Citrus Sinensis ID: 032598
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 137 | 2.2.26 [Sep-21-2011] | |||||||
| Q96BM9 | 186 | ADP-ribosylation factor-l | yes | no | 0.992 | 0.731 | 0.691 | 7e-55 | |
| Q5ZKQ8 | 186 | ADP-ribosylation factor-l | yes | no | 0.992 | 0.731 | 0.691 | 7e-55 | |
| Q9VHV5 | 186 | ADP-ribosylation factor-l | yes | no | 1.0 | 0.736 | 0.700 | 9e-55 | |
| Q6NZW8 | 186 | ADP-ribosylation factor-l | yes | no | 0.992 | 0.731 | 0.691 | 1e-54 | |
| Q66HA6 | 186 | ADP-ribosylation factor-l | yes | no | 0.992 | 0.731 | 0.683 | 1e-54 | |
| Q9CQW2 | 186 | ADP-ribosylation factor-l | yes | no | 0.992 | 0.731 | 0.683 | 1e-54 | |
| Q9NVJ2 | 186 | ADP-ribosylation factor-l | no | no | 0.992 | 0.731 | 0.683 | 1e-54 | |
| Q6P8C8 | 186 | ADP-ribosylation factor-l | yes | no | 0.992 | 0.731 | 0.691 | 2e-54 | |
| Q8VEH3 | 186 | ADP-ribosylation factor-l | no | no | 0.992 | 0.731 | 0.683 | 5e-54 | |
| Q2KI07 | 186 | ADP-ribosylation factor-l | yes | no | 0.992 | 0.731 | 0.676 | 5e-54 |
| >sp|Q96BM9|ARL8A_HUMAN ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 212 bits (539), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 49 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Homo sapiens (taxid: 9606) |
| >sp|Q5ZKQ8|ARL8A_CHICK ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 49 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Gallus gallus (taxid: 9031) |
| >sp|Q9VHV5|ARL8_DROME ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 96/137 (70%), Positives = 112/137 (81%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+T+GNVTIK+WD+GGQPRFRSMWERYCR V+AIVY+VDAAD D L SR
Sbjct: 49 MIPTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASR 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH LL KP L GIP+LVLGNK D P AL + L+E+M L SI DRE+CCY ISCK
Sbjct: 109 NELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSKS 137
NID + WL++HSKS+S
Sbjct: 169 NIDITLQWLIQHSKSQS 185
|
May play a role in lysosome motility (PubMed:16537643). Essential role in chromosome segregation (PubMed:15331635). Drosophila melanogaster (taxid: 7227) |
| >sp|Q6NZW8|AR8BA_DANRE ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 113/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY+VDAAD + + SR
Sbjct: 49 MIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASR 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Danio rerio (taxid: 7955) |
| >sp|Q66HA6|ARL8B_RAT ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 113/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR
Sbjct: 49 MIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASR 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Rattus norvegicus (taxid: 10116) |
| >sp|Q9CQW2|ARL8B_MOUSE ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 113/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR
Sbjct: 49 MIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASR 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q9NVJ2|ARL8B_HUMAN ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 113/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAAD + + SR
Sbjct: 49 MIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASR 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosome motility (PubMed:16537643). May play a role in chromosome segregation (PubMed:15331635). Homo sapiens (taxid: 9606) |
| >sp|Q6P8C8|ARL8A_XENTR ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 113/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD D + S+
Sbjct: 49 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASK 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL K L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKAQLQGIPVLVLGNKRDIPGALDEKELIERMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Xenopus tropicalis (taxid: 8364) |
| >sp|Q8VEH3|ARL8A_MOUSE ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 113/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 49 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLAGALDEKELIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Mus musculus (taxid: 10090) |
| >sp|Q2KI07|ARL8B_BOVIN ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 113/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIK+WD+GGQPRF+SMWERYCR V+AIVY++DAAD + + SR
Sbjct: 49 MIPTVGFNMRKVTKGNVTIKIWDIGGQPRFQSMWERYCRGVNAIVYMIDAADREKIEASR 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL ++ L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 137 | ||||||
| 224056258 | 184 | predicted protein [Populus trichocarpa] | 1.0 | 0.744 | 0.956 | 6e-72 | |
| 224103767 | 184 | predicted protein [Populus trichocarpa] | 1.0 | 0.744 | 0.948 | 2e-71 | |
| 255583323 | 184 | ADP-ribosylation factor, putative [Ricin | 1.0 | 0.744 | 0.934 | 3e-70 | |
| 449438319 | 184 | PREDICTED: ADP-ribosylation factor-like | 1.0 | 0.744 | 0.934 | 1e-69 | |
| 371501274 | 184 | ADP-ribosylation factor-like 8c [Nicotia | 1.0 | 0.744 | 0.905 | 7e-69 | |
| 371501270 | 184 | ADP-ribosylation factor-like 8a [Nicotia | 1.0 | 0.744 | 0.905 | 4e-68 | |
| 147858134 | 184 | hypothetical protein VITISV_035770 [Viti | 1.0 | 0.744 | 0.905 | 1e-67 | |
| 388491766 | 184 | unknown [Lotus japonicus] | 1.0 | 0.744 | 0.912 | 2e-67 | |
| 371501272 | 184 | ADP-ribosylation factor-like 8b [Nicotia | 1.0 | 0.744 | 0.912 | 2e-67 | |
| 359807425 | 184 | uncharacterized protein LOC100776101 [Gl | 1.0 | 0.744 | 0.905 | 3e-67 |
| >gi|224056258|ref|XP_002298779.1| predicted protein [Populus trichocarpa] gi|222846037|gb|EEE83584.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 275 bits (702), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 131/137 (95%), Positives = 134/137 (97%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD+DNL VSR
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADFDNLSVSR 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSKPSL+GIPLLVLGNKIDKP ALSKED MEQMGLKSITDREVCCYMISCKNST
Sbjct: 108 SELHDLLSKPSLSGIPLLVLGNKIDKPGALSKEDFMEQMGLKSITDREVCCYMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NIDTVIDWLVKHSKSK+
Sbjct: 168 NIDTVIDWLVKHSKSKT 184
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103767|ref|XP_002313185.1| predicted protein [Populus trichocarpa] gi|118481399|gb|ABK92642.1| unknown [Populus trichocarpa] gi|222849593|gb|EEE87140.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/137 (94%), Positives = 134/137 (97%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL VS+
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLSVSK 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSKPSL+GIPLLVLGNKIDKP +LSKED MEQMGLKSITDREVCCYMISCKNST
Sbjct: 108 SELHDLLSKPSLSGIPLLVLGNKIDKPGSLSKEDFMEQMGLKSITDREVCCYMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NIDTVIDWLVKHSKSK+
Sbjct: 168 NIDTVIDWLVKHSKSKN 184
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583323|ref|XP_002532424.1| ADP-ribosylation factor, putative [Ricinus communis] gi|223527873|gb|EEF29965.1| ADP-ribosylation factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 132/137 (96%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD+DNL VS+
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADFDNLSVSK 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSKPSLNGIPLLVLGNKIDKP ALSKE EQMGLKSITDREVCC+MISCKNST
Sbjct: 108 SELHDLLSKPSLNGIPLLVLGNKIDKPGALSKEAFTEQMGLKSITDREVCCFMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NIDTVIDWLVKHSKSK+
Sbjct: 168 NIDTVIDWLVKHSKSKN 184
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438319|ref|XP_004136936.1| PREDICTED: ADP-ribosylation factor-like protein 8A-like [Cucumis sativus] gi|449525451|ref|XP_004169731.1| PREDICTED: ADP-ribosylation factor-like protein 8A-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 128/137 (93%), Positives = 132/137 (96%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNM+KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY+NL VSR
Sbjct: 48 MIPTVGFNMKKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYENLSVSR 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSKPSLNGIPLLVLGNKIDK ALSK DL E+MGLKSITDREVCCYMISCKNST
Sbjct: 108 SELHDLLSKPSLNGIPLLVLGNKIDKQGALSKSDLTERMGLKSITDREVCCYMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NIDTVIDWLVKHSKSK+
Sbjct: 168 NIDTVIDWLVKHSKSKN 184
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501274|dbj|BAL44264.1| ADP-ribosylation factor-like 8c [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 264 bits (675), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 124/137 (90%), Positives = 133/137 (97%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD+DN+ +SR
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADHDNVSISR 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SE+HDLLSKPSLNGIPLLVLGNKIDKPEALSK+ L +QM LKS+TDREVCCYMISCKNST
Sbjct: 108 SEIHDLLSKPSLNGIPLLVLGNKIDKPEALSKQALTDQMDLKSVTDREVCCYMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NID+V+DWLVKHSKSKS
Sbjct: 168 NIDSVLDWLVKHSKSKS 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501270|dbj|BAL44262.1| ADP-ribosylation factor-like 8a [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 124/137 (90%), Positives = 133/137 (97%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD+DNL +S+
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADHDNLSISK 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLL+KPSL+GIPLLVLGNKIDKP ALSK+ L ++MGLKSITDREVCCYMISCKNST
Sbjct: 108 SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCYMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NID+VIDWLVKHSKSKS
Sbjct: 168 NIDSVIDWLVKHSKSKS 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858134|emb|CAN83936.1| hypothetical protein VITISV_035770 [Vitis vinifera] gi|296086990|emb|CBI33252.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/137 (90%), Positives = 131/137 (95%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR+MWERYCRAVSAIVYVVDAAD DN+ +S+
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRTMWERYCRAVSAIVYVVDAADPDNIGISK 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSKPSLNGIPLLVLGNKIDKP ALSK L E+MGLKSITDREVCC+MISCKNST
Sbjct: 108 SELHDLLSKPSLNGIPLLVLGNKIDKPGALSKHALTEEMGLKSITDREVCCFMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NID+VIDWLVKHSKSKS
Sbjct: 168 NIDSVIDWLVKHSKSKS 184
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388491766|gb|AFK33949.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/137 (91%), Positives = 131/137 (95%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DNL +SR
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISR 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSKPSL+GIPLLVLGNKIDKP ALSK+ L +QM LKSITDREVCC+MISCKNST
Sbjct: 108 SELHDLLSKPSLSGIPLLVLGNKIDKPGALSKQALTDQMDLKSITDREVCCFMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NID+VIDWLVKHSKSKS
Sbjct: 168 NIDSVIDWLVKHSKSKS 184
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371501272|dbj|BAL44263.1| ADP-ribosylation factor-like 8b [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/137 (91%), Positives = 130/137 (94%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DNL +S
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISS 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSKPSL+GIPLLVLGNKIDKP A SK+ L +QMGLKSITDREVCCYMISCKNST
Sbjct: 108 SELHDLLSKPSLSGIPLLVLGNKIDKPGAQSKQALTDQMGLKSITDREVCCYMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NID+VIDWLVKHSKSKS
Sbjct: 168 NIDSVIDWLVKHSKSKS 184
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807425|ref|NP_001241133.1| uncharacterized protein LOC100776101 [Glycine max] gi|255640961|gb|ACU20760.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 124/137 (90%), Positives = 131/137 (95%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DN+ +SR
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNISISR 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSKPSL+GIPLLVLGNKIDK EALSK+ L +QM LKSITDREVCC+MISCKNST
Sbjct: 108 SELHDLLSKPSLSGIPLLVLGNKIDKAEALSKQALTDQMDLKSITDREVCCFMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NID+VIDWLVKHSKSKS
Sbjct: 168 NIDSVIDWLVKHSKSKS 184
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 137 | ||||||
| TAIR|locus:2097355 | 184 | ARLA1C "ADP-ribosylation facto | 1.0 | 0.744 | 0.897 | 8.8e-63 | |
| TAIR|locus:2158591 | 184 | ARLA1D "ADP-ribosylation facto | 1.0 | 0.744 | 0.883 | 4.8e-62 | |
| TAIR|locus:2151734 | 184 | ARLA1A "ADP-ribosylation facto | 0.985 | 0.733 | 0.807 | 7.3e-59 | |
| TAIR|locus:2097340 | 176 | ARLA1B "ADP-ribosylation facto | 1.0 | 0.778 | 0.795 | 1.1e-53 | |
| UNIPROTKB|F1NJ19 | 145 | ARL8A "ADP-ribosylation factor | 0.992 | 0.937 | 0.691 | 5.1e-51 | |
| UNIPROTKB|F1NSI8 | 166 | ARL8A "ADP-ribosylation factor | 0.992 | 0.819 | 0.691 | 5.1e-51 | |
| UNIPROTKB|Q5ZKQ8 | 186 | ARL8A "ADP-ribosylation factor | 0.992 | 0.731 | 0.691 | 5.1e-51 | |
| UNIPROTKB|G3X6L5 | 179 | G3X6L5 "Uncharacterized protei | 0.992 | 0.759 | 0.691 | 5.1e-51 | |
| UNIPROTKB|Q96BM9 | 186 | ARL8A "ADP-ribosylation factor | 0.992 | 0.731 | 0.691 | 5.1e-51 | |
| FB|FBgn0037551 | 186 | Gie "GTPase indispensable for | 1.0 | 0.736 | 0.700 | 8.3e-51 |
| TAIR|locus:2097355 ARLA1C "ADP-ribosylation factor-like A1C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 123/137 (89%), Positives = 129/137 (94%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD DNL VS+
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSK 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSK SLNGIPLLVLGNKIDKP ALSKE L ++MGL S+TDREVCC+MISCKNST
Sbjct: 108 SELHDLLSKTSLNGIPLLVLGNKIDKPGALSKEALTDEMGLTSLTDREVCCFMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NID VIDWLVKHSKSK+
Sbjct: 168 NIDQVIDWLVKHSKSKN 184
|
|
| TAIR|locus:2158591 ARLA1D "ADP-ribosylation factor-like A1D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 121/137 (88%), Positives = 129/137 (94%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKG+VTIKLWDLGGQPRFRSMWERYCR+VSAIVYVVDAAD DNL VS+
Sbjct: 48 MIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSK 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLSK SLNGIPLLVLGNKIDKP ALSKE L ++MGLKS+TDREVCC+MISCKNST
Sbjct: 108 SELHDLLSKTSLNGIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNST 167
Query: 121 NIDTVIDWLVKHSKSKS 137
NID VIDWLVKHSKS +
Sbjct: 168 NIDQVIDWLVKHSKSSN 184
|
|
| TAIR|locus:2151734 ARLA1A "ADP-ribosylation factor-like A1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 109/135 (80%), Positives = 128/135 (94%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTKGNVTIK+WDLGGQ RFR+MWERYCR VSAIVYV+DAAD D++P+SR
Sbjct: 48 MIPTVGFNMRKVTKGNVTIKIWDLGGQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISR 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SEL+DLL+KPSLNGIPLL+LGNKIDK EALSK+ L++Q+GL+S+TDREVCCYMISCK+S
Sbjct: 108 SELNDLLTKPSLNGIPLLILGNKIDKSEALSKQALVDQLGLESVTDREVCCYMISCKDSI 167
Query: 121 NIDTVIDWLVKHSKS 135
NID VIDWL+KHS++
Sbjct: 168 NIDAVIDWLIKHSRT 182
|
|
| TAIR|locus:2097340 ARLA1B "ADP-ribosylation factor-like A1B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 109/137 (79%), Positives = 115/137 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRKVTK NV I+LWDLGGQPRFR MWERYCRAVS IVYVVDAAD +NL VSR
Sbjct: 40 MIPTVGFNMRKVTKENVAIRLWDLGGQPRFRCMWERYCRAVSMIVYVVDAADTENLSVSR 99
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SELHDLLS SL GIPLLVLGNKID ALSKE L E+MGL S+T REVCC MISCKN T
Sbjct: 100 SELHDLLSNASLIGIPLLVLGNKIDIHGALSKEALTEEMGLSSVTSREVCCLMISCKNPT 159
Query: 121 NIDTVIDWLVKHSKSKS 137
ID + DWLV HSKSK+
Sbjct: 160 TIDQLTDWLVNHSKSKN 176
|
|
| UNIPROTKB|F1NJ19 ARL8A "ADP-ribosylation factor-like protein 8A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 8 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 67
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 68 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 127
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 128 NIDITLQWLIQHSKSR 143
|
|
| UNIPROTKB|F1NSI8 ARL8A "ADP-ribosylation factor-like protein 8A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 29 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 88
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 89 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 148
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 149 NIDITLQWLIQHSKSR 164
|
|
| UNIPROTKB|Q5ZKQ8 ARL8A "ADP-ribosylation factor-like protein 8A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 49 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
|
| UNIPROTKB|G3X6L5 G3X6L5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 42 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 101
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 102 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 161
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 162 NIDITLQWLIQHSKSR 177
|
|
| UNIPROTKB|Q96BM9 ARL8A "ADP-ribosylation factor-like protein 8A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 49 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 109 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 169 NIDITLQWLIQHSKSR 184
|
|
| FB|FBgn0037551 Gie "GTPase indispensable for equal segregation of chromosomes" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 96/137 (70%), Positives = 112/137 (81%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+T+GNVTIK+WD+GGQPRFRSMWERYCR V+AIVY+VDAAD D L SR
Sbjct: 49 MIPTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASR 108
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH LL KP L GIP+LVLGNK D P AL + L+E+M L SI DRE+CCY ISCK
Sbjct: 109 NELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLSSIQDREICCYSISCKEKD 168
Query: 121 NIDTVIDWLVKHSKSKS 137
NID + WL++HSKS+S
Sbjct: 169 NIDITLQWLIQHSKSQS 185
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VHV5 | ARL8_DROME | No assigned EC number | 0.7007 | 1.0 | 0.7365 | yes | no |
| Q5R6E7 | ARL8B_PONAB | No assigned EC number | 0.6764 | 0.9927 | 0.7311 | yes | no |
| Q6NZW8 | AR8BA_DANRE | No assigned EC number | 0.6911 | 0.9927 | 0.7311 | yes | no |
| Q9CQW2 | ARL8B_MOUSE | No assigned EC number | 0.6838 | 0.9927 | 0.7311 | yes | no |
| Q54R04 | ARL8_DICDI | No assigned EC number | 0.6194 | 0.9781 | 0.7243 | yes | no |
| Q5ZKQ8 | ARL8A_CHICK | No assigned EC number | 0.6911 | 0.9927 | 0.7311 | yes | no |
| Q66HA6 | ARL8B_RAT | No assigned EC number | 0.6838 | 0.9927 | 0.7311 | yes | no |
| Q96BM9 | ARL8A_HUMAN | No assigned EC number | 0.6911 | 0.9927 | 0.7311 | yes | no |
| Q2KI07 | ARL8B_BOVIN | No assigned EC number | 0.6764 | 0.9927 | 0.7311 | yes | no |
| Q6P8C8 | ARL8A_XENTR | No assigned EC number | 0.6911 | 0.9927 | 0.7311 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_LG_I4117 | hypothetical protein (185 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 137 | |||
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 1e-91 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 3e-50 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 5e-40 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 2e-35 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 6e-34 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 3e-31 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-30 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 7e-29 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 3e-28 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 9e-28 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 1e-27 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 1e-27 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 2e-27 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 3e-27 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 7e-26 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 1e-25 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-25 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-23 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-22 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 8e-22 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 2e-20 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-14 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 7e-14 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 3e-13 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 9e-13 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 2e-12 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 2e-11 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 1e-10 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 5e-10 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 5e-10 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 1e-09 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 7e-09 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 1e-08 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 2e-08 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 2e-08 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 6e-08 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 2e-07 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 5e-07 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 1e-06 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 1e-06 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 1e-06 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 2e-06 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 2e-06 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 3e-06 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 6e-06 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 7e-06 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 1e-05 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 1e-05 | |
| cd04163 | 168 | cd04163, Era, E | 1e-05 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 1e-05 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 3e-05 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 3e-05 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 4e-05 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 4e-05 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 5e-05 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 5e-05 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 7e-05 | |
| cd00880 | 161 | cd00880, Era_like, E | 2e-04 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 2e-04 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 3e-04 | |
| TIGR00487 | 587 | TIGR00487, IF-2, translation initiation factor IF- | 4e-04 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 5e-04 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 8e-04 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 8e-04 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 0.001 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 0.001 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 0.001 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 0.001 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 0.002 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 0.002 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 0.002 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 0.003 | |
| COG0532 | 509 | COG0532, InfB, Translation initiation factor 2 (IF | 0.003 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 0.004 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 1e-91
Identities = 103/132 (78%), Positives = 114/132 (86%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
IPTVGFNMRKVTKGNVTIK+WDLGGQPRFRSMWERYCR V+AIVYVVDAAD + L V++
Sbjct: 28 TIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAK 87
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELHDLL KPSL GIPLLVLGNK D P ALS ++L+EQM LKSITDREV CY IS K T
Sbjct: 88 NELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISAKEKT 147
Query: 121 NIDTVIDWLVKH 132
NID V+DWL+KH
Sbjct: 148 NIDIVLDWLIKH 159
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 3e-50
Identities = 50/132 (37%), Positives = 80/132 (60%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
IPT+GFN+ V NV +WD+GGQ + R +W+ Y +++VVD++D + + ++
Sbjct: 27 TIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAK 86
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH LL++ L G PLL+L NK D P AL++ +L+E +GL+SI R S
Sbjct: 87 NELHKLLNEEELKGAPLLILANKQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGD 146
Query: 121 NIDTVIDWLVKH 132
+D +DWL++
Sbjct: 147 GLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-40
Identities = 51/131 (38%), Positives = 74/131 (56%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
IPT+GFN+ VT NV +WD+GGQ R +W Y A+++VVD+AD D + ++
Sbjct: 42 TIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAK 101
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
ELH LL++ L PLL+L NK D P A+S+ ++ E +GL + DR S
Sbjct: 102 EELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGE 161
Query: 121 NIDTVIDWLVK 131
+D +DWL
Sbjct: 162 GLDEGLDWLSN 172
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-35
Identities = 45/108 (41%), Positives = 66/108 (61%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+PT+ ++T GNV +DLGG + R +W+ Y V IV++VDAAD + S+
Sbjct: 47 HVPTLHPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESK 106
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE 108
EL LL+ L +P+L+LGNKIDKP A+S+E+L E +GL T +
Sbjct: 107 EELDSLLNDEELANVPILILGNKIDKPGAVSEEELREALGLYGTTTGK 154
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-34
Identities = 55/129 (42%), Positives = 75/129 (58%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ VT N+ ++WDLGGQ R W Y AI+YVVD+ D D L +S+S
Sbjct: 28 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKS 87
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +L + L LLV NK D P ALS+ ++ E++GL + DR + S
Sbjct: 88 ELHAMLEEEELKDAVLLVFANKQDMPGALSEAEVAEKLGLSELKDRTWQIFKTSATKGEG 147
Query: 122 IDTVIDWLV 130
+D +DWLV
Sbjct: 148 LDEGMDWLV 156
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-31
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PTVG N+ + G + WDLGGQ RS+W++Y ++YV+D+ D + S+S
Sbjct: 37 PTVGLNIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSA 96
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLME--QMGLKSITDREVCCYMISCKNST 120
+++ +L G+PLLVL NK D P+ALS ++ E + I R+ +S
Sbjct: 97 FEKVINNEALEGVPLLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGE 156
Query: 121 NIDTVIDWLVK 131
++ I+WLV
Sbjct: 157 GVEEGIEWLVD 167
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-30
Identities = 42/129 (32%), Positives = 64/129 (49%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT GFN++ V + +WD+GGQ + R W Y ++YV+D+AD + E
Sbjct: 45 PTQGFNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQE 104
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L +LL + L G+P+LV NK D A E++ E + L I DR S K +
Sbjct: 105 LVELLEEEKLAGVPVLVFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGL 164
Query: 123 DTVIDWLVK 131
++W+ K
Sbjct: 165 QEGMNWVCK 173
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-29
Identities = 38/106 (35%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 2 IPTVGFNMRKV-TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
IPTVGFN+ + + ++++ +WD+GGQ + R++W+ Y +VYVVD++D L S+
Sbjct: 28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQ 87
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITD 106
EL +L + G+P+++L NK D P AL+ E++ + LK
Sbjct: 88 KELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCS 133
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-28
Identities = 43/131 (32%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
++PTVGFN+ KGN++ +D+ GQ ++R +WE Y + + I++V+D++D + V++
Sbjct: 29 IVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAK 88
Query: 61 SELHDLLSKPSL--NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 118
EL LL+ P + IP+L NK+D P+AL+ + + + L++I D+ + S
Sbjct: 89 DELELLLNHPDIKHRRIPILFYANKMDLPDALTAVKITQLLCLENIKDKPWHIFASSALT 148
Query: 119 STNIDTVIDWL 129
+D +DWL
Sbjct: 149 GEGLDEGVDWL 159
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 9e-28
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ VT N++ +WD+GGQ + R +W Y +++VVD+ D D + +R
Sbjct: 42 IPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEARE 101
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +L++ L +LV NK D P+A+ ++ E++GL SI DR + I +T+
Sbjct: 102 ELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRN---WYIQPTCATS 158
Query: 122 IDTV---IDWLVKHSKS 135
D + + WL + K+
Sbjct: 159 GDGLYEGLTWLSNNLKN 175
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 1e-27
Identities = 43/106 (40%), Positives = 64/106 (60%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GGQ + R +W Y +++VVD+AD D + +R
Sbjct: 38 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQ 97
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDR 107
ELH +++ + LLV NK D P+A+ ++ E++GL I DR
Sbjct: 98 ELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDR 143
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 1e-27
Identities = 41/131 (31%), Positives = 72/131 (54%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D + + +R
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A+S ++ +++GL S+ +R +
Sbjct: 89 ELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148
Query: 122 IDTVIDWLVKH 132
+ +DWL +
Sbjct: 149 LYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 2e-27
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+PT GFN + + ++L ++GG R W+RY +++VVD+AD + LP++R
Sbjct: 29 VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQ 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-DREV---CCYMISCK 117
ELH LL P +PL+VL NK D P A S +++ +++ L+ I R +
Sbjct: 89 ELHQLLQHPP--DLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDG 146
Query: 118 NSTNIDTVIDWLVKH 132
+ + ++ V D L +
Sbjct: 147 SPSRMEAVKDLLSQL 161
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 3e-27
Identities = 47/129 (36%), Positives = 68/129 (52%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+GFN++ + + +WD+GGQ RS W Y + A+++VVD++D L + E
Sbjct: 44 PTLGFNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRE 103
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
L LL + L G LL+ NK D P ALS E++ E + L SI + S N+
Sbjct: 104 LQKLLVEERLAGATLLIFANKQDLPGALSPEEIREVLELDSIKSHHWRIFGCSAVTGENL 163
Query: 123 DTVIDWLVK 131
IDWLV
Sbjct: 164 LDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 7e-26
Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N+ +WD+GGQ + R +W Y + + +++VVD+ D + + +R
Sbjct: 46 IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDARE 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST- 120
EL +LS+ L LLV NK D P A+S ++ E++GL S+ R Y+ C +T
Sbjct: 106 ELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRN--WYIQGCCATTA 163
Query: 121 -NIDTVIDWLVKHSKSKS 137
+ +DWL + K
Sbjct: 164 QGLYEGLDWLSANIKKSM 181
|
Length = 182 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-25
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
PT+G N+ ++ N+ +WD+GGQ RS W Y A++ V+D+ D + LP+++ E
Sbjct: 45 PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEE 104
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE----VCC 111
L+ +L+ L LLVL NK D A++ ++ E +GL SI D CC
Sbjct: 105 LYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 1e-25
Identities = 45/139 (32%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D D + +R
Sbjct: 46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +L++ L LLV NK D P A++ ++ +++GL S+ R + I +T+
Sbjct: 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATS 162
Query: 122 IDTV---IDWLVKHSKSKS 137
+ + +DWL + +K+
Sbjct: 163 GEGLYEGLDWLSNNIANKA 181
|
Length = 181 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-23
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 2 IPTVGFNMRK--VTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
+PT GFN K V+ GN VT WD+GGQ + R +W+ Y R IV+VVD+ D + +
Sbjct: 32 VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERM 91
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 101
+++ELH + G+P+LVL NK D P AL ++ + + L
Sbjct: 92 EEAKTELHKITKFSENQGVPVLVLANKQDLPNALPVSEVEKLLAL 136
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 2e-22
Identities = 41/105 (39%), Positives = 59/105 (56%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
PT ++ GN+ +DLGG + R +W+ Y V+ IVY+VDA D + S+
Sbjct: 45 HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESK 104
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT 105
EL LLS L +P L+LGNKID P A S+++L +GL + T
Sbjct: 105 RELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTT 149
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 8e-22
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PTVGF K+ + ++DLGG FR +W Y +V+VVD++D D + +
Sbjct: 27 VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVK 86
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVC-CYMISCKNS 119
L +LL P ++G P+LVL NK DK AL D++E + L+ + + C++ C
Sbjct: 87 EILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAI 146
Query: 120 TNIDTVID 127
+ ID
Sbjct: 147 EGLGKKID 154
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-20
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 11/137 (8%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N+ +WD+GG+ + R +W+ Y A+V+V+D++ D + + S
Sbjct: 28 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHS 87
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC----YMISC- 116
EL LL++ L LL+ NK D ALS E++ E + L ++CC Y+ C
Sbjct: 88 ELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSL-----HKLCCGRSWYIQGCD 142
Query: 117 -KNSTNIDTVIDWLVKH 132
++ + +DWL +
Sbjct: 143 ARSGMGLYEGLDWLSRQ 159
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-14
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 12/138 (8%)
Query: 1 MIPTVGFNMRKVT--KGNVTIKLWDLGGQPRFRSMWE-----RYCRAVSAIVYVVDAADY 53
T ++ KG V + L D G F + R I+ VVD+ D
Sbjct: 29 PGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDR 88
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM 113
++ ++ + L K GIP++++GNKID E E+L+ L I V +
Sbjct: 89 ESEEDAKLLILRRLRK---EGIPIILVGNKIDLLEEREVEELLRLEELAKILG--VPVFE 143
Query: 114 ISCKNSTNIDTVIDWLVK 131
+S K +D + + L++
Sbjct: 144 VSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 7e-14
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAI--VY-VVDAADYD 54
IPT+G F + + T+KL WD GQ RFR++ Y R VY + ++
Sbjct: 29 IPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFE 88
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKID--KPEALSKED---LMEQMGLKSITDREV 109
N+ E+ +P++++GNK D +S E+ L +++GL
Sbjct: 89 NVKKWLEEILRHAD----ENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLP------- 137
Query: 110 CCYM-ISCKNSTNIDTVIDWLVK 131
+M S K + N++ + L +
Sbjct: 138 --FMETSAKTNENVEEAFEELAR 158
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 3e-13
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYD 54
T+G F + + +KL WD GQ RFRS+ Y R +VY V + ++
Sbjct: 30 KSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFE 89
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 114
NL +EL + IP++++GNK D + + + + + + +
Sbjct: 90 NLDKWLNELKEYAP----PNIPIILVGNKSDLE---DERQVSTEEAQQFAKENGLLFFET 142
Query: 115 SCKNSTNIDTVIDWLVK 131
S K N+D + L +
Sbjct: 143 SAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 9e-13
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F + + +KL WD GQ RFRS+ Y R AV A+ VY + + ++
Sbjct: 30 KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFE 89
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCY 112
NL EL + + + ++++GNK D E +S+E+ + +
Sbjct: 90 NLENWLKELREY----ASPNVVIMLVGNKSDLEEQRQVSREE-----AEA-FAEEHGLPF 139
Query: 113 M-ISCKNSTNIDTVIDWLVKH 132
S K +TN++ + L +
Sbjct: 140 FETSAKTNTNVEEAFEELARE 160
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 2e-12
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 2 IPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
PT+G T + N+ ++LWD GQ +RS+ Y R + I+ V D+ ++
Sbjct: 35 PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSD 94
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKID-KPEALSKEDLMEQMGLKSITDRE 108
E + L + + + +P+L++GNKID E S E+++ Q+ + +
Sbjct: 95 ELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVL 146
|
Length = 219 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-11
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 3 PTVGFN--MRKVTKGNVTIK--LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----- 53
P N + + T K L D GQ + ++ Y RAV + + V D
Sbjct: 33 PGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVE 92
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED---LMEQMGLKSITDREVC 110
+ L E+ G+P++++GNKID +A K L ++ + I
Sbjct: 93 EILEKQTKEIIHHAES----GVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPII----- 143
Query: 111 CYMISCKNSTNIDTVIDWLVK 131
+S + NID+ +
Sbjct: 144 --PLSAETGKNIDSAFKIVEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-10
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 3 PTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDN 55
T+G F ++ VT +KL WD GQ RFR++ Y R ++ V D +DN
Sbjct: 31 STIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDN 90
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKED 94
L +EL D S + + +LV GNKIDK +++E+
Sbjct: 91 LDTWLNEL-DTYSTNP-DAVKMLV-GNKIDKENREVTREE 127
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-10
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 26/131 (19%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL--------HDLL 67
V ++LWD+ GQ RF M Y + + V D V+R DL
Sbjct: 49 VVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFD--------VTRPSTFEAVLKWKADLD 100
Query: 68 SKPSLNG---IPLLVLGNKIDKPEALSKEDLM---EQMGLKSITDREVCCYMISCKNSTN 121
SK +L IP L+L NK D L KE L EQM + + + S K + N
Sbjct: 101 SKVTLPNGEPIPALLLANKCD----LKKERLAKDPEQMDQFCKENGFIGWFETSAKENIN 156
Query: 122 IDTVIDWLVKH 132
I+ + +LVK+
Sbjct: 157 IEEAMRFLVKN 167
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-10
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 4 TVGFNMRKVT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
TV + + + + L+ GQ RF+ MWE R + +VD++ P++
Sbjct: 54 TVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHA 109
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99
+ S N IP++V NK D +AL E + E +
Sbjct: 110 EEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREAL 146
|
Length = 187 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-09
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 5 VGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAA---DYDNLPVS 59
V F ++ V IKL WD GQ RFRS+ + Y R+ +A++ D + LP
Sbjct: 42 VDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 101
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKN 118
E+ + + +++GNKID E + ++ +Q + +D + Y+ S K
Sbjct: 102 LREIEQYANNKVIT----ILVGNKIDLAE---RREVSQQRA-EEFSDAQDMYYLETSAKE 153
Query: 119 STNID 123
S N++
Sbjct: 154 SDNVE 158
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-09
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 15/92 (16%)
Query: 4 TVGFNMRKVT----KGNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVD---AADYDN 55
T+G + R+ T + ++LWD GQ RFR SM + Y R V A+V+V D A + +
Sbjct: 34 TIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHS 93
Query: 56 LP--VSRSELHDLLSKPSLNGIPLLVLGNKID 85
LP + E H L ++ +P +++GNK D
Sbjct: 94 LPSWIEECEQHSLPNE-----VPRILVGNKCD 120
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-08
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRA--VSAIVYVVDAAD-YDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RFRS+ + R + + VD + + NL + E
Sbjct: 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 113
Query: 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISCKNSTNI 122
P ++LGNKID PE + + D Y S K++TN+
Sbjct: 114 SFPFVILGNKIDIPERQVSTEEAQAW----CRDNGDYPYFETSAKDATNV 159
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-08
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YD 54
I T+G F +R + IKL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 33 ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFE 92
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N+ + + S + +++GNK D E +SKE+ L + G+K +
Sbjct: 93 NIKNWMRNIDEHAS----EDVERMLVGNKCDMEEKRVVSKEEGEALAREYGIKFLE---- 144
Query: 110 CCYMISCKNSTNIDTVIDWLVKHSKSK 136
S K + N++ L K K
Sbjct: 145 ----TSAKANINVEEAFLTLAKDILKK 167
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-08
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R + T+KL WD GQ RFR++ Y R I+ V D D ++
Sbjct: 32 ISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN 91
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM-ISC 116
+ L ++ S N LLV GNK D L+ + +++ K D ++ S
Sbjct: 92 NVKQWLQEIDRYASENVNKLLV-GNKCD----LTDKKVVDYTEAKEFADELGIPFLETSA 146
Query: 117 KNSTNID 123
KN+TN++
Sbjct: 147 KNATNVE 153
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-08
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 19 IKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSL--NG 74
+ L D+ G + R E ++ AIV+VVD+A + N+ L+D+L+ N
Sbjct: 49 LTLVDVPGHEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNK 108
Query: 75 IPLLVLGNKID----KPEALSKEDL 95
IP+L+ NK D KP KE L
Sbjct: 109 IPILIACNKQDLFTAKPAKKIKELL 133
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-07
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD---AADYDNLPVSRSELHDLLSKPSLN 73
VT+++WD GQ RF+S+ + R V V D +++L R E S
Sbjct: 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPE 108
Query: 74 GIPLLVLGNKIDKPE--ALSKEDLMEQ-MGLKSITDREVCCYMISCKNSTNIDTV 125
P +VLGNKID E +S + + +I E S K + N+D
Sbjct: 109 NFPFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFET-----SAKEAINVDQA 158
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-07
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 12 VTKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVYVVDAADYDNLPVSRSELHDLLSKP 70
+ + + +WD GQ R+ ++ Y R A AI+ V D D D+ + + +L K
Sbjct: 44 IGGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL-VYDITDADSFQKVKKWIKEL--KQ 100
Query: 71 SL-NGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCYMISCKNSTNIDT 124
N I L+++GNKID +SK + + +G K + S K I+
Sbjct: 101 MRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKH--------FETSAKTGKGIEE 152
Query: 125 VIDWLVKH 132
+ L K
Sbjct: 153 LFLSLAKR 160
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-06
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 28/136 (20%)
Query: 3 PTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRSMWERYCR-AVSA-IVY-VVDAADYDN 55
T+G F R + TIK +WD GQ R+R++ Y R AV A +VY + + ++N
Sbjct: 34 STIGVEFATRTIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFEN 93
Query: 56 LPVSR--SELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDRE 108
V R EL D + + I ++++GNK D A+ E+ E+ GL I E
Sbjct: 94 --VERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFI---E 144
Query: 109 VCCYMISCKNSTNIDT 124
