Citrus Sinensis ID: 032597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKV
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHccEEEEEccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEccHHHHHHHHHHccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHcHcccccccccccccccccccccEEEcccccEEEEccccHHHHccEEEEEEccccccccccccccEEEEEccccccccccccccccccccHHHcccEEEEEccHHHHHHHHHHcccEEEEEccccccccc
Coil and Loop (DISEMBL)
MAQSLQRIWshgrtvrgtvcpfsrafsadalvevkpgeigmvsgipeehlRRRVViytpartatqqgsgklgrWKINFMStqkwenplmgwtstgdpyanvgdaglsfdSKEAAREFAERHGweyvvrkphrpllkv
Flexible Loop (DISEMBL)
MAQSLQriwshgrtvrgtvcpFSRAFSADAlvevkpgeigmvsgipeehlRRRVVIytpartatqqgsgklgrwKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAerhgweyvvrkphrpllkv
Low Complexity Region (SEG)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKV
Disordered region (IsUnstruct)
******RIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFD*****REFAERHGWEYVV**********
Disordered Region (DISOPRED)
****************************************MVSGIPEEHLRRRVVIYTP***********LGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHR*****
Disordered Region (DISEMBL)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKV
Disordered Region (DISPRO)
**************************SADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPH******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQSLQRIWSHGRTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q9FJW4	154	NADH dehydrogenase [ubiqu	yes	no	0.912	0.811	0.713	1e-48
Q5XIF3	175	NADH dehydrogenase [ubiqu	yes	no	0.751	0.588	0.421	9e-20
O43181	175	NADH dehydrogenase [ubiqu	yes	no	0.678	0.531	0.432	2e-19
Q0MQH0	175	NADH dehydrogenase [ubiqu	N/A	no	0.678	0.531	0.432	2e-19
P0CB96	175	NADH dehydrogenase [ubiqu	N/A	no	0.678	0.531	0.443	3e-19
P0CB95	175	NADH dehydrogenase [ubiqu	yes	no	0.678	0.531	0.443	3e-19
Q66XS7	175	NADH dehydrogenase [ubiqu	N/A	no	0.678	0.531	0.432	3e-19
Q02375	175	NADH dehydrogenase [ubiqu	yes	no	0.678	0.531	0.432	3e-19
Q9CXZ1	175	NADH dehydrogenase [ubiqu	yes	no	0.635	0.497	0.461	4e-19
Q0MQH1	175	NADH dehydrogenase [ubiqu	yes	no	0.678	0.531	0.422	2e-18

>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1

 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 109/129 (84%), Gaps = 4/129 (3%)

Query: 13  RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
           RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct: 9   RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query: 69  GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVR 128
           GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y V+
Sbjct: 69  GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVK 128

Query: 129 KPHRPLLKV 137
           KP+ PLLKV
Sbjct: 129 KPNTPLLKV 137

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 11/114 (9%)

Query: 23  SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMST 81
           ++  + D  ++V P     ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + 
Sbjct: 50  TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTR 104

Query: 82  QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRP 133
           ++WENPLMGW ST DP +N+    L+F +KE A  FAE+HGW Y V  RK  +P
Sbjct: 105 ERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKP 155

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 4/97 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
           P +N+    L+F +KE A  FAE++GW Y + +   P
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVP 153

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 4/97 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
           P +N+    L+F +KE A  FAE++GW Y + +   P
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVP 153

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 4/97 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
           P +N+    L+F +KE A  FAE++GW Y V +   P
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVP 153

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 4/97 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
           P +N+    L+F +KE A  FAE++GW Y V +   P
Sbjct: 120 PLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVP 153

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW+ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
           P +N+    L+F +KE A  FAE++GW + V +   P
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSFDVEERKVP 153

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gecko japonicus (taxid: 146911)

>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 4/97 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+  I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
           P +N+    L+F +KE A  FAE++GW Y V +   P
Sbjct: 120 PLSNL---VLTFSTKEDAVAFAEKNGWSYDVEERKVP 153

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 4/91 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVV 127
           P +N+    L+F +KE A  FAE++GW Y V
Sbjct: 120 PLSNM---VLTFSAKEDAIAFAEKNGWSYDV 147

