Citrus Sinensis ID: 032576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MRPNGEPKRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHcccccHEEEEccccccccEEccccEEEccccccccHHHHHEHcc
Coil and Loop (DISEMBL)
mrpngepkrrkstatrasspspsrrrgettVRSATLLDNELATEEEISTLFTDlrissadstanprsfpysvKQQCWEKAekvrgrdpdrwrkdalgNVVFRklvgcpgclchdydhilpyskggkstlencqvlqv
Flexible Loop (DISEMBL)
mrpngepkrrkstatrasspspsrrrgettvrsatlldnelateEEISTLFTdlrissadstanprsfpysvkqqcwekaekvrgrdpdrwrkdalgnvVFRKLVGCPGCLCHDYDHILpyskggkstlencqvlqv
Low Complexity Region (SEG)
MRPNGEPkrrkstatrasspspsrrrGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV
Disordered region (IsUnstruct)
************************************************TLFTDL*****************VKQQCWEKA********DRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKG*************
Disordered Region (DISOPRED)
***********************************************************************VKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVL**
Disordered Region (DISEMBL)
*******************************RSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV
Disordered Region (DISPRO)
**********************************************I*TLFTDLRIS*****ANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRPNGEPKRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
255547375	203	endonuclease, putative [Ricinus communis	0.905	0.610	0.710	4e-46
225457397	199	PREDICTED: uncharacterized protein LOC10	0.854	0.587	0.711	1e-43
359491703	167	PREDICTED: uncharacterized protein LOC10	0.846	0.694	0.717	1e-43
449477241	200	PREDICTED: uncharacterized protein LOC10	0.715	0.49	0.764	3e-40
449440796	200	PREDICTED: uncharacterized protein LOC10	0.715	0.49	0.764	5e-40
15232817	234	HNH endonuclease [Arabidopsis thaliana]	0.927	0.542	0.589	3e-39
297815918	225	HNH endonuclease domain-containing prote	0.927	0.564	0.615	5e-38
351720795	206	uncharacterized protein LOC100500174 [Gl	0.729	0.485	0.692	4e-37
388520967	198	unknown [Lotus japonicus]	0.846	0.585	0.607	4e-37
326534162	180	predicted protein [Hordeum vulgare subsp	0.890	0.677	0.583	2e-36

>gi|255547375|ref|XP_002514745.1| endonuclease, putative [Ricinus communis] gi|223546349|gb|EEF47851.1| endonuclease, putative [Ricinus communis]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/128 (71%), Positives = 104/128 (81%), Gaps = 4/128 (3%)

Query: 13  TATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRIS---SADSTANPRSFP 69
           TA+ +S+P  S RR  T   SATL D E+ TEE+  TLF DL+IS   +  S+  PRSFP
Sbjct: 23  TASFSSTPDSSHRRS-TLAHSATLQDREVLTEEDTLTLFEDLQISEKYTKFSSTEPRSFP 81

Query: 70  YSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTL 129
           YSVKQQCW+KAEKV+GRDPDRWR+D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTL
Sbjct: 82  YSVKQQCWDKAEKVKGRDPDRWRRDPLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTL 141

Query: 130 ENCQVLQV 137
           ENCQVLQ 
Sbjct: 142 ENCQVLQA 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457397|ref|XP_002284877.1| PREDICTED: uncharacterized protein LOC100262165 isoform 1 [Vitis vinifera]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 96/118 (81%), Gaps = 1/118 (0%)

Query: 20  PSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEK 79
           PS SR     +  S +LLD    TE+E +TLF +L+IS  +   NPRSFPYSVKQQCWEK
Sbjct: 29  PSGSRSTTRLSPSSTSLLDTPFITEDEDATLFDNLKIS-PNPNFNPRSFPYSVKQQCWEK 87

Query: 80  AEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV 137
           AEK++GRDPDRWR+D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQ 
Sbjct: 88  AEKIKGRDPDRWRRDPLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQA 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491703|ref|XP_003634310.1| PREDICTED: uncharacterized protein LOC100262165 isoform 2 [Vitis vinifera]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 96/117 (82%), Gaps = 1/117 (0%)

Query: 20  PSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEK 79
           PS SR     +  S +LLD    TE+E +TLF +L+IS  +   NPRSFPYSVKQQCWEK
Sbjct: 29  PSGSRSTTRLSPSSTSLLDTPFITEDEDATLFDNLKIS-PNPNFNPRSFPYSVKQQCWEK 87

Query: 80  AEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQ 136
           AEK++GRDPDRWR+D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQ
Sbjct: 88  AEKIKGRDPDRWRRDPLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQ 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477241|ref|XP_004154969.1| PREDICTED: uncharacterized protein LOC101226861 [Cucumis sativus]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 88/102 (86%), Gaps = 4/102 (3%)

