYGWLDGRNLPG-SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRW 119
           P+YGWL+ RNLPG  A + SKYKT+QYVLW+VS+VLLIAG T+ALVMLFR EN NDRC W
Sbjct: 249 PKYGWLEQRNLPGVGAGLSSKYKTYQYVLWIVSVVLLIAGFTIALVMLFREENANDRCHW 308

Query: 120 CHYMSCVPTSSWNCE 134
           CHY++CVPTS W C+
Sbjct: 309 CHYLNCVPTSRWQCD 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539517|ref|XP_002510823.1| KOM, putative [Ricinus communis] gi|223549938|gb|EEF51425.1| KOM, putative [Ricinus communis]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 122/136 (89%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSEL+TNW+LYTNKAAAL+TLLVIIAINLAIGILPHVDNFAHIGGFL+GF LGF+LL R
Sbjct: 188 MLSELITNWTLYTNKAAALLTLLVIIAINLAIGILPHVDNFAHIGGFLSGFLLGFILLAR 247

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
           P++GWL+ +N+P S  +KSKYK +QYVLWLV+L LLI GL VALVMLFRGENGNDRC WC
Sbjct: 248 PQFGWLESQNVPASVGVKSKYKGYQYVLWLVALALLIVGLVVALVMLFRGENGNDRCHWC 307

Query: 121 HYMSCVPTSSWNCEGN 136
           HY+SCVPTS W C+ N
Sbjct: 308 HYLSCVPTSRWKCDEN 323

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575933|ref|XP_003556090.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/136 (71%), Positives = 113/136 (83%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSEL+TNW++Y+NKA ALITLLVII INL IGILPHVDNFAHIGGFL GF LGF+LLPR
Sbjct: 193 MLSELITNWTIYSNKAMALITLLVIIVINLGIGILPHVDNFAHIGGFLVGFLLGFILLPR 252

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
           P++ WL+ R LP    +KSKYK +QYVLW+VSL+LLIAGL+ ALVMLFRGE G D C WC
Sbjct: 253 PQFSWLEQRRLPAGVGMKSKYKAYQYVLWIVSLILLIAGLSTALVMLFRGEKGYDHCHWC 312

Query: 121 HYMSCVPTSSWNCEGN 136
            Y++CVPTS W C  +
Sbjct: 313 RYLTCVPTSKWECSND 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122384|ref|XP_002318821.1| predicted protein [Populus trichocarpa] gi|222859494|gb|EEE97041.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 110/134 (82%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSEL+TNWS+YTNK AAL TLLVI AINLAIGILP VDNFAHIGGFL+GF LGFVLLPR
Sbjct: 165 MLSELITNWSIYTNKTAALFTLLVITAINLAIGILPRVDNFAHIGGFLSGFLLGFVLLPR 224

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
            +YGW   RNLP     KSK K +QY LWLVS+ LLI G TVALVMLF+G+NGND C WC
Sbjct: 225 SQYGWQGRRNLPSGVGFKSKLKAYQYALWLVSVALLIVGFTVALVMLFKGKNGNDHCHWC 284

Query: 121 HYMSCVPTSSWNCE 134
           HY+SCVPTS W C+
Sbjct: 285 HYLSCVPTSRWKCD 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074883|ref|XP_002304474.1| predicted protein [Populus trichocarpa] gi|222841906|gb|EEE79453.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/134 (70%), Positives = 114/134 (85%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSELLTNW++Y+NK AAL+TL+VIIAINLA+GILPHVDNFAHIGGF++GF LGFV L R
Sbjct: 187 MLSELLTNWTIYSNKIAALLTLVVIIAINLAVGILPHVDNFAHIGGFMSGFLLGFVFLLR 246

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
           P++GW + R+ P  A +KSK+K +QYVL L + VLLI G T+ALVMLF+GENGND C WC
Sbjct: 247 PQFGWAENRHSPADARVKSKHKAYQYVLMLAAAVLLIVGFTLALVMLFKGENGNDHCSWC 306

Query: 121 HYMSCVPTSSWNCE 134
           HY+SCVPTS WNC 
Sbjct: 307 HYLSCVPTSKWNCR 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452364|ref|XP_004143929.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus] gi|449495860|ref|XP_004159966.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/133 (69%), Positives = 110/133 (82%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSELLTNW++YTNK AAL TL+VI+ INLA+GILPHVDNFAHIGGFLTGF LGFVLL R
Sbjct: 193 MLSELLTNWTIYTNKVAALFTLIVIVVINLAVGILPHVDNFAHIGGFLTGFLLGFVLLVR 252