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 4/97 (4%)

Query: 38  EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
           +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 97  PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
           P +N+    L+  +KE A  FAE++GW Y + +   P
Sbjct: 120 PLSNM---VLTXSTKEDAVSFAEKNGWSYDIEERKVP 153

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2158621	154	FRO1 "FROSTBITE1" [Arabidopsis	0.912	0.811	0.713	1.4e-46
ZFIN|ZDB-GENE-050522-421	168	ndufs4 "NADH dehydrogenase (ub	0.890	0.726	0.380	1.7e-20
UNIPROTKB|Q8QGH0	116	NDUFS4 "NADH dehydrogenase" [G	0.678	0.801	0.453	9.2e-20
RGD|1594380	175	Ndufs4 "NADH dehydrogenase (ub	0.700	0.548	0.450	9.2e-20
UNIPROTKB|J9PB72	175	NDUFS4 "Uncharacterized protei	0.700	0.548	0.441	3.1e-19
UNIPROTKB|O43181	175	NDUFS4 "NADH dehydrogenase [ub	0.700	0.548	0.441	3.1e-19
UNIPROTKB|Q0MQH0	175	NDUFS4 "NADH dehydrogenase [ub	0.700	0.548	0.441	3.1e-19
UNIPROTKB|P0CB95	175	NDUFS4 "NADH dehydrogenase [ub	0.700	0.548	0.450	4e-19
UNIPROTKB|P0CB96	175	NDUFS4 "NADH dehydrogenase [ub	0.700	0.548	0.450	4e-19
UNIPROTKB|Q02375	175	NDUFS4 "NADH dehydrogenase [ub	0.700	0.548	0.441	5.1e-19

TAIR|locus:2158621 FRO1 "FROSTBITE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 92/129 (71%), Positives = 109/129 (84%)

Query:    13 RTVR--GTVCPFSRAFSADALVE--VKPGEIGMVSGIPEEHLRRRVVIYTPARTATQQGS 68
             RT+R   T+   +R F+ DA+VE   K GEIG VSGIPEEHL R+V+IY+PARTATQ GS
Sbjct:     9 RTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGS 68

Query:    69 GKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVR 128
             GKLG+WKINF+ST KWENPLMGWTSTGDPYANVGD+ L+FDS+EAA+ FAERHGW+Y V+
Sbjct:    69 GKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVK 128

Query:   129 KPHRPLLKV 137
             KP+ PLLKV
Sbjct:   129 KPNTPLLKV 137

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0009631 "cold acclimation" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

ZFIN|ZDB-GENE-050522-421 ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 48/126 (38%), Positives = 77/126 (61%)

Query:    13 RTVRGTVCPFSRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKL 71
             R+V  + C  +    +  +   +  +I  ++G+PEEH++ R+V I+ PAR A Q G    
Sbjct:    28 RSVSTSGCRLAEGQGSQLITVDEKLDISTLTGVPEEHIKTRKVRIFVPARNAMQSGVKNT 87

Query:    72 GRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPH 131
              +WKI+F + ++WENPLMGW+ST DP +N+    L+F +KE A  FAE++GW Y + +  
Sbjct:    88 HKWKIDFDTRERWENPLMGWSSTADPLSNMV---LTFSTKEDAIAFAEKNGWSYDITEKR 144

Query:   132 RPLLKV 137
              P  +V
Sbjct:   145 VPKPRV 150

GO:0022900 "electron transport chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

UNIPROTKB|Q8QGH0 NDUFS4 "NADH dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 44/97 (45%), Positives = 64/97 (65%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+P+EH++ RRV I+ PAR A Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:     1 DISTLTGVPDEHIKTRRVHIFVPARNAMQAGVNNTKKWKMEFDNRERWENPLMGWASTAD 60

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRP 133
             P +N+    L+F +KE A  FAE++GW Y V +   P
Sbjct:    61 PLSNMV---LTFSTKEDAIAFAEKNGWNYDVEEKKIP 94

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

RGD|1594380 Ndufs4 "NADH dehydrogenase (ubiquinone) Fe-S protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 46/102 (45%), Positives = 66/102 (64%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             ++  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DVTPLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRPLLK 136
             P +N+    L+F +KE A  FAE+HGW Y V  RK  +P  K
Sbjct:   120 PLSNMV---LTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSK 158