Query: 38  DNELATEEEISTLFTDLRISSADSTAN--PRSFPYSVKQQCWEKAEKVRGRDPDRWRKDA 95
           D +L T E  S+L  DL++S  DS +N  PRSFP+SVKQQCW+KAEK++GRDPDRWR+DA
Sbjct: 47  DRDLVTGE--SSLLGDLKLSPDDSVSNYNPRSFPHSVKQQCWDKAEKIKGRDPDRWRRDA 104

Query: 96  LGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV 137
           LGN VFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQ 
Sbjct: 105 LGNTVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQA 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440796|ref|XP_004138170.1| PREDICTED: uncharacterized protein LOC101222461 [Cucumis sativus]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/102 (76%), Positives = 87/102 (85%), Gaps = 4/102 (3%)

Query: 38  DNELATEEEISTLFTDLRISSADSTAN--PRSFPYSVKQQCWEKAEKVRGRDPDRWRKDA 95
           D +L T E  S+L  DL+ S  DS +N  PRSFP+SVKQQCW+KAEK++GRDPDRWR+DA
Sbjct: 47  DRDLVTGE--SSLLGDLKFSPDDSVSNYNPRSFPHSVKQQCWDKAEKIKGRDPDRWRRDA 104

Query: 96  LGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV 137
           LGN VFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQ 
Sbjct: 105 LGNTVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQA 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232817|ref|NP_190333.1| HNH endonuclease [Arabidopsis thaliana] gi|6522532|emb|CAB61975.1| hypothetical protein [Arabidopsis thaliana] gi|117168237|gb|ABK32201.1| At3g47490 [Arabidopsis thaliana] gi|332644767|gb|AEE78288.1| HNH endonuclease [Arabidopsis thaliana]

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 102/151 (67%), Gaps = 24/151 (15%)

Query: 1   MRPNGEPKRRKSTATRASSPSPSR--------------RRGETTVRSATLLDNELATEEE 46
           M+P  +P RR++ A  +SSPS +R               RG     SATLLD      EE
Sbjct: 40  MKP--DPTRRRNRALSSSSPSKTRPELSSGSPNRNTGEARGGKVKTSATLLD-----REE 92

Query: 47  ISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVG 106
           +  LF        D    PRSFPYSVKQQCWEKAEK++GRDP+RWR+D LGN+VFRKLVG
Sbjct: 93  MG-LFPG--SGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVG 149

Query: 107 CPGCLCHDYDHILPYSKGGKSTLENCQVLQV 137
           CPGCLCHDYDHI+PYSKGGKSTLENCQVLQ 
Sbjct: 150 CPGCLCHDYDHIVPYSKGGKSTLENCQVLQA 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815918|ref|XP_002875842.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321680|gb|EFH52101.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/143 (61%), Positives = 102/143 (71%), Gaps = 16/143 (11%)

Query: 1   MRPNGEPKRRKSTA-TRASSPSPSR-----RRGETTVRSATLLDNELATEEEISTLFTDL 54
           M+P  +P RR++ A + +SSPS +R      RG     SATLLD      EE+  LF   
Sbjct: 39  MKP--DPARRRNRALSPSSSPSKTRPGSGEARGGKVKTSATLLD-----REEMG-LFPG- 89

Query: 55  RISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHD 114
                D    PRSFPYSVKQQCWEKAEK++GRDP+RWR+D LGN+VFRKLVGCPGCLCHD
Sbjct: 90  -SGYDDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDPLGNIVFRKLVGCPGCLCHD 148

Query: 115 YDHILPYSKGGKSTLENCQVLQV 137
           YDHI+PYSKGGKS LENCQVLQ 
Sbjct: 149 YDHIVPYSKGGKSILENCQVLQA 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720795|ref|NP_001237956.1| uncharacterized protein LOC100500174 [Glycine max] gi|255629565|gb|ACU15130.1| unknown [Glycine max]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 88/104 (84%), Gaps = 4/104 (3%)

Query: 34  ATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWRK 93
           ATLLD     ++++++LF D    + +   NPRSFP+SVKQ+CWEKA+KV+GRDPDRWR+
Sbjct: 53  ATLLD----VDDDVTSLFHDYPSPNPNPNPNPRSFPHSVKQKCWEKADKVKGRDPDRWRR 108

Query: 94  DALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQV 137
           DALGN +FRKLVGCPGCLCHDYDHI+PYSKGG+STLENCQVLQ 
Sbjct: 109 DALGNTLFRKLVGCPGCLCHDYDHIIPYSKGGESTLENCQVLQA 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520967|gb|AFK48545.1| unknown [Lotus japonicus]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 93/130 (71%), Gaps = 14/130 (10%)

Query: 8   KRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANPRS 67
           K R +T +   S SP R    +T  SATLLD++         LF D          NPRS
Sbjct: 29  KDRSATTSSKLSSSPKR----STSPSATLLDDDPVA------LFDDY----THPNPNPRS 74