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
           P++ W +  +LP  A    KYKT+QY+LWL + +LL+AG T+ LVMLFRGENGN  C WC
Sbjct: 253 PQFKWTERHHLPPGARRVPKYKTYQYILWLAAAILLVAGFTLGLVMLFRGENGNKHCSWC 312

Query: 121 HYMSCVPTSSWNC 133
           HY+SCVPTS W+C
Sbjct: 313 HYLSCVPTSRWDC 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559853|ref|XP_003548211.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 114/136 (83%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           MLSEL+TNWS+YTNKAAAL TLL II INLAIG+LPHVDNFAHIGGFLTGF LGF+LL R
Sbjct: 194 MLSELITNWSIYTNKAAALFTLLFIIVINLAIGMLPHVDNFAHIGGFLTGFLLGFILLLR 253

Query: 61  PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
           P++GWL+ R  P    +KSKYK +QYVLW+VS +LLI GL++ALVMLFRGENG D C WC
Sbjct: 254 PQFGWLEQRRPPAGVRLKSKYKAYQYVLWIVSAILLIVGLSIALVMLFRGENGYDHCHWC 313

Query: 121 HYMSCVPTSSWNCEGN 136
           HY++CVPTS W C  N
Sbjct: 314 HYLTCVPTSKWKCNDN 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.978	0.387	0.507	9.2e-36
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.956	0.413	0.488	2e-31
TAIR|locus:2066102	389	RBL1 "RHOMBOID-like 1" [Arabid	1.0	0.352	0.482	8.8e-31
TAIR|locus:2084465	394	RBL4 "RHOMBOID-like protein 4"	0.956	0.332	0.413	2.8e-27
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.970	0.433	0.447	1.5e-26
TAIR|locus:2127258	313	RBL7 "RHOMBOID-like protein 7"	0.948	0.415	0.360	5.8e-18
TAIR|locus:2035190	309	RBL5 "RHOMBOID-like protein 5"	0.795	0.352	0.303	8.3e-10
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.956	0.373	0.269	5.2e-09
CGD|CAL0003539	669	RBD1 [Candida albicans (taxid:	0.437	0.089	0.279	5.2e-06
UNIPROTKB|Q5A3N6	669	RBD1 "Potential Rhomboid famil	0.437	0.089	0.279	5.2e-06

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 68/134 (50%), Positives = 84/134 (62%)

Query:     1 MLSELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPR 60
             MLSEL TNW++Y+NK                    PHVDNFAH+               R
Sbjct:   211 MLSELFTNWTIYSNKIAALLTLLFVILINLAIGILPHVDNFAHVGGFVTGFLLGFILLAR 270

Query:    61 PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             P++ WL   ++P    ++ KYKT+QY+LWL+SLVLLIAG  VAL+MLFRGENGND CRWC
Sbjct:   271 PQFKWLAREHMPQGTPLRYKYKTYQYLLWLLSLVLLIAGFVVALLMLFRGENGNDHCRWC 330

Query:   121 HYMSCVPTSSWNCE 134
             HY+ CVPTSSW C+
Sbjct:   331 HYLRCVPTSSWRCD 344

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 65/133 (48%), Positives = 78/133 (58%)

Query:     1 MLSELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPR 60
             MLSELLTNW++Y NK                    P VDNFAHI               R
Sbjct:   187 MLSELLTNWTIYANKAAALITLLFIIAINLALGMLPRVDNFAHIGGFLTGFCLGFVLLVR 246

Query:    61 PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             P+YGW   R    ++  K KY  +QYVL++VS+VLL+ GLTVALVMLF+GENGN  C+WC
Sbjct:   247 PQYGWEASRT--NTSRTKRKYSMYQYVLFVVSVVLLVVGLTVALVMLFKGENGNKHCKWC 304

Query:   121 HYMSCVPTSSWNC 133
             HY+SC PTS W C
Sbjct:   305 HYLSCFPTSKWTC 317

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2066102 RBL1 "RHOMBOID-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 68/141 (48%), Positives = 83/141 (58%)

Query:     1 MLSELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPR 60
             MLSELLTNW++Y NK                    PHVDNFAH+               R
Sbjct:   206 MLSELLTNWTIYANKFAALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIR 265