GO:0001932 "regulation of protein phosphorylation" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISO;IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA;ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0045333 "cellular respiration" evidence=IEA;ISO

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0051591 "response to cAMP" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

UNIPROTKB|J9PB72 NDUFS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/102 (44%), Positives = 66/102 (64%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARDNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRPLLK 136
             P +N+    L+F +KE A  FAE++GW Y +  RK  +P  K
Sbjct:   120 PLSNMV---LTFSTKEDAAAFAEKNGWSYDIEERKVPKPKSK 158

GO:0022900 "electron transport chain" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|O43181 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/102 (44%), Positives = 66/102 (64%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRPLLK 136
             P +N+    L+F +KE A  FAE++GW Y +  RK  +P  K
Sbjct:   120 PLSNMV---LTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSK 158

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IMP

GO:0051591 "response to cAMP" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;IMP

GO:0045333 "cellular respiration" evidence=IMP

GO:0048146 "positive regulation of fibroblast proliferation" evidence=IMP

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q0MQH0 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 45/102 (44%), Positives = 66/102 (64%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRPLLK 136
             P +N+    L+F +KE A  FAE++GW Y +  RK  +P  K
Sbjct:   120 PLSNMV---LTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSK 158

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|P0CB95 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 46/102 (45%), Positives = 66/102 (64%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRPLLK 136
             P +N+    L+F +KE A  FAE++GW Y V  RK  +P  K
Sbjct:   120 PLSNMV---LTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSK 158

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|P0CB96 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Pongo pygmaeus (taxid:9600)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 46/102 (45%), Positives = 66/102 (64%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRPLLK 136
             P +N+    L+F +KE A  FAE++GW Y V  RK  +P  K
Sbjct:   120 PLSNMV---LTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSK 158

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0051591 "response to cAMP" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

UNIPROTKB|Q02375 NDUFS4 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 45/102 (44%), Positives = 65/102 (63%)

Query:    38 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGD 96
             +I  ++G+PEEH++ R+  I+ PAR   Q G     +WK+ F + ++WENPLMGW ST D
Sbjct:    60 DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query:    97 PYANVGDAGLSFDSKEAAREFAERHGWEYVV--RKPHRPLLK 136
             P +N+    L+F +KE A  FAE++GW Y V  RK  +P  K
Sbjct:   120 PLSNLV---LTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSK 158

GO:0051591 "response to cAMP" evidence=ISS

GO:0048146 "positive regulation of fibroblast proliferation" evidence=ISS

GO:0045333 "cellular respiration" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0019933 "cAMP-mediated signaling" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJW4	NDUS4_ARATH	No assigned EC number	0.7131	0.9124	0.8116	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010578001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_270, whole genome shotgun sequence); (154 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028496001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (399 aa)			•	•		•	•		0.676
	GSVIVG00022315001	RecName- Full=NADH-ubiquinone oxidoreductase 75 kDa subunit; EC=1.6.5.3; (746 aa)				•		•	•		0.676
	GSVIVG00023838001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (254 aa)				•		•	•		0.667
	GSVIVG00036386001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (223 aa)				•	•	•	•		0.644
	nad9	SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence;; Core subunit [...] (190 aa)				•		•	•		0.640
	GSVIVG00014042001	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (158 aa)			•	•		•			0.577
	GSVIVG00032166001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (209 aa)				•		•	•		0.548
	GSVIVG00025731001	SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (475 aa)				•		•	•		0.490
	GSVIVG00030686001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (100 aa)				•		•			0.460
	GSVIVG00037763001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (169 aa)				•		•	•		0.437

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
pfam04800	101	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit co	7e-36

>gnl|CDD|218273 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region

 Score =  118 bits (298), Expect = 7e-36
 Identities = 44/86 (51%), Positives = 55/86 (63%), Gaps = 2/86 (2%)

Query: 52  RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
           R   IY PAR A Q G  +  +W + F  + +WENPLMGWTSTGDP +N  +  L+F +K
Sbjct: 1   RTARIYRPARNAMQSGRARTKKWTLEFDRSARWENPLMGWTSTGDPLSNQME--LTFPTK 58