Query: 68  FPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKS 127
           FP+SVKQ+CWEKA+K++GRDPDRWR+D LGN +FRKLVGCPGCLCHDYDHI+PYSKGG+S
Sbjct: 75  FPHSVKQKCWEKADKIKGRDPDRWRRDPLGNTIFRKLVGCPGCLCHDYDHIVPYSKGGQS 134

Query: 128 TLENCQVLQV 137
           TLENCQVLQ 
Sbjct: 135 TLENCQVLQA 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326534162|dbj|BAJ89431.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/132 (58%), Positives = 91/132 (68%), Gaps = 10/132 (7%)

Query: 6   EPKRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSADSTANP 65
           +P RR+    RA  P P +  G T   ++       +   ++  L          S + P
Sbjct: 5   KPMRRR----RADHPPPPQSFGATARPTSPRSSTSASAVADLDELL------HTPSASEP 54

Query: 66  RSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKGG 125
           RSFP++VKQQCWEKAEKV GRDP+RWR+DALGN+VFRKLVGCPGCLCHDYDHILPYSKGG
Sbjct: 55  RSFPHAVKQQCWEKAEKVPGRDPERWRRDALGNIVFRKLVGCPGCLCHDYDHILPYSKGG 114

Query: 126 KSTLENCQVLQV 137
           KSTLENCQVLQ 
Sbjct: 115 KSTLENCQVLQA 126

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2079137	234	AT3G47490 [Arabidopsis thalian	0.700	0.410	0.730	4.9e-37
TAIR|locus:2035020	186	AT1G18680 [Arabidopsis thalian	0.525	0.387	0.569	4.9e-21

TAIR|locus:2079137 AT3G47490 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 76/104 (73%), Positives = 83/104 (79%)

Query:    33 SATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWR 92
             SATLLD E     E+  LF        D    PRSFPYSVKQQCWEKAEK++GRDP+RWR
Sbjct:    84 SATLLDRE-----EMG-LFPGS--GYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWR 135

Query:    93 KDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQ 136
             +D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQ
Sbjct:   136 RDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQ 179

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2035020 AT1G18680 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 41/72 (56%), Positives = 51/72 (70%)

Query:    65 PRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKG 124
             PR F    K +CW  A+ V GR P+RWRKD  GN+V ++   C GCLC +YDHI+PYSKG
Sbjct:    40 PRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIVPYSKG 99

Query:   125 GKSTLENCQVLQ 136
             G+S  ENCQ+LQ
Sbjct:   100 GESIAENCQILQ 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       118   0.00091  102 3  11 22  0.38    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.87u 0.11s 11.98t   Elapsed:  00:00:01
  Total cpu time:  11.87u 0.11s 11.98t   Elapsed:  00:00:01
  Start:  Thu May  9 16:50:52 2013   End:  Thu May  9 16:50:53 2013

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016323001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (199 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
pfam01844	47	pfam01844, HNH, HNH endonuclease	2e-05
cd00085	57	cd00085, HNHc, HNH nucleases; HNH endonuclease sig	2e-04
smart00507	52	smart00507, HNHc, HNH nucleases	6e-04

>gnl|CDD|216737 pfam01844, HNH, HNH endonuclease

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 7/36 (19%)

Query: 107 CPGCLCHD-------YDHILPYSKGGKSTLENCQVL 135
           C  C            DHI+P SKGG   L N  +L
Sbjct: 1   CQYCGRPFKDTDALEVDHIIPRSKGGADDLSNLVLL 36

Length = 47

>gnl|CDD|238038 cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 99  VVFRKLVGCPGCLCH------DYDHILPYSKGGKSTLENCQVL 135
           V+  +   CP C         + DHI+P S GG + L+N  +L
Sbjct: 6   VLLARDGLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLL 48

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins. Length = 57

>gnl|CDD|214702 smart00507, HNHc, HNH nucleases

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 98  NVVFRKLVGCPGCLCH-----DYDHILPYSKGGKSTLENCQVL 135
            ++  +   C  C        + DHI+P S GG   L+N  +L
Sbjct: 4   RLLLHRDGVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLL 46

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
cd00085	57	HNHc HNH nucleases; HNH endonuclease signature whi	98.73
PF01844	47	HNH: HNH endonuclease; InterPro: IPR002711 HNH end	98.65
smart00507	52	HNHc HNH nucleases.	98.49
PF13395	54	HNH_4: HNH endonuclease	98.33
TIGR01865	805	cas_Csn1 CRISPR-associated protein, Csn1 family. C	98.22
COG1403	146	McrA Restriction endonuclease [Defense mechanisms]	97.77
PRK11295	113	hypothetical protein; Provisional	97.62
TIGR02646	144	conserved hypothetical protein TIGR02646. Members	97.37
TIGR03031	802	cas_csx12 CRISPR-associated protein, Csx12 family.	93.62
PF13391	66	HNH_2: HNH endonuclease	90.83
PF14279	71	HNH_5: HNH endonuclease	84.09
COG3440	301	Predicted restriction endonuclease [Defense mechan	83.68
COG3513	1088	Predicted CRISPR-associated nuclease, contains Mcr	82.89
PHA02565	157	49 recombination endonuclease VII; Provisional	82.38