S + TN++
Sbjct: 145 T-----SALDGTNVEE 155
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-06
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 5 VGFNMRKVTKGNV--TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F M + V +++LWD GQ RF+ + Y R AI+ V D D +L +R
Sbjct: 35 VDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQW 94
Query: 63 LHDLLSKPSLNGIPLLVLGNKID--KPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
L D L + + + L ++G K D P + LMEQ +K + + + +S
Sbjct: 95 LEDALKENDPSSVLLFLVGTKKDLSSPAQYA---LMEQDAIKLAREMKAEYWAVSALTGE 151
Query: 121 NI 122
N+
Sbjct: 152 NV 153
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-06
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDA---ADYD 54
I TVG F + VT V +KL WD GQ RFRS+ Y R A++ + D + +D
Sbjct: 31 IATVGIQFTNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFD 90
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85
N+ +E+ + + +++LGNK D
Sbjct: 91 NIRAWLTEILEYAQSD----VVIMLLGNKAD 117
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-06
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 3 PTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAIVYVVDAADYDNLP 57
T+G F + V + T+K WD GQ R+RS+ Y R A +AIV V D ++
Sbjct: 32 STIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV-VYDITSEESFE 90
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKID 85
++S + +L N + L GNK D
Sbjct: 91 KAKSWVKELQEHGPPNIVIALA-GNKAD 117
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-06
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 4 TVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS 59
T+G F R V G ++KL WD GQ RFRS+ Y R + + V D ++
Sbjct: 32 TIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNAL 91
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKIDKPE 88
+ L D + S + + +LV GNK D +
Sbjct: 92 TNWLTDARTLASPDIVIILV-GNKKDLED 119
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 3e-06
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 100
V +++VVDA + +L K P++++ NKID KE+L+
Sbjct: 85 VDLVLFVVDADEKIG-----PGDEFILEKLKKVKTPVILVLNKIDL--VKDKEELLPL-- 135
Query: 101 LKSITDR----EVCCYMISCKNSTNIDTVIDWLVKH 132
L+ +++ E+ IS N+D ++D + K+
Sbjct: 136 LEELSELMDFAEI--VPISALKGDNVDELLDVIAKY 169
|
Length = 292 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 6e-06
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 1 MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAA---DY 53
+ PT+G F ++++T G +KL WD GQ RFR++ Y R I+ V D +
Sbjct: 42 LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETF 101
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP--EALSKEDLMEQMGLKSITDREVCC 111
NL + +L S + + + +LV GNK+D+ +S+E E M L +E C
Sbjct: 102 TNLSDVWGKEVELYST-NQDCVKMLV-GNKVDRESERDVSRE---EGMALA----KEHGC 152
Query: 112 YMISCKNST 120
+ C T
Sbjct: 153 LFLECSAKT 161
|
Length = 211 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 7e-06
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 73
+G V ++LWD GQ RFRS+ Y R +A + V D + + + + D+L++ +
Sbjct: 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD 85
Query: 74 GIPLLVLGNKID 85
I LV GNK D
Sbjct: 86 VIIALV-GNKTD 96
|
Length = 176 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-05
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 3 PTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDN 55
T+G F + + + T++L WD GQ RFRS+ Y R S V V D + +DN
Sbjct: 31 ATIGIDFLSKTMYVDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDN 90
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCYM 113
+ D + N + ++++GNK D + +S E+ ++ + E
Sbjct: 91 T----DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIET---- 142
Query: 114 ISCKNSTNI 122
S K N+
Sbjct: 143 -SAKAGHNV 150
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-05
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 4 TVG--FNMRKVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
T+G F R++T NVT+++WD+GGQ M ++Y A+ V D +
Sbjct: 32 TIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNS----Q 87
Query: 59 SRSELHDLLS---KPSLNGI--PLLVL-GNKIDKPE 88
S L D LS K + P +VL GNK D
Sbjct: 88 SFENLEDWLSVVKKVNEESETKPKMVLVGNKTDLEH 123
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM- 99
V +++VVDA+++ +L + P++++ NKID KEDL+ +
Sbjct: 83 VDLVLFVVDASEWIG-----EGDEFILELLKKSKTPVILVLNKIDL--VKDKEDLLPLLE 135
Query: 100 -GLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132
+ E+ + IS N+D +++++V++
Sbjct: 136 KLKELHPFAEI--FPISALKGENVDELLEYIVEY 167
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-05
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS--KPSLNGIP 76
+ +WD GG+ + + + AI+ V D D ++L S L L + IP
Sbjct: 50 LNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLN-EVSRLIAWLPNLRKLGGKIP 108
Query: 77 LLVLGNKI 84
++++GNK+
Sbjct: 109 VILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-05
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YD 54
+PT+G + ++KV+ N +++ +DL G P + + + + ++ V D D ++
Sbjct: 30 LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFE 89
Query: 55 NLPVSRSELHD-LLSKPSLNGIPLLVLGNKIDKP 87
L E+ ++ I ++V NKID
Sbjct: 90 ALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 3e-05
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 5 VGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVD---AADYDNLPVS 59
V F M+ + +KL WD GQ RFR++ + Y R+ + + D + ++++P
Sbjct: 38 VDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVP-- 95
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNS 119
+ + + K + + LL++GNK D E +E L E+ + + S K S
Sbjct: 96 -HWIEE-VEKYGASNVVLLLIGNKCDLEE--QREVLFEEACTLAEHYGILAVLETSAKES 151
Query: 120 TNIDTV 125
+N++
Sbjct: 152 SNVEEA 157
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 4e-05
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKPSLN 73
+ +++WD GQ RF S+ Y R+ I+ V D +D+LP + ++ K +
Sbjct: 49 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASE 104
Query: 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLK---SITDREVCCYMISCKNSTNIDTVIDWLV 130
LL++GNK+D + ++ Q G K IT C S K++ N+D + LV
Sbjct: 105 DAELLLVGNKLD---CETDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEIFLKLV 159
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-05
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSR 60
+ T G K + +L+D+GGQ R W V+AI++VV ++YD L
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 61 SE--LHD-------LLSKPSLNGIPLLVLGNKID 85
S L + + + P P+++ NK D
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKD 246
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 5e-05
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 12 VTKGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA---ADYDNLPVSRSELHDLL 67
+G + + WD GQ RF++M Y A + V D Y NL EL +
Sbjct: 43 KFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-- 100
Query: 68 SKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNI 122
+P IP +V+ NKID +++ Q + Y +S + TN+
Sbjct: 101 YRPE---IPCIVVANKIDLDPSVT------QKKFNFAEKHNLPLYYVSAADGTNV 146
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 5e-05
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 5 VGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F R +T N IKL WD GQ FRS+ Y R + + V D + S
Sbjct: 41 VEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW 100
Query: 63 LHDLLSKPSLNGIPLLVLGNKID--KPEALSKED 94
L D + N + ++++GNK D A+S E+
Sbjct: 101 LEDARQHANAN-MTIMLIGNKCDLAHRRAVSTEE 133
|
Length = 210 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 23/102 (22%)
Query: 35 ERYCRAVSAIVYVVDAADYDNLPVS-----RSEL----HDLLSKPSLNGIPLLVLGNKID 85
ER R +++V+D + D+ PV R+EL L KP + +VL NKID
Sbjct: 77 ER-TRV---LLHVIDLSGEDD-PVEDYETIRNELEAYNPGLAEKPRI-----VVL-NKID 125
Query: 86 KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127
+A + + ++++ LK + ++V + IS +D ++
Sbjct: 126 LLDAEERFEKLKEL-LKELKGKKV--FPISALTGEGLDELLK 164
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 2e-04
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 12 VTKGNVTIKLWDLGG--------QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL 63
+ L D G + R + RA ++ VVD+ D PV
Sbjct: 41 ELLPLGPVVLIDTPGLDEEGGLGRERVEEARQVADRA-DLVLLVVDS---DLTPVEEEAK 96
Query: 64 HDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 123
LL + G P+L++ NKID +E+L+ + L+ + D V +S ID
Sbjct: 97 LGLLRE---RGKPVLLVLNKIDLVPESEEEELLRERKLELLPDLPVI--AVSALPGEGID 151
Query: 124 TVIDWLVKH 132
+ + +
Sbjct: 152 ELRKKIAEL 160
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 2e-04
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 4 TVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS 59
T+G F R +T IKL WD GQ FRS+ Y R + + V D +
Sbjct: 36 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 95
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED 94
S L D + N +L+ GNK D +S E+
Sbjct: 96 TSWLEDARQHSNSNMTIMLI-GNKCDLESRREVSYEE 131
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 3e-04
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G F +R V +KL WD GQ RFR++ Y R ++ V D + ++
Sbjct: 36 ITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFV 95
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88
+ L ++ + + + + +++GNK D PE
Sbjct: 96 NVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2 | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 4e-04
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75
I D G F SM R + V+ IV +V AAD +P + + +S +
Sbjct: 134 GKMITFLDTPGHEAFTSMRARGAK-VTDIVVLVVAADDGVMP----QTIEAISHAKAANV 188
Query: 76 PLLVLGNKIDKPEA--------LSKEDLM-EQMGLKSITDREVCCYMISCKNSTNIDTVI 126
P++V NKIDKPEA LS+ L+ E G +I +S ID ++
Sbjct: 189 PIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIF------VPVSALTGDGIDELL 242
Query: 127 D 127
D
Sbjct: 243 D 243
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 5e-04
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
+ TVG F ++ V + + IKL WD GQ R+R++ Y R + + D + ++
Sbjct: 31 VSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 90
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCY 112
+ + + N +LV GNK D + +S E L +Q+G + +
Sbjct: 91 AVQDWSTQIKTYSWDNAQVILV-GNKCDMEDERVVSAERGRQLADQLGFE--------FF 141
Query: 113 MISCKNSTNIDTVIDWLV 130
S K + N+ V + LV
Sbjct: 142 EASAKENINVKQVFERLV 159
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 8e-04
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 2 IPTVGFNM--RKVTKGNVTI--KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G N + ++ I +WDLGGQ F +M C+ AI++
Sbjct: 30 IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCKDAVAILF----------- 78
Query: 58 VSRSELHDLLSKPSLNGI 75
+ DL K +LN I
Sbjct: 79 -----MFDLTRKSTLNSI 91
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 8e-04
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 13 TKGNVTIKLWDLGGQ-----PRFRSMWERYCRAVSAIVYVVDAAD 52
GN T+ LWD GQ P E + V A++YV+D D
Sbjct: 44 FLGNXTLNLWDCPGQDVFFEPTKDK--EHIFQXVGALIYVIDVQD 86
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.001
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 5 VGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE 62
V F R + IKL WD GQ RFR++ Y R + + V D S
Sbjct: 37 VEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 96
Query: 63 LHDLLSKPSLNGIPLLVLGNKID 85
L D + + N + L+ GNK D
Sbjct: 97 LTDARNLTNPNTVIFLI-GNKAD 118
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.001
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG 74
G I +WD G+ +F + YCR +A++ D ++ +L L + +
Sbjct: 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDC 101
Query: 75 IPLLVLGNKID--KPEALSKEDLMEQMGLKSITDREV 109
+ V+GNK+D + AL+ ++ + R+V
Sbjct: 102 L-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV 137
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 43 AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE----ALSKEDLMEQ 98
AI+ VVDA + + ++ H LL+K G+P++V NKID+ + E++ +
Sbjct: 93 AIL-VVDAVEG---VMPQTREHLLLAK--TLGVPIIVFINKIDRVDDAELEEVVEEISRE 146
Query: 99 MGLKSITDREVC-CYMISCKNSTNIDTVIDWLVKH 132
+ K E S ID +++ L +
Sbjct: 147 LLEKYGFGGETVPVVPGSALTGEGIDELLEALDLY 181
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 43 AIVYVVDAADYDNLPVSRSEL---HDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99
+++VVDA+D P ++ ++L + + IP++++ NKID + E+ +
Sbjct: 123 LLLHVVDASD----PDREEQIETVEEVLKELGADDIPIILVLNKIDLLDDEELEERLRAG 178
Query: 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132
++ IS K +D + + + +
Sbjct: 179 RPDAV--------FISAKTGEGLDLLKEAIEEL 203
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 15 GNVTIKLWDLGGQPRF-----RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK 69
GN+T+ LWD GQ F E V ++YV D + + L ++
Sbjct: 46 GNLTLNLWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFD-VESREYEEDLATLVKIIEA 104
Query: 70 PSLN--GIPLLVLGNKIDK 86
+ VL +K+D
Sbjct: 105 LYQYSPNAKVFVLIHKMDL 123
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 36.1 bits (83), Expect = 0.002
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 2 IPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVY--VVDAADYD 54
+ T+G + + +G + +WD GQ +F + + Y + AI+ V Y
Sbjct: 25 VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYK 84
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT---DREVCC 111
N+P H L + N IP+++ GNK+D + ++ KSIT + +
Sbjct: 85 NVP----NWHRDLVRVCEN-IPIVLCGNKVDVKD--------RKVKAKSITFHRKKNLQY 131
Query: 112 YMISCKNSTNIDTVIDWLVK 131
Y IS K++ N + WL +
Sbjct: 132 YDISAKSNYNFEKPFLWLAR 151
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.002
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 44 IVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKID-----KPEALSKEDLME 97
+V+VVD D P S L +L+ P++++GNKID K+ + +
Sbjct: 37 VVHVVDIFD---FPGSLIPGLAELI-----GAKPVILVGNKIDLLPKDVKPNRLKQWVKK 88
Query: 98 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136
++ + + ++V +S K ++ +I+ + K +K +
Sbjct: 89 RLKIGGLKIKDVIL--VSAKKGWGVEELIEEIKKLAKYR 125
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLN 73
T+ + D GQ F +M ++Y R +VY + ++ + R ++ + K
Sbjct: 47 YTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKED-- 104
Query: 74 GIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCC-YM-ISCKNSTNIDTVIDWL 129
+P++++GNK D +S E+ E C ++ S K + NID + + L
Sbjct: 105 -VPIVLVGNKCDLENERQVSTEEGEALA-------EEWGCPFLETSAKTNINIDELFNTL 156
Query: 130 VK 131
V+
Sbjct: 157 VR 158
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.003
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 74 GIPLLVLGNKIDKPEA---LSKEDLMEQMGLKS-ITDREVCCYMISCKNSTNIDTVID 127
G+P++V NKIDKPEA K++L E GL +V +S K ID +++
Sbjct: 107 GVPIVVAINKIDKPEANPDKVKQELQEY-GLVPEEWGGDVIFVPVSAKTGEGIDELLE 163
|
Length = 509 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 35.7 bits (83), Expect = 0.004
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 44 IVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKID------KPEALSKEDLM 96
IVYVVD D++ S EL + G P+L++GNKID + KE +
Sbjct: 67 IVYVVDIFDFEG---SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKI-KEWMK 117
Query: 97 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136
++ + ++ ++S K ID ++D + K K
Sbjct: 118 KRAKELGLKPVDII--LVSAKKGNGIDELLDKIKKARNKK 155
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 137 | |||
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.97 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.97 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.97 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.97 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.97 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.96 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.96 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.96 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.96 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.96 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.96 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.96 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.96 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.95 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.95 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.95 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.95 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.95 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.95 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.95 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.95 | |
| PTZ00099 | 176 | rab6; Provisional | 99.95 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.94 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.94 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.94 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.94 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.94 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.94 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.94 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.94 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.94 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.94 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.94 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.93 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.93 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.93 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.93 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.93 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.93 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.93 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.93 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.93 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.93 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.93 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.93 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.93 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.93 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.93 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.92 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.92 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.92 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.92 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.92 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.92 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.92 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.92 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.92 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.92 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.92 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.92 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.92 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.92 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.92 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.91 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.91 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.91 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.91 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.91 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.91 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.91 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.91 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.91 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.91 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.91 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.91 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.91 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.91 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.91 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.9 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.9 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.9 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.9 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.9 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.9 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.9 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.9 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.9 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.9 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.9 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.9 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.9 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.89 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.89 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.89 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.89 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.89 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.89 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.89 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.89 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.89 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.88 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.88 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.88 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.88 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.88 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.88 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.88 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.87 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.87 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.87 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.87 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.87 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.87 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.87 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.87 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.87 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.87 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.86 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.86 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.86 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.85 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.85 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.85 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.84 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.84 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.84 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.84 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.84 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.82 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.82 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.82 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.82 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.81 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.8 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.8 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.78 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.76 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.76 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.76 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.75 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.75 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.75 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.75 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.74 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.74 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.74 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.74 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.73 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.72 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.72 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.72 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.72 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.72 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.71 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.71 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.71 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.7 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.7 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.7 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.7 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.7 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.69 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.69 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.69 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.68 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.68 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.68 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.67 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.66 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.66 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.66 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.66 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.65 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.65 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.65 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.65 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.65 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.64 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.64 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.64 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.64 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.63 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.63 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.62 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.62 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.62 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.61 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.6 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.6 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.6 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.6 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.59 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.59 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.59 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.58 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.58 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.57 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.57 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.57 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.56 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.56 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.55 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.54 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.54 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.54 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.53 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.53 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.53 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.52 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.52 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.5 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.5 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.49 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.49 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.49 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.48 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.48 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.47 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.46 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.45 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.44 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.44 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.44 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.43 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.43 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.42 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.41 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.41 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.41 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.4 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.4 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.4 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.4 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.39 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.38 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.38 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.38 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.37 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.37 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.36 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.36 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.36 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.36 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.34 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.34 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.34 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.34 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.33 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.32 | |
| PRK13768 | 253 | GTPase; Provisional | 99.32 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.31 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.3 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.3 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.3 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.28 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.27 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.25 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.25 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.25 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.25 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.24 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.18 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.15 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.14 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.13 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.12 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.12 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.09 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.08 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.05 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.05 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.03 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.02 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.02 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.02 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.02 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.0 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.0 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.0 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.99 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 98.99 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 98.99 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.94 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.93 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 98.93 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.92 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 98.92 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.91 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.9 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 98.88 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 98.82 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 98.8 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.8 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.79 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.74 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.74 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.73 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.72 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.7 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.7 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.68 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.67 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.65 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.62 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.58 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 98.57 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 98.5 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.46 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.44 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 98.44 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 98.42 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 98.42 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.41 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.4 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.36 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 98.34 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.32 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 98.3 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 98.23 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.13 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.05 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.96 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 97.95 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 97.94 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 97.92 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 97.89 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 97.86 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 97.85 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 97.82 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.78 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 97.75 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 97.66 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.66 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 97.64 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 97.47 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 97.42 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 97.4 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 97.4 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 97.39 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 97.34 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 97.33 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 97.32 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.3 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 97.24 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 97.18 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 97.04 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.02 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 97.0 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 96.99 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 96.97 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 96.91 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 96.84 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 96.64 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 96.56 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 96.28 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 96.21 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.04 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 95.87 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 95.81 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 95.78 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 95.49 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 95.13 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 94.99 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 94.92 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 94.73 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 94.59 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 94.18 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 94.18 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 94.14 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 93.83 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 93.82 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 93.79 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 93.76 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 93.76 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 93.63 | |
| COG4963 | 366 | CpaE Flp pilus assembly protein, ATPase CpaE [Intr | 93.5 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 93.26 | |
| PF14331 | 266 | ImcF-related_N: ImcF-related N-terminal domain | 93.14 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 92.36 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 92.19 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 91.96 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 91.4 | |
| COG1908 | 132 | FrhD Coenzyme F420-reducing hydrogenase, delta sub | 91.32 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 91.2 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 91.05 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 90.97 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 90.92 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 90.81 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 90.68 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 90.59 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 90.32 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 89.39 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 89.33 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 89.32 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 89.17 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 88.97 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 88.69 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 88.38 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 88.32 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 88.08 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 87.97 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 87.05 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 87.02 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 86.17 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 85.84 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 85.82 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 85.55 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 84.14 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 83.65 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 83.53 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 83.46 | |
| PF08438 | 109 | MMR_HSR1_C: GTPase of unknown function C-terminal; | 83.12 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 81.81 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 81.79 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 81.42 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 81.13 | |
| KOG0052 | 391 | consensus Translation elongation factor EF-1 alpha | 80.51 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 80.41 |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=164.02 Aligned_cols=128 Identities=25% Similarity=0.494 Sum_probs=108.4
Q ss_pred CCCcccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|+.|||..++ + ++++.+++++|||+||++|++...+|+++|+|+|+|||+++.+||+.+..|+.++.+... .+.|
T Consensus 38 ~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~ 116 (205)
T KOG0084|consen 38 YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVP 116 (205)
T ss_pred hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCC
Confidence 5789995554 3 557789999999999999999999999999999999999999999999999999988754 6689
Q ss_pred EEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
.++|+||+|+.+...+ .++...++.+ .++++||+++.||++.|..|+..++++
T Consensus 117 ~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~-------~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 117 KLLVGNKCDLTEKRVVSTEEAQEFADELGIP-------IFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred eEEEeeccccHhheecCHHHHHHHHHhcCCc-------ceeecccCCccCHHHHHHHHHHHHHHh
Confidence 9999999999877554 2334444432 299999999999999999999988753
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=162.48 Aligned_cols=136 Identities=32% Similarity=0.656 Sum_probs=117.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+++..++.+++.+++||+||+++++.+|..+++++|++|+|+|+++.+++.....++..+.......++|++++
T Consensus 45 ~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv 124 (181)
T PLN00223 45 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
T ss_pred ccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEE
Confidence 35999999888888999999999999999999999999999999999999999999888888777765544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.......++...++......+.+.++++||++|+|++++|+||++.+.++
T Consensus 125 ~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 125 ANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred EECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 99999987777777788777654445566788999999999999999999988754
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=158.95 Aligned_cols=137 Identities=32% Similarity=0.691 Sum_probs=129.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
++||+|+|+..+.++++++++||.+|++++++.|++|++..+++|||+|++|.+.+.+....+..++........|++++
T Consensus 45 tvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~ 124 (181)
T KOG0070|consen 45 TVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVF 124 (181)
T ss_pred CCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999998877788999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
+||.|+++..+..++.+.++......+.|++..|+|.+|+|+.+.++|+.+.+.+++
T Consensus 125 aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~~ 181 (181)
T KOG0070|consen 125 ANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKRR 181 (181)
T ss_pred echhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhccC
Confidence 999999999999999999998888889999999999999999999999999988653
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-29 Score=148.85 Aligned_cols=135 Identities=82% Similarity=1.314 Sum_probs=128.5
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
++||+|+|.+++..+.+.+.+||.|||.+++++|+.|+++++++++|+|+.+++..+..+..+..++......++|+++.