Query:    61 PRYGWLDGRNLP-GSAA--IKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRC 117
             P+YG+ + RN P G AA   KSK+K +QYVLW+ SLVLLIAG T  LV+L RG + N  C
Sbjct:   266 PQYGYFNQRNNPRGYAAPSAKSKHKPYQYVLWITSLVLLIAGYTAGLVVLLRGTDLNKHC 325

Query:   118 RWCHYMSCVPTSSWNCEG-NV 137
              WCHY+SC+PTS W+C+  NV
Sbjct:   326 SWCHYLSCIPTSLWSCKSQNV 346

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2084465 RBL4 "RHOMBOID-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 55/133 (41%), Positives = 74/133 (55%)

Query:     1 MLSELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPR 60
             MLSE+  NW++Y+NK                    P VDNFAHI               R
Sbjct:   216 MLSEIFINWTIYSNKVVTIVTLVLIVAVNLGLGVLPGVDNFAHIGGFATGFLLGFVLLIR 275

Query:    61 PRYGWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWC 120
             P YGW++ RN PG  A   ++K +Q +LW +SL++L+AG  V L+ LF   +GN+ C WC
Sbjct:   276 PHYGWINQRNGPG--AKPHRFKIYQGILWTISLLILVAGFIVGLISLFNNVDGNEHCSWC 333

Query:   121 HYMSCVPTSSWNC 133
             HY+SCVPTS W+C
Sbjct:   334 HYLSCVPTSKWSC 346

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 60/134 (44%), Positives = 74/134 (55%)

Query:     1 MLSELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPR 60
             MLSELLTNW++Y +K                    P VDNFAHI               +
Sbjct:   174 MLSELLTNWTIYKSKLCALLSFLFIIAINLAIGLLPWVDNFAHIGGLLTGFCLGFILLMQ 233

Query:    61 PRYGWLDGRNLPG-SAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRW 119
             P+ GW + RN     A  +SKY   QYVL+ V+ VL++AGLTV LVMLF GENGN  C+W
Sbjct:   234 PQSGWEEFRNSSQYGARARSKYNPCQYVLFFVAAVLVVAGLTVGLVMLFDGENGNKHCKW 293

Query:   120 CHYMSCVPTSSWNC 133
             CH + C PTS W+C
Sbjct:   294 CHRLDCYPTSKWSC 307

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2127258 RBL7 "RHOMBOID-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 48/133 (36%), Positives = 66/133 (49%)

Query:     1 MLSELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPR 60
             MLSELL NW+ Y NK                    P VDNFAHI                
Sbjct:   181 MLSELLINWTTYDNKGVAIVMLLVIVGVNLGLGTLPPVDNFAHIGGFFGGFLLGFLLLIH 240

Query:    61 PRYGWLDGRN--LPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCR 118
             P++ W + +   +PG+  +K KY T Q VL +V+ ++ +AG T  LV+LFRG++ N  C+
Sbjct:   241 PQFEWEENQVSLMPGTI-VKPKYNTCQLVLCIVASIVFVAGFTSGLVILFRGDSLNRYCK 299

Query:   119 WCHYMSCVPTSSW 131
             WCH +S    S W
Sbjct:   300 WCHKLSYSSKSQW 312

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2035190 RBL5 "RHOMBOID-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 34/112 (30%), Positives = 50/112 (44%)

Query:     1 MLSELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPR 60
             MLSEL+TNW++Y NK                    P VDN AH                R
Sbjct:   185 MLSELITNWTIYENKCTALMTLILIIVLNLSVGFLPRVDNSAHFGGFLAGFFLGFVLLLR 244

Query:    61 PRYGWLDGRNLPGSAAIK---SKYKTHQYVLWLVSLVLLIAGLTVALVMLFR 109
             P+YG+++ + +P    +K   SK+K +Q++    SL +L+AG       L R
Sbjct:   245 PQYGYVNPKYIPPGYDMKHKKSKHKCYQHIFRFTSLAILLAGFIAGYTKLLR 296

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 5.2e-09, P = 5.2e-09
 Identities = 38/141 (26%), Positives = 57/141 (40%)