>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

Probab=98.73  E-value=8.2e-09  Score=63.37  Aligned_cols=32  Identities=41%  Similarity=0.677  Sum_probs=29.5

Q ss_pred             CCCCCCCC------CccceeeeccCCCCCchhhhhhhc
Q 032576          105 VGCPGCLC------HDYDHILPYSKGGKSTLENCQVLQ  136 (137)
Q Consensus       105 ~~C~~Cg~------~EiDHIiP~SkGG~t~~eNlqlLc  136 (137)
                      +.|.+|+.      +++|||+|++.||.++.+||++||
T Consensus        12 ~~C~~c~~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c   49 (57)
T cd00085          12 GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLC   49 (57)
T ss_pred             CcCccCCCcCCCCCceEEeecchhhCCCCchHHhHHHH
Confidence            47999985      599999999999999999999998

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.

>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]

Probab=98.65  E-value=4.9e-09  Score=64.20  Aligned_cols=30  Identities=47%  Similarity=0.690  Sum_probs=21.3

Q ss_pred             CCCCCC-------CccceeeeccCCCCCchhhhhhhc
Q 032576          107 CPGCLC-------HDYDHILPYSKGGKSTLENCQVLQ  136 (137)
Q Consensus       107 C~~Cg~-------~EiDHIiP~SkGG~t~~eNlqlLc  136 (137)
                      |++|+.       +++|||+|++.||.++++||++||
T Consensus         1 C~~C~~~~~~~~~~~v~Hi~~~~~gg~~~~~Nl~~lC   37 (47)
T PF01844_consen    1 CQYCGKPGSDNESLHVHHIIPRSKGGKNDLENLILLC   37 (47)
T ss_dssp             -TTT--B--GG-GEEEEESS-TTTT---STTTEEEEE
T ss_pred             CCCCCCcCccCcceEeECcCchhcCCCCCHHHHHHHh
Confidence            677765       499999999999999999999998

This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.

>smart00507 HNHc HNH nucleases

Probab=98.49  E-value=3e-08  Score=59.78  Aligned_cols=33  Identities=36%  Similarity=0.572  Sum_probs=30.1

Q ss_pred             CCCCCCCC-----CccceeeeccCCCCCchhhhhhhcC
Q 032576          105 VGCPGCLC-----HDYDHILPYSKGGKSTLENCQVLQV  137 (137)
Q Consensus       105 ~~C~~Cg~-----~EiDHIiP~SkGG~t~~eNlqlLc~  137 (137)
                      +.|..|+.     +++|||+|++.||.++.+||++||.
T Consensus        11 ~~C~~C~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~   48 (52)
T smart00507       11 GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCP   48 (52)
T ss_pred             CCCcCCcCCCCCCeEEEecCChhcCCCCChHhCeecCh
Confidence            68999975     5999999999999999999999984

>PF13395 HNH_4: HNH endonuclease

Probab=98.33  E-value=2e-07  Score=60.50  Aligned_cols=30  Identities=37%  Similarity=0.661  Sum_probs=26.6

Q ss_pred             CCCCCC-----------CccceeeeccCCCCCchhhhhhhc
Q 032576          107 CPGCLC-----------HDYDHILPYSKGGKSTLENCQVLQ  136 (137)
Q Consensus       107 C~~Cg~-----------~EiDHIiP~SkGG~t~~eNlqlLc  136 (137)
                      |.+||.           +++|||+|+|.||.+.+.|+.+.|
T Consensus         1 C~Y~g~~i~~~~l~~~~~~iDHiiP~s~~~~~s~~Nlvl~~   41 (54)
T PF13395_consen    1 CPYCGKPISIENLFKNKYEIDHIIPRSRGGDDSFWNLVLCC   41 (54)
T ss_pred             CCCCCCCCChhhcccCCceeEEEecccccCCCCcchhheEC
Confidence            677766           389999999999999999999876

>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family

Probab=98.22  E-value=7.8e-07  Score=83.67  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             CCCCCCCCC------------ccceeeeccCCCCCchhhhhhhcC
Q 032576          105 VGCPGCLCH------------DYDHILPYSKGGKSTLENCQVLQV  137 (137)
Q Consensus       105 ~~C~~Cg~~------------EiDHIiP~SkGG~t~~eNlqlLc~  137 (137)
                      +.|++||..            ++|||+|+|+||.++++|+.+.|.
T Consensus       582 ~~C~Y~g~~i~~~~l~~~~~~~iDHIiP~s~~~dds~~N~vl~~~  626 (805)
T TIGR01865       582 GKCMYTGKEIDIDDLFDLSYYEIDHILPQSRSFDDSISNKVLVLA  626 (805)
T ss_pred             CcCCCCCCcCccccccCCCCCceeeecccccCCCCcHHHHHHHhH
Confidence            889999872            799999999999999999999884

CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.