Query: 112 EAAREFAERHGWEYVVRKPHRPLLKV 137
           EAA  FAER GWEY V +P+ P  K 
Sbjct: 59  EAAIAFAERQGWEYDVEEPNAPKAKP 84

Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG3389	178	consensus NADH:ubiquinone oxidoreductase, NDUFS4/1	100.0
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	100.0
PF09954	62	DUF2188: Uncharacterized protein conserved in bact	86.41
PF08727	57	P3A: Poliovirus 3A protein like; InterPro: IPR0148	80.6
PHA02552	151	4 head completion protein; Provisional	80.32

>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]

Probab=100.00  E-value=1.4e-48  Score=304.08  Aligned_cols=115  Identities=60%  Similarity=1.063  Sum_probs=108.5

Q ss_pred             ccccccccc-ccc--ccccccccccCCCcccc-cceEEEecCCCCCCCCCCCCCCCcEEEccCCCCccCCCcCccCCCCc
Q 032597           22 FSRAFSADA-LVE--VKPGEIGMVSGIPEEHL-RRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDP   97 (137)
Q Consensus        22 ~~r~fs~d~-~~~--~~~~e~~~vSG~P~e~~-~R~vrIY~Pak~amQSG~~~~~~W~LeFe~~~rw~nPLMGWtsS~D~   97 (137)
                      +.|.|+.|+ .|+  .+-+|||-|+|+|+||+ .|+||||.|+|++||||.+|+++|+|||+...+||||||||+|++||
T Consensus        42 la~~~~~Dak~ve~d~kld~i~~v~GvPeeH~~sRkvrIf~PAR~~tQSg~gntkkWkiefd~r~rWENPLMGWtsTaDP  121 (178)
T KOG3389|consen   42 LARPFATDAKVVESDYKLDEIGKVSGVPEEHLDSRKVRIFSPARTATQSGSGNTKKWKIEFDSRLRWENPLMGWTSTADP  121 (178)
T ss_pred             ccccccccceeEeehhhhcccccccCCChHHhcceeEEEecchhhhhhcccCCccceEEEecchhhccCccccccccCCc
Confidence            578999998 444  56678999999999999 69999999999999999999999999999999999999999999999


Q ss_pred             cCccCCceeeeCCHHHHHHHHHHcCCcEEEeCCCCCCCCC
Q 032597           98 YANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKV  137 (137)
Q Consensus        98 ~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~P~~~~~~~  137 (137)
                      ++|| |+.|.|+|+|||++|||||||+|.|++|+++++||
T Consensus       122 lsNv-gm~L~F~tkEdA~sFaEkngW~ydveep~~pk~K~  160 (178)
T KOG3389|consen  122 LSNV-GMALAFDTKEDAKSFAEKNGWDYDVEEPNTPKLKV  160 (178)
T ss_pred             cccc-ceeeeeccHHHHHHHHHHcCCcccccCCCCCcccc
Confidence            9999 58999999999999999999999999999999875

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=100.00  E-value=1.1e-44  Score=264.81  Aligned_cols=83  Identities=47%  Similarity=0.963  Sum_probs=60.8

Q ss_pred             ceEEEecCCCCCCCCCCCCCCCcEEEccCCCCccCCCcCccCCCCccCc-cCCceeeeCCHHHHHHHHHHcCCcEEEeCC
Q 032597           52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYAN-VGDAGLSFDSKEAAREFAERHGWEYVVRKP  130 (137)
Q Consensus        52 R~vrIY~Pak~amQSG~~~~~~W~LeFe~~~rw~nPLMGWtsS~D~~sq-v~~~~L~F~SkE~AIayaek~Gw~Y~V~~P  130 (137)
                      |+||||+|+|+|||||.+++++|+|||+..++|+|||||||||+||++| |   +|+|+|+||||+|||+|||+|+|++|
T Consensus         1 r~arIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v---~l~F~skE~Ai~yaer~G~~Y~V~~p   77 (101)
T PF04800_consen    1 RKARIYQPAKNAMQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSV---RLKFDSKEDAIAYAERNGWDYEVEEP   77 (101)
T ss_dssp             -EEEEE--SS--STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-C---EEEESSHHHHHHHHHHCT-EEEEE-S
T ss_pred             CeEEEeCCCCCCCCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCee---EeeeCCHHHHHHHHHHcCCeEEEeCC
Confidence            6899999999999999999999999999889999999999999999998 8   99999999999999999999999999