Query:     1 MLSELLTNWSLYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHIXXXXXXXXXXXXXXPR 60
             MLS L  NW+LY +K                    P +DNFA+I               +
Sbjct:   199 MLSALAKNWNLYNSKISALAIIFTIFTVNFLIGFLPFIDNFANIGGFISGFLLGFVLLFK 258

Query:    61 PRY--------GWLDGRNLPGSAAIKSKYKTHQYVLWLVSLVLLIAGLTVALVMLFRGEN 112
             P+         G L   ++  S  +K ++   + VL ++ L++    L   L+    G N
Sbjct:   259 PQLRQMPPSHKGKLFEDDMNRSTRLKEQFD--RPVLRIICLLVFCGILAGVLLAACWGVN 316

Query:   113 GNDRCRWCHYMSCVPTSSWNC 133
              N  C WC Y+ CVPT  W+C
Sbjct:   317 LNRHCHWCRYVDCVPTKKWSC 337

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

CGD|CAL0003539 RBD1 [Candida albicans (taxid:5476)]

 Score = 98 (39.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 19/68 (27%), Positives = 38/68 (55%)

Query:    76 AIKSKYKTHQYVLW----LVSLVLLIAGLTVALVMLFRGE-NGNDRCRWCHYMSCVPTSS 130
             +I+ K ++ ++ +W    +++L+L+I  L +     F  + N  + C+WC Y +C+P   
Sbjct:   483 SIEDKIRS-RFFIWCGVRIIALILMIIYLVLLCKNFFNNDINRGNNCKWCKYFNCIPVKG 541

Query:   131 WNCE-GNV 137
             W C+ G V
Sbjct:   542 W-CDIGQV 548

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

UNIPROTKB|Q5A3N6 RBD1 "Potential Rhomboid family membrane protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 98 (39.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 19/68 (27%), Positives = 38/68 (55%)

Query:    76 AIKSKYKTHQYVLW----LVSLVLLIAGLTVALVMLFRGE-NGNDRCRWCHYMSCVPTSS 130
             +I+ K ++ ++ +W    +++L+L+I  L +     F  + N  + C+WC Y +C+P   
Sbjct:   483 SIEDKIRS-RFFIWCGVRIIALILMIIYLVLLCKNFFNNDINRGNNCKWCKYFNCIPVKG 541

Query:   131 WNCE-GNV 137
             W C+ G V
Sbjct:   542 W-CDIGQV 548

GO:0030447 "filamentous growth" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XV1114	hypothetical protein (333 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVIII.1336.1	hypothetical protein (209 aa)			•						0.486
	gw1.VI.85.1	hypothetical protein (242 aa)			•				•		0.407

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	4e-12

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 59.2 bits (144), Expect = 4e-12
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPR 60
           +L  L  N  L  N   AL+ LL II +NL +G LP + NFAH+GG + G  LGF+LL R
Sbjct: 85  LLVLLPRNRILLFNFPGALLLLLGIILLNLLLGFLPGISNFAHLGGLIAGLLLGFLLLRR 144

Query: 61  PR 62
           P+
Sbjct: 145 PQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.91
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.81
PTZ00101	278	rhomboid-1 protease; Provisional	99.0
PRK10907	276	intramembrane serine protease GlpG; Provisional	97.44
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	97.0
COG0705	228	Membrane associated serine protease [Amino acid tr	96.38

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-24  Score=188.08  Aligned_cols=117  Identities=24%  Similarity=0.572  Sum_probs=97.6

Q ss_pred             HhHHHhhcccccchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCcCccCCCCCCCccchhcch
Q 032573            2 LSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSKY   81 (137)
Q Consensus         2 l~dl~~~W~~~~~~~~~l~~l~~~i~i~l~~g~~p~idn~aHiGG~i~G~l~~~~~~~~~~~~~~~~~~~p~~~~~k~k~   81 (137)
                      ++||+++|+++++||+++..++..+.+..+ |++|+|||+|||.|+++|++++++++|+..||..|.+            
T Consensus       529 ~vEl~qs~~il~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~y------------  595 (652)
T KOG2290|consen  529 FVELFQSWQILERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDLY------------  595 (652)
T ss_pred             HHHHHhhhHhhhhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccccccchhhh------------
Confidence            689999999999999999998877766555 9999999999999999999999999999999875531            