>COG1403 McrA Restriction endonuclease [Defense mechanisms]

Probab=97.77  E-value=1e-05  Score=57.56  Aligned_cols=33  Identities=39%  Similarity=0.583  Sum_probs=29.0

Q ss_pred             CCCCCCCC----CccceeeeccCCCCCchhhhhhhcC
Q 032576          105 VGCPGCLC----HDYDHILPYSKGGKSTLENCQVLQV  137 (137)
Q Consensus       105 ~~C~~Cg~----~EiDHIiP~SkGG~t~~eNlqlLc~  137 (137)
                      +.|.+|+.    .++|||+|.+.||.+..+|+++||.
T Consensus        70 ~~c~~c~~~~~~~~~dHiip~~~g~~~~~~Nl~~lc~  106 (146)
T COG1403          70 GLCQYCGSVGTDLEVDHIVPLSRGGASAWENLETLCE  106 (146)
T ss_pred             ccccccCCcCCCCceeeEeecccCCcchHHHHHHHHH
Confidence            57887765    4999999999999999999999983

>PRK11295 hypothetical protein; Provisional

Probab=97.62  E-value=1.4e-05  Score=60.13  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=30.0

Q ss_pred             cCCCCCCCCCC---------ccceeeeccCCCCCchhhhhhhc
Q 032576          103 KLVGCPGCLCH---------DYDHILPYSKGGKSTLENCQVLQ  136 (137)
Q Consensus       103 ~~~~C~~Cg~~---------EiDHIiP~SkGG~t~~eNlqlLc  136 (137)
                      +.+.|..|+..         .+|||+|...|+.++.+|||.||
T Consensus        23 ~p~lC~~Cgr~~~~a~~~a~vVDHIip~~~gd~~D~sNLQ~LC   65 (113)
T PRK11295         23 YPWVCGRCSREFVYSNLRELTVHHIDHDHDNNPEDGSNWELLC   65 (113)
T ss_pred             CcchhhhhcChhccCCCCCceeeccCCCCCCCCCchhHHHHHh
Confidence            33579999873         99999999999999999999999

>TIGR02646 conserved hypothetical protein TIGR02646

Probab=97.37  E-value=0.00015  Score=54.87  Aligned_cols=33  Identities=21%  Similarity=0.077  Sum_probs=29.3

Q ss_pred             CCCCCCCC------CccceeeeccCCCCCch--hhhhhhcC
Q 032576          105 VGCPGCLC------HDYDHILPYSKGGKSTL--ENCQVLQV  137 (137)
Q Consensus       105 ~~C~~Cg~------~EiDHIiP~SkGG~t~~--eNlqlLc~  137 (137)
                      +.|.+|+.      +++|||+|.+..+...+  +||.+.|.
T Consensus        25 ~~C~YC~~~~~~~~~~ieH~~Pk~~~~~~~~~~~NL~~sC~   65 (144)
T TIGR02646        25 GLCAYCEREIELLGSHIEHFRPKGAYPPLTLDWSNLFGSCH   65 (144)
T ss_pred             CCcCccCCCcCCCCcceeeecccCCChhhhcChhhchhhcc
Confidence            78999988      59999999999998877  79999884

Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins.

>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family

Probab=93.62  E-value=0.034  Score=52.64  Aligned_cols=29  Identities=28%  Similarity=0.300  Sum_probs=23.4

Q ss_pred             eeeecCCCCCCCCCC-----ccceeeeccCCCCC
Q 032576           99 VVFRKLVGCPGCLCH-----DYDHILPYSKGGKS  127 (137)
Q Consensus        99 vv~r~~~~C~~Cg~~-----EiDHIiP~SkGG~t  127 (137)
                      +.....|.||+||..     |+|||+|.|+-|++
T Consensus       755 Ik~fs~gIcpY~Ga~iG~~gEiDHI~PRSht~k~  788 (802)
T TIGR03031       755 IKNFSMGICPYKGASIGGQGEIDHIYPRSHSKKH  788 (802)
T ss_pred             HHHHhccCCCCCCCCCCCcccccccccccccccc
Confidence            344466899999985     99999999987764

Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.