Q ss_pred             CCCCCCC
Q 032597          131 HRPLLKV  137 (137)
Q Consensus       131 ~~~~~~~  137 (137)
                      +.+++++
T Consensus        78 ~~r~~~~   84 (101)
T PF04800_consen   78 KKRKRRP   84 (101)
T ss_dssp             TT-----
T ss_pred             CCCcCCc
Confidence            9988754

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function

Probab=86.41  E-value=0.53  Score=30.66  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=18.0

Q ss_pred             eeeeCCHHHHHHHHHH----c-CCcEEEeC
Q 032597          105 GLSFDSKEAAREFAER----H-GWEYVVRK  129 (137)
Q Consensus       105 ~L~F~SkE~AIayaek----~-Gw~Y~V~~  129 (137)
                      ...|+|+++||++|++    + +-+..|..
T Consensus        22 ~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~   51 (62)
T PF09954_consen   22 SKTFDTKAEAIEAARELAKNQGGGELIIHG   51 (62)
T ss_pred             ccccCcHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            5689999999998764    3 55555544

>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses

Probab=80.60  E-value=1.1  Score=30.28  Aligned_cols=16  Identities=31%  Similarity=0.717  Sum_probs=11.0

Q ss_pred             HHHHHHHHHcCCcEEE
Q 032597          112 EAAREFAERHGWEYVV  127 (137)
Q Consensus       112 E~AIayaek~Gw~Y~V  127 (137)
                      ++-++|||++||-...
T Consensus        30 ~eV~~YC~~~GWIip~   45 (57)
T PF08727_consen   30 PEVREYCEEQGWIIPA   45 (57)
T ss_dssp             HHHHHHHHHHT--TT-
T ss_pred             HHHHHHHHHCCccccC
Confidence            5689999999996554

It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.

>PHA02552 4 head completion protein; Provisional

Probab=80.32  E-value=1.6  Score=34.26  Aligned_cols=70  Identities=19%  Similarity=0.291  Sum_probs=42.9

Q ss_pred             ceEEEecCCCCC-CCCCCCCCCCcEEEccCCCCccCCCcCccCCCCccCccCCceeee-----------CCHHHHHHHHH
Q 032597           52 RRVVIYTPARTA-TQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSF-----------DSKEAAREFAE  119 (137)
Q Consensus        52 R~vrIY~Pak~a-mQSG~~~~~~W~LeFe~~~rw~nPLMGWtsS~D~~sqv~~~~L~F-----------~SkE~AIayae  119 (137)
                      -++|.|-|+=-+ +.+|    ....+|.-+..+..+|.+-  ..-|+.+     ...|           +--++|.+||+
T Consensus        60 Gk~r~Y~PDFLV~~~dG----~~~lvEVKp~~~~~~p~~~--~~~~~~~-----~~~~~~~~~~w~~~~~K~~Aa~~~a~  128 (151)
T PHA02552         60 GKRRRYFMDFYVKVDNG----QKFLIEVKPKKETQPPKKP--AKMTTAA-----KKRFINEVYTWSVNTDKWKAARALCE  128 (151)
T ss_pred             CCeeeEcCcEEEEEeCC----CEEEEEEccHHHccCcccc--cccchhh-----hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            567788887433 2233    4778888887776666442  1111110     1122           12378999999


Q ss_pred             HcCCcEEEeCCCC
Q 032597          120 RHGWEYVVRKPHR  132 (137)
Q Consensus       120 k~Gw~Y~V~~P~~  132 (137)
                      ++||.|.|.....
T Consensus       129 ~~Gw~F~iiTE~~  141 (151)
T PHA02552        129 KKGWKFKIITEDE  141 (151)
T ss_pred             HcCCEEEEEEHHH
Confidence            9999999976543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
2jya_A	106	Nmr Solution Structure Of Protein Atu1810 From Agro		5e-08
2lju_A	108	Solution Structure Of Putative Oxidoreductase From		1e-07