T Consensus 49 miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVL 128 (186)
T KOG0075|consen 49 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVL 128 (186)
T ss_pred hcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||.|+.+......+...++....+.+.+.++.+|++...|++...+|+.+.-..
T Consensus 129 GnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 129 GNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred cccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 9999999998889999999999999999999999999999999999999987654
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=157.32 Aligned_cols=134 Identities=34% Similarity=0.673 Sum_probs=115.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..+..+++.+.+|||||+++++..+..+++.++++++|+|++++.+++....++..+.+.....++|++++
T Consensus 41 ~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv 120 (175)
T smart00177 41 TIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120 (175)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEE
Confidence 46999988888888899999999999999999999999999999999999999899988888888766543467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+||+|+.+.....++...++......+.+.++++||++|+|++++|+||.+.+.
T Consensus 121 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 999999776666777777776555556777889999999999999999988754
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=155.33 Aligned_cols=131 Identities=31% Similarity=0.665 Sum_probs=110.7
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+++..+..+++++.+|||||++++...+..+++++|++++|+|+++..+++....++..+.......++|++++
T Consensus 28 ~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (159)
T cd04150 28 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVF 107 (159)
T ss_pred cCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEE
Confidence 46899998888888899999999999999999999999999999999999999889988888877765434457899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.....++...+.......+.+.++++||++|+|++++|+||.+
T Consensus 108 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 108 ANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999765555566666654444456777899999999999999999964
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-29 Score=147.77 Aligned_cols=135 Identities=32% Similarity=0.654 Sum_probs=127.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
++||+|+|++.+.++++.|++||.+|+.+.+++|++|+.+..++|||+|+.+.+.+++.+..++.+++.....+.|+++.
T Consensus 45 ~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lvl 124 (180)
T KOG0071|consen 45 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILIL 124 (180)
T ss_pred cccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998877788999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||.|++....++++.+.+.......+.|.+.++||.+|+|+.+.|.|++..++.
T Consensus 125 ANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 125 ANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhccC
Confidence 9999999999999999999988878889999999999999999999999987653
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=154.78 Aligned_cols=131 Identities=34% Similarity=0.674 Sum_probs=111.1
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..+..+++.+++|||||+++++.+++.+++.+|++++|+|++++.+++....++..+.......++|++++
T Consensus 37 ~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04149 37 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVF 116 (168)
T ss_pred ccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEE
Confidence 35899988888888899999999999999999999999999999999999999899988888877766533467899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.....++.+.++......+.++++++||++|+|++++|+||++
T Consensus 117 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 117 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 999999765566667776655444445677999999999999999999975
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=155.31 Aligned_cols=131 Identities=21% Similarity=0.316 Sum_probs=107.2
Q ss_pred CCCcccceeeE----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||||+.+.. +.+..+.+++|||+|||+|+++.+.|++.+.++|.|||+++..||+...+|++.........+.-
T Consensus 51 YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 51 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVI 130 (221)
T ss_pred ccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceE
Confidence 67999977654 44567999999999999999999999999999999999999999999999999998876555688
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++|+||.||.+.+......-..+. ..-+..|+++||+.|+||+++|..|...+-
T Consensus 131 I~LVGnKtDL~dkrqvs~eEg~~kA---kel~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQVSIEEGERKA---KELNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred EEEEcccccccchhhhhHHHHHHHH---HHhCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 8999999999887654322111111 111335999999999999999999887764
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=155.14 Aligned_cols=135 Identities=33% Similarity=0.642 Sum_probs=115.0
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..++.+++.+.+|||||+++++..+..+++.+|++|+|+|+++..+++....++..+.......++|++++
T Consensus 45 ~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv 124 (182)
T PTZ00133 45 TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVF 124 (182)
T ss_pred cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEE
Confidence 36899988888888999999999999999999999999999999999999998889888877777765433457899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||.|+.+.....++...++......+.+.++++||++|+|++++|++|.+.+.+
T Consensus 125 ~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 125 ANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 9999997666666777777765455556778899999999999999999987754
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=156.21 Aligned_cols=126 Identities=24% Similarity=0.432 Sum_probs=109.0
Q ss_pred CCCcccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
++.|+|+.++ . +++..+.+++|||+||++++.+...|+++|.++++|||+++..|++.+..|+..+.+... .+.|
T Consensus 41 ~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~ 119 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVV 119 (207)
T ss_pred ccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCc
Confidence 4678885554 3 456679999999999999999999999999999999999999999999999999987654 5899
Q ss_pred EEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|+||+|+...+.+ +.++..++. .|+|+||++|.||+++|-.|++.+.+
T Consensus 120 ~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~--------~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 120 KILVGNKCDLEEKRQVSKERGEALAREYGI--------KFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred EEEeeccccccccccccHHHHHHHHHHhCC--------eEEEccccCCCCHHHHHHHHHHHHHh
Confidence 9999999999886543 456666655 59999999999999999999999874
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=153.50 Aligned_cols=133 Identities=36% Similarity=0.789 Sum_probs=121.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|++...+..++..+.+||.+|+..+++.|+.+++.++++|||+|+++.+.+.+....+..++......++|++++
T Consensus 42 ~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl 121 (175)
T PF00025_consen 42 TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILIL 121 (175)
T ss_dssp EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEE
Confidence 36999999999999999999999999999999999999999999999999999889999999999888766678999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCC-CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.+.....++...+...... .+.+.++.|||.+|+|+.+.++||.+.+
T Consensus 122 ~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 122 ANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 9999999888888888888766554 6788899999999999999999999864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=153.21 Aligned_cols=125 Identities=22% Similarity=0.395 Sum_probs=104.4
Q ss_pred CCcccceeeE--E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||||-.+.+ + +...++|.+|||+|+++|.++.+.|+++|++.|+|||+++.+||.....|+.++..... +++-+
T Consensus 35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vi 113 (200)
T KOG0092|consen 35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVI 113 (200)
T ss_pred ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEE
Confidence 4899955543 3 34459999999999999999999999999999999999999999999999999987755 77888
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|||+|+.+.+.+ ....+.- +..|+++||++|.|++++|..|.+.+-.
T Consensus 114 alvGNK~DL~~~R~V~~~ea~~yAe~~--------gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 114 ALVGNKADLLERREVEFEEAQAYAESQ--------GLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred EEecchhhhhhcccccHHHHHHHHHhc--------CCEEEEEecccccCHHHHHHHHHHhccC
Confidence 889999999885443 2233332 3459999999999999999999988753
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=148.86 Aligned_cols=135 Identities=31% Similarity=0.586 Sum_probs=112.2
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..++.+++.+.+|||||++.++..+..+++.+|++++|+|++++.+++....|+..+.......++|++++
T Consensus 27 ~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv 106 (169)
T cd04158 27 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIF 106 (169)
T ss_pred cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEE
Confidence 46899988888888999999999999999999999999999999999999999999999999888876544466899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||+|+.......++...+..... ..+.+.++++||++|.|++++|+||++.+.+
T Consensus 107 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 107 ANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred EeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 999999765555555555443222 1234578899999999999999999987654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=146.07 Aligned_cols=131 Identities=32% Similarity=0.697 Sum_probs=107.9
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CCCCcEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LNGIPLL 78 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~p~i 78 (137)
+.||+|+....+..+++.+++|||||++++..++..+++.+|++++|+|+++..++.....|+..+.+... ..++|++
T Consensus 29 ~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 108 (162)
T cd04157 29 IVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL 108 (162)
T ss_pred ecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE
Confidence 46899988877888899999999999999999999999999999999999998888887778877765422 2579999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+++||+|+.+.....++...++........+.++++||++|+|++++|++|.+
T Consensus 109 iv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 109 FFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 99999999765555555555554332334567899999999999999999975
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=147.02 Aligned_cols=131 Identities=32% Similarity=0.573 Sum_probs=113.4
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|++...+..++..+++||+||++.++.++..+++.++++++|+|+++..+++....|+..+.+.....++|++++
T Consensus 27 ~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv 106 (167)
T cd04161 27 VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVL 106 (167)
T ss_pred ccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEE
Confidence 46999988888888999999999999999999999999999999999999999899999999998877655568999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCC---CCceeEEEeecccC------CChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSIT---DREVCCYMISCKNS------TNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~v~~~~~~i~~ 131 (137)
+||+|+....+..++.+.+...... ...+.+++|||++| .|+++.|+||++
T Consensus 107 ~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 107 ANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 9999998887777777777654332 23577888999998 899999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=147.66 Aligned_cols=131 Identities=34% Similarity=0.618 Sum_probs=110.9
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+....+..++..+.+|||||++.++..+..+++.+|++++|+|+++..++.....|+..+.......++|++++
T Consensus 42 ~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv 121 (173)
T cd04154 42 ISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLIL 121 (173)
T ss_pred cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 46899988888888899999999999999999999999999999999999999888888888888766444468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.....++...++........++++++||++|+|++++|++++.
T Consensus 122 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 122 ANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 999999776666666666654333445778999999999999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=144.66 Aligned_cols=130 Identities=42% Similarity=0.764 Sum_probs=106.4
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+++++..+++++..+++|||||++.++.++..+++.++++++|+|++++.++.....++..+.+.....++|+++++
T Consensus 28 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~ 107 (158)
T cd04151 28 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFA 107 (158)
T ss_pred CCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEE
Confidence 58999888888888999999999999999999999999999999999999877776666666655554334579999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
||+|+.+.....++...++.......+++++++||++|.|++++|++|++
T Consensus 108 nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 108 NKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred eCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 99999765555556565554333334567999999999999999999976
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-27 Score=151.97 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=101.4
Q ss_pred CCCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+ ..+..+ .+++++|||+|+++++.++..+++++|++++|||+++.++++.+..|+..+.+. ...++|
T Consensus 29 ~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~p 107 (202)
T cd04120 29 CKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAE 107 (202)
T ss_pred CCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCc
Confidence 357887444 345544 489999999999999999999999999999999999999999999998876544 236799
Q ss_pred EEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+...+... .....+... ..++.+++|||++|+|++++|+++++.+.+
T Consensus 108 iilVgNK~DL~~~~~v~~~~~~~~a~~---~~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 108 LLLVGNKLDCETDREISRQQGEKFAQQ---ITGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EEEEEECcccccccccCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999996543321 112222110 113569999999999999999999987753
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=141.32 Aligned_cols=136 Identities=32% Similarity=0.608 Sum_probs=122.7
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||.|++..++..+++++++||.+||...++.|+.|+.++||+|+|+|++++..+++....+..++...+..+.|++++
T Consensus 44 i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvl 123 (185)
T KOG0073|consen 44 ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVL 123 (185)
T ss_pred cCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999988777788999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||.|+........+...+..... ....|..+.|||.+|+++.+.+.|++..+.++
T Consensus 124 ank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 124 ANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred EecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 999999988777777766665444 45678899999999999999999999887653
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=145.24 Aligned_cols=131 Identities=31% Similarity=0.584 Sum_probs=110.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.++..+..+++++.+|||||++++...+..+++.+|++++|+|+++.+++.....++..+.+.....++|++++
T Consensus 43 ~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv 122 (174)
T cd04153 43 TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVL 122 (174)
T ss_pred cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEE
Confidence 36889988888888899999999999999999999999999999999999998888887777777766544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.....++...++.......++.++++||++|+|++++|++|+.
T Consensus 123 ~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 123 ANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 999999765556666677765444455678999999999999999999974
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=144.86 Aligned_cols=129 Identities=32% Similarity=0.628 Sum_probs=109.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|++...++.+++++.+|||||+++++.++..+++++|++++|+|+++..++.....|+..+.... .++|++++
T Consensus 28 ~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv 105 (164)
T cd04162 28 VVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVL 105 (164)
T ss_pred ccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEE
Confidence 4699998888888899999999999999999999999999999999999999888888888888776542 68999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeeccc------CCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKN------STNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~v~~~~~~i~~ 131 (137)
+||+|+.......++...++.... ...++.++++||++ ++||+++|+.+..
T Consensus 106 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 106 ANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 999999877777766666654433 34578889998888 9999999998864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=147.63 Aligned_cols=129 Identities=23% Similarity=0.383 Sum_probs=102.4
Q ss_pred CCCcccceeeE----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||+|..+.. ++.+.+++.+|||+|++++..++..++++||++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 9 ~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~p 87 (176)
T PTZ00099 9 YQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVI 87 (176)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCe
Confidence 57999966642 33456899999999999999999999999999999999999999999999999887653 25789
Q ss_pred EEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+..... ..+...... ..++.++++||++|+|++++|++|++.+-+
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999965332 222222111 123458999999999999999999988754
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=148.67 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=100.5
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++. .++.+.+.+++|||+|+++++.+++.+++++|++++|||++++.+++.+. .|...+... ..++|
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~p 109 (191)
T cd01875 32 YIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVP 109 (191)
T ss_pred CCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence 4689986654 24455689999999999999999999999999999999999999999986 577766543 25799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCC---------CCC-ceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSI---------TDR-EVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||.|+.+.....+.......... ... .+.++++||++|+|++++|.++++.+..
T Consensus 110 iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 110 ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999654321111111110000 011 2579999999999999999999987754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-26 Score=146.05 Aligned_cols=128 Identities=17% Similarity=0.292 Sum_probs=100.8
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+++|||+|++++..++..+++.+|++++|||++++.+++.+..|++.+.... +++|+
T Consensus 36 ~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~pi 113 (189)
T cd04121 36 GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPK 113 (189)
T ss_pred CCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 46666444 33443 44889999999999999999999999999999999999999999999999996643 57999
Q ss_pred EEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...+.+ .+....+. ...++.+++|||++|.||+++|+++++.+..
T Consensus 114 ilVGNK~DL~~~~~v~~~~~~~~a----~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 114 ILVGNRLHLAFKRQVATEQAQAYA----ERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred EEEEECccchhccCCCHHHHHHHH----HHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999764332 11112221 1124569999999999999999999987753
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=141.01 Aligned_cols=131 Identities=40% Similarity=0.753 Sum_probs=109.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+...+..++..+.+|||||++.+..++..+++.++++++|+|+++.+++.....++..+.+.....++|++++
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 113 (167)
T cd04160 34 ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLIL 113 (167)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 36888888888888899999999999999999999999999999999999998888888888888776554568999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCC--CCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.......++...+.... .....++++++||++|+|++++++||++
T Consensus 114 ~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 114 ANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 99999977655555555554321 2234578999999999999999999975
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=137.41 Aligned_cols=136 Identities=34% Similarity=0.637 Sum_probs=126.7
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.+||+|+|...+.+++.++++||.+|+-..++.|+.|+...+++|+|+|.+|.+........+..+++..+..+...+++
T Consensus 46 tkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~ 125 (182)
T KOG0072|consen 46 TKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVF 125 (182)
T ss_pred cCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEE
Confidence 47999999999999999999999999999999999999999999999999999888888888888988888888889999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||.|........+....++......+.+.++++||.+|+|++..++|+.+.++++
T Consensus 126 anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 126 ANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 99999998888889999999888888889999999999999999999999998865
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=146.36 Aligned_cols=129 Identities=20% Similarity=0.271 Sum_probs=99.9
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. +++..+++++|||+|+++++.++..++++++++++|||+++..+++.+ ..|+..+.+.. .++|
T Consensus 30 ~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~p 107 (176)
T cd04133 30 YIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVP 107 (176)
T ss_pred CCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCC
Confidence 57999855542 334568999999999999999999999999999999999999999998 67998886542 4799
Q ss_pred EEEEeeCCCCCCCCC----------H-HHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS----------K-EDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~----------~-~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+... + .+....+.. ..+. .+++|||++|+||+++|+.+++.+.+
T Consensus 108 iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~----~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 108 IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK----QIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH----HcCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 999999999965321 1 111111110 1122 48999999999999999999987653
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=146.96 Aligned_cols=128 Identities=20% Similarity=0.401 Sum_probs=102.5
Q ss_pred CCCcccceeeEE----EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~----~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++... +.+.+++.+|||+|+++++.++..++++++++++|||+++..+++.+..|+..+.+.. .++|
T Consensus 24 ~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~p 101 (200)
T smart00176 24 YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIP 101 (200)
T ss_pred CCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCC
Confidence 468998666533 2356899999999999999999999999999999999999999999999999887642 5799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.......+.. .+. ...++.+++|||++|+||+++|++|++.+.+
T Consensus 102 iilvgNK~Dl~~~~v~~~~~-~~~----~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 102 IVLCGNKVDVKDRKVKAKSI-TFH----RKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EEEEEECcccccccCCHHHH-HHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999985432211111 111 1235679999999999999999999987754
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=143.19 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=101.7
Q ss_pred CCCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+. .+ ++..+.+++|||||+++++.++..+++.+|++++|||+++..+++.+..|...+.......++|+
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pi 110 (172)
T cd04141 31 HDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPL 110 (172)
T ss_pred cCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3688886554 23 34458899999999999999999999999999999999999999999888766655433467999
Q ss_pred EEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+....... +....+. ...++++++|||++|.|++++|+++++.+.+
T Consensus 111 ilvgNK~Dl~~~~~v~~~~~~~~a----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 111 VLVGNKVDLESQRQVTTEEGRNLA----REFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred EEEEEChhhhhcCccCHHHHHHHH----HHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999986543321 1111221 1124579999999999999999999987764
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=141.27 Aligned_cols=131 Identities=34% Similarity=0.578 Sum_probs=112.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||.+.+...+..+++++.+||+||+..++..+..+++.++++++|+|+++++++.....++..+.+.....++|+++++
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~ 125 (184)
T smart00178 46 QPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILG 125 (184)
T ss_pred CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEE
Confidence 57888887888888999999999999999999999999999999999999988888888788877765444679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCC-------CCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSI-------TDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
||+|+....+..++...++.... ..+.+.+++|||++|+|++++++||.+.
T Consensus 126 NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 126 NKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 99999876677788888865432 2356789999999999999999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=145.18 Aligned_cols=126 Identities=19% Similarity=0.332 Sum_probs=103.4
Q ss_pred CcccceeeE----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~~~----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
+|||..+.+ ++++.++.++|||+||++|++....|+++|.|.++|||++...+|+.+.+|+.++..... ++++++
T Consensus 45 sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivim 123 (222)
T KOG0087|consen 45 STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIM 123 (222)
T ss_pred cceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEE
Confidence 688855543 667779999999999999999999999999999999999999999999999999987644 799999
Q ss_pred EEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+|+||+|+.+.+.+. +-...+.. .....++++||..+.|++++|..+...+
T Consensus 124 LvGNK~DL~~lraV~te~~k~~Ae----~~~l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 124 LVGNKSDLNHLRAVPTEDGKAFAE----KEGLFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EeecchhhhhccccchhhhHhHHH----hcCceEEEecccccccHHHHHHHHHHHH
Confidence 999999998754432 11122211 1234699999999999999998888765
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=141.40 Aligned_cols=123 Identities=22% Similarity=0.342 Sum_probs=105.1
Q ss_pred Cccccee----eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~----~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.|+|..+ .+++.+++++++|||+|++.+++....|++.|.|.++|||++..++|..+..|+..+.+.. .+++-++
T Consensus 37 ~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvIm 115 (216)
T KOG0098|consen 37 LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIM 115 (216)
T ss_pred ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEE
Confidence 4677444 3577888999999999999999999999999999999999999999999999999998764 4789999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+...+.+ ..++++.+. .++++||++++|+++.|...+..+-
T Consensus 116 LiGNKsDL~~rR~Vs~EEGeaFA~ehgL--------ifmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 116 LIGNKSDLEARREVSKEEGEAFAREHGL--------IFMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred EEcchhhhhccccccHHHHHHHHHHcCc--------eeehhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999877654 344555544 3889999999999999999887764
|
|
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=141.09 Aligned_cols=134 Identities=29% Similarity=0.564 Sum_probs=105.5
Q ss_pred CCcccceeeEEE-----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~~~-----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||+|++...+. .+++.+.+|||||++++...+..+++.+|++++|+|+++..+++....|+..+.......++|
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p 111 (183)
T cd04152 32 VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP 111 (183)
T ss_pred CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 488886665433 256899999999999999999999999999999999999888888877887777654446799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCC-CCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.....++...+...... ...++++++||++|+|+++++++|.+.+.+
T Consensus 112 ~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 112 VLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 99999999997654555554444322221 224668999999999999999999988854
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-26 Score=139.70 Aligned_cols=124 Identities=24% Similarity=0.368 Sum_probs=105.7
Q ss_pred cccceee----EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 4 TVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 4 t~~~~~~----~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
|||..++ .+++..+++.+|||+||++|+.+.+.|+++|.|+|+|||.+..++|..+..|+.++..+...+++-.++
T Consensus 43 tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikml 122 (209)
T KOG0080|consen 43 TIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKML 122 (209)
T ss_pred eeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhh
Confidence 4885554 366778999999999999999999999999999999999999999999999999998877778888899
Q ss_pred EeeCCCCCCCCCHH-----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 80 LGNKIDKPEALSKE-----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 80 v~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+||+|..+++.+. .+.+.++. -|+++||++.+|++.+|+.+++.+.+
T Consensus 123 VgNKiDkes~R~V~reEG~kfAr~h~~--------LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 123 VGNKIDKESERVVDREEGLKFARKHRC--------LFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred hcccccchhcccccHHHHHHHHHhhCc--------EEEEcchhhhccHHHHHHHHHHHHhc
Confidence 99999987655432 24444443 49999999999999999999998864
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=137.36 Aligned_cols=130 Identities=32% Similarity=0.622 Sum_probs=106.6
Q ss_pred CCcccceeeEEEe-CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 2 IPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 2 ~pt~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.||++++...+.. ++..+.+|||||++.+...+..+++.+|++++|+|++++.++.....++..+++.....++|++++
T Consensus 28 ~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 107 (160)
T cd04156 28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLL 107 (160)
T ss_pred cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEE
Confidence 5888887776654 468999999999999999999999999999999999998888888888888876544468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCC-CCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.......++...++..... ..+++++++||++|+|++++|++|.+
T Consensus 108 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 108 ANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999997655556666555433222 34677999999999999999999875
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=135.87 Aligned_cols=130 Identities=22% Similarity=0.270 Sum_probs=105.7
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.|+|+.+. .++ ++.+++++|||+||++|++..+.|+++|.|.++|||+++.++++.+..|+..+.... .+++-+
T Consensus 39 sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvv 117 (214)
T KOG0086|consen 39 SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVV 117 (214)
T ss_pred cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEE
Confidence 467775554 344 556999999999999999999999999999999999999999999999999886543 378889
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||.|+.+.+.+.-+...- ..+.+.+.++++||++|+|+++.|-..++.+..
T Consensus 118 iL~GnKkDL~~~R~VtflEAs~---FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 118 ILCGNKKDLDPEREVTFLEASR---FAQENELMFLETSALTGENVEEAFLKCARTILN 172 (214)
T ss_pred EEeCChhhcChhhhhhHHHHHh---hhcccceeeeeecccccccHHHHHHHHHHHHHH
Confidence 9999999998877654332221 122345579999999999999999998887753
|
|
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=136.24 Aligned_cols=131 Identities=38% Similarity=0.762 Sum_probs=113.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++++...+..++..+.+||+||++.+...+..+++.+|++++|+|+++++++.....++..+.......+.|++++
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd00878 27 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIF 106 (158)
T ss_pred CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 35888988888888899999999999999999999999999999999999999889888888888777554578999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.......++...++........++++++||++|.|++++|++|.+
T Consensus 107 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 107 ANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred eeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 999999877666677777665444456788999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=143.84 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=99.1
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .++.+.+.+.+|||+|++++..+++.+++++|++++|||++++.+++.+ ..|...+.... ++.|
T Consensus 34 ~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~p 111 (182)
T cd04172 34 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTK 111 (182)
T ss_pred cCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCC
Confidence 4689885553 2345568899999999999999999999999999999999999999997 78988886642 5799
Q ss_pred EEEEeeCCCCCCC--------------CCH---HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSK---EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~ 134 (137)
+++|+||+|+.+. ... .++.+.++. +.|++|||++|+| |+++|..+++.+.