>PF13391 HNH_2: HNH endonuclease

Probab=90.83  E-value=0.086  Score=33.75  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=18.5

Q ss_pred             CccceeeeccCC--CCC-----------chhhhhhhc
Q 032576          113 HDYDHILPYSKG--GKS-----------TLENCQVLQ  136 (137)
Q Consensus       113 ~EiDHIiP~SkG--G~t-----------~~eNlqlLc  136 (137)
                      .|+-||+|++.+  +..           +.+|.-+|+
T Consensus        15 ~eaaHI~P~s~~~~~~~~~~~~~~~~~~~~~Ngl~L~   51 (66)
T PF13391_consen   15 LEAAHIVPFSLGSWWMNNWFGEYANDWISPSNGLLLR   51 (66)
T ss_pred             EEEEEcccCccCCCchhhhhhhhhccCCCccEEEEcC
Confidence            389999999987  555           566777775

>PF14279 HNH_5: HNH endonuclease

Probab=84.09  E-value=0.56  Score=32.36  Aligned_cols=25  Identities=40%  Similarity=0.683  Sum_probs=20.2

Q ss_pred             CCCCCCC------ccceeeeccCCCCCchhh
Q 032576          107 CPGCLCH------DYDHILPYSKGGKSTLEN  131 (137)
Q Consensus       107 C~~Cg~~------EiDHIiP~SkGG~t~~eN  131 (137)
                      |.+|..-      ...||+|-|-||.....|
T Consensus         1 Ci~C~~~~~~~~~s~EHIIP~sLGG~~~~~~   31 (71)
T PF14279_consen    1 CIYCNKEKSESNFSEEHIIPESLGGKLKINN   31 (71)
T ss_pred             CccCCCCCCccCCCccccCchhcCCcccccc
Confidence            7788762      478999999999877765

>COG3440 Predicted restriction endonuclease [Defense mechanisms]

Probab=83.68  E-value=0.65  Score=40.39  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=29.7

Q ss_pred             CCCCCCCC----------CccceeeeccCCCCCchhhhhhhcC
Q 032576          105 VGCPGCLC----------HDYDHILPYSKGGKSTLENCQVLQV  137 (137)
Q Consensus       105 ~~C~~Cg~----------~EiDHIiP~SkGG~t~~eNlqlLc~  137 (137)
                      ++|..||.          -+.-||.|.+++|.+.+.|.-.||.
T Consensus       193 ~RCalCG~e~~~~~~q~ii~~ahikp~~q~y~~~i~N~LaLC~  235 (301)
T COG3440         193 YRCALCGLEVLDFLEQNIIKAAHIKPFQQFYPDRIINGLALCK  235 (301)
T ss_pred             chhhhhcchhhhhhHHHHhhhhhcCcccccCcccccccchhch
Confidence            78999994          1888999999999999999999984

>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]

Probab=82.89  E-value=0.71  Score=45.39  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=26.4

Q ss_pred             CCCCCCCC------------CccceeeeccCCCCCchhhhhhh
Q 032576          105 VGCPGCLC------------HDYDHILPYSKGGKSTLENCQVL  135 (137)
Q Consensus       105 ~~C~~Cg~------------~EiDHIiP~SkGG~t~~eNlqlL  135 (137)
                      +.|-+-|.            .|+|||+|.|.==.++.+|..+.
T Consensus       572 gkcmYsgqei~I~rL~dk~~~eIDHi~P~Sr~~DDS~~NkVLv  614 (1088)
T COG3513         572 GKCMYSGQEIDIHRLSDKGYYEIDHIVPQSRTWDDSIDNKVLV  614 (1088)
T ss_pred             CcccccCcccchhhcccccceeeceeccccccccccccceeEE
Confidence            78888877            39999999999988999998764

>PHA02565 49 recombination endonuclease VII; Provisional

Probab=82.38  E-value=1.5  Score=35.06  Aligned_cols=18  Identities=28%  Similarity=0.392  Sum_probs=15.2

Q ss_pred             CCCCCCCC--------Cccceeeecc
Q 032576          105 VGCPGCLC--------HDYDHILPYS  122 (137)
Q Consensus       105 ~~C~~Cg~--------~EiDHIiP~S  122 (137)
                      +.|+.|+.        +++||..+.+
T Consensus        21 G~CaiC~~~l~~~~~~~~vDHDH~l~   46 (157)
T PHA02565         21 GICPLCKRELDGDVSKNHLDHDHELN   46 (157)
T ss_pred             CcCCCCCCccCCCccccccCCCCCCC
Confidence            78999986        3899998877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	98.81
1fr2_B	134	Colicin E9; protein-protein complex, zinc containi	95.85
2jb0_B	131	Colicin E7; hydrolase/inhibitor, hydrolase/inhibit	95.31
7cei_B	206	Protein (colicin E7 immunity protein); DNAse, E-gr	91.58

>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...