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccceeecCCCCCCCCC
Q 032573           82 KTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVPTSSWNCEGN  136 (137)
Q Consensus        82 k~~~~~l~ii~l~lli~~f~~~lv~~~~~~~~~~~C~wC~YlnCiP~~~w~C~~~  136 (137)
                      +  ++.+.+++.+++..+++..+++|| ++  ..+|+||.|+||+|+++-+|+.+
T Consensus       596 r--Kr~~ilIs~ivf~~Lla~Lvv~fy-~~--~i~cpWce~ltClP~~~~~~e~~  645 (652)
T KOG2290|consen  596 R--KRFYILISQIVFSGLLAILVVVFY-NY--PIDCPWCEHLTCLPFTDCFCEKY  645 (652)
T ss_pred             h--hHHHHHHHHHHHHHHHHHHHHhee-ec--ccCCchhhhccccchhhhhhhhh
Confidence            0  135667777777777767666666 44  46899999999999999999864

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-20  Score=157.93  Aligned_cols=121  Identities=52%  Similarity=0.858  Sum_probs=106.2

Q ss_pred             CHhHHHhhcccccchHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCCCcCccCCCCCCCccchhcc
Q 032573            1 MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRPRYGWLDGRNLPGSAAIKSK   80 (137)
Q Consensus         1 ml~dl~~~W~~~~~~~~~l~~l~~~i~i~l~~g~~p~idn~aHiGG~i~G~l~~~~~~~~~~~~~~~~~~~p~~~~~k~k   80 (137)
                      |++|+++||++++++..++..+++++.+|+.+|++|++|||||+||+++|++.|+++.+.+++++......+  .+.+.|
T Consensus       196 ~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~--~~~~~~  273 (316)
T KOG2289|consen  196 HLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV--LRVFSK  273 (316)
T ss_pred             HHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEecccee--eecccc
Confidence            689999999999999999999999999999999999999999999999999999999999999987654433  233455


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccceeec
Q 032573           81 YKTHQYVLWLVSLVLLIAGLTVALVMLFRGENGNDRCRWCHYMSCVP  127 (137)
Q Consensus        81 ~k~~~~~l~ii~l~lli~~f~~~lv~~~~~~~~~~~C~wC~YlnCiP  127 (137)
                      ++.+|.+.|+..++.++.++.++++.+|.+    ++|.||+++.|+|
T Consensus       274 ~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~  316 (316)
T KOG2289|consen  274 RLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP  316 (316)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence            667777888888888888888888888875    7999999999987

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.00  E-value=2.8e-09  Score=88.11  Aligned_cols=57  Identities=21%  Similarity=0.506  Sum_probs=44.1

Q ss_pred             HhHHHhhcccccchHHHHHHHHHHHHHHHHH--hh-ccchhhHHHHHHHHHHHHHHHhhc
Q 032573            2 LSELLTNWSLYTNKAAALITLLVIIAINLAI--GI-LPHVDNFAHIGGFLTGFFLGFVLL   58 (137)
Q Consensus         2 l~dl~~~W~~~~~~~~~l~~l~~~i~i~l~~--g~-~p~idn~aHiGG~i~G~l~~~~~~   58 (137)
                      +++++.+|+..++|.+.+..++.++++.+.+  ++ .|+|||+||+||+++|+++|.++-
T Consensus       180 ~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~  239 (278)
T PTZ00101        180 TSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYN  239 (278)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            5688999999888877666655555554443  33 389999999999999999998863

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=97.44  E-value=0.00027  Score=58.53  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhh----ccchhhHHHHHHHHHHHHHHHhh
Q 032573           21 TLLVIIAINLAIGI----LPHVDNFAHIGGFLTGFFLGFVL   57 (137)
Q Consensus        21 ~l~~~i~i~l~~g~----~p~idn~aHiGG~i~G~l~~~~~   57 (137)
                      .++.+.++.+++|+    .++|||.||+||+++|+++|+..
T Consensus       228 ~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~  268 (276)
T PRK10907        228 GLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWD  268 (276)
T ss_pred             HHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh
Confidence            45566666666555    27899999999999999999865

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.00  E-value=4.3e-05  Score=55.17  Aligned_cols=37  Identities=41%  Similarity=1.015  Sum_probs=29.8