>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr23, Ontario Centre For Structural Proteomics Target Atc1776 Length = 106

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 56  IYTPARTATQQGSGKLGRWKINF-MSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAA 114
           IY PA+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L+F+++E A
Sbjct: 8   IYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQA 64
Query: 115 REFAERHGWEYVVRKPHRPLLKV 137
             +A+R G EY V  P     KV
Sbjct: 65  EAYAQRKGIEYRVILPKEATRKV 87

>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From Ehrlichia Chaffeensis, Seattle Structural Genomics Center For Infectious Disease (Ssgcid) Length = 108

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 53  RVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYANVGDAGLSFDSK 111
           R  IY PA++  Q G  KL  WK+ F  S  ++  PLM WT + D    V    LSF ++
Sbjct: 13  RARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTR 69
Query: 112 EAAREFAERHGWEYVV 127
           E A  +A  H  +Y V
Sbjct: 70  ELAIAYAVAHKIDYTV 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2lju_A	108	Putative oxidoreductase; structural genomics, seat	4e-32
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	8e-30

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis} Length = 108

 Score =  109 bits (273), Expect = 4e-32
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 43  SGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYAN 100
            G  +E +   R  IY PA++  Q G  KL  WK+ F  S  ++  PLM WT + D    
Sbjct: 2   PGSMQEQVSNVRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQ 61

Query: 101 VGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKV 137
           V    LSF ++E A  +A  H  +Y V + +   +  
Sbjct: 62  VC---LSFTTRELAIAYAVAHKIDYTVLQDNPRTIVP 95

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str} Length = 106

 Score =  102 bits (257), Expect = 8e-30
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 52  RRVVIYTPARTATQQGSGKLGRWKINFM-STQKWENPLMGWTSTGDPYANVGDAGLSFDS 110
               IY PA+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L+F++
Sbjct: 4   MSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFET 60

Query: 111 KEAAREFAERHGWEYVVRKPHRPLLKV 137
           +E A  +A+R G EY V  P     KV
Sbjct: 61  QEQAEAYAQRKGIEYRVILPKEATRKV 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2lju_A	108	Putative oxidoreductase; structural genomics, seat	100.0
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	87.43
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	82.47
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	81.63

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=100.00  E-value=3.1e-46  Score=274.81  Aligned_cols=92  Identities=32%  Similarity=0.566  Sum_probs=84.4

Q ss_pred             ccccCCCcccccceEEEecCCCCCCCCCCCCCCCcEEEccCC-CCccCCCcCccCCCCccCccCCceeeeCCHHHHHHHH
Q 032597           40 GMVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFA  118 (137)
Q Consensus        40 ~~vSG~P~e~~~R~vrIY~Pak~amQSG~~~~~~W~LeFe~~-~rw~nPLMGWtsS~D~~sqv~~~~L~F~SkE~AIaya  118 (137)
                      |...|.|+.   ++||||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++||   +|+|+|+|+||+||
T Consensus         3 ~~~~~~~~~---~~arIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayA   76 (108)
T 2lju_A            3 GSMQEQVSN---VRARIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYA   76 (108)
T ss_dssp             --CCCCCCC---CEEEEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHH
T ss_pred             cccCCCCCC---CEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHH
Confidence            345666665   899999999999999999999999999996 69999999999999999999   99999999999999


Q ss_pred             HHcCCcEEEeCCCCCCCCC
Q 032597          119 ERHGWEYVVRKPHRPLLKV  137 (137)
Q Consensus       119 ek~Gw~Y~V~~P~~~~~~~  137 (137)
                      |||||+|+|++|+.+++++
T Consensus        77 ek~G~~y~V~ep~~~~~r~   95 (108)
T 2lju_A           77 VAHKIDYTVLQDNPRTIVP   95 (108)
T ss_dssp             HHTTCEEEEECSSCCCCCC
T ss_pred             HHcCCEEEEecCCcccCCc
Confidence            9999999999999988764

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=100.00  E-value=2.4e-45  Score=269.32  Aligned_cols=84  Identities=37%  Similarity=0.620  Sum_probs=77.2