Probab=95.85  E-value=0.0041  Score=47.15  Aligned_cols=63  Identities=21%  Similarity=0.427  Sum_probs=42.7

Q ss_pred             CCCCCCCCH--HHHHHHHHhhh---h-cc------------CCCCcchhccccCCeeeecCCCCCCCCCCccceeeeccC
Q 032576           62 TANPRSFPY--SVKQQCWEKAE---K-VR------------GRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSK  123 (137)
Q Consensus        62 ~~~~R~F~~--~~k~~~w~k~~---~-v~------------G~dp~r~R~Da~Gnvv~r~~~~C~~Cg~~EiDHIiP~Sk  123 (137)
                      .++.|.|..  ++|+++|..-.   . +.            |+.|-.-..|-+|.           =..+|+||+.|.+.
T Consensus        41 kLRGr~F~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rmk~G~aP~~~~~e~vG~-----------r~kfelHH~~~I~~  109 (134)
T 1fr2_B           41 KLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFTPKNQQVGG-----------RKVYELHHDKPISQ  109 (134)
T ss_dssp             HHTTCEESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCBCCGGGCBTT-----------BCBCEEEESSCGGG
T ss_pred             HhcCCcCCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHHHCCCCCCCcchhhcCC-----------eeEEEEEecchhhc
Confidence            677788887  99999996542   1 13            33333222232221           12379999999999


Q ss_pred             CCC-Cchhhhhhh
Q 032576          124 GGK-STLENCQVL  135 (137)
Q Consensus       124 GG~-t~~eNlqlL  135 (137)
                      ||. .+++||.++
T Consensus       110 GG~VYdlDNL~i~  122 (134)
T 1fr2_B          110 GGEVYDMDNIRVT  122 (134)
T ss_dssp             TCCSSBGGGEEEE
T ss_pred             CCeeeeeecEEEc
Confidence            999 899999886

>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B

Probab=95.31  E-value=0.0017  Score=49.07  Aligned_cols=63  Identities=21%  Similarity=0.449  Sum_probs=40.9

Q ss_pred             CCCCCCCCH--HHHHHHHHhhh---h-c------------cCCCCcchhccccCCeeeecCCCCCCCCCCccceeeeccC
Q 032576           62 TANPRSFPY--SVKQQCWEKAE---K-V------------RGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSK  123 (137)
Q Consensus        62 ~~~~R~F~~--~~k~~~w~k~~---~-v------------~G~dp~r~R~Da~Gnvv~r~~~~C~~Cg~~EiDHIiP~Sk  123 (137)
                      .+..|.|..  ++++++|..-.   . +            .|+.|-.-..|-+|.           =..+|+||+.|.+.
T Consensus        38 kLRGr~F~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rmk~G~aP~~~~~e~vG~-----------r~kfelHH~~~I~~  106 (131)
T 2jb0_B           38 KLRDKEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGK-----------RTSFELHHEKPISQ  106 (131)
T ss_dssp             HHTTCEESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCBCCGGGCBTT-----------BCBCEEEESSCCC-
T ss_pred             HHcCCcCCCHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHCCCCCCCCchhhcCC-----------eeEEEEEeechhhc
Confidence            567788887  99999996532   1 1            333333333333321           12379999999999


Q ss_pred             CCC-Cchhhhhhh
Q 032576          124 GGK-STLENCQVL  135 (137)
Q Consensus       124 GG~-t~~eNlqlL  135 (137)
                      ||. .+++||.++
T Consensus       107 GG~VYdlDNL~i~  119 (131)
T 2jb0_B          107 NGGVYDMDNISVV  119 (131)
T ss_dssp             -CCSSBGGGEEEE
T ss_pred             CCeeeeeeeEEEc
Confidence            999 899999886

>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1

Probab=91.58  E-value=0.063  Score=43.14  Aligned_cols=70  Identities=20%  Similarity=0.349  Sum_probs=42.3

Q ss_pred             CCCCCCCC--HHHHHHHHHhhhhccCCCCcchhccccCCeeeecCCCCCCC---------CCCccceeeeccCCCC-Cch
Q 032576           62 TANPRSFP--YSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGC---------LCHDYDHILPYSKGGK-STL  129 (137)
Q Consensus        62 ~~~~R~F~--~~~k~~~w~k~~~v~G~dp~r~R~Da~Gnvv~r~~~~C~~C---------g~~EiDHIiP~SkGG~-t~~  129 (137)
                      .+..|.|.  ..+++++|.--.    -||+...+=--+|...-..+.-|+-         ..||+||+.|.+.||. -++
T Consensus       113 KLRGR~F~sFD~FR~AFWkeVa----~DPeLskQF~~~N~~~Mk~G~AP~ap~~e~vG~R~kfELHH~~~I~~GG~VYDi  188 (206)
T 7cei_B          113 KLRDKEFKSFDDFRKKFWEEVS----KDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGVYDM  188 (206)
T ss_dssp             HHTTCBCSSHHHHHHHHHHHHT----TCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCSSSSCCSSBT
T ss_pred             HhcCCcCCCHHHHHHHHHHHHc----cCHHHHHHHhHHHHHHHHCCCCCCCChhhhcCCeeeEEeecCcccccCCeeecc
Confidence            56677776  589999997643    2333333211112211111222221         1379999999999999 599