T Consensus 112 iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-------~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 112 MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA-------ATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC-------CEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 9999999998642 111 122222221 2699999999998 9999999998654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=139.72 Aligned_cols=133 Identities=36% Similarity=0.625 Sum_probs=111.0
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+...+..++..+.+||+||++.++..+..++++++++++|+|+++..+++....++..+.+.....+.|++++
T Consensus 47 ~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv 126 (190)
T cd00879 47 HVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLIL 126 (190)
T ss_pred cCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEE
Confidence 46888888888888899999999999999999999999999999999999998888888888888877655567999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-----------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-----------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.......++...++.... ....+.+++|||++|+|++++|+|+++.+
T Consensus 127 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 127 GNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 999999766566666666654221 12346799999999999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-26 Score=135.64 Aligned_cols=125 Identities=28% Similarity=0.464 Sum_probs=106.9
Q ss_pred CCcccceeeE----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|.|+|+.++. +++.++++++|||+||+++++....|++.+|+++++||+.+..||+..+.|+.++-.... ....+
T Consensus 28 istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k-~~v~l 106 (192)
T KOG0083|consen 28 ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK-EAVAL 106 (192)
T ss_pred eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH-hhHhH
Confidence 6788877763 345679999999999999999999999999999999999999999999999998876532 45778
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...+.+ +.+.+.++.+ |.++||++|-|++-.|-.|++.+++
T Consensus 107 ~llgnk~d~a~er~v~~ddg~kla~~y~ip--------fmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 107 MLLGNKCDLAHERAVKRDDGEKLAEAYGIP--------FMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred hhhccccccchhhccccchHHHHHHHHCCC--------ceeccccccccHhHHHHHHHHHHHH
Confidence 999999999765432 5677777664 9999999999999999999998875
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=133.78 Aligned_cols=124 Identities=22% Similarity=0.432 Sum_probs=104.1
Q ss_pred Ccccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.|+|+.++ ++- .+.+++++|||+|+++++.+.-.++++++|+|++||+++.+|+..+..|.-++.-. ...+.|+|
T Consensus 52 sTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvi 130 (193)
T KOG0093|consen 52 STVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVI 130 (193)
T ss_pred eeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEE
Confidence 45664443 332 34589999999999999999999999999999999999999999999998877544 45789999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||||+.+++.. ..+.++|+. .|+++||+.+.|++++|+.++..+.+
T Consensus 131 lvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 131 LVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred EEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhcccccccHHHHHHHHHHHHHH
Confidence 99999999887653 356777765 49999999999999999999988864
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=141.45 Aligned_cols=125 Identities=17% Similarity=0.232 Sum_probs=97.9
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .++.+.+++++|||+|++++..+.+.++++++++++|||++++.+++.+ ..|...+.+.. +++|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~ 107 (178)
T cd04131 30 YVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTK 107 (178)
T ss_pred cCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCC
Confidence 4688885553 2345568899999999999999999999999999999999999999995 78988886642 5799
Q ss_pred EEEEeeCCCCCCC--------------CCH---HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSK---EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~ 134 (137)
+++|+||+|+.+. ... .++...++. ..|++|||++|+| |+++|..+++...
T Consensus 108 iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-------~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 108 VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA-------EIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC-------CEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 9999999998542 111 122222221 2599999999995 9999999998654
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=138.32 Aligned_cols=112 Identities=21% Similarity=0.381 Sum_probs=94.0
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--H
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--E 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 93 (137)
.+.+.+|||||++++...+..+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.... .
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~ 141 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEE 141 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHH
Confidence 48899999999999999999999999999999999999999999999988876544467899999999999754322 1
Q ss_pred ---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 94 ---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++...+ +++++++||++|.|++++|++|++.+.+
T Consensus 142 ~~~~~~~~~--------~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 142 QAKALADKY--------GIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHc--------CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 222222 2359999999999999999999987764
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=137.86 Aligned_cols=126 Identities=20% Similarity=0.300 Sum_probs=101.1
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+. .+. +..+.+++|||||++++..++..+++++|++++|+|.++..+++.+..|+..+.......++|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (164)
T cd04175 30 YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM 109 (164)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3578875443 333 3467889999999999999999999999999999999999999999999988876555578999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++||+|+.+.... . .+.+.+ +++++++||++|.|++++|.++++.+.
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 110 ILVGNKCDLEDERVVGKEQGQNLARQW--------GCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEEEECCcchhccEEcHHHHHHHHHHh--------CCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 999999999754322 1 222222 246999999999999999999998764
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-25 Score=145.29 Aligned_cols=125 Identities=18% Similarity=0.232 Sum_probs=98.8
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
|.||++..+.. ++++.+.+.+|||+|++++..+.+.++++++++++|||+++..+++.+ ..|+..+.... ++.|
T Consensus 42 y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~p 119 (232)
T cd04174 42 YVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTR 119 (232)
T ss_pred cCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCC
Confidence 46898865542 345568999999999999999999999999999999999999999984 78988887542 5789
Q ss_pred EEEEeeCCCCCCC------------C--CH---HHHHHHhCCCCCCCCce-eEEEeecccCC-ChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEA------------L--SK---EDLMEQMGLKSITDREV-CCYMISCKNST-NIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~------------~--~~---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+... . .. .++...+ ++ .|++|||++|+ ||+++|..++..+.+
T Consensus 120 iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~--------~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 120 ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQL--------GAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHc--------CCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 9999999998642 1 11 1222222 23 48999999998 899999999987654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=142.57 Aligned_cols=133 Identities=22% Similarity=0.387 Sum_probs=102.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|..+.....+.+++.+|||+|++.+..++..+++.++++|+|||+++.++++.+..|+..+... ...++|+++|
T Consensus 28 ~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlV 106 (220)
T cd04126 28 TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVV 106 (220)
T ss_pred CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEE
Confidence 368888777666667889999999999999999999999999999999999999999998887777653 2357999999
Q ss_pred eeCCCCCC-------------------CCCH-----HHHHHHhCCC------CCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 81 GNKIDKPE-------------------ALSK-----EDLMEQMGLK------SITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 81 ~nK~D~~~-------------------~~~~-----~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
+||+|+.+ .+.+ ..+...++.. ......+.|++|||++|+||+++|..++
T Consensus 107 gNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 107 GNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred EECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 99999865 1111 1222222210 0001125699999999999999999999
Q ss_pred Hhhh
Q 032598 131 KHSK 134 (137)
Q Consensus 131 ~~~~ 134 (137)
+.+.
T Consensus 187 ~~~~ 190 (220)
T cd04126 187 NLVL 190 (220)
T ss_pred HHHH
Confidence 8765
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=140.54 Aligned_cols=131 Identities=26% Similarity=0.356 Sum_probs=101.1
Q ss_pred CCCccccee--eEEE---eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC---CC
Q 032598 1 MIPTVGFNM--RKVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP---SL 72 (137)
Q Consensus 1 ~~pt~~~~~--~~~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~ 72 (137)
+.||+|..+ ..+. +..+.+.+|||||++++..++..++++++++++|||++++.+++.+..|+..+.... ..
T Consensus 29 ~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~ 108 (201)
T cd04107 29 YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNG 108 (201)
T ss_pred CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCC
Confidence 468888544 3343 446889999999999999999999999999999999999999999998988776432 23
Q ss_pred CCCcEEEEeeCCCCCCC--CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 73 NGIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|+++|+||+|+... ....+.....+.. ..+.++++||++|+|++++|++|++.+.+
T Consensus 109 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 109 EPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999632 2333332222211 11359999999999999999999988754
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=140.20 Aligned_cols=130 Identities=19% Similarity=0.270 Sum_probs=102.5
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. ++.+.+.+++|||||++++..++..+++.++++++|+|+++.++++.+..|...+.......++|+
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pi 113 (189)
T PTZ00369 34 YDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPM 113 (189)
T ss_pred cCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 35888866652 445567899999999999999999999999999999999999999999999888876544468999
Q ss_pred EEEeeCCCCCCCCCHH--HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE--DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+..... +...... ..+++++++||++|.|++++|.+|++.+.+
T Consensus 114 iiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 114 ILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred EEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999986543221 1111111 112469999999999999999999987753
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=137.26 Aligned_cols=128 Identities=20% Similarity=0.409 Sum_probs=101.6
Q ss_pred CCCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.... .+.+.+.+|||+|++.+..++..+++.+|++++|+|+++..+++.+..|+..+.... .++|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p 106 (166)
T cd00877 29 YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIP 106 (166)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCc
Confidence 3678886655432 346899999999999999999999999999999999999999999988998887653 3799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.......+... +. ....+.++++||++|+|++++|++|++.+.+
T Consensus 107 iiiv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 107 IVLCGNKVDIKDRKVKAKQIT-FH----RKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EEEEEEchhcccccCCHHHHH-HH----HHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 999999999974332222211 11 1234579999999999999999999988865
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=131.89 Aligned_cols=131 Identities=77% Similarity=1.258 Sum_probs=109.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.++..+..+++.+.+||+||++.++..+..+++.+|++++|+|+++..++.....++..+.......++|++++
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 107 (159)
T cd04159 28 TIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVL 107 (159)
T ss_pred ccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEE
Confidence 46899998888888889999999999999999999999999999999999998888877777777766544468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+......+...++......+.++++++||++|.|+++++++|.+
T Consensus 108 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 108 GNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 999999776555556666554444445678999999999999999999975
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=137.60 Aligned_cols=131 Identities=17% Similarity=0.194 Sum_probs=97.3
Q ss_pred CCCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+..+ .+++++|||+|++++..++..+++.+|++++|||++++++++.+. .|+..+... .+++|
T Consensus 30 ~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~p 107 (175)
T cd01874 30 YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTP 107 (175)
T ss_pred CCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 5689986664 34433 488999999999999999999999999999999999999999986 587777553 25799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCC---------CC-CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLK---------SI-TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++++||+|+.......+........ .. ....+.++++||++|+|++++|+.++.++
T Consensus 108 iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 108 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999986532211100000000 00 01135799999999999999999998864
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=142.96 Aligned_cols=128 Identities=20% Similarity=0.350 Sum_probs=101.9
Q ss_pred CCCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+.... .+.+.+.+|||+|++++..++..+++.++++|+|||+++..+++.+..|+..+... ..++|
T Consensus 42 ~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~p 119 (219)
T PLN03071 42 YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIP 119 (219)
T ss_pred cCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCc
Confidence 4689987665432 34589999999999999999999999999999999999999999999999988764 25799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.......+.. .+. ....+.++++||++|+|++++|++|++.+.+
T Consensus 120 iilvgNK~Dl~~~~v~~~~~-~~~----~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 120 IVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred EEEEEEchhhhhccCCHHHH-HHH----HhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 99999999986432211111 111 1124569999999999999999999988753
|
|
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-25 Score=139.12 Aligned_cols=131 Identities=24% Similarity=0.391 Sum_probs=103.9
Q ss_pred CCcccceee----EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC---CC
Q 032598 2 IPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL---NG 74 (137)
Q Consensus 2 ~pt~~~~~~----~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~ 74 (137)
-.|||..+. .++..-+.+++|||+||++|.++.-.++++||.+++|||..++++++.+..|..+++..... ..
T Consensus 39 kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~ 118 (210)
T KOG0394|consen 39 KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPET 118 (210)
T ss_pred ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCc
Confidence 467884433 35555688999999999999999999999999999999999999999999999999987542 35
Q ss_pred CcEEEEeeCCCCCCCC--CH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEAL--SK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.|++++|||+|+.+.. .+ .......-. ...+++|+++|||.+.||.++|..+.+.+..
T Consensus 119 FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 119 FPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred ccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 8999999999997632 21 112222211 1236689999999999999999999988764
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=135.97 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=100.3
Q ss_pred CCcccceee--EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+ +.+.+++.+|||||++++...+..++++++++++|+|++++++++.+..|+..+.... .++.|+
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i 110 (166)
T cd04122 32 PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVI 110 (166)
T ss_pred CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 467775543 23 3345789999999999999999999999999999999999999999999988875542 357899
Q ss_pred EEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... .+...... ..+++++++||++|+|++++|.++++.+.+
T Consensus 111 iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 111 FLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred EEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999765432 22222111 124579999999999999999999988754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-24 Score=134.38 Aligned_cols=130 Identities=32% Similarity=0.651 Sum_probs=111.3
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||.|++...+...+..+.+||+||+..+...+..+++.++++++|+|+++..++.....++..+.+.....++|+++++
T Consensus 43 ~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 122 (173)
T cd04155 43 TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFA 122 (173)
T ss_pred CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 58889888888888999999999999999999999999999999999999988888777777777665444679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
||+|+.......++.+.++......+.++++++||++|+|++++|+||++
T Consensus 123 nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 123 NKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 99999776667777777776555556677899999999999999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=139.47 Aligned_cols=132 Identities=15% Similarity=0.226 Sum_probs=99.7
Q ss_pred CCCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CCCC
Q 032598 1 MIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~ 75 (137)
+.||++..+. . +++..+.+++|||||++++..++..+++.+|++++|||+++..+++.+..|+..+..... ..++
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 107 (190)
T cd04144 28 YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADV 107 (190)
T ss_pred CCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 3577775443 2 333446799999999999999999999999999999999999999999889888765432 3578
Q ss_pred cEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 76 PLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
|+++++||+|+....... .....+. ...++.++++||++|+|++++|+++++.+.++
T Consensus 108 piilvgNK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 108 PIMIVGNKCDKVYEREVSTEEGAALA----RRLGCEFIEASAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred CEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999996543321 1111111 01124699999999999999999999887643
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=135.46 Aligned_cols=128 Identities=18% Similarity=0.283 Sum_probs=98.3
Q ss_pred CCccccee-eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNM-RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~-~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+ ..+. +..+.+++|||||++++..++..+++.++++++|+|+++..+++.+..|+..+.......++|++
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (163)
T cd04136 31 DPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV 110 (163)
T ss_pred CCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 57776333 2333 34578899999999999999999999999999999999999999999998888765444679999
Q ss_pred EEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+.+..... +....+.. ..+.+++++||++|+|++++|+++++.+
T Consensus 111 lv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 111 LVGNKCDLEDERVVSREEGQALAR----QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEEECccccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999986543221 11111111 0124699999999999999999998765
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=138.67 Aligned_cols=129 Identities=21% Similarity=0.356 Sum_probs=98.6
Q ss_pred CCCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||+|.++. .+..+ .+.+.+|||+|++++..++..+++.++++++|+|++++.+++.+..|+..+.+... ...|
T Consensus 29 ~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p 107 (182)
T cd04128 29 YIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP 107 (182)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE
Confidence 5789997663 44433 48899999999999999999999999999999999999999999999998876432 4567
Q ss_pred EEEEeeCCCCCCCCC------HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+..... ..+....+. ...++.++++||++|+|++++|+++++.+.+
T Consensus 108 -ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a----~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 108 -ILVGTKYDLFADLPPEEQEEITKQARKYA----KAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred -EEEEEchhccccccchhhhhhHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 67899999853211 111111111 1123569999999999999999999987754
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=135.72 Aligned_cols=131 Identities=21% Similarity=0.350 Sum_probs=100.0
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||++..+. .+. +..+++++|||||++++..++..+++.+|++++|+|+++.++++.+..|+..+.+.......|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 108 (170)
T cd04108 29 YKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVL 108 (170)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 4688885553 333 345789999999999999999999999999999999999989999999999886653334578
Q ss_pred EEEEeeCCCCCCCCCH---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.... .+....+.. ..+..++++||++|.|++++|+.|++.+.+
T Consensus 109 iilVgnK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 109 LFLVGTKKDLSSPAQYALMEQDAIKLAA----EMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EEEEEEChhcCccccccccHHHHHHHHH----HcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999998654321 111111110 012358999999999999999999988754
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=130.03 Aligned_cols=128 Identities=23% Similarity=0.479 Sum_probs=104.1
Q ss_pred CCCcccce--eeEE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFN--MRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~--~~~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|+.|+|.. ++++ +++.+++++|||+|+++|+.+...|+++.++++.|||.++.+||....+|++++... ....|
T Consensus 37 YitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~ 114 (198)
T KOG0079|consen 37 YITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVP 114 (198)
T ss_pred eEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--Ccccc
Confidence 67888844 4454 467799999999999999999999999999999999999999999999999999765 34788
Q ss_pred EEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
-++|+||.|.++.+.+. +-...+.. .-++.+|++||+..+|++..|.-|.+.+.
T Consensus 115 ~vLVGNK~d~~~RrvV~t~dAr~~A~----~mgie~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 115 KVLVGNKNDDPERRVVDTEDARAFAL----QMGIELFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred ceecccCCCCccceeeehHHHHHHHH----hcCchheehhhhhcccchHHHHHHHHHHH
Confidence 99999999998765432 11222211 11346999999999999999999988765
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=132.38 Aligned_cols=125 Identities=24% Similarity=0.379 Sum_probs=102.4
Q ss_pred CCcccceee--EE---EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC-C
Q 032598 2 IPTVGFNMR--KV---TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG-I 75 (137)
Q Consensus 2 ~pt~~~~~~--~~---~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~ 75 (137)
-||+|..+. -+ ++..+++++|||+||+++++....|++++-|+++|||+++.+||+.+..|..+.......+. +
T Consensus 38 dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~ 117 (213)
T KOG0091|consen 38 DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKV 117 (213)
T ss_pred CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCee
Confidence 388885553 23 25579999999999999999999999999999999999999999999999998877655444 4
Q ss_pred cEEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 76 PLLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
-+.+|++|+|+...+.+ +++....+ ..|+++||++|.||++.|.-+.+.+-
T Consensus 118 VFlLVGhKsDL~SqRqVt~EEaEklAa~hg--------M~FVETSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 118 VFLLVGHKSDLQSQRQVTAEEAEKLAASHG--------MAFVETSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred EEEEeccccchhhhccccHHHHHHHHHhcC--------ceEEEecccCCCcHHHHHHHHHHHHH
Confidence 45788999999987664 23444444 45999999999999999999887764
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=131.94 Aligned_cols=127 Identities=20% Similarity=0.363 Sum_probs=99.4
Q ss_pred CCCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++. .+... .+++.+|||+|++++..++..+++.+|++++|||+++.++++.+..|+..+.... ..++|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~ 107 (161)
T cd04117 29 HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQ 107 (161)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCe
Confidence 3688886543 34443 4788999999999999999999999999999999999999999999998886543 25799
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++++||+|+.+.+.+ .+....+.. ..+++++++||++|.|++++|.+|++.
T Consensus 108 iilvgnK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 108 KILIGNKADEEQKRQVGDEQGNKLAK----EYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEEECcccccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999765432 122222211 112469999999999999999999875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=133.61 Aligned_cols=128 Identities=14% Similarity=0.235 Sum_probs=97.6
Q ss_pred CCcccce-eeEE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFN-MRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~-~~~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++.. ...+ ++....+++|||||++++..++..+++++|++++|+|+++.++++++..|+..+.......++|++
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv 110 (163)
T cd04176 31 DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110 (163)
T ss_pred CCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 5666522 2233 334567899999999999999999999999999999999999999999998888775444689999
Q ss_pred EEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+....... .....+.. ..+++++++||++|.|++++|.++++.+
T Consensus 111 iv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 111 LVGNKVDLESEREVSSAEGRALAE----EWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEECccchhcCccCHHHHHHHHH----HhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999986533221 11122211 1124689999999999999999998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=132.28 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=98.6
Q ss_pred CCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. . +++..+.+++|||||++++..++..+++.+|++++|+|+++..+++.+..|+..+.+.....++|++
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 111 (164)
T cd04145 32 DPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI 111 (164)
T ss_pred CCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 466664333 2 3344578999999999999999999999999999999999999999999998888765445689999
Q ss_pred EEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+...... .+.....+ ..++.++++||++|+|++++|+++++.+
T Consensus 112 iv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 112 LVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred EEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 99999999654322 22211111 1134589999999999999999998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-24 Score=139.48 Aligned_cols=126 Identities=18% Similarity=0.245 Sum_probs=97.2
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
|.||++.++. .+++..+.+.+|||+|++.+..+++.+++.+|++++|||++++++++.+. .|...+... .++.|
T Consensus 30 y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~--~~~~p 107 (222)
T cd04173 30 YVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF--CPNAK 107 (222)
T ss_pred cCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence 5799987664 24445688999999999999999999999999999999999999999985 566555332 36799
Q ss_pred EEEEeeCCCCCCCCCH-----------------HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-----------------EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+...... ..+...++ .+.|++|||++++| |+++|..+..+...
T Consensus 108 iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~-------~~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 108 VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVG-------AVSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcC-------CCEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 9999999999653210 11111221 13699999999985 99999999987654
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-24 Score=137.05 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=99.7
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++.++.. +++..+.+++|||+|++.+..++..+++.++++++|||+++..+++.+. .|+..+... ..+.|
T Consensus 29 ~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~p 106 (189)
T cd04134 29 YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVK 106 (189)
T ss_pred cCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 45888765542 3334588999999999999999999999999999999999999998876 588777653 25799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCC---------CC-CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLK---------SI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.......+........ .. ....+.++++||++|+|++++|.++++.+..
T Consensus 107 iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 107 LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 99999999997654322211111000 00 1123579999999999999999999988764
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=132.43 Aligned_cols=126 Identities=21% Similarity=0.415 Sum_probs=99.6
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+. .+. .+.+.+.+|||+|++++...+..+++.++++++|+|+++.++++.+..|+..+.... ....|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 108 (165)
T cd01865 30 FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQ 108 (165)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCC
Confidence 3577775443 333 345889999999999999999999999999999999999999999999998886542 24689
Q ss_pred EEEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... . ++...+ +++++++||++|.|++++|++|++.+.+
T Consensus 109 iivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 109 VILVGNKCDMEDERVVSSERGRQLADQL--------GFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred EEEEEECcccCcccccCHHHHHHHHHHc--------CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999755332 2 222222 2359999999999999999999987754
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=134.33 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=94.3
Q ss_pred CCCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+++..+++.+|||+|++.+..++..+++++|++++|||++++++++.+. .|+..+... ..+.|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~p 107 (174)
T cd01871 30 YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTP 107 (174)
T ss_pred CCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 4677774433 23344588999999999999999999999999999999999999999986 577766543 25799
Q ss_pred EEEEeeCCCCCCCCC-HHHHHHHhCCC---------CCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 77 LLVLGNKIDKPEALS-KEDLMEQMGLK---------SITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++++||+|+.+... ...+....... ......+.+++|||++|+|++++|+.+++.
T Consensus 108 iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 108 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 999999999964321 11111100000 000112468999999999999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=132.15 Aligned_cols=129 Identities=24% Similarity=0.396 Sum_probs=101.1
Q ss_pred CCCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+ ..+.. ..+.+++|||||++++...+..+++.+|++++|+|+++.++++.+..|+..+.... ..+.|
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 110 (167)
T cd01867 32 FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVE 110 (167)
T ss_pred cccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCc
Confidence 467888544 33443 34789999999999999999999999999999999999999999999998887642 35789
Q ss_pred EEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+... ..+...... ..+++++++||++|+|++++|.++++.+.+
T Consensus 111 ~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 111 RMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred EEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999975432 222222111 113469999999999999999999998865
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=132.87 Aligned_cols=129 Identities=19% Similarity=0.334 Sum_probs=100.6
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC----
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL---- 72 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---- 72 (137)
+.||++..+. .+. +..+.+++|||||++.+..++..+++.++++++|+|++++.+++.+..|+..+.+....
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~ 108 (168)
T cd04119 29 YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNM 108 (168)
T ss_pred CCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccC
Confidence 4688885543 333 45689999999999999999999999999999999999999999999999988765432
Q ss_pred CCCcEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 73 NGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++|+++++||+|+.+.. ...+...... ..++.++++||++|+|++++|++|.+.+.
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 579999999999996432 2222211111 11246999999999999999999998875
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=129.56 Aligned_cols=127 Identities=22% Similarity=0.388 Sum_probs=102.6
Q ss_pred Ccccce--eeE--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFN--MRK--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~--~~~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.|||.. .++ +.++++++++|||+|++++++....|++.|+++|+|||++...+|+-+..|+.++.+..+ ...-.+
T Consensus 38 atigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlki 116 (213)
T KOG0095|consen 38 ATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKI 116 (213)
T ss_pred ceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEE
Confidence 466633 333 557789999999999999999999999999999999999999999999999999988755 456679
Q ss_pred EEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||.|+.+.+.+ +++-+.+... ....|+++||+..+|++.+|..++-.+.
T Consensus 117 lvgnk~d~~drrevp~qigeefs~~----qdmyfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 117 LVGNKIDLADRREVPQQIGEEFSEA----QDMYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred eeccccchhhhhhhhHHHHHHHHHh----hhhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 99999999876543 3444444422 2345899999999999999999886553
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-24 Score=128.91 Aligned_cols=126 Identities=24% Similarity=0.412 Sum_probs=104.9
Q ss_pred CCcccceeeE----EEe---------CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhc
Q 032598 2 IPTVGFNMRK----VTK---------GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS 68 (137)
Q Consensus 2 ~pt~~~~~~~----~~~---------~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 68 (137)
|.|+|+.++. ++. ..+.+++|||+||++++++.-.+++.|=|++++||+++.+||-.++.|+.++..
T Consensus 39 IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~ 118 (219)
T KOG0081|consen 39 ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQT 118 (219)
T ss_pred EEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHH
Confidence 5778866653 221 248899999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcEEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 69 KPSLNGIPLLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 69 ~~~~~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
..-..++.+++++||+|+.+.+.+ ..+.+.++. +|+++||.+|.||++..+-+...+.+
T Consensus 119 hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl--------PYfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 119 HAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL--------PYFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred hhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC--------CeeeeccccCcCHHHHHHHHHHHHHH
Confidence 666667889999999999877654 345666665 49999999999999988888776653
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=131.41 Aligned_cols=127 Identities=15% Similarity=0.225 Sum_probs=97.9
Q ss_pred CCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. . ++...+.+.+|||+|++++..++..+++.++++++|+|+++..+++.+..|...+.+.....++|++
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii 110 (162)
T cd04138 31 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110 (162)
T ss_pred CCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 577774443 2 3334467899999999999999999999999999999999988999888888888765545689999
Q ss_pred EEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+.+... ..+.....+. .++.++++||++|.|++++|+++++.+
T Consensus 111 vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 111 LVGNKCDLAARTVSSRQGQDLAKS-----YGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEEECcccccceecHHHHHHHHHH-----hCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 9999999965322 2222221111 133599999999999999999998764
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-24 Score=137.17 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=85.1
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCC-
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEA- 89 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~- 89 (137)
+++..+.+++|||+|++. .....+++++|++++|||+++..+++.+. .|...+.... +++|+++|+||+|+...
T Consensus 61 ~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~ 136 (195)
T cd01873 61 VDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYAD 136 (195)
T ss_pred eCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccc
Confidence 455679999999999975 24556899999999999999999999986 5888775542 47899999999998641
Q ss_pred ------------------CCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 90 ------------------LSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 90 ------------------~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+.+ .+....+. ...++.|++|||++|+||+++|+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a----~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVA----KELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHH----HHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 11111111 1123469999999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=134.94 Aligned_cols=131 Identities=19% Similarity=0.276 Sum_probs=99.9
Q ss_pred CCCcccceee--EEEe---CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CC
Q 032598 1 MIPTVGFNMR--KVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LN 73 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~---~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~ 73 (137)
+.||++..+. .+.. ..+.+.+|||+|++.+..++..+++.+|++++|+|++++++++.+..|+..+.+... ..
T Consensus 29 ~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~ 108 (215)
T cd04109 29 YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSET 108 (215)
T ss_pred CCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCC
Confidence 4588885543 3432 358999999999999999999999999999999999999999999999888876532 24
Q ss_pred CCcEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++|+||+|+.+.+... +....+.. ..++.++++||++|+|++++|+++++.+..