Q ss_pred             HHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhccCC
Q 032573           25 IIAINLAIGILPHVDNFAHIGGFLTGFFLGFVLLPRP   61 (137)
Q Consensus        25 ~i~i~l~~g~~p~idn~aHiGG~i~G~l~~~~~~~~~   61 (137)
                      .+.+.+.+++.|.+|+.+|++|++.|++.+..+.++|
T Consensus       108 ~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen  108 VLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             CCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3455666677899999999999999999999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=96.38  E-value=0.0075  Score=47.34  Aligned_cols=38  Identities=32%  Similarity=0.518  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHhhcc
Q 032573           22 LLVIIAINLAIGIL---PHVDNFAHIGGFLTGFFLGFVLLP   59 (137)
Q Consensus        22 l~~~i~i~l~~g~~---p~idn~aHiGG~i~G~l~~~~~~~   59 (137)
                      +.+.++.+++.+..   |+|+++||+||+++|++.+..+.+
T Consensus       171 i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~  211 (228)
T COG0705         171 ILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSR  211 (228)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444455555553   369999999999999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	7e-10
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	2e-05

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 53.5 bits (129), Expect = 7e-10
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGIL-PHVDNFAHIGGFLTGFFLGFVLLP 59
           +      N  L+         LLV IA+     +    + N AHI G + G   GF+   
Sbjct: 126 VFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK 185

Query: 60  RPR 62
             +
Sbjct: 186 LRK 188

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 18  ALITLLVIIAINLAIGIL-PHVDNFAHIGGFLTGFFLGFVL 57
            LI   +I  +     +    + N AHI G   G  + FV 
Sbjct: 138 GLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	97.51
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	97.03

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=97.51  E-value=9.9e-05  Score=55.48  Aligned_cols=37  Identities=30%  Similarity=0.458  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHhhc----cchhhHHHHHHHHHHHHHHHhh
Q 032573           21 TLLVIIAINLAIGIL----PHVDNFAHIGGFLTGFFLGFVL   57 (137)
Q Consensus        21 ~l~~~i~i~l~~g~~----p~idn~aHiGG~i~G~l~~~~~   57 (137)
                      +...++++.+++++.    |++||+||+||+++|++.+.++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~  178 (181)
T 2xov_A          138 GLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (181)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            344445555666663    5999999999999999999876

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=97.03  E-value=5.5e-05  Score=57.66  Aligned_cols=24  Identities=33%  Similarity=0.624  Sum_probs=21.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhcc
Q 032573           36 PHVDNFAHIGGFLTGFFLGFVLLP   59 (137)
Q Consensus        36 p~idn~aHiGG~i~G~l~~~~~~~   59 (137)
                      ++|||+||+||+++|++++..+.+
T Consensus       162 ~~v~~~aHlgG~l~G~l~~~~~~~  185 (196)
T 2nr9_A          162 VEMGNAAHISGLIVGLIWGFIDSK  185 (196)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHh
Confidence            389999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	3e-04
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-04

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGIL-PHVDNFAHIGGFLTGFFLGFVLLP 59
           +      N  L+         LLV IA+     +    + N AHI G + G   GF+   
Sbjct: 123 VFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK 182

Query: 60  RPR 62
             +
Sbjct: 183 LRK 185

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 18/56 (32%)

Query: 1   MLSELLTNWSLYTNKAAALITLLVIIAINLAIGILPHVDNFAHIGGFLTGFFLGFV 56
            L       S    +   +I  L+ I           + N AHI G   G  + FV
Sbjct: 122 WLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	97.31
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	96.99

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=97.31  E-value=1.2e-05  Score=58.84  Aligned_cols=35  Identities=34%  Similarity=0.537  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhh-ccchhhHHHHHHHHHHHHHHHhh
Q 032573           23 LVIIAINLAIGI-LPHVDNFAHIGGFLTGFFLGFVL   57 (137)
Q Consensus        23 ~~~i~i~l~~g~-~p~idn~aHiGG~i~G~l~~~~~   57 (137)
                      +..+++.+..+. .|++|+.||+||+++|++.|++.
T Consensus       145 ~~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~  180 (189)
T d2nr9a1         145 LVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFID  180 (189)
T ss_dssp             TTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence            333444444444 48999999999999999999986

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00044  Score=49.45  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=21.1

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhh
Q 032573           35 LPHVDNFAHIGGFLTGFFLGFVL   57 (137)
Q Consensus        35 ~p~idn~aHiGG~i~G~l~~~~~   57 (137)
                      .|.+|+.||+||+++|++.|++.
T Consensus       156 ~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         156 GMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999874