Q ss_pred             cceEEEecCCCCCCCCCCCCCCCcEEEccCC-CCccCCCcCccCCCCccCccCCceeeeCCHHHHHHHHHHcCCcEEEeC
Q 032597           51 RRRVVIYTPARTATQQGSGKLGRWKINFMST-QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRK  129 (137)
Q Consensus        51 ~R~vrIY~Pak~amQSG~~~~~~W~LeFe~~-~rw~nPLMGWtsS~D~~sqv~~~~L~F~SkE~AIayaek~Gw~Y~V~~  129 (137)
                      .++||||+|+|+|||||++++++|+||||+. ++|+|||||||||+||++||   +|+|+|+|+||+|||||||+|+|++
T Consensus         3 ~m~arIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~e   79 (106)
T 2jya_A            3 HMSAKIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYRVIL   79 (106)
T ss_dssp             -CEEEEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEEECC
T ss_pred             CcEEEEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEeC
Confidence            4789999999999999999999999999985 79999999999999999999   9999999999999999999999999


Q ss_pred             CCCCCCCC
Q 032597          130 PHRPLLKV  137 (137)
Q Consensus       130 P~~~~~~~  137 (137)
                      |+.+++++
T Consensus        80 p~~~~~r~   87 (106)
T 2jya_A           80 PKEATRKV   87 (106)
T ss_dssp             CTTC----
T ss_pred             CCcCcCCc
Confidence            99988764

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=87.43  E-value=0.24  Score=38.74  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             eeeeCCHHHHHHHHHHcCCcEE
Q 032597          105 GLSFDSKEAAREFAERHGWEYV  126 (137)
Q Consensus       105 ~L~F~SkE~AIayaek~Gw~Y~  126 (137)
                      .|.|+|.|+++.||+++||...
T Consensus       199 ~L~f~s~~e~~~f~~~~gw~i~  220 (229)
T 4b0z_A          199 LLYLENTKETEKLAEERGWDIR  220 (229)
T ss_dssp             HTTCSSHHHHHHHHHHHTCEEE
T ss_pred             HhCCCCHHHHHHHHHHcCCEEe
Confidence            5899999999999999999763

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=82.47  E-value=0.61  Score=38.65  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             eeeeCCHHHHHHHHHHcCCcEE
Q 032597          105 GLSFDSKEAAREFAERHGWEYV  126 (137)
Q Consensus       105 ~L~F~SkE~AIayaek~Gw~Y~  126 (137)
                      .|.|+|.|++++||+.+||.+.
T Consensus       233 ~L~Fds~ee~~~F~~~~gl~~~  254 (316)
T 3t5v_A          233 MLLFNNRQEIIEFCNYYSIEII  254 (316)
T ss_dssp             HTTCSSHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCHHHHHHHHHHCCCeEe
Confidence            4889999999999999999996

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.63  E-value=0.53  Score=38.06  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=19.3

Q ss_pred             eeeeCCHHHHHHHHHHcCCcE
Q 032597          105 GLSFDSKEAAREFAERHGWEY  125 (137)
Q Consensus       105 ~L~F~SkE~AIayaek~Gw~Y  125 (137)
                      .|.|+|.+++++||+++||..
T Consensus       208 ~L~F~s~~e~~~F~~~~gW~~  228 (274)
T 4b4t_T          208 LLFFNNEKETEKFALERNWPI  228 (274)
T ss_dssp             HHTCCSHHHHHHHHHHTTCCC
T ss_pred             HhCCCCHHHHHHHHHHcCCEE
Confidence            488999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	88.87

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.87  E-value=0.059  Score=35.66  Aligned_cols=24  Identities=17%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             eeeCCHHHHHHHHHHcCCcEEEeC
Q 032597          106 LSFDSKEAAREFAERHGWEYVVRK  129 (137)
Q Consensus       106 L~F~SkE~AIayaek~Gw~Y~V~~  129 (137)
                      +.|.||+|=++||++||++|....
T Consensus       163 ~~~~sk~ei~~ya~~~gi~~~~~~  186 (188)
T d1k92a1         163 DELGGRHEMSEFMIACGFDYKMSV  186 (188)
T ss_dssp             HHSSSHHHHHHHHHHTTCCCCCCC
T ss_pred             cccCCHHHHHHHHHHcCCCCCCCC
Confidence            446799999999999999997643