Q ss_pred             hhhhhh
Q 032576          130 ENCQVL  135 (137)
Q Consensus       130 eNlqlL  135 (137)
                      +||.++
T Consensus       189 DNLrI~  194 (206)
T 7cei_B          189 DNISVV  194 (206)
T ss_dssp             TSEEEE
T ss_pred             cceeec
Confidence            999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d2gykb1	130	DNase domain of colicin E9 {Escherichia coli [TaxI	91.78
d2jb0b1	124	DNase domain of colicin E7 {Escherichia coli [TaxI	90.48

>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: HNH-motif
domain: DNase domain of colicin E9
species: Escherichia coli [TaxId: 562]

Probab=91.78  E-value=0.022  Score=41.16  Aligned_cols=63  Identities=22%  Similarity=0.439  Sum_probs=40.3

Q ss_pred             CCCCCCCC--HHHHHHHHHhhhh----c------------cCCCCcchhccccCCeeeecCCCCCCCCCCccceeeeccC
Q 032576           62 TANPRSFP--YSVKQQCWEKAEK----V------------RGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSK  123 (137)
Q Consensus        62 ~~~~R~F~--~~~k~~~w~k~~~----v------------~G~dp~r~R~Da~Gnvv~r~~~~C~~Cg~~EiDHIiP~Sk  123 (137)
                      ++..|.|.  .++++++|..-..    +            .|+.|-.-..|-+|..           ..+|+||+.|.+.
T Consensus        38 kLrGr~F~sFd~FR~afW~~Va~DpeL~~QF~~~N~~rmk~G~AP~a~~~e~~G~r-----------~kfElHH~~~I~~  106 (130)
T d2gykb1          38 KLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSNKSSVSKGYSPFTPKNQQVGGR-----------KVYELHHDKPISQ  106 (130)
T ss_dssp             HHTTCEESSHHHHHHHHHHHHHHCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTB-----------CBCEEEESSCGGG
T ss_pred             HhcCCccCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHHhCCCCCCCChhhhcCCe-----------eEEEeccCccccc
Confidence            45555555  4889999975431    1            3333333334433321           1379999999999


Q ss_pred             CCCC-chhhhhhh
Q 032576          124 GGKS-TLENCQVL  135 (137)
Q Consensus       124 GG~t-~~eNlqlL  135 (137)
                      ||.= +++||.++
T Consensus       107 GG~VYdiDNLrI~  119 (130)
T d2gykb1         107 GGEVYDMDNIRVT  119 (130)
T ss_dssp             TCCSSBGGGEEEE
T ss_pred             CCeeeeccceeec
Confidence            9965 88899886

>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: HNH-motif
domain: DNase domain of colicin E7
species: Escherichia coli [TaxId: 562]

Probab=90.48  E-value=0.065  Score=38.32  Aligned_cols=63  Identities=22%  Similarity=0.460  Sum_probs=38.3

Q ss_pred             CCCCCCCC--HHHHHHHHHhhhh----c------------cCCCCcchhccccCCeeeecCCCCCCCCCCccceeeeccC
Q 032576           62 TANPRSFP--YSVKQQCWEKAEK----V------------RGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSK  123 (137)
Q Consensus        62 ~~~~R~F~--~~~k~~~w~k~~~----v------------~G~dp~r~R~Da~Gnvv~r~~~~C~~Cg~~EiDHIiP~Sk  123 (137)
                      ++..|.|.  .++++++|..-..    +            .|+.|-.-..|-+|..           ..+|+||+.|.+.
T Consensus        35 kLrGr~F~sFd~FR~afW~~Va~DpeL~~QF~~~N~~rmk~G~AP~a~~~e~vG~r-----------~kfElHH~~~I~~  103 (124)
T d2jb0b1          35 KLRDKEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKR-----------TSFELHHEKPISQ  103 (124)
T ss_dssp             HHTTCEESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHTTCCCBCCGGGCBTTB-----------CBCEEEESSCCC-
T ss_pred             HhcCCcCCCHHHHHHHHHHHHhcCHHHHHHhCHHHHHHHhCCCCCCCChhhhcCCe-----------eEEEeccCccccc
Confidence            34455554  4789999975421    1            3444444444444331           1379999999999


Q ss_pred             CCCC-chhhhhhh
Q 032576          124 GGKS-TLENCQVL  135 (137)
Q Consensus       124 GG~t-~~eNlqlL  135 (137)
                      ||.= +++||+++
T Consensus       104 GG~VYdiDNLrI~  116 (124)
T d2jb0b1         104 NGGVYDMDNISVV  116 (124)
T ss_dssp             -CCSSBGGGEEEE
T ss_pred             CCeeeeccceeec
Confidence            9965 88999886