T Consensus 109 ~~piilVgNK~DL~~~~~v~~~~~~~~~~----~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 109 QPLVVLVGNKTDLEHNRTVKDDKHARFAQ----ANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CceEEEEEECcccccccccCHHHHHHHHH----HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999997543321 11111111 012458999999999999999999988753
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=130.26 Aligned_cols=128 Identities=23% Similarity=0.409 Sum_probs=99.7
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+++|||||++++...+..+++.+|++++|+|+++.+++..+..|+..+.... ..+.|+
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~ 110 (166)
T cd01869 32 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNK 110 (166)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcE
Confidence 57777443 33443 34789999999999999999999999999999999999999999999998886543 256899
Q ss_pred EEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...... .+...... ..+++++++||++|+|++++|.++++.+.+
T Consensus 111 iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 111 LLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred EEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 999999998654332 22222111 113469999999999999999999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=133.18 Aligned_cols=130 Identities=27% Similarity=0.427 Sum_probs=99.7
Q ss_pred CCCcccceeeE--E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. + ++..+.+++|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~p 108 (191)
T cd04112 30 FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVV 108 (191)
T ss_pred cCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCc
Confidence 35777755432 3 3345889999999999999999999999999999999999999999999988887642 24789
Q ss_pred EEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++++||+|+...+. ..+. ..+.. ..+++++++||++|+|++++|.+|++.+.++
T Consensus 109 iiiv~NK~Dl~~~~~~~~~~~-~~l~~----~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 109 IMLLGNKADMSGERVVKREDG-ERLAK----EYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred EEEEEEcccchhccccCHHHH-HHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999964332 1211 11110 0124699999999999999999999887653
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=129.78 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=98.9
Q ss_pred CCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. . ++...+.+.+|||||++++..++..+++.++++++|+|+++.++++.+..|...+.......++|++
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 109 (164)
T smart00173 30 DPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV 109 (164)
T ss_pred CCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 356653332 2 3334578999999999999999999999999999999999999999998888887765555679999
Q ss_pred EEeeCCCCCCCCCH--HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK--ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+...... .. ....+ +..++++||++|+|++++|++|++.+.+
T Consensus 110 ~v~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 110 LVGNKCDLESERVVSTEEGKELARQW--------GCPFLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred EEEECccccccceEcHHHHHHHHHHc--------CCEEEEeecCCCCCHHHHHHHHHHHHhh
Confidence 99999999754321 11 22222 2469999999999999999999988753
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-24 Score=131.66 Aligned_cols=135 Identities=32% Similarity=0.622 Sum_probs=120.4
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+|.|..+++..+..+.+||.+||+..+++|..|+..++++++++|+++++.++.....++.........+.|+++.+
T Consensus 54 ~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la 133 (197)
T KOG0076|consen 54 TPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA 133 (197)
T ss_pred ecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence 48999999999988999999999999999999999999999999999999999999988888888887777899999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||.|+.+.....++...++.... ..+.+.+.++||..|+||++...|++..+.++
T Consensus 134 nkqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 134 NKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 99999988777777777764222 34567899999999999999999999988654
|
|
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-23 Score=134.70 Aligned_cols=130 Identities=21% Similarity=0.336 Sum_probs=100.4
Q ss_pred CCcccceee--EEE---eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMR--KVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~--~~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||+|.++. .+. +..+.+++|||+|++++..++..+++.+|++++|||++++.+++.+..|+..+........+|
T Consensus 32 ~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~ 111 (211)
T cd04111 32 DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV 111 (211)
T ss_pred CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 477775543 333 235789999999999999999999999999999999999999999999999887654445688
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... .+....+.. ..++.++++||++|+|++++|++|++.+.+
T Consensus 112 iilvgNK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 112 FILVGHKCDLESQRQVTREEAEKLAK----DLGMKYIETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred EEEEEEccccccccccCHHHHHHHHH----HhCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999764332 111122211 112469999999999999999999987753
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-23 Score=129.52 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=96.4
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC--CCCCC
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP--SLNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~ 75 (137)
+.||++..+.. .+.+.+.+.+|||||++++..++..+++.++++++|+|+++.++++.+..|+..+.... ...++
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (165)
T cd04140 30 YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI 109 (165)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 35777754443 23455889999999999999999999999999999999999999998888877665432 23679
Q ss_pred cEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 76 PLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
|+++++||+|+...+... +....+.. ..++.++++||++|+|++++|++|++.
T Consensus 110 piilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 110 PIMLVGNKCDESHKREVSSNEGAACAT----EWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CEEEEEECccccccCeecHHHHHHHHH----HhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 999999999997643321 11111110 123469999999999999999999864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-23 Score=132.71 Aligned_cols=128 Identities=23% Similarity=0.441 Sum_probs=100.4
Q ss_pred CCCccccee--eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+ ..+. +..+.+.+|||||++.++.++..+++.++++++|+|++++++++.+..|+..+... ....|
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~p 112 (199)
T cd04110 35 YITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDVC 112 (199)
T ss_pred cCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCC
Confidence 468888554 3444 33478999999999999999999999999999999999999999999999887654 25689
Q ss_pred EEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... .+....... .++.++++||++|.|++++|++|.+.+..
T Consensus 113 iivVgNK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 113 KVLVGNKNDDPERKVVETEDAYKFAGQ-----MGISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred EEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 9999999999754332 222221111 12469999999999999999999988764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-23 Score=129.05 Aligned_cols=118 Identities=21% Similarity=0.331 Sum_probs=93.9
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
++.+.+.+++|||+|++++..++..+++.+|++++|+|++++.+++.+..|+..+.+. .+++|+++++||+|+....
T Consensus 44 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~- 120 (161)
T cd04124 44 FEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV- 120 (161)
T ss_pred ECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-
Confidence 3345678999999999999999999999999999999999998998888898888653 2579999999999985321
Q ss_pred HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 92 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
..+.. .+. ...+++++++||++|.|++++|+.+++.+.+++
T Consensus 121 ~~~~~-~~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 161 (161)
T cd04124 121 TQKKF-NFA----EKHNLPLYYVSAADGTNVVKLFQDAIKLAVSYK 161 (161)
T ss_pred HHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 11111 111 011356899999999999999999999887764
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-23 Score=130.07 Aligned_cols=127 Identities=24% Similarity=0.395 Sum_probs=97.2
Q ss_pred CCcccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC---CCC
Q 032598 2 IPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS---LNG 74 (137)
Q Consensus 2 ~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~ 74 (137)
.||+|..+. . ++.+.+.+++|||||+++++.++..+++.+|++++|+|+++.++++.+..|...+..... ..+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 114 (170)
T cd04116 35 FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPES 114 (170)
T ss_pred CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCC
Confidence 567775543 2 334568899999999999999999999999999999999999999999888887765432 256
Q ss_pred CcEEEEeeCCCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 75 IPLLVLGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+|+++++||+|+... ....+....... ...+.++++||++|+|++++|.++++.
T Consensus 115 ~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 115 FPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 899999999998632 222222222211 112368999999999999999999875
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=126.83 Aligned_cols=123 Identities=24% Similarity=0.398 Sum_probs=96.5
Q ss_pred CCcccce--eeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~--~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||.+.. ...+..++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++|+
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ 111 (165)
T cd01864 33 GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVL 111 (165)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcE
Confidence 3566633 34455444 789999999999999999999999999999999999999999999999886542 367999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
++|+||+|+.+.... . .+.+.++ ...++++||++|.|++++|+++++.
T Consensus 112 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 112 LLIGNKCDLEEQREVLFEEACTLAEKNG-------MLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEECcccccccccCHHHHHHHHHHcC-------CcEEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999754321 1 2222222 2358999999999999999999875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=134.21 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=100.3
Q ss_pred CCCcccc-eeeEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-------
Q 032598 1 MIPTVGF-NMRKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP------- 70 (137)
Q Consensus 1 ~~pt~~~-~~~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------- 70 (137)
+.||++. ....+. ++.+.+++|||+|++.+..++..++..+|++++|||+++.++++.+..|++.+....
T Consensus 29 y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~ 108 (247)
T cd04143 29 YTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKT 108 (247)
T ss_pred CCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 4688873 223333 345889999999999999998889999999999999999999999998888886531
Q ss_pred -CCCCCcEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 71 -SLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 71 -~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...++|+++++||+|+.... ...++...++.. ..+.++++||++|+|++++|++|+..+
T Consensus 109 ~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 109 KENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----ENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----CCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 23579999999999997532 334444443321 245699999999999999999999865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=130.42 Aligned_cols=122 Identities=18% Similarity=0.280 Sum_probs=89.5
Q ss_pred CcccceeeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 3 PTVGFNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 3 pt~~~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
|+.+.....+..++ +.+.+|||+|++. ..+++.+|++++|||+++.++++.+..|+..+.......++|++++
T Consensus 31 ~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilv 105 (158)
T cd04103 31 PEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILV 105 (158)
T ss_pred CCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 44443334444444 7799999999975 3467889999999999999999999999998877655567999999
Q ss_pred eeCCCCCC--CCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 81 GNKIDKPE--ALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 81 ~nK~D~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+||.|+.. .+... +....+.. ....+.|++|||++|+||+++|..+++.
T Consensus 106 gnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 106 GTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred eeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 99999853 22221 11122211 1123579999999999999999999865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=127.62 Aligned_cols=121 Identities=21% Similarity=0.428 Sum_probs=96.5
Q ss_pred CCcccceee--EEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 2 IPTVGFNMR--KVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 2 ~pt~~~~~~--~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
.||++.++. .+. ...+++++|||||++++...+..+++.++++++|+|++++++++.+..|+..+... ..++
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~ 107 (162)
T cd04106 30 KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE--CGDI 107 (162)
T ss_pred CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCC
Confidence 577775553 222 34688999999999999999999999999999999999999999998998887543 3579
Q ss_pred cEEEEeeCCCCCCCCCH--HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 76 PLLVLGNKIDKPEALSK--ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
|+++++||+|+...... ++ +...+ +++++++||++|.|++++|++|...
T Consensus 108 p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 108 PMVLVQTKIDLLDQAVITNEEAEALAKRL--------QLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CEEEEEEChhcccccCCCHHHHHHHHHHc--------CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999998654332 22 23322 2369999999999999999999764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=129.60 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=96.0
Q ss_pred CCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. .+ +++.+.+.+|||||++.+..++..+++.+|++++|+|+++.++++.+. .|+..+... .+++|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~pi 105 (174)
T smart00174 28 VPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPI 105 (174)
T ss_pred CCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCE
Confidence 466664443 23 334578999999999999999999999999999999999999999886 588777653 257999
Q ss_pred EEEeeCCCCCCCCCH-----------------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----------------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...... ..+...++ ...++++||++|+|++++|+.+++.+.+
T Consensus 106 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 106 ILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG-------AVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred EEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC-------CcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 999999998653211 01222222 1268999999999999999999988753
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=128.32 Aligned_cols=129 Identities=27% Similarity=0.467 Sum_probs=99.6
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccH-HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~-~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++..+. .+. ...+.+.+|||+|+++++ .++..+++++|++++|+|++++.+++.+..|+..+.......++|
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 111 (170)
T cd04115 32 EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP 111 (170)
T ss_pred ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC
Confidence 467764443 333 344889999999999887 578889999999999999999999999999998887665456899
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeeccc---CCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKN---STNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+...... ......+.. ..+++++++||++ ++|++++|.++++.++
T Consensus 112 ~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 112 RILVGNKCDLREQIQVPTDLAQRFAD----AHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred EEEEEECccchhhcCCCHHHHHHHHH----HcCCcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 9999999998755432 222222221 1135699999999 8999999999998764
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=132.97 Aligned_cols=130 Identities=19% Similarity=0.291 Sum_probs=101.8
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++. .+. ...+.+.+|||+|++++..++..+++.++++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 41 ~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 119 (216)
T PLN03110 41 SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIV 119 (216)
T ss_pred CCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCe
Confidence 3578886553 344 345799999999999999999999999999999999999999999999988876542 25799
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+...... .+....+.. ...++++++||++|+|++++|+++++.+.+
T Consensus 120 iiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 120 IMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred EEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999998654432 222222221 124579999999999999999999987743
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-24 Score=128.81 Aligned_cols=114 Identities=25% Similarity=0.374 Sum_probs=95.5
Q ss_pred EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 13 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
.+...++.+|||+||++|-++-+.|+++++|.++|||++|.+||+.+..|..++.+- ....+.+++|+||+|+.+.+.+
T Consensus 58 ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~V 136 (218)
T KOG0088|consen 58 EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQV 136 (218)
T ss_pred ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhh
Confidence 345688999999999999999999999999999999999999999999999888653 2356889999999999876554
Q ss_pred H-----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 93 E-----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 93 ~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
. ...+..+. .++++||+.+.||+++|+.+...+.+
T Consensus 137 t~qeAe~YAesvGA--------~y~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 137 TRQEAEAYAESVGA--------LYMETSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred hHHHHHHHHHhhch--------hheecccccccCHHHHHHHHHHHHHH
Confidence 2 22333333 49999999999999999999877654
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=129.66 Aligned_cols=130 Identities=20% Similarity=0.325 Sum_probs=99.8
Q ss_pred CCCccccee--eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+ ..+. .+.+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+..... ..+|
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~ 107 (188)
T cd04125 29 TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR-ENVI 107 (188)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCe
Confidence 357887443 2333 3457889999999999999999999999999999999999999999999888875432 4589
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... ......+.. ..++.++++||++|.|++++|.++++.+.+
T Consensus 108 ~ivv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 108 KVIVANKSDLVNNKVVDSNIAKSFCD----SLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred EEEEEECCCCcccccCCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999998754322 111112211 113369999999999999999999988764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=126.67 Aligned_cols=130 Identities=22% Similarity=0.277 Sum_probs=99.2
Q ss_pred CCCcccceeeE-E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. + +...+.+++|||||++++..+++.+++.++++++|+|.+++++++....|...+.......+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (168)
T cd04177 30 YDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM 109 (168)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCE
Confidence 35777754432 3 33457899999999999999999999999999999999999999999888888876544468999
Q ss_pred EEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+....... +....+.. ......++++||++|+|++++|++++..+
T Consensus 110 iiv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 110 VLVGNKADLEDDRQVSREDGVSLSQ---QWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEEEChhccccCccCHHHHHHHHH---HcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999986544321 11111110 01124699999999999999999999765
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-22 Score=124.29 Aligned_cols=126 Identities=19% Similarity=0.320 Sum_probs=98.0
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. .+..+ .+.+++||+||++++..++..+++.++++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 111 (165)
T cd01868 33 KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVI 111 (165)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 577875443 34433 3789999999999999999999999999999999999999999999988886653 246899
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+..... ..+....... .++.++++||++|+|++++|+++++.+
T Consensus 112 ~vv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 112 MLVGNKSDLRHLRAVPTEEAKAFAEK-----NGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEEECccccccccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999875432 2222222211 235699999999999999999998764
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-22 Score=124.54 Aligned_cols=126 Identities=16% Similarity=0.274 Sum_probs=97.3
Q ss_pred CCcccceeeE--EE---eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~--~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||+|..+.. +. +..+++.+|||||++.+..++..+++.+|++++|+|+++..++..+..|+..+.... .++|
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p 109 (164)
T cd04101 32 LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMP 109 (164)
T ss_pred CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCC
Confidence 5677755432 22 345899999999999999999999999999999999999999988888988876542 5699
Q ss_pred EEEEeeCCCCCCCCCHHH-HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 77 LLVLGNKIDKPEALSKED-LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++++||+|+.+...... ....+.. ..++.++++||++|.|++++|+.+++.+
T Consensus 110 ~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 110 GVLVGNKMDLADKAEVTDAQAQAFAQ----ANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEEEECcccccccCCCHHHHHHHHH----HcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 999999999965533221 1112211 1134689999999999999999999875
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=128.22 Aligned_cols=126 Identities=17% Similarity=0.271 Sum_probs=96.6
Q ss_pred CCCcccceee-EEE---eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCC
Q 032598 1 MIPTVGFNMR-KVT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~-~~~---~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (137)
+.||++.++. .+. .+.+.+.+|||||++++..++..+++++|++++|+|+++..+++.+. .|+..+... .+++
T Consensus 29 ~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~ 106 (187)
T cd04132 29 YVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGT 106 (187)
T ss_pred CCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCC
Confidence 3577775543 233 33578999999999999999999999999999999999999999886 477666543 2579
Q ss_pred cEEEEeeCCCCCCCC------CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPEAL------SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++++||.|+.... ... ++...++. ..++++||++|+|++++|..+++.+.+
T Consensus 107 piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 107 PIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-------FAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred CEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC-------cEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 999999999986532 111 22222221 158999999999999999999988764
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=125.16 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=99.2
Q ss_pred CCcccceee--EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|.... .+ ..+...+.+|||||++++......+++.+|++++|+|++++.+++.+..|+..+.... .+++|+
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pv 112 (168)
T cd01866 34 DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTI 112 (168)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcE
Confidence 356664432 23 3345789999999999999999999999999999999999999999999998886643 367999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||.|+.+... ..+....... .++.++++||++++|++++|.++++.+.+
T Consensus 113 ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 113 MLIGNKCDLESRREVSYEEGEAFAKE-----HGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred EEEEECcccccccCCCHHHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999974332 2222222211 23469999999999999999999988754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=126.25 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=96.4
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. +....+++|||||++.+...+..+++.+|++++|+|+++.+++..+..|+..+.... .+++|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i 108 (161)
T cd04113 30 QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVV 108 (161)
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 355553332 233 344789999999999999999999999999999999999999999999988775432 367999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+..... ..+.....+. ..+.++++||+++.|++++|+++++.+
T Consensus 109 ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 109 ILVGNKSDLADQREVTFLEASRFAQE-----NGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred EEEEEchhcchhccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 99999999965432 2222222221 125699999999999999999998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-22 Score=127.52 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=107.4
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|.||++..+.+ ++++...+.++||+|++.+..+...+++.++|+++||++++..||+.+..+.+.+........+|+
T Consensus 32 y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~Pi 111 (196)
T KOG0395|consen 32 YDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPI 111 (196)
T ss_pred cCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCE
Confidence 57999865543 666779999999999999999999999999999999999999999999999999966656567999
Q ss_pred EEEeeCCCCCCCCCHHHH-HHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKEDL-MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+...+.+..- ...+ .....+.|+++||+.+.+++++|..+++.+..
T Consensus 112 vlVGNK~Dl~~~R~V~~eeg~~l----a~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 112 ILVGNKCDLERERQVSEEEGKAL----ARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred EEEEEcccchhccccCHHHHHHH----HHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 999999999875443211 1122 11224459999999999999999999998764
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=126.90 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=97.3
Q ss_pred CCCccccee--eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~--~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..+ ..+. +..+.+.+|||+|++++..++..+++.+|++++|+|+++..+++.+..|+..+... ..++|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~p 107 (193)
T cd04118 30 YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCK 107 (193)
T ss_pred cccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCC
Confidence 457777444 2343 34477889999999999999999999999999999999999999888888887654 24799
Q ss_pred EEEEeeCCCCCCCCC------HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+..... ..+... +. ...++.++++||++|+|++++|+++++.+.+
T Consensus 108 iilv~nK~Dl~~~~~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 108 IYLCGTKSDLIEQDRSLRQVDFHDVQD-FA----DEIKAQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred EEEEEEcccccccccccCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999854321 111111 11 0113468999999999999999999988754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=123.41 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=96.5
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. ++.+.+.+||++|++.+..++..+++.+|++++|+|++++.+++.+..|+..+... .++|
T Consensus 34 ~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p 110 (169)
T cd01892 34 YSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIP 110 (169)
T ss_pred CCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCe
Confidence 4688885443 343 44478999999999999999999999999999999999988888887777655322 4799
Q ss_pred EEEEeeCCCCCCCCC-----HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALS-----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+.+... ..++...++.. .++++||++|+|++++|+.+++.+.
T Consensus 111 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 111 CLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccCccHHHHHHHHHHHhh
Confidence 999999999964432 23444444321 2689999999999999999998775
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=120.33 Aligned_cols=133 Identities=29% Similarity=0.530 Sum_probs=120.5
Q ss_pred CCcccceeeEEEeCC-EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 2 IPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~-~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.||-|||..++.+++ +++++||.+|+...+..|..|+...|++|+|+|++|...++++...+-+++........|+.++
T Consensus 46 tpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIf 125 (185)
T KOG0074|consen 46 TPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIF 125 (185)
T ss_pred cccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeeh
Confidence 589999999998766 9999999999999999999999999999999999998889988888888888777789999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+||.|+...-..+++...++......+.|++.+|||.+++|+.+..+|+.....
T Consensus 126 ankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 126 ANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred hhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCCC
Confidence 999999887778888888887777788999999999999999999999886554
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=127.51 Aligned_cols=128 Identities=19% Similarity=0.286 Sum_probs=98.8
Q ss_pred CCcccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. . +....+.+++|||+|++.+..++..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 36 ~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~pi 114 (210)
T PLN03108 36 DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTI 114 (210)
T ss_pred CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 467775543 2 33445789999999999999999999999999999999999999999888888775442 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+.....+ ..++.++++||++++|++++|.++++.+.+
T Consensus 115 iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 115 MLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred EEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999976432 222222221 113469999999999999999999987753
|
|
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=126.85 Aligned_cols=129 Identities=20% Similarity=0.346 Sum_probs=95.7
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p 76 (137)
.||+|..+. .+. .+.+.+.+|||||++++..++..+++.+|++++|+|+++.++++.+.. |...+.......+.|
T Consensus 43 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~ 122 (211)
T PLN03118 43 APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV 122 (211)
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 577775443 333 345789999999999999999999999999999999999999988875 444443332335689
Q ss_pred EEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+...... ........ ..++.++++||++|+|++++|++|.+.+.+
T Consensus 123 ~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 123 KMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred EEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999998654332 21111111 123469999999999999999999987753
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=126.62 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=97.7
Q ss_pred CCccc-ceeeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVG-FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~-~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++ .....+..++ +.+++||+||+..+..++..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 108 (198)
T cd04147 29 RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV 108 (198)
T ss_pred CCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 35554 3333344444 78999999999999999999999999999999999999999998888888776555679999
Q ss_pred EEeeCCCCCCC-CCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEA-LSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+... ... ......... ..+..++++||++|.|++++|+++++.+.
T Consensus 109 lv~NK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 109 VVGNKADSLEEERQVPAKDALSTVEL----DWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEEEccccccccccccHHHHHHHHHh----hcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 99999998653 211 112211110 11235899999999999999999998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=121.77 Aligned_cols=126 Identities=25% Similarity=0.421 Sum_probs=98.4
Q ss_pred CCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++.. +. ...+.+.+|||||++.+...+..+++.+|++++|+|+++..+++....|+..+.......+.|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (161)
T cd01863 30 AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVK 109 (161)
T ss_pred CCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcE
Confidence 4677754432 33 3458899999999999999999999999999999999999999998889888877655678999
Q ss_pred EEEeeCCCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 78 LVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 78 ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
++++||+|+.... ...+....... .+++++++||++|+|++++++++.+.
T Consensus 110 ~iv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 110 MLVGNKIDKENREVTREEGLKFARK-----HNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEEECCcccccccCHHHHHHHHHH-----cCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999997332 22222221111 24569999999999999999999875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=123.52 Aligned_cols=125 Identities=28% Similarity=0.532 Sum_probs=101.9
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|..... +. ...+.+.+||++|++++..+...+++++|++++|||.++..+++.+..|+..+..... .++|
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~ 106 (162)
T PF00071_consen 28 YIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIP 106 (162)
T ss_dssp SETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45788755543 33 3458899999999999999999999999999999999999999999999999877643 4689
Q ss_pred EEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++++||.|+..... .. ++...++ ..++++||+++.|+.++|..+++.+.
T Consensus 107 iivvg~K~D~~~~~~v~~~~~~~~~~~~~--------~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 107 IIVVGNKSDLSDEREVSVEEAQEFAKELG--------VPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEEEETTTGGGGSSSCHHHHHHHHHHTT--------SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ceeeeccccccccccchhhHHHHHHHHhC--------CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999976332 22 2333333 46999999999999999999998875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=120.20 Aligned_cols=128 Identities=22% Similarity=0.406 Sum_probs=99.2
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..+ .+.+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .++|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pi 108 (164)
T smart00175 30 KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVI 108 (164)
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeE
Confidence 356664433 34443 37899999999999999999999999999999999999999998889888876543 58999
Q ss_pred EEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.... .......... ..++.++++||++|.|++++++++.+.+.+
T Consensus 109 vvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 109 MLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred EEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999987633 2222222111 113469999999999999999999998764
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=127.62 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=93.3
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS 68 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~ 68 (137)
+.||++.++. .+. +..+.+.+|||||...+. ......++.+|++++|||++++++++.+..|...+..
T Consensus 29 ~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~ 108 (198)
T cd04142 29 YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILE 108 (198)
T ss_pred cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3577774432 333 334789999999975432 1133457899999999999999999999888888776
Q ss_pred CC--CCCCCcEEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 69 KP--SLNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 69 ~~--~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.. ...++|+++++||+|+...+.. .+....+.. ...++.++++||++|.|++++|+.+++.+..
T Consensus 109 ~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 109 TRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR---KSWKCGYLECSAKYNWHILLLFKELLISATT 175 (198)
T ss_pred hcccCCCCCCEEEEEECccccccccccHHHHHHHHH---HhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 43 2467999999999999654322 111221110 0124569999999999999999999987653
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=119.63 Aligned_cols=126 Identities=22% Similarity=0.354 Sum_probs=96.1
Q ss_pred CCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||.+..+ ..+..+ .+++++|||||++++..++..+++.++++++|+|++++++++.+..|+..+..... .+.|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i 108 (161)
T cd01861 30 QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVII 108 (161)
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEE
Confidence 45666433 234333 36799999999999999999999999999999999999999999999988866432 36999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+..... ..+.....+. .++.++++||++++|++++++++++.+
T Consensus 109 ilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 109 VLVGNKTDLSDKRQVSTEEGEKKAKE-----LNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred EEEEEChhccccCccCHHHHHHHHHH-----hCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 99999999954322 2222222111 135699999999999999999998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=121.62 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=98.1
Q ss_pred CCccccee--eEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||.|..+ ..+. .....+.+||+||++++...+..+++.+|++++|+|++++++++....|+..+..... .+.|+
T Consensus 31 ~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~i 109 (163)
T cd01860 31 ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIII 109 (163)
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeE
Confidence 46777433 2333 3457899999999999999999999999999999999999999999999888876543 67999
Q ss_pred EEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+.... ............ .+.++++||++|.|++++|+++++.+
T Consensus 110 ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 110 ALVGNKADLESKRQVSTEEAQEYADEN-----GLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEECccccccCcCCHHHHHHHHHHc-----CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999987432 222222222211 24699999999999999999998865
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=120.77 Aligned_cols=130 Identities=25% Similarity=0.406 Sum_probs=97.5
Q ss_pred Ccccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC---CCCC
Q 032598 3 PTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS---LNGI 75 (137)
Q Consensus 3 pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~ 75 (137)
||++..+. .+. ...+.+++||+||++.+..++..+++.+|++++|+|++++.+++....|...+..... ..++
T Consensus 31 ~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (172)
T cd01862 31 ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENF 110 (172)
T ss_pred CccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 56664432 233 3457788999999999999999999999999999999998888888788776655432 3479
Q ss_pred cEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 76 PLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 76 p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
|+++++||+|+.... ........... .....++++||++|.|++++|+++.+.+.++
T Consensus 111 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 111 PFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred eEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999999997422 23332222221 1124699999999999999999999887653
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=116.57 Aligned_cols=125 Identities=20% Similarity=0.307 Sum_probs=100.1
Q ss_pred cccceee----EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 4 TVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 4 t~~~~~~----~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
|+|..+. .+.+.++++++|||+|++++++..+.|++++.+.++|+|++...++..+..|+....... .++..+++
T Consensus 43 tigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~l 121 (215)
T KOG0097|consen 43 TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFL 121 (215)
T ss_pred ccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEE
Confidence 5664443 356778999999999999999999999999999999999999888998999998886553 37788899
Q ss_pred EeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 80 LGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 80 v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++||.|+...+.+. +-...+.. ..+..|+++||++|+|+++.|-..+..+
T Consensus 122 ignkadle~qrdv~yeeak~fae----engl~fle~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 122 IGNKADLESQRDVTYEEAKEFAE----ENGLMFLEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred ecchhhhhhcccCcHHHHHHHHh----hcCeEEEEecccccCcHHHHHHHHHHHH
Confidence 99999998776542 22222221 2345699999999999999998777655
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-21 Score=119.98 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=94.3
Q ss_pred EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--
Q 032598 13 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-- 90 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-- 90 (137)
+.+.+.+.+|||||+..+...+..+++.++++++|+|.+++.++.....|...+.......++|+++++||+|+.+..
T Consensus 44 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~ 123 (164)
T cd04139 44 DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV 123 (164)
T ss_pred CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc
Confidence 345688999999999999999999999999999999999998998888888888776445679999999999997622
Q ss_pred CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 91 SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 91 ~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
... .....++ .+++++||++|+|++++|+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 124 SSEEAANLARQWG--------VPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred CHHHHHHHHHHhC--------CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 222 2222222 359999999999999999999988754
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=122.00 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=88.6
Q ss_pred EEeCCEEEEEEecCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~ 89 (137)
++++.+.+++|||||++. .......+++.+|++++|+|+++..+++.+..|...+..... ..++|+++++||+|+...
T Consensus 42 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 42 IDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred ECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 344557899999999985 345567789999999999999999999998888877765432 357999999999998644
Q ss_pred CCH--H---HHHHHhCCCCCCCCceeEEEeecccCC-ChHHHHHHHHHhhh
Q 032598 90 LSK--E---DLMEQMGLKSITDREVCCYMISCKNST-NIDTVIDWLVKHSK 134 (137)
Q Consensus 90 ~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~ 134 (137)
... . .+...+ ++.++++||++|. |++++|.++++.+.
T Consensus 122 ~~v~~~~~~~~~~~~--------~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 122 RQVSTEEGEKLASEL--------GCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CccCHHHHHHHHHHc--------CCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 322 1 222222 2369999999994 99999999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=122.75 Aligned_cols=131 Identities=17% Similarity=0.231 Sum_probs=93.7
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. .+.+++.+|||+|++.+...+..+++++|++++|+|+++.++++.+. .|...+.+. ..++|
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~p 107 (175)
T cd01870 30 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVP 107 (175)
T ss_pred CCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCC
Confidence 4677775543 333 34578999999999999988888899999999999999998888875 466666543 25789
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++++||+|+.......+.......... ......+++|||++|.|++++|+++++.+
T Consensus 108 iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 108 IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 9999999998643221111110000000 01134699999999999999999999765
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=123.48 Aligned_cols=127 Identities=16% Similarity=0.109 Sum_probs=93.1
Q ss_pred CCccc--ceeeEE--EeCCEEEEEEecCCccccHHhHHHHhc-cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVG--FNMRKV--TKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~--~~~~~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++ +....+ +.+...+.+|||+|++ ......+++ .+|++++|||+++..+++....|+..+.......++|
T Consensus 31 ~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p 108 (221)
T cd04148 31 DASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP 108 (221)
T ss_pred CCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 45554 333333 3456889999999998 333455667 8999999999999999998888888887654446799
Q ss_pred EEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++|+||+|+....... +....+.. ..++.++++||++|.|++++|+++++.+.
T Consensus 109 iilV~NK~Dl~~~~~v~~~~~~~~a~----~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 109 IILVGNKSDLARSREVSVQEGRACAV----VFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred EEEEEEChhccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999996544321 11112211 12346999999999999999999998885
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-21 Score=120.98 Aligned_cols=130 Identities=17% Similarity=0.211 Sum_probs=92.3
Q ss_pred CCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|.++..+++.+. .|...+... ..++|+
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~pi 107 (174)
T cd04135 30 VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPY 107 (174)
T ss_pred CCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCE
Confidence 566653332 233 33467899999999999999999999999999999999999998876 466666543 468999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+.+..........+..... ......++++||++|.|++++|+.+++.+
T Consensus 108 ivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 108 LLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 999999998643221111111100000 01123589999999999999999999875
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=121.41 Aligned_cols=113 Identities=12% Similarity=0.152 Sum_probs=85.2
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALS- 91 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~- 91 (137)
...+++++|||||++++...+..+++++|++++|+|++++.+++.+. .|+..+... .+++|+++++||+|+.....
T Consensus 45 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~ 122 (173)
T cd04130 45 GKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNV 122 (173)
T ss_pred CEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhH
Confidence 33578899999999999999999999999999999999999998875 577766543 25699999999999864321
Q ss_pred -----------H-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 92 -----------K-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 92 -----------~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+ .+....+.. ....+.++++||++|.|++++|+.+.-
T Consensus 123 ~~~~~~~~~~~v~~~~~~~~a~---~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 123 LIQLARYGEKPVSQSRAKALAE---KIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred HHHHhhcCCCCcCHHHHHHHHH---HhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 0 001111110 011236999999999999999998864
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-21 Score=122.39 Aligned_cols=126 Identities=17% Similarity=0.287 Sum_probs=102.3
Q ss_pred CCCcccceeeE---EE-eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCC
Q 032598 1 MIPTVGFNMRK---VT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~~---~~-~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (137)
|+||+..|+.. ++ +..+++.+|||+||+.|..+++..+.++|.++++|++.++.|++.+. +|+.++... .++.
T Consensus 33 yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--cp~v 110 (198)
T KOG0393|consen 33 YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--CPNV 110 (198)
T ss_pred ccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--CCCC
Confidence 68999977753 53 66799999999999999998888899999999999999999999855 799988765 3789
Q ss_pred cEEEEeeCCCCCCCCCH-----------------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPEALSK-----------------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++||+|.|+...... ..+...++. ..|++|||++..|++++|+..++.+..
T Consensus 111 piiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-------~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 111 PIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA-------VKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred CEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc-------ceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 99999999999843211 122333332 469999999999999999999987753
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=116.43 Aligned_cols=113 Identities=24% Similarity=0.368 Sum_probs=90.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--H
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 92 (137)
..+.+.+||+||++.+..++..+++.+|++++|+|+++.++++....|+..+..... .++|+++++||+|+..... .
T Consensus 47 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~ 125 (162)
T cd04123 47 KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSK 125 (162)
T ss_pred EEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCH
Confidence 446899999999999999999999999999999999999999988888888866543 3799999999999875432 2
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..+...... .++.++++||++|+|++++++++.+.+
T Consensus 126 ~~~~~~~~~-----~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 126 SEAEEYAKS-----VGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 222222211 134589999999999999999998765
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=114.66 Aligned_cols=113 Identities=23% Similarity=0.362 Sum_probs=89.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-ED 94 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~ 94 (137)
.+.+.+||+||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ..+.|+++++||+|+...... ..
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~ 133 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQ 133 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHH
Confidence 4779999999999999999999999999999999999888888888887765432 256999999999998754432 22
Q ss_pred HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 95 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
....+... ..+.++++||++|+|++++|+++++.+
T Consensus 134 ~~~~~~~~----~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 134 RAEEFSDA----QDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHH----cCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 22222211 124689999999999999999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=114.05 Aligned_cols=124 Identities=24% Similarity=0.449 Sum_probs=96.6
Q ss_pred CCcccceeeE--EEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||.+.++.. +.. ....+.+||+||++.+...+..+++++|++++|+|++++++++.+..|+..+..... .++|+
T Consensus 30 ~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 108 (159)
T cd00154 30 KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPI 108 (159)
T ss_pred CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcE
Confidence 4677755543 332 458899999999999999999999999999999999998889998899888876532 57999
Q ss_pred EEEeeCCCCC--CCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 78 LVLGNKIDKP--EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 78 ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
++++||+|+. ......+....... ...+++++||+++.|+++++++|.+
T Consensus 109 ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 109 ILVGNKIDLEDQRQVSTEEAQQFAKE-----NGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EEEEEcccccccccccHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999995 22233333332221 2456999999999999999999863
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=118.95 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=89.7
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
+...++++.+|||||++.+...+..+++.+|++++|+|++++.+++.+. .|...+.... .++|+++++||+|+.+..
T Consensus 42 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 42 VTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGS 119 (166)
T ss_pred ecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccc
Confidence 3346789999999999988888888899999999999999999998875 5666564432 479999999999997654
Q ss_pred CHH---H----HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 91 SKE---D----LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 91 ~~~---~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
... + +...+.. -..++++||++|.|++++|+.+.+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 120 SQAGLEEEMLPIMNEFRE------IETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred chhHHHHHHHHHHHHHhc------ccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 421 1 1112211 1258999999999999999999988763
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-20 Score=119.79 Aligned_cols=128 Identities=21% Similarity=0.410 Sum_probs=101.0
Q ss_pred CCCcccceeeEE----EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~----~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++.++... +.+++.+.+|||+|++++...+..++++++++++|+|+++..++..+..|+..+... ..++|
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~ 115 (215)
T PTZ00132 38 YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIP 115 (215)
T ss_pred CCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCC
Confidence 468888766553 345699999999999999999999999999999999999999999988888887654 25689
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.......+...... ...+.++++||++|.|+++.|.++++.+..
T Consensus 116 i~lv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 116 IVLVGNKVDVKDRQVKARQITFHR-----KKNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred EEEEEECccCccccCCHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999864322222222111 123468999999999999999999988764
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=115.45 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=84.7
Q ss_pred EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-
Q 032598 13 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS- 91 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~- 91 (137)
+.+++.+++|||||++++...+..+++.+|++++|+|+++..+.+....|.... ..++|+++++||+|+.+...
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~~~~ 137 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSADPE 137 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcCCHH
Confidence 345788999999999999999999999999999999999876655554443322 14689999999999865322
Q ss_pred --HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 92 --KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..++.+.++.. ...++++||++|+|++++|+++.+.+
T Consensus 138 ~~~~~~~~~~~~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 138 RVKQQIEDVLGLD-----PSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHhCCC-----cccEEEeeccCCCCHHHHHHHHHhhC
Confidence 12344444321 13489999999999999999998765
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-20 Score=116.71 Aligned_cols=129 Identities=15% Similarity=0.277 Sum_probs=98.3
Q ss_pred CCcccce-eeEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFN-MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~-~~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++.. ...+... ++.+.+|||||++++...+..++..++++++|+|+++..+++.+..++..+.......+.|++
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 110 (180)
T cd04137 31 YPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV 110 (180)
T ss_pred CcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 3555532 3334333 467899999999999999999999999999999999999999998888888776545678999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+..... ......... ..++.++++||++++|+.+++.++.+.+.+
T Consensus 111 lv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 111 LVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred EEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999864322 112111111 112468999999999999999999988764
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-19 Score=109.92 Aligned_cols=113 Identities=24% Similarity=0.313 Sum_probs=91.0
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 93 (137)
.+.+++||+||++.+...+..+++.+|++++|+|+++++++.....+...+........+|+++++||+|+..... ..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 125 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKE 125 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHH
Confidence 5789999999999999999999999999999999999999988888888887664446899999999999876322 22
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
......... ..+++++||+++.|+++++++|.+.+
T Consensus 126 ~~~~~~~~~-----~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 126 EGKALAKEW-----GCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHc-----CCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 222222211 14599999999999999999998753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=110.15 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=82.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccH---------HhHHHHhccCCEEEEEEeCCCCCCh--HHHHHHHHHHhcCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFR---------SMWERYCRAVSAIVYVVDAADYDNL--PVSRSELHDLLSKPSL 72 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~---------~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~ 72 (137)
|.+.+...+..++..+++|||||+.... .........+|++++|+|+++..++ +....|+..+... .
T Consensus 34 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~ 111 (168)
T cd01897 34 TKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--F 111 (168)
T ss_pred ccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh--c
Confidence 4445555556667899999999984210 1111112236899999999986543 5455566666432 2
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++|+++++||+|+......... ..+. ....++++++||++|+|++++++++.+.+
T Consensus 112 ~~~pvilv~NK~Dl~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 112 KNKPVIVVLNKIDLLTFEDLSEI-EEEE----ELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CcCCeEEEEEccccCchhhHHHH-HHhh----hhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 47999999999999765443331 1211 12345699999999999999999999876
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=115.84 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=92.1
Q ss_pred CCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. .+ +.....+.+|||+|++.+......+++.++++++++|+++.++++.+. .|+..+.+. ..++|+
T Consensus 31 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~pi 108 (187)
T cd04129 31 HPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVPV 108 (187)
T ss_pred CCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 355554433 22 233467899999999988877777889999999999999999998886 588777653 246999
Q ss_pred EEEeeCCCCCCCCC------------H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS------------K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+..... . ..+...++ .+.+++|||++|+|++++|+++++.+..
T Consensus 109 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 109 ILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG-------AKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC-------CcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999854211 0 11222222 2359999999999999999999987653
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=113.69 Aligned_cols=90 Identities=28% Similarity=0.377 Sum_probs=74.4
Q ss_pred CCCcccceee--EEEe-------CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-
Q 032598 1 MIPTVGFNMR--KVTK-------GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~-------~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~- 70 (137)
+.||+|.++. .+.. +.+.+++|||+|++++..++..++++++++++|||+++..+++.+..|+..+....
T Consensus 29 ~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~ 108 (202)
T cd04102 29 PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDT 108 (202)
T ss_pred CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhc
Confidence 4688885443 3332 45889999999999999999999999999999999999999999999999886531
Q ss_pred -----------------CCCCCcEEEEeeCCCCCCCC
Q 032598 71 -----------------SLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 71 -----------------~~~~~p~ivv~nK~D~~~~~ 90 (137)
...++|+++|+||+|+.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 109 FPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred cccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 12468999999999997653
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-19 Score=113.43 Aligned_cols=112 Identities=12% Similarity=0.198 Sum_probs=84.9
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
+..+.+++|||||++.+......+++.+|++++|+|+++..++..... |+..+... ..++|+++++||+|+......
T Consensus 45 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~ 122 (171)
T cd00157 45 GKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENT 122 (171)
T ss_pred CEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhh
Confidence 456789999999999888888888999999999999999888877554 55555443 247999999999998765432
Q ss_pred H-------------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 93 E-------------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 93 ~-------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
. ...+.... .....++++||++|+|+++++.++.+
T Consensus 123 ~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 123 LKKLEKGKEPITPEEGEKLAKE----IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhcccCCCccCHHHHHHHHHH----hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 1 11111111 11226999999999999999999876
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=109.57 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=80.9
Q ss_pred cccceeeEEEeC-CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 4 TVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 4 t~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
|++..+..+... +..+++|||||++++......+++.+|++++|+|+++.... +....+..+ ... ...|+++++|
T Consensus 37 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~-~~~~~~~~~-~~~--~~~~~ilv~N 112 (164)
T cd04171 37 TIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMP-QTREHLEIL-ELL--GIKRGLVVLT 112 (164)
T ss_pred eEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccH-hHHHHHHHH-HHh--CCCcEEEEEE
Confidence 334444444444 77999999999999987777788999999999999873211 111222211 111 2248999999
Q ss_pred CCCCCCCCC----HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 83 KIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 83 K~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
|+|+.+... ..++.+.++.. .....+++++||++|+|++++++.+.+
T Consensus 113 K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 113 KADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 999975421 12333333321 012456999999999999999998864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=109.02 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=84.2
Q ss_pred eeEEEeCCE-EEEEEecCCcc----ccHHhHHHH---hccCCEEEEEEeCCCC-CChHHHHHHHHHHhcCC-CCCCCcEE
Q 032598 9 MRKVTKGNV-TIKLWDLGGQP----RFRSMWERY---CRAVSAIVYVVDAADY-DNLPVSRSELHDLLSKP-SLNGIPLL 78 (137)
Q Consensus 9 ~~~~~~~~~-~~~~~Dt~g~~----~~~~~~~~~---~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~i 78 (137)
...+..++. .+.+|||||.. ..+.+...+ ++.+|++++|+|+++. .+++....|.+.+.... ...++|++
T Consensus 39 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~i 118 (170)
T cd01898 39 LGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI 118 (170)
T ss_pred ceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccE
Confidence 334444554 99999999963 222233333 4569999999999998 78888777777765432 12478999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++||+|+.+..........+... ....+++++||+++.|++++|+++.+.
T Consensus 119 vv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 119 VVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 999999997654443332222111 023468999999999999999999865
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=116.40 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=91.9
Q ss_pred CcccceeeEEEe-CCEEEEEEecCCccc-------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCC
Q 032598 3 PTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLN 73 (137)
Q Consensus 3 pt~~~~~~~~~~-~~~~~~~~Dt~g~~~-------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~ 73 (137)
+|+..+...+.. +..++.+||+||... ....+..+++.++++++|+|+++.++++....|..++.... ...
T Consensus 191 TT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~ 270 (335)
T PRK12299 191 TTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELA 270 (335)
T ss_pred ceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 455566666665 567899999999742 22233334667999999999998878888888888776542 235
Q ss_pred CCcEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++++||+|+.+..... .....+. ....++++++||++++|+++++++|.+.+.+
T Consensus 271 ~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 271 DKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred cCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 78999999999997544322 1122111 0112468999999999999999999988764
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=103.72 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=81.6
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--H
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--E 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 93 (137)
+..+.+|||||++.+...+..+++.+|++++|+|+++....+. ...+..+. ..++|+++++||+|+...... .
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~ 123 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQT-IEAIKLAK----AANVPFIVALNKIDKPNANPERVK 123 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHH-HHHHHHHH----HcCCCEEEEEEceecccccHHHHH
Confidence 6899999999999999999989999999999999988543222 12222222 156899999999998754221 1
Q ss_pred HHHHHhCCCC--CCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 94 DLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.....+.... .....++++++||++|+|+++++++|.+..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (168)
T cd01887 124 NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAEK 167 (168)
T ss_pred HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhhc
Confidence 1122221111 11234679999999999999999999987653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=101.91 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=90.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+...+..+.+|||||+..+...+..+++.+|++++|+|+++..+.... .++..+.. .++|+++++||+|+
T Consensus 52 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~i~iv~nK~D~ 126 (189)
T cd00881 52 SGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE----GGLPIIVAINKIDR 126 (189)
T ss_pred cceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH----CCCCeEEEEECCCC
Confidence 34445666788999999999999999999999999999999999876543322 23333322 57999999999999
Q ss_pred CCCCCH----HHHHHHhCCCCC---------CCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 87 PEALSK----EDLMEQMGLKSI---------TDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 87 ~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...... ..+...++.... .....+++++||++|.|+++++.++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 127 VGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 764332 233333432211 124567999999999999999999998764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-17 Score=100.85 Aligned_cols=116 Identities=25% Similarity=0.277 Sum_probs=82.4
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHH------hHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
|+......+..++..+.+|||||+..+.. ++..++. .+|++++|+|+++..... .+...+.. .++
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~----~~~ 102 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE----LGL 102 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH----cCC
Confidence 33455556667778999999999876553 3566665 899999999998754322 33333332 368
Q ss_pred cEEEEeeCCCCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 76 PLLVLGNKIDKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+++++||+|+...... ..+...+ +.+++++||.+|+|++++++++.+.+.
T Consensus 103 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~iSa~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 103 PVVVALNMIDEAEKRGIKIDLDKLSELL--------GVPVVPTSARKGEGIDELKDAIAELAE 157 (158)
T ss_pred CEEEEEehhhhcccccchhhHHHHHHhh--------CCCeEEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999754322 2222222 235999999999999999999988653
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-17 Score=112.65 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=88.5
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCcccc----HHhHH---HHhccCCEEEEEEeCCCC---CChHHHHHHHHHHhcCC-
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPRF----RSMWE---RYCRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~~----~~~~~---~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~- 70 (137)
+|...+...+...+ .++++|||||.... ..+.. ..++.++++++|+|+++. ++++....|..++....
T Consensus 190 TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~ 269 (329)
T TIGR02729 190 TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP 269 (329)
T ss_pred CccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh
Confidence 34445555566555 89999999997422 12233 335679999999999976 56677766766665432
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...++|+++++||+|+.+.....++.+.+... ...+++++||++++|+++++++|.+.+
T Consensus 270 ~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 270 ELAEKPRIVVLNKIDLLDEEELAELLKELKKA----LGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred hhccCCEEEEEeCccCCChHHHHHHHHHHHHH----cCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 23578999999999997654444444433211 124689999999999999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=104.94 Aligned_cols=127 Identities=24% Similarity=0.189 Sum_probs=86.5
Q ss_pred CcccceeeEEEeC-CEEEEEEecCCccc----cHH---hHHHHhccCCEEEEEEeCCCC------CChHHHHHHHHHHhc
Q 032598 3 PTVGFNMRKVTKG-NVTIKLWDLGGQPR----FRS---MWERYCRAVSAIVYVVDAADY------DNLPVSRSELHDLLS 68 (137)
Q Consensus 3 pt~~~~~~~~~~~-~~~~~~~Dt~g~~~----~~~---~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~ 68 (137)
+|.+.+...+..+ +..+.+|||||... .+. .....++.+|++++|+|+++. .+++....+...+..
T Consensus 29 ~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (176)
T cd01881 29 TTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKL 108 (176)
T ss_pred eeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHH
Confidence 3455555566666 88999999999732 112 223457789999999999987 456666666666654
Q ss_pred CCC------CCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 69 KPS------LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 69 ~~~------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
... ..++|+++++||+|+............. ........++++||++++|++++++++.+.
T Consensus 109 ~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 109 YDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 322 2479999999999997654433321001 111224469999999999999999999764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.3e-17 Score=104.82 Aligned_cols=121 Identities=23% Similarity=0.237 Sum_probs=82.1
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCccc---------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPR---------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL 72 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 72 (137)
||+......+...+ ..+.+|||||... +...+ ..+..+|++++|+|++++.+......+.+.+... ..
T Consensus 74 ~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~ 151 (204)
T cd01878 74 ATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA 151 (204)
T ss_pred eeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc
Confidence 44444444454434 4899999999732 22221 2366899999999999987777665555544332 33
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++|+++|+||+|+.+..... .... ....+++++||++|.|+++++++|...+
T Consensus 152 ~~~~viiV~NK~Dl~~~~~~~---~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 152 EDIPMILVLNKIDLLDDEELE---ERLE-----AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCEEEEEEccccCChHHHH---HHhh-----cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 568999999999996543322 1111 1234589999999999999999998753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-17 Score=104.28 Aligned_cols=108 Identities=25% Similarity=0.310 Sum_probs=75.7
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+..++.++++|||||++++...+..+++.+|++++|+|+++.. ......++..+.. .++|+++++||+|+....
T Consensus 59 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 59 AVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 46778899999999999999999999999999999999998742 2222333333322 468999999999996543
Q ss_pred CH---HHHHHHhCCCC--CCCCceeEEEeecccCCChH
Q 032598 91 SK---EDLMEQMGLKS--ITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 91 ~~---~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~ 123 (137)
.. .++...+.... .....++++++||++|.|+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 21 22223221111 11225679999999998763
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=118.22 Aligned_cols=109 Identities=24% Similarity=0.289 Sum_probs=83.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
.+++++|||||+.++...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+......
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~~~~~~ 143 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSADPERVK 143 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccCHHHHH
Confidence 4899999999999999999999999999999999998766655544443331 46899999999998653221
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++.. ...++++||++|.|++++|++|.+.+-
T Consensus 144 ~el~~~lg~~-----~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 144 KEIEEVIGLD-----ASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHHhCCC-----cceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 2344444321 124899999999999999999988653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=98.99 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=79.2
Q ss_pred eeeEEEeCCEEEEEEecCCccccHH--------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.......++..+.+|||||...+.. .....++.+|++++|+|+.+..+.... ++....+. .+.|+++
T Consensus 36 ~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~---~~~piii 110 (157)
T cd01894 36 IYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRK---SKKPVIL 110 (157)
T ss_pred eeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHh---cCCCEEE
Confidence 3445566778999999999977543 344567889999999999875443322 22222222 3599999
Q ss_pred EeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 80 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 80 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++||+|+.+..........++. .+++++||++|+|++++++++++.+
T Consensus 111 v~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 111 VVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHHHHHHHHhhC
Confidence 9999999765433222222221 1479999999999999999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=111.85 Aligned_cols=120 Identities=22% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCcccceeeEEEe-CCEEEEEEecCCcc---------ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTK-GNVTIKLWDLGGQP---------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~-~~~~~~~~Dt~g~~---------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 71 (137)
.+|.....+.+.. ++..+.+|||+|.. .+++.+ ..++.||++++|+|++++.+.+....|...+ ....
T Consensus 221 ~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~ 298 (351)
T TIGR03156 221 FATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVL-EELG 298 (351)
T ss_pred ccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHH-HHhc
Confidence 3566666666665 56899999999972 233332 2478899999999999987776654443333 2222
Q ss_pred CCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 72 LNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
..++|+++|+||+|+........ .... ..+++++||++|+|+++++++|.+.
T Consensus 299 ~~~~piIlV~NK~Dl~~~~~v~~---~~~~------~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 299 AEDIPQLLVYNKIDLLDEPRIER---LEEG------YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCCCEEEEEEeecCCChHhHHH---HHhC------CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 35789999999999965322211 1110 1247999999999999999999865
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=103.71 Aligned_cols=113 Identities=17% Similarity=0.079 Sum_probs=75.3
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
+..+.+|||||+..+........+.+|++++|+|+++.........+. +... .++|+++++||+|+......
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~ 141 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERK 141 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHH
Confidence 789999999999765444444456789999999998754433322221 1111 35799999999998643322
Q ss_pred -HHHHHHhCCC--CCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 -EDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 -~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++.+.++.. ......++++++||++|+|++++++++.+.+
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 142 IEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2222221100 0112346799999999999999999998875
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=106.34 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=77.0
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
.++.+|||||++++...+...+..+|++++|+|++++....+....+..+... ...|+++++||+|+.......
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence 78999999999998888888888999999999998742111112222222111 225789999999997532221
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.+...+.. .....++++++||++|+|++++++++.+.+.
T Consensus 160 ~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 160 EQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 22222221 1112456999999999999999999988664
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-17 Score=99.34 Aligned_cols=112 Identities=29% Similarity=0.502 Sum_probs=85.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 95 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 95 (137)
+..+.+||+||+..+...+..+++.+|++++|+|++++.+......+...........++|+++++||+|+.........
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~ 123 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE 123 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH
Confidence 78899999999998888888899999999999999998777776666333333334578999999999999765443322
Q ss_pred H--HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 96 M--EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 96 ~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
. .... ....++++++|++.+.|+++++++|.+
T Consensus 124 ~~~~~~~----~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 124 ELAEQLA----KELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred HHHHHHH----hhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 1 1111 122457999999999999999999863
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-16 Score=99.50 Aligned_cols=124 Identities=26% Similarity=0.259 Sum_probs=88.2
Q ss_pred ccceeeEEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 5 VGFNMRKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 5 ~~~~~~~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+......+. ..+..++++||||+..+.......++.+|++++|+|+.+.-... ....+..+.. .++|+++++|
T Consensus 56 i~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlN 130 (188)
T PF00009_consen 56 IDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLN 130 (188)
T ss_dssp SSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEE
T ss_pred cccccccccccccccceeecccccccceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeee
Confidence 344555666 78899999999999999998889999999999999998764332 2233333322 5788999999
Q ss_pred CCCCCCCCC---HHHHHHHh-CCCCCCC-CceeEEEeecccCCChHHHHHHHHHhh
Q 032598 83 KIDKPEALS---KEDLMEQM-GLKSITD-REVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 83 K~D~~~~~~---~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
|+|+....- ..++...+ +...... ..++++++||++|.|+++|++.|.+.+
T Consensus 131 K~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 131 KMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred eccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 999973211 12222222 1111222 357899999999999999999998765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.1e-17 Score=110.94 Aligned_cols=89 Identities=18% Similarity=0.396 Sum_probs=74.0
Q ss_pred CCCccccee--eEEEe---------------CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHH
Q 032598 1 MIPTVGFNM--RKVTK---------------GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL 63 (137)
Q Consensus 1 ~~pt~~~~~--~~~~~---------------~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 63 (137)
+.||+|..+ ..+.. ..+.+++|||+|+++++.++..++++++++|+|||+++..+++.+..|+
T Consensus 50 ~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl 129 (334)
T PLN00023 50 PPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWA 129 (334)
T ss_pred cCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 468998655 33332 3478999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC-----------CCCCcEEEEeeCCCCCCC
Q 032598 64 HDLLSKPS-----------LNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 64 ~~~~~~~~-----------~~~~p~ivv~nK~D~~~~ 89 (137)
..+..... ..++|+++|+||+|+...
T Consensus 130 ~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 130 SEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred HHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 98876421 135899999999999654
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-16 Score=115.04 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=83.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-- 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-- 92 (137)
+++.+++|||||+.++...+..+++.+|++++|+|+++....+....|.... ..++|+++++||+|+......
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a~~~~v 146 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAADPERV 146 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCcccHHHH
Confidence 4689999999999999999999999999999999999865554444443322 146899999999998654321
Q ss_pred -HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 -EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++.. ...++++||++|.|+++++++|.+.+-
T Consensus 147 ~~ei~~~lg~~-----~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 147 KQEIEDVIGID-----ASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHhCCC-----cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2333333322 124899999999999999999987653
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-16 Score=112.94 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=81.1
Q ss_pred eEEEeCCEEEEEEecCCcc----------ccHHhH-HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 10 RKVTKGNVTIKLWDLGGQP----------RFRSMW-ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~----------~~~~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
..+..++..+.+|||||.. .+.... ..+++.+|++++|+|+++..+.+... ++..+.. .++|++
T Consensus 252 ~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piI 326 (472)
T PRK03003 252 SLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALV 326 (472)
T ss_pred EEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEE
Confidence 3455677889999999963 222222 23578999999999999987776653 3333322 578999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+.+.....................+++++||++|.|++++|+.+.+.+.
T Consensus 327 iV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 327 LAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999753322222222111011112346899999999999999999998764
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-16 Score=95.79 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=89.6
Q ss_pred CcccceeeE--EEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC-CChHHHH-HHHHHHhcCCCCCCCc
Q 032598 3 PTVGFNMRK--VTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY-DNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 3 pt~~~~~~~--~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
||++.++.. +..++ +.+.+||+||+..+...+..+.+++++++.++|.... .++.... .+...+...... +.|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p 110 (161)
T TIGR00231 32 PGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP 110 (161)
T ss_pred CCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc
Confidence 455544433 55556 8899999999999999999999999999999998876 5665544 555555554332 789
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
+++++||+|+............+... ....++++||+.|.|+++++++|.
T Consensus 111 ~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 111 IILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHHHHHhh
Confidence 99999999997644333333333321 123599999999999999999874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-16 Score=96.90 Aligned_cols=121 Identities=26% Similarity=0.386 Sum_probs=97.5
Q ss_pred cccceeeEEEeC-CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC-CcEEEEe
Q 032598 4 TVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG-IPLLVLG 81 (137)
Q Consensus 4 t~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~ 81 (137)
|+...+..+... +..+.+++||||++++-+|..+.+++.+.++++|.+.+..+.. ..+..++.. .+ +|+++++
T Consensus 54 Tva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a--~~ii~f~~~---~~~ip~vVa~ 128 (187)
T COG2229 54 TVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHA--EEIIDFLTS---RNPIPVVVAI 128 (187)
T ss_pred eEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHH--HHHHHHHhh---ccCCCEEEEe
Confidence 455666666544 4999999999999999999999999999999999999877622 222333333 33 9999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
||.|+....+.+.+.+.+.... ...+.++++|..+++..+.+..+...
T Consensus 129 NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 129 NKQDLFDALPPEKIREALKLEL---LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eccccCCCCCHHHHHHHHHhcc---CCCceeeeecccchhHHHHHHHHHhh
Confidence 9999999999988888887542 34569999999999999998888765
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.3e-16 Score=111.92 Aligned_cols=119 Identities=17% Similarity=0.127 Sum_probs=80.8
Q ss_pred EEEeCCEEEEEEecCCccccHHh-----------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSM-----------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.+..++..+.+|||||..+.... ...+++.+|++++|+|+++..+.++.. ++..+.. .++|+++
T Consensus 214 ~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iii 288 (429)
T TIGR03594 214 PFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVI 288 (429)
T ss_pred EEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEE
Confidence 34556778999999997554321 124578999999999999876655442 2222322 4689999
Q ss_pred EeeCCCCCC-CCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 80 LGNKIDKPE-ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 80 v~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++||+|+.+ .....++...+.........++++++||++|.|++++|+++.+...
T Consensus 289 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 289 VVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999972 2222333333321111123457999999999999999999988664
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-16 Score=111.64 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=78.8
Q ss_pred eEEEeCCEEEEEEecCCccc--------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 10 RKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
..+...+..+.+|||||.+. +...+..+++.+|++++|+|+++..+... ..+...+ . ..++|+++|+
T Consensus 79 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l-~---~~~~piilV~ 153 (472)
T PRK03003 79 YDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVL-R---RSGKPVILAA 153 (472)
T ss_pred EEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHH-H---HcCCCEEEEE
Confidence 34556678899999999762 34455667899999999999998765543 1232222 2 2579999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
||+|+...... ........ .. ..+++||++|.|++++|+++++.+.+
T Consensus 154 NK~Dl~~~~~~--~~~~~~~g-~~----~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 154 NKVDDERGEAD--AAALWSLG-LG----EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred ECccCCccchh--hHHHHhcC-CC----CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 99998643221 11211111 11 25799999999999999999987643
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=106.34 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=78.8
Q ss_pred eeeEEEeCCEEEEEEecCCccc-cHHhH-------HHHhccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPR-FRSMW-------ERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~-~~~~~-------~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~i 78 (137)
....+..++.++.+|||||... +..+. ...++.+|++++|+|..+ ++..... ++..+.. .+.|.+
T Consensus 91 ~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~I 164 (339)
T PRK15494 91 ITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPI 164 (339)
T ss_pred EEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEE
Confidence 3345667788999999999843 22211 124678999999999766 3444333 3333322 346778
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+... ...++...+... .....++++||++|.|++++++++.+.+.+
T Consensus 165 lViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 165 FLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred EEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 99999998653 333444443221 112468999999999999999999987653
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.2e-16 Score=100.14 Aligned_cols=114 Identities=27% Similarity=0.341 Sum_probs=74.3
Q ss_pred EEEEEecCC-----------ccccHHhHHHHhc----cCCEEEEEEeCCCCCChH---------HHHHHHHHHhcCCCCC
Q 032598 18 TIKLWDLGG-----------QPRFRSMWERYCR----AVSAIVYVVDAADYDNLP---------VSRSELHDLLSKPSLN 73 (137)
Q Consensus 18 ~~~~~Dt~g-----------~~~~~~~~~~~~~----~~~~~i~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~ 73 (137)
.+.+||||| +++++..+..+++ .++++++|+|+++...+. .....+..... ..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 129 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---EL 129 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---Hc
Confidence 689999999 5677777777764 357888999886532210 00111112222 24
Q ss_pred CCcEEEEeeCCCCCCCC--CHHHHHHHhCCCC-CCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEAL--SKEDLMEQMGLKS-ITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++++||+|+.+.. ...++.+.++... .......++++||++| |+++++++|.+.+.+
T Consensus 130 ~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 79999999999996543 2344555555311 1001125899999999 999999999988764
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=111.78 Aligned_cols=129 Identities=22% Similarity=0.231 Sum_probs=88.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccc----cHHh---HHHHhccCCEEEEEEeCCCC----CChHHHHHHHHHHhcCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPR----FRSM---WERYCRAVSAIVYVVDAADY----DNLPVSRSELHDLLSKP 70 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~----~~~~---~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~ 70 (137)
.+|+..+...++.++.++.+|||||... ...+ ...+++.++++++|+|+++. +++++...+..++....
T Consensus 191 fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~ 270 (500)
T PRK12296 191 FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA 270 (500)
T ss_pred cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence 3566677778888889999999999632 1122 22246779999999999863 34444444444443322
Q ss_pred ----------CCCCCcEEEEeeCCCCCCCCCHHH-HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 71 ----------SLNGIPLLVLGNKIDKPEALSKED-LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 71 ----------~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...+.|+++++||+|+.+.....+ +...+.. ..+.++++||++++|+++++.+|.+.+..
T Consensus 271 ~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~-----~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 271 PALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA-----RGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred hcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-----cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 235789999999999975433222 2222221 23569999999999999999999988764
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=111.31 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=81.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHh--------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSM--------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
+....+..++..+.+|||||.+..... ...+++.+|++++|+|++++.+.+....|.. ..++|++
T Consensus 253 ~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~pii 325 (449)
T PRK05291 253 VIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVI 325 (449)
T ss_pred cEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcE
Confidence 344556677889999999998654332 2235788999999999998877664433322 3578999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+....... . .....++++||++|+|+++++++|.+.+.
T Consensus 326 iV~NK~DL~~~~~~~------~-----~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 326 VVLNKADLTGEIDLE------E-----ENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred EEEEhhhccccchhh------h-----ccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 999999997543322 1 11335899999999999999999998764
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=108.05 Aligned_cols=125 Identities=21% Similarity=0.229 Sum_probs=86.4
Q ss_pred CcccceeeEEEeC-CEEEEEEecCCccc----cHHhHHHH---hccCCEEEEEEeCCCC---CChHHHHHHHHHHhcCC-
Q 032598 3 PTVGFNMRKVTKG-NVTIKLWDLGGQPR----FRSMWERY---CRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 3 pt~~~~~~~~~~~-~~~~~~~Dt~g~~~----~~~~~~~~---~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~- 70 (137)
+|...+...+... +.++.+||+||... ...+...+ ++.++++++|+|+++. +++++...|...+....
T Consensus 191 TTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~ 270 (424)
T PRK12297 191 TTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP 270 (424)
T ss_pred ceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch
Confidence 3444555556555 68899999999742 22233444 4569999999999865 56666666666665432
Q ss_pred CCCCCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...++|.++++||+|+..... ...+...+. ++++++||++++|+++++++|.+.+.+
T Consensus 271 ~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 271 RLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred hccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 235799999999999843211 122333332 358999999999999999999987754
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=99.71 Aligned_cols=117 Identities=27% Similarity=0.338 Sum_probs=86.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccC-CEEEEEEeCCCC-CChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAV-SAIVYVVDAADY-DNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~-~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+..+.+|||||+.+++..+..+++.+ +++|+|+|+++. .++.....++..++... ...++|+++++||+|+....
T Consensus 46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 468899999999999999999999998 999999999997 67777777766654432 22579999999999987665
Q ss_pred CHHHHHHHhC-----------C---------C---------------CCCCCceeEEEeecccCC-ChHHHHHHHHH
Q 032598 91 SKEDLMEQMG-----------L---------K---------------SITDREVCCYMISCKNST-NIDTVIDWLVK 131 (137)
Q Consensus 91 ~~~~~~~~~~-----------~---------~---------------~~~~~~~~~~~~Sa~~~~-~v~~~~~~i~~ 131 (137)
+...+...+. . . .....++.+.++|++.+. |++...+||.+
T Consensus 126 ~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 126 PAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 5322211110 0 0 001236778999998876 69999999875
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.7e-16 Score=93.37 Aligned_cols=130 Identities=16% Similarity=0.269 Sum_probs=102.7
Q ss_pred CCCccc-ceeeEEEeC---CEEEEEEecCCcccc-HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 1 MIPTVG-FNMRKVTKG---NVTIKLWDLGGQPRF-RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 1 ~~pt~~-~~~~~~~~~---~~~~~~~Dt~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
+.||++ +....++.+ .-.+.++||.|...+ ..+-.+|++-+|++++||+..+++||+.+..+...|.+......+
T Consensus 40 ~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEv 119 (198)
T KOG3883|consen 40 LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEV 119 (198)
T ss_pred cccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccc
Confidence 468888 444556533 367999999998877 677888999999999999999999999988777777777777889
Q ss_pred cEEEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 76 PLLVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+++++||+|+.++..+. ...... ....++..++++|.+..++-+.|..++..+-
T Consensus 120 piVVLaN~rdr~~p~~vd~d~A~~W----a~rEkvkl~eVta~dR~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 120 PIVVLANKRDRAEPREVDMDVAQIW----AKREKVKLWEVTAMDRPSLYEPFTYLASRLH 175 (198)
T ss_pred cEEEEechhhcccchhcCHHHHHHH----HhhhheeEEEEEeccchhhhhHHHHHHHhcc
Confidence 999999999998765542 233322 2344667999999999999999998887653
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-16 Score=108.49 Aligned_cols=135 Identities=21% Similarity=0.291 Sum_probs=105.7
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 71 (137)
.||.|++...+..++..+.+||++|+...+..|.+++.++++++||+|+++. ..+.+....++.+.....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 5889999999999999999999999999999999999999999999999974 346667777888887777
Q ss_pred CCCCcEEEEeeCCCCCCCC------------------CHH----HHHHHhCCCC-CCCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEAL------------------SKE----DLMEQMGLKS-ITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~------------------~~~----~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
..++|+++++||.|+.... ... -+...+.... ...+.+..+.++|.+..++..+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 7889999999999953321 011 1222221111 1235677889999999999999999
Q ss_pred HHHhhhhc
Q 032598 129 LVKHSKSK 136 (137)
Q Consensus 129 i~~~~~~~ 136 (137)
+.+.+..+
T Consensus 306 v~~~i~~~ 313 (317)
T cd00066 306 VKDIILQN 313 (317)
T ss_pred HHHHHHHH
Confidence 99888653
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-16 Score=107.66 Aligned_cols=134 Identities=18% Similarity=0.294 Sum_probs=106.2
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 71 (137)
.||.|++...+..++..+.+||++|+...+..|.+++..+++++||+|+++. ..+.+....++.+.....
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 6899999999999999999999999999999999999999999999999974 246777778888888777
Q ss_pred CCCCcEEEEeeCCCCCCCC----C-------------H----HHHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEAL----S-------------K----EDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~----~-------------~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
..++|+++++||.|+.... + . .-+...+..... ..+.+..+.++|.+..++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 7889999999999964321 1 0 112222221111 234677889999999999999999
Q ss_pred HHHhhhh
Q 032598 129 LVKHSKS 135 (137)
Q Consensus 129 i~~~~~~ 135 (137)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8888764
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=95.97 Aligned_cols=98 Identities=19% Similarity=0.144 Sum_probs=66.4
Q ss_pred EEEecCCcc-----ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHH
Q 032598 20 KLWDLGGQP-----RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKE 93 (137)
Q Consensus 20 ~~~Dt~g~~-----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~ 93 (137)
.+|||||+. .++.+.. .++.+|++++|+|++++.++.. ..|... ...|+++++||+|+.+.. ..+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAEADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCCcccCHH
Confidence 689999983 3444433 4789999999999999887654 233221 124999999999986532 222
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
......... ...+++++||++|+|++++|+++.
T Consensus 109 ~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETA----GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHc----CCCcEEEEecCCCCCHHHHHHHHh
Confidence 222211111 012589999999999999999875
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=92.55 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred eeEEEeCCEEEEEEecCCccccHH--------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...+..++.++.+|||||...+.. ....++..+|++++|+|++++.+......+.. ..+.|++++
T Consensus 41 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v 113 (157)
T cd04164 41 EESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVV 113 (157)
T ss_pred EEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEE
Confidence 344556678999999999755432 12345778999999999998766554433221 357999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.+.... . ......+++++||+++.|+++++++|.+.+
T Consensus 114 ~nK~D~~~~~~~------~----~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 114 LNKSDLLPDSEL------L----SLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEchhcCCcccc------c----cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 999999764432 1 111234699999999999999999998765
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=110.27 Aligned_cols=115 Identities=23% Similarity=0.337 Sum_probs=79.7
Q ss_pred EEEeCC-EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 11 KVTKGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~-~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
.+...+ ..+++|||||++.|..++...++.+|++++|+|+++....+.. ..+... ...++|+++++||+|+.+.
T Consensus 128 ~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 128 HVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA 202 (587)
T ss_pred EEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC
Confidence 344433 3899999999999999999999999999999999875322222 222221 2257899999999999653
Q ss_pred CCHHHHHHHhCCCCC---C-CCceeEEEeecccCCChHHHHHHHHH
Q 032598 90 LSKEDLMEQMGLKSI---T-DREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 90 ~~~~~~~~~~~~~~~---~-~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
....+...+..... . ....+++++||++|+|++++++++..
T Consensus 203 -~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 203 -NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred -CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 22233333221110 0 11356999999999999999999865
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-15 Score=112.58 Aligned_cols=117 Identities=23% Similarity=0.316 Sum_probs=82.4
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
..+..++..++||||||++.|..++...++.+|++++|+|+++....+....+ .. ....++|+++++||+|+...
T Consensus 330 ~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~----a~~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 330 YQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI-NH----AKAAGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HH----HHhcCCcEEEEEECcccccc
Confidence 34556678999999999999999999999999999999999885322221111 11 12257999999999999653
Q ss_pred CCHHHHHHHhC---CCCCC-CCceeEEEeecccCCChHHHHHHHHHh
Q 032598 90 LSKEDLMEQMG---LKSIT-DREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 90 ~~~~~~~~~~~---~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
. ...+...+. ..... ...++++++||++|+|+++++++|...
T Consensus 405 ~-~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 405 N-PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred C-HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 2 222222221 11000 123679999999999999999998753
|
|
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-17 Score=104.15 Aligned_cols=113 Identities=26% Similarity=0.348 Sum_probs=95.9
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+..+++...+|||+|++.+.+....|+++|.+.++||+-+|..||+....|.+.+... ...+|.++|-||+|+.+...
T Consensus 64 v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 64 VLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred hhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhh
Confidence 5567788999999999999999999999999999999999999999999999998764 35799999999999976543
Q ss_pred H-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 92 K-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 92 ~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
. +.+...+.. .++.+|++..-|+..+|..|++...
T Consensus 142 ~~~~evE~lak~l~~--------RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 142 MDKGEVEGLAKKLHK--------RLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred cchHHHHHHHHHhhh--------hhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 2 333343432 4899999999999999999998764
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-16 Score=114.76 Aligned_cols=123 Identities=17% Similarity=0.128 Sum_probs=85.4
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKI 84 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~ 84 (137)
...+..+..++..+.+|||||+++|...+..++.++|++++|+|+++.... +....+.. ... .++| +++++||+
T Consensus 39 d~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~-qT~ehl~i-l~~---lgi~~iIVVlNK~ 113 (581)
T TIGR00475 39 DLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMT-QTGEHLAV-LDL---LGIPHTIVVITKA 113 (581)
T ss_pred EeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcH-HHHHHHHH-HHH---cCCCeEEEEEECC
Confidence 344455666779999999999999998888899999999999999984322 22222222 222 4577 99999999
Q ss_pred CCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 85 DKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 85 D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+.+..... ++...+..... ...++++++||++|+|+++++.++.+.+.
T Consensus 114 Dlv~~~~~~~~~~ei~~~l~~~~~-~~~~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 114 DRVNEEEIKRTEMFMKQILNSYIF-LKNAKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCC-CCCCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 997543222 12222211100 12467999999999999999999887654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-15 Score=99.59 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=76.2
Q ss_pred EeCCEEEEEEecCCccccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 13 TKGNVTIKLWDLGGQPRFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
..++.++.+|||||..... .....+++.+|++++|+|+++..+.+ ..++..+. . .+.|+++++||+
T Consensus 44 ~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~-~---~~~p~ilV~NK~ 117 (270)
T TIGR00436 44 TTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQ-N---LKRPVVLTRNKL 117 (270)
T ss_pred EcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHH-h---cCCCEEEEEECe
Confidence 3456789999999975321 12345578999999999999876653 22333332 2 468999999999
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 85 DKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 85 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+.+..........+... .....++++||++|+|++++++++.+.+..
T Consensus 118 Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 118 DNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred eCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 996432222222222110 001158999999999999999999987643
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-15 Score=110.83 Aligned_cols=113 Identities=23% Similarity=0.290 Sum_probs=81.2
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
.+..+.+|||||++.|..++..+++.+|++++|+|+++....+... .+..+ ...++|+++++||+|+.... ...
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E-~I~~~----k~~~iPiIVViNKiDl~~~~-~e~ 366 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIE-AINYI----QAANVPIIVAINKIDKANAN-TER 366 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHH-HHHHH----HhcCceEEEEEECCCccccC-HHH
Confidence 4689999999999999999999999999999999998753332221 12222 22579999999999997532 233
Q ss_pred HHHHhCCC---CCC-CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 95 LMEQMGLK---SIT-DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 95 ~~~~~~~~---~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+...+... ... ...++++++||++|+|++++++++....
T Consensus 367 v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 367 IKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 33333211 000 1236799999999999999999998653
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-15 Score=104.99 Aligned_cols=110 Identities=21% Similarity=0.223 Sum_probs=79.2
Q ss_pred eEEEeCCEEEEEEecCCccccHHh--------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSM--------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
..+..++..+.+|||||....... ...+++.+|++++|+|++++.+.+.. |+..+. ..++|+++|+
T Consensus 244 ~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~ 317 (442)
T TIGR00450 244 GDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVL 317 (442)
T ss_pred EEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEE
Confidence 346677889999999998655432 23567899999999999988776654 544442 2468999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
||+|+... ....+...+ ...++++||++ .|++++|+.+.+.+.+
T Consensus 318 NK~Dl~~~-~~~~~~~~~--------~~~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 318 NKIDLKIN-SLEFFVSSK--------VLNSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred ECccCCCc-chhhhhhhc--------CCceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 99999654 222222222 23478999997 6999999988887653
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=103.66 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=80.4
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCcccc--HHhHHH------HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCC
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPRF--RSMWER------YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~~--~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 73 (137)
+|.....+.+...+ ..+.+|||+|..+. ...+.. .++.+|++++|+|++++.+.+....+...+ ......
T Consensus 230 tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL-~el~~~ 308 (426)
T PRK11058 230 ATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVL-EEIDAH 308 (426)
T ss_pred CCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHH-HHhccC
Confidence 34555555555444 38899999998432 222332 367899999999999987766654332222 222235
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHH-HhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLME-QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++|+++|+||+|+.+... ..... ..+. ..++++||++|+|+++++++|.+.+.
T Consensus 309 ~~pvIiV~NKiDL~~~~~-~~~~~~~~~~-------~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 309 EIPTLLVMNKIDMLDDFE-PRIDRDEENK-------PIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred CCCEEEEEEcccCCCchh-HHHHHHhcCC-------CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 799999999999964321 11111 1111 12588999999999999999998874
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=99.90 Aligned_cols=114 Identities=19% Similarity=0.162 Sum_probs=74.8
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-----Ch-HHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-----NL-PVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~-~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.....+..++.++.+|||||+.++...+...++.+|++++|+|+++.. .. .+...... .... ....|++++
T Consensus 67 ~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiiv 143 (219)
T cd01883 67 VGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVA 143 (219)
T ss_pred cceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEE
Confidence 344556778999999999999888877777788899999999998842 11 11111111 1111 123689999
Q ss_pred eeCCCCCCCC-C---HHHHHH----HhCCCCCCCCceeEEEeecccCCChH
Q 032598 81 GNKIDKPEAL-S---KEDLME----QMGLKSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 81 ~nK~D~~~~~-~---~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
+||+|+.... . ...+.. .+.........++++++||++|+|++
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9999997321 1 122222 23222223346789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=109.45 Aligned_cols=117 Identities=19% Similarity=0.079 Sum_probs=76.6
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
......+..++..+.+|||||++++.......++.+|++++|+|+++.++..... .+...+.... ...|+++++||+
T Consensus 74 d~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~ 151 (426)
T TIGR00483 74 DVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKM 151 (426)
T ss_pred EEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEECh
Confidence 3445567778899999999999988777777788999999999999864321111 1111122211 235789999999
Q ss_pred CCCCCCC------HHHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 85 DKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 85 D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
|+.+... ..++.+.+.........++++++||++|+|+++
T Consensus 152 Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 152 DSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9964222 122222332222223356799999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.4e-15 Score=108.43 Aligned_cols=121 Identities=22% Similarity=0.322 Sum_probs=89.5
Q ss_pred eeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+.+++.++++|||||+.+|...+..+++.+|++++|+|+.+. ...+...++..+.. .++|+++++||+|+.
T Consensus 55 ~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 55 KNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRP 129 (594)
T ss_pred eeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCC
Confidence 3445778899999999999999999999999999999999999874 23444455555543 468999999999986
Q ss_pred CCCC---HHHHHHHhCCCCCC--CCceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 88 EALS---KEDLMEQMGLKSIT--DREVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 88 ~~~~---~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
.... ..++.+.+...... ...++++++||++|. |+..+|+.+++.+
T Consensus 130 ~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 130 SARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 5432 23333333211111 124678999999995 7999999998765
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=91.66 Aligned_cols=113 Identities=23% Similarity=0.188 Sum_probs=80.9
Q ss_pred CEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
...+.+|||||..... .....+++.+|++++|+|+.+..+..... +.... ...+.|+++++||+|+..
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCC
Confidence 6789999999986543 34445788999999999999987655543 22222 225799999999999976
Q ss_pred CCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 89 ALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.....................+++++||+++.|++++++++.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 119 EEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred hhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 554443322112222233466799999999999999999998753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-15 Score=106.84 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=77.4
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+..++.++.+|||||++++.......++.+|++++|+|+++..++.....+...+.... ...|+++++||
T Consensus 71 T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK 148 (425)
T PRK12317 71 TIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINK 148 (425)
T ss_pred cceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEc
Confidence 3344555677788999999999999887766666789999999999987322222112222222221 22468999999
Q ss_pred CCCCCCCC------HHHHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 84 IDKPEALS------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 84 ~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+|+..... ..++...+.........++++++||++|+|++++
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 99975221 1223333322222223467999999999999874
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-14 Score=89.39 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=77.5
Q ss_pred EEEeCCEEEEEEecCCccccH-----------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 11 KVTKGNVTIKLWDLGGQPRFR-----------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.+..++..+.+|||||..... ......++.+|++++|+|++++.+..... +...+.. .+.|+++
T Consensus 44 ~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~ii 118 (174)
T cd01895 44 PFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVI 118 (174)
T ss_pred EEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEE
Confidence 345567789999999974331 11223467899999999999876654432 2222221 4689999
Q ss_pred EeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 80 LGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 80 v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
++||+|+.... ........+..........+++++||++++|++++++++.+.
T Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 119 VVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 99999997652 233333333221111123569999999999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-15 Score=96.74 Aligned_cols=132 Identities=24% Similarity=0.383 Sum_probs=93.8
Q ss_pred CCcccceeeEEE--e--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMRKVT--K--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~~~--~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++..+.... . ..+++.+|||+|+++++.++..++.+++++++++|.++.. +.+....|...+..... ...|
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 113 (219)
T COG1100 35 PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVP 113 (219)
T ss_pred CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCce
Confidence 467774444322 2 2578999999999999999999999999999999999954 44545577777665422 4699
Q ss_pred EEEEeeCCCCCCCCCHHH-HHHHhC-C----------CCCCCCceeEEEeecc--cCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKED-LMEQMG-L----------KSITDREVCCYMISCK--NSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~-~~~~~~-~----------~~~~~~~~~~~~~Sa~--~~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+........ +...+. . .........++++||+ .+.++.++|..+.+.+.
T Consensus 114 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 114 ILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred EEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 999999999987643211 111110 0 0000112338999999 99999999999998875
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=103.63 Aligned_cols=114 Identities=23% Similarity=0.250 Sum_probs=77.7
Q ss_pred ceeeEEEeCCEEEEEEecCCccc--------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+...+..+.+|||||... .......+++.+|++++|+|+.+..+..+ .++...+.. .++|++
T Consensus 39 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~pii 113 (435)
T PRK00093 39 RIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVI 113 (435)
T ss_pred ceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEE
Confidence 34455667789999999999976 23344556889999999999988544332 222222222 368999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++||+|..+.. ....+...... -.++++||++|.|++++++++.+.
T Consensus 114 lv~NK~D~~~~~--~~~~~~~~lg~-----~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 114 LVVNKVDGPDEE--ADAYEFYSLGL-----GEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EEEECccCccch--hhHHHHHhcCC-----CCCEEEEeeCCCCHHHHHHHHHhh
Confidence 999999975421 22222222111 137999999999999999999873
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-15 Score=108.26 Aligned_cols=110 Identities=25% Similarity=0.304 Sum_probs=77.7
Q ss_pred eeEEEeCCEEEEEEecCCccccHHh------HHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSM------WERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~------~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...+..++.++++|||||+.++... ...++ +.+|++++|+|+++.+. ...+..++.+ .++|++++
T Consensus 33 ~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~----~~~PiIIV 105 (591)
T TIGR00437 33 EGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE----LGIPMILA 105 (591)
T ss_pred EEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh----cCCCEEEE
Confidence 3446667788999999999876542 34444 37999999999987532 2222233322 46999999
Q ss_pred eeCCCCCCCCC----HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALS----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.+... .+.+.+.++ ++++++||++|+|++++++++.+..
T Consensus 106 lNK~Dl~~~~~i~~d~~~L~~~lg--------~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 106 LNLVDEAEKKGIRIDEEKLEERLG--------VPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EehhHHHHhCCChhhHHHHHHHcC--------CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999864432 233334443 3599999999999999999998754
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-15 Score=92.19 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=69.9
Q ss_pred EEecCCccc----cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q 032598 21 LWDLGGQPR----FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 96 (137)
Q Consensus 21 ~~Dt~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 96 (137)
+|||||... +.......++++|++++|+|+++.+++.. .|+..+ ..++|+++++||+|+.+. ....+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~ 112 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATR 112 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHH
Confidence 699999732 22222334789999999999998765422 233332 136789999999998653 333333
Q ss_pred HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 97 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.+.... ...+++++||++|+|++++|+.+.+.+.
T Consensus 113 ~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 113 KLLLETG---FEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred HHHHHcC---CCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 3222111 1136999999999999999999998775
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=103.90 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=78.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH--
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-- 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 93 (137)
+..+++|||||+++|...+......+|++++|+|+++.....+....+..+ ... ...|+++++||+|+.+.....
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHH
Confidence 468999999999999988888889999999999999743112222222222 111 224689999999997543221
Q ss_pred --HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 --DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 --~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++...+.. .....++++++||++|+|+++++++|...+
T Consensus 156 ~~~i~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 156 YEEIKEFVKG--TVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHhhhhh--cccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 22222211 012356799999999999999999998754
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-14 Score=107.35 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=81.3
Q ss_pred EEEeCCEEEEEEecCCccc----------cHHh-HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 11 KVTKGNVTIKLWDLGGQPR----------FRSM-WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~----------~~~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.+..++..+.+|||||..+ +..+ ....++.+|++++|+|+++..+.+... +...+.. .++|+++
T Consensus 492 ~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIi 566 (712)
T PRK09518 492 IVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVL 566 (712)
T ss_pred EEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEE
Confidence 4556777889999999632 2111 123478899999999999987776654 3333322 4689999
Q ss_pred EeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 80 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 80 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+||+|+.+......+...+..........+++++||++|.|++++++.+.+...+
T Consensus 567 V~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 567 VFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999997543333333333211111123457899999999999999999887753
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-14 Score=102.59 Aligned_cols=115 Identities=22% Similarity=0.271 Sum_probs=80.3
Q ss_pred eeeEEEeCCEEEEEEecCCc--------cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~--------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
....+..++..+.+|||||. +.+......+++.+|++++|+|+.+..+..+ ..+...++. .++|+++
T Consensus 38 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piil 112 (429)
T TIGR03594 38 KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVIL 112 (429)
T ss_pred eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEE
Confidence 34456677889999999996 3344556667889999999999987544332 222222222 4689999
Q ss_pred EeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 80 LGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 80 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++||+|+.+..........++.. .++++||++|.|+.++++++.+.+.
T Consensus 113 VvNK~D~~~~~~~~~~~~~lg~~-------~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 113 VANKIDGKKEDAVAAEFYSLGFG-------EPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred EEECccCCcccccHHHHHhcCCC-------CeEEEeCCcCCChHHHHHHHHHhcC
Confidence 99999987543322112222221 4899999999999999999988763
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=102.25 Aligned_cols=118 Identities=15% Similarity=0.111 Sum_probs=80.1
Q ss_pred EEeCCEEEEEEecCCccccHH-----------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 12 VTKGNVTIKLWDLGGQPRFRS-----------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+..++..+.+|||||..+... ....+++.+|++++|+|+++..+.++.. ....+.. .++|++++
T Consensus 216 ~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv 290 (435)
T PRK00093 216 FERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIV 290 (435)
T ss_pred EEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEE
Confidence 446778899999999643221 1223578899999999999876655432 2222222 46899999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+||+|+.+.....++...+..........+++++||++|.|++++++.+.+...
T Consensus 291 ~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 291 VNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred EECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999744333333333322111123457999999999999999999887654
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=102.50 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=87.4
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK- 92 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~- 92 (137)
++.+.++++||||+.+|......-+.-|+|+++|+|++..-..+.......++. .+..+|.|+||+|++..++.
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~ 196 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPER 196 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHH
Confidence 455999999999999999999999999999999999998654444444444442 46778999999999887553
Q ss_pred --HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 --EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++.+.+..... +++.+||+.|.|++++++++++.+
T Consensus 197 V~~q~~~lF~~~~~-----~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 197 VENQLFELFDIPPA-----EVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHHHHHhcCCcc-----ceEEEEeccCccHHHHHHHHHhhC
Confidence 345555555433 599999999999999999999876
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-14 Score=104.37 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=85.6
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+.+++.++++|||||+.+|...+..+++.+|++++|+|+.+....+ ...++..+.. .++|.++++||+|+....
T Consensus 62 ~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~----~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 62 AIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA----YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred EEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH----cCCCEEEEEECcCCCCCc
Confidence 46678999999999999999999999999999999999998753322 2233333322 468999999999987553
Q ss_pred C---HHHHHHHhCCCCC--CCCceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 91 S---KEDLMEQMGLKSI--TDREVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 91 ~---~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
. ..++.+.+..... ....++++.+||++|. |+..+++.+.+.+
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 3 2344444422111 1134779999999998 5888888887754
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=105.85 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=75.5
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC------
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------ 91 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------ 91 (137)
.+.+|||||++.+..++..+++.+|++++|+|+++....+.. ..+..+ . ..++|+++++||+|+.....
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i~~l-~---~~~vpiIVv~NK~Dl~~~~~~~~~~~ 144 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQ-EALNIL-R---MYKTPFVVAANKIDRIPGWRSHEGRP 144 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHH-HHHHHH-H---HcCCCEEEEEECCCccchhhhccCch
Confidence 489999999999999999999999999999999874332221 111212 2 24689999999999864210
Q ss_pred --------HHHH-----------HHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 92 --------KEDL-----------MEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 92 --------~~~~-----------~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
...+ ...+..... .....+++++||++|+|+++++.++...
T Consensus 145 f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 145 FMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0001 111111111 1235789999999999999999988753
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-14 Score=94.32 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=87.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++.++.+|||||+.++...+..+++.+|++++|+|+++.... ....++..+.. .++|+++++||+|+
T Consensus 54 ~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~ 128 (237)
T cd04168 54 SAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDR 128 (237)
T ss_pred eeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccc
Confidence 44556778899999999999999999999999999999999999986443 22333333322 46899999999998
Q ss_pred CCCCC---HHHHHHHhCC------------------------------------------CCC--------------CCC
Q 032598 87 PEALS---KEDLMEQMGL------------------------------------------KSI--------------TDR 107 (137)
Q Consensus 87 ~~~~~---~~~~~~~~~~------------------------------------------~~~--------------~~~ 107 (137)
..... ..++.+.++. ... ...
T Consensus 129 ~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 129 AGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRK 208 (237)
T ss_pred cCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 75321 1222222221 000 123
Q ss_pred ceeEEEeecccCCChHHHHHHHHHhh
Q 032598 108 EVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 108 ~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
-++++..||.++.|+..+++.+.+.+
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhc
Confidence 46677889999999999999998765
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-14 Score=106.01 Aligned_cols=111 Identities=23% Similarity=0.203 Sum_probs=75.3
Q ss_pred EEeCCEEEEEEecCCccc--------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 12 VTKGNVTIKLWDLGGQPR--------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
...++..+.+|||||.+. +......+++.+|++++|+|+++.....+. .+...+ . ..++|+++|+||
T Consensus 318 ~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~-~i~~~L-r---~~~~pvIlV~NK 392 (712)
T PRK09518 318 AEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDE-RIVRML-R---RAGKPVVLAVNK 392 (712)
T ss_pred EEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHH-H---hcCCCEEEEEEC
Confidence 345678999999999753 334455668899999999999874322211 232323 2 257999999999
Q ss_pred CCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 84 IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 84 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+..... ...+.+... .. ..+++||++|.|++++++++++.+.
T Consensus 393 ~D~~~~~~--~~~~~~~lg-~~----~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 393 IDDQASEY--DAAEFWKLG-LG----EPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred cccccchh--hHHHHHHcC-CC----CeEEEECCCCCCchHHHHHHHHhcc
Confidence 99864322 122222211 11 2578999999999999999998764
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-15 Score=93.88 Aligned_cols=127 Identities=20% Similarity=0.342 Sum_probs=101.7
Q ss_pred CCCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|.||+|.....+. .+.+++..|||+|++.+..+...++-++.+.+++||.+..-++..+.+|...+... ..++|
T Consensus 39 y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv--~~NiP 116 (216)
T KOG0096|consen 39 YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRV--RENIP 116 (216)
T ss_pred ccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHH--hcCCC
Confidence 5688886665533 23599999999999999999999999999999999999988899999999888765 35699
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++.+||.|..+.....+- ......++++++++||+++.|.+.-|-|+++.+.
T Consensus 117 iv~cGNKvDi~~r~~k~k~-----v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 117 IVLCGNKVDIKARKVKAKP-----VSFHRKKNLQYYEISAKSNYNFERPFLWLARKLT 169 (216)
T ss_pred eeeeccceecccccccccc-----ceeeecccceeEEeecccccccccchHHHhhhhc
Confidence 9999999998654321111 1122234678999999999999999999998875
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=107.55 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEALSKE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~ 93 (137)
++..+.+|||||+++|...+...+..+|++++|+|+++.... +....+. +... .++| +++++||+|+.+.....
T Consensus 49 ~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~-qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~ 123 (614)
T PRK10512 49 DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMA-QTREHLA-ILQL---TGNPMLTVALTKADRVDEARIA 123 (614)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcH-HHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHH
Confidence 456789999999999988888889999999999999874322 2222222 2222 3455 57999999997543222
Q ss_pred ----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 ----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++.+.+... .....+++++||++|+|++++++.|.+...
T Consensus 124 ~v~~ei~~~l~~~--~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 124 EVRRQVKAVLREY--GFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHHHhc--CCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 222222211 112356999999999999999999987654
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=97.81 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=86.4
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCC---CCCChHHHHHHHHHHhcCC-
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAA---DYDNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~---~~~~~~~~~~~~~~~~~~~- 70 (137)
+|...+...+...+ .++.++||||..... ......++.++++++|+|++ ..++.+....+...+....
T Consensus 192 TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~ 271 (390)
T PRK12298 192 TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP 271 (390)
T ss_pred CccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh
Confidence 34455566666554 469999999975321 12223478899999999988 3455565666666665431
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...+.|+++++||+|+.......+....+... . .....++++||++++|+++++++|.+.+.+
T Consensus 272 ~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~-~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 272 KLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-L-GWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred hhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-h-CCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 22468999999999997543333222222110 0 011248999999999999999999988754
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=100.47 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=75.2
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
..+++|||||++++..........+|++++|+|++++....+....+..+ ... ...|+++++||+|+.+.....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 68999999999988776666667789999999999753111111222222 111 224689999999997543321
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++...+... .....+++++||++|+|++++++.|.+.+.
T Consensus 162 ~~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 222222211 122467999999999999999999988653
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=89.74 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=73.9
Q ss_pred CEEEEEEecCCc----------cccHHhHHHHhccC---CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 16 NVTIKLWDLGGQ----------PRFRSMWERYCRAV---SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 16 ~~~~~~~Dt~g~----------~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+.++.+|||||. +.+......+++.+ +++++|+|.+++.+... .++...+. ..++|+++++|
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~---~~~~~~iiv~n 143 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLK---EYGIPVLIVLT 143 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHH---HcCCcEEEEEE
Confidence 468999999994 34445556666654 67888899877544332 22222222 24689999999
Q ss_pred CCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 83 KIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 83 K~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+|+.+....+. +...+... ...++++||++++|++++++.|.+.+++
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 999975433322 22333211 3468999999999999999999988764
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-14 Score=90.58 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=72.7
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 89 (137)
.+..++.++.++||||+.++.......+..+|++++|+|+...-..+. ...+..+. . .++| +++++||+|+...
T Consensus 59 ~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~-~---~~~~~iIvviNK~D~~~~ 133 (195)
T cd01884 59 EYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLAR-Q---VGVPYIVVFLNKADMVDD 133 (195)
T ss_pred EecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH-H---cCCCcEEEEEeCCCCCCc
Confidence 455667899999999999888877888899999999999987432221 12222222 1 4566 7789999998642
Q ss_pred CCH-----HHHHHHhCCCCCCCCceeEEEeecccCCCh
Q 032598 90 LSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNI 122 (137)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 122 (137)
... .++...+.........++++++||++|.|.
T Consensus 134 ~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 134 EELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 221 234444433333334678999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=88.52 Aligned_cols=133 Identities=35% Similarity=0.583 Sum_probs=111.2
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
..||.-.....+..++.+++-.|.+|+...+..|..|+..++++++.+|+.|.+.+.+.+..++.++........|+++.
T Consensus 48 hvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lil 127 (193)
T KOG0077|consen 48 HVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLIL 127 (193)
T ss_pred cCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceee
Confidence 36888888888888999999999999999999999999999999999999999999999999999888777789999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC------------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI------------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|.......+++...++.... ..+-...+.||...+.+.-+.|.|+...+
T Consensus 128 gnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 128 GNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred cccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 999999887766665555532111 12235578899999999889999887654
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-13 Score=89.25 Aligned_cols=112 Identities=14% Similarity=0.079 Sum_probs=70.2
Q ss_pred eeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
...+..++.++.+|||||++++...+...++.+|++++|+|+++....+. .....+.... ...++++++||+|+..
T Consensus 69 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~ 144 (208)
T cd04166 69 YRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL--GIRHVVVAVNKMDLVD 144 (208)
T ss_pred eeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc--CCCcEEEEEEchhccc
Confidence 34456678899999999999887767778899999999999987532221 1111222211 2245788999999864
Q ss_pred CCC--HHHHHHHhCC--CCCCCCceeEEEeecccCCChHH
Q 032598 89 ALS--KEDLMEQMGL--KSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 89 ~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
... ...+...+.. ...+....+++++||++|.|+.+
T Consensus 145 ~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 321 1111111110 00111234689999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=84.04 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=75.6
Q ss_pred EEeCCEEEEEEecCCccccHH--------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
+..++..+.+|||||...... .....+..+|++++|+|++++.+ +...+....... .+.|+++++||
T Consensus 46 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK 120 (168)
T cd04163 46 YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNK 120 (168)
T ss_pred EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEc
Confidence 345568899999999754332 33445788999999999998622 222222222221 35899999999
Q ss_pred CCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 84 IDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 84 ~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+|+... ....+....+... ....+++++|++++.|+++++++|.+.+
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 121 IDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred hhccccHHHHHHHHHHHHhc---cCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 999742 2233333333221 1234689999999999999999998753
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=91.35 Aligned_cols=115 Identities=22% Similarity=0.184 Sum_probs=77.8
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
+..++..+++.||||++++.......+. .+|++++|+|+........ ...+..+. ..++|+++++||+|+.+.
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~----~~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLAL----ALNIPVFVVVTKIDLAPA 153 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHH----HcCCCEEEEEECccccCH
Confidence 4456789999999999998776665564 6899999999987543221 22222222 256899999999998654
Q ss_pred CCHH----HHHHHhCCCCC---------------------CCCceeEEEeecccCCChHHHHHHHHH
Q 032598 90 LSKE----DLMEQMGLKSI---------------------TDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 90 ~~~~----~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
.... ++...++.... .....+++.+||.+|+|++++...|..
T Consensus 154 ~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 154 NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3322 33334432110 122457899999999999999887754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-13 Score=89.73 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=78.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCCCCC-hHHHHHHHHH----------
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAADYDN-LPVSRSELHD---------- 65 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~---------- 65 (137)
|.......+..++.++++|||||..... ......++.+|++++|+|+++... .+.+...++.
T Consensus 34 T~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~ 113 (233)
T cd01896 34 TLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPP 113 (233)
T ss_pred cccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCC
Confidence 4445555667788999999999975332 223456889999999999987542 2222222210
Q ss_pred ------------------------------HhcC------------------------CCCCCCcEEEEeeCCCCCCCCC
Q 032598 66 ------------------------------LLSK------------------------PSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 66 ------------------------------~~~~------------------------~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+++. .+...+|+++++||+|+.+...
T Consensus 114 ~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~ 193 (233)
T cd01896 114 NITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE 193 (233)
T ss_pred eEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH
Confidence 0000 0113479999999999964322
Q ss_pred HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 92 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. .+.. ...++++||++|.|++++++.+.+.+.
T Consensus 194 ~~----~~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 194 LD----LLAR------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred HH----HHhc------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 22 1211 124899999999999999999988763
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.1e-14 Score=98.70 Aligned_cols=110 Identities=23% Similarity=0.300 Sum_probs=88.2
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-- 91 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 91 (137)
++.+.++++||||+-+|.-....-+..|.|.++|+|++..-.-+.+...+.++. .+..++-|.||+|++...+
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adper 147 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPER 147 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHH
Confidence 356999999999999998777778889999999999998644444445544553 4577899999999987754
Q ss_pred -HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 92 -KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..++.+.++..... .+.+|||+|.|++++++.|++.+
T Consensus 148 vk~eIe~~iGid~~d-----av~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 148 VKQEIEDIIGIDASD-----AVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred HHHHHHHHhCCCcch-----heeEecccCCCHHHHHHHHHhhC
Confidence 35677777766544 79999999999999999999875
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-13 Score=92.07 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=75.8
Q ss_pred eCCEEEEEEecCCccccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 14 KGNVTIKLWDLGGQPRFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++.++.+|||||..... ......+..+|++++|+|+++..+ ....++...+. ..+.|+++++||+|
T Consensus 50 ~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiD 124 (292)
T PRK00089 50 EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKID 124 (292)
T ss_pred cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCc
Confidence 356899999999975432 223345778999999999988322 22223323322 24689999999999
Q ss_pred CCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 86 KPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+... .........+... .....++++||+++.|++++++++.+.+.
T Consensus 125 l~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 125 LVKDKEELLPLLEELSEL---MDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCHHHHHHHHHHHHhh---CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 9732 2223333333211 11346899999999999999999998764
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-14 Score=96.07 Aligned_cols=135 Identities=18% Similarity=0.318 Sum_probs=106.5
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~ 71 (137)
.||.|+....+..++.++.+.|++||...+..|.+++.++++++|++++++.+ .+.+...+++.+.....
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 58999999999999999999999999999999999999999999999998743 24556678888888888
Q ss_pred CCCCcEEEEeeCCCCCCCC----C-------------H----HHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEAL----S-------------K----EDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWL 129 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~----~-------------~----~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i 129 (137)
..+.++|++.||.|+-+.. + . ..+...+..... ..+.+.++.++|.+.++|+.+|..+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 8899999999999975321 1 0 112222211111 1256778899999999999999999
Q ss_pred HHhhhhc
Q 032598 130 VKHSKSK 136 (137)
Q Consensus 130 ~~~~~~~ 136 (137)
.+.+.++
T Consensus 340 ~d~Ii~~ 346 (354)
T KOG0082|consen 340 TDTIIQN 346 (354)
T ss_pred HHHHHHH
Confidence 9888754
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=84.95 Aligned_cols=111 Identities=29% Similarity=0.363 Sum_probs=77.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCcccc------HHhHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~------~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
|+......+..++..+.++|+||..+. ......++ ...|++++|+|++. +++......++.. .++
T Consensus 34 Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e----~g~ 106 (156)
T PF02421_consen 34 TVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLE----LGI 106 (156)
T ss_dssp SSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHH----TTS
T ss_pred CeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHH----cCC
Confidence 444555667788899999999995322 23444454 57999999999987 3433344445543 469
Q ss_pred cEEEEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHH
Q 032598 76 PLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWL 129 (137)
Q Consensus 76 p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 129 (137)
|+++++||+|..... ....+.+.++. +++++||++++|++++++.|
T Consensus 107 P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 107 PVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp SEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTTTBTHHHHHHHH
T ss_pred CEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCCCcCHHHHHhhC
Confidence 999999999986543 34677777765 49999999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=83.50 Aligned_cols=130 Identities=28% Similarity=0.350 Sum_probs=95.1
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhc---cCCEEEEEEeCCC-CCChHHHHHHHHHHhcCC--CCCCCc
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---AVSAIVYVVDAAD-YDNLPVSRSELHDLLSKP--SLNGIP 76 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~---~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~p 76 (137)
|+++.|...+..+.-..+++|.||+.+.+.....+++ .+-++|||+|+.. .....+....+-.++-.. ....+|
T Consensus 68 tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~ 147 (238)
T KOG0090|consen 68 TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPP 147 (238)
T ss_pred eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCC
Confidence 4455677777777777999999999999988888887 7999999999875 345566666666555443 245799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCC--------------C---------------------CCCCCceeEEEeecccCCC
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGL--------------K---------------------SITDREVCCYMISCKNSTN 121 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~--------------~---------------------~~~~~~~~~~~~Sa~~~~~ 121 (137)
+++.+||.|+....+.+.+.+.+.. . .....++.|.++|++++ +
T Consensus 148 vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~ 226 (238)
T KOG0090|consen 148 VLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-E 226 (238)
T ss_pred EEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-C
Confidence 9999999999877665433333310 0 00124677899999988 8
Q ss_pred hHHHHHHHHHhh
Q 032598 122 IDTVIDWLVKHS 133 (137)
Q Consensus 122 v~~~~~~i~~~~ 133 (137)
+++.-+||.+.+
T Consensus 227 i~~~~~wi~~~l 238 (238)
T KOG0090|consen 227 IDQWESWIREAL 238 (238)
T ss_pred hHHHHHHHHHhC
Confidence 999999998753
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=96.22 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=83.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
+.-.+.|+||||++.|..++....+-+|.+++|+++++.--.+.. +.+ +.....+.|+++..||+|+.+..+ ..
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTi----EAI-~hak~a~vP~iVAiNKiDk~~~np-~~ 126 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTI----EAI-NHAKAAGVPIVVAINKIDKPEANP-DK 126 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHH----HHH-HHHHHCCCCEEEEEecccCCCCCH-HH
Confidence 346899999999999999999999999999999999985332221 122 122237899999999999986543 33
Q ss_pred HHHHhCCCCCC----CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 95 LMEQMGLKSIT----DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 95 ~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
....+...... .....++++||++|+|+.+|+..+.-..
T Consensus 127 v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 127 VKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 33333222221 3457899999999999999999887554
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=95.87 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=59.7
Q ss_pred eeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+.+++.++++|||||+.++......+++.+|++++|+|+++.... ....++... ...++|+++++||+|+.
T Consensus 70 ~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 70 SVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRD 144 (526)
T ss_pred eeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccc
Confidence 3345778899999999999999988888889999999999999875322 222333322 22579999999999986
Q ss_pred CCC
Q 032598 88 EAL 90 (137)
Q Consensus 88 ~~~ 90 (137)
...
T Consensus 145 ~a~ 147 (526)
T PRK00741 145 GRE 147 (526)
T ss_pred ccC
Confidence 543
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-13 Score=82.28 Aligned_cols=124 Identities=21% Similarity=0.371 Sum_probs=92.3
Q ss_pred cccceee--E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 4 TVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 4 t~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
|.|.|+- + +.+..+.+.+||.+|++++..+.+-.++.+.+++|+||.+.+.++..+..|..+..+.. ...+| ++
T Consensus 52 ~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-il 129 (205)
T KOG1673|consen 52 TLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-IL 129 (205)
T ss_pred HhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EE
Confidence 3455543 3 33456888999999999999999999999999999999999999999999999987753 36688 67
Q ss_pred EeeCCCCCCCCCHH------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 80 LGNKIDKPEALSKE------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 80 v~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++|.|.--..+.+ .....+.. --+...++||+....|+.+.|+-+...+
T Consensus 130 vGTKyD~fi~lp~e~Q~~I~~qar~YAk----~mnAsL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 130 VGTKYDLFIDLPPELQETISRQARKYAK----VMNASLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred eccchHhhhcCCHHHHHHHHHHHHHHHH----HhCCcEEEeeccccccHHHHHHHHHHHH
Confidence 89999964333321 11111110 0123489999999999999999876654
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=98.34 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=73.5
Q ss_pred EEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-------
Q 032598 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------- 91 (137)
Q Consensus 19 ~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------- 91 (137)
+.+|||||++.|..++...++.+|++++|+|+++....+. ...+..+ . ..++|+++++||+|+.....
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt-~e~i~~~-~---~~~vpiIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQT-IEAINIL-K---RRKTPFVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhH-HHHHHHH-H---HcCCCEEEEEECcCCchhhhhhcCchH
Confidence 7899999999999999888999999999999987322111 1112222 2 25789999999999852110
Q ss_pred -----------H-------HHHHHHhCCCCCC----------CCceeEEEeecccCCChHHHHHHHHH
Q 032598 92 -----------K-------EDLMEQMGLKSIT----------DREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 92 -----------~-------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
. .++...+...... ...++++++||++|+|+++++..+..
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0 0111222211111 23577999999999999999988864
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=86.15 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=63.5
Q ss_pred EEEEEecCCcc----------ccHHhHHHHhcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGGQP----------RFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g~~----------~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.+.+|||||.. .+......+++. ++++++|+|++...+..... ... .... .++|+++++||+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~-~~~~---~~~pviiv~nK~ 139 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLE-WLRE---RGIPVLIVLTKA 139 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHH-HHHH---cCCCEEEEEECc
Confidence 79999999952 344444556654 57999999998754443331 222 2222 468999999999
Q ss_pred CCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChH
Q 032598 85 DKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 85 D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
|+...... .++.+.++.. ...+.++++||++|+|++
T Consensus 140 D~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 140 DKLKKSELNKQLKKIKKALKKD---ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ccCCHHHHHHHHHHHHHHHhhc---cCCCceEEEECCCCCCCC
Confidence 99754322 3334444321 123469999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.3e-13 Score=95.24 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=78.1
Q ss_pred ccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChH-------HHHHHHHHHhcCCCCCCCc-
Q 032598 5 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP-------VSRSELHDLLSKPSLNGIP- 76 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~p- 76 (137)
+......+..++..++++||||+++|...+...+..+|++++|+|+++. .++ +..+.+..+ . ..++|
T Consensus 73 i~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~---~~gi~~ 147 (447)
T PLN00043 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F---TLGVKQ 147 (447)
T ss_pred EEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H---HcCCCc
Confidence 3344455677889999999999999999999999999999999999873 221 222222222 1 14564
Q ss_pred EEEEeeCCCCCCC-CC-------HHHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 77 LLVLGNKIDKPEA-LS-------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 77 ~ivv~nK~D~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
+++++||+|+... .. ..++...++...+...++.++++||++|+|+.+
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 6888999998621 11 233444443333333457899999999999853
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=90.89 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=73.7
Q ss_pred cccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHHHhCCCCCC
Q 032598 28 PRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE-DLMEQMGLKSIT 105 (137)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 105 (137)
+++..+.+.+++++|++++|+|++++. +++.+.+|+..+.. .++|+++++||+|+.+..... +....+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~---- 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN---- 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHH----
Confidence 667777788999999999999999877 88888888875532 679999999999996543322 22333321
Q ss_pred CCceeEEEeecccCCChHHHHHHHHH
Q 032598 106 DREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 106 ~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
.+..++++||++|+|++++|+.+..
T Consensus 96 -~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 -IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -CCCeEEEEecCCchhHHHHHhhhcC
Confidence 2346899999999999999998764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=91.55 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=78.2
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 89 (137)
.+..++.++.++||||+++|.......+..+|++++|+|+++....+ ....+..+.. .++| +++++||+|+.+.
T Consensus 69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~----~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ----VGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred EecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCEEEEEEEecCCcch
Confidence 34456778999999999988877777788899999999998742222 2223332222 3577 5788999998743
Q ss_pred CCHH-----HHHHHhCCCCCCCCceeEEEeecccCC--------ChHHHHHHHHHhh
Q 032598 90 LSKE-----DLMEQMGLKSITDREVCCYMISCKNST--------NIDTVIDWLVKHS 133 (137)
Q Consensus 90 ~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~v~~~~~~i~~~~ 133 (137)
.... ++...+....+.....+++++||++|. ++.++++.+.+.+
T Consensus 144 ~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 144 EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2221 233333222222335679999999983 5778888877654
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=94.11 Aligned_cols=116 Identities=23% Similarity=0.294 Sum_probs=85.2
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.++ ++-.++|.||||+..|.+++....+-+|.+++|+.++|.--.+ ..+.+ +.....+.|+++.+||+|.++..
T Consensus 196 ~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQ----T~EaI-khAk~A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 196 TLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQ----TLEAI-KHAKSANVPIVVAINKIDKPGAN 269 (683)
T ss_pred ecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHh----HHHHH-HHHHhcCCCEEEEEeccCCCCCC
Confidence 344 5689999999999999999999999999999999998853222 22222 23344789999999999998765
Q ss_pred CHHHHHHHhCCCCC----CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 91 SKEDLMEQMGLKSI----TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 91 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+. ....+|-.... -.-..+++++||++|+|++.|-+.+.-.+
T Consensus 270 pe-kv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 270 PE-KVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred HH-HHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 43 33333321111 12367899999999999999988887544
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-12 Score=95.79 Aligned_cols=82 Identities=27% Similarity=0.219 Sum_probs=65.6
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+|++.+...+.+++.++++|||||+.++...+..+++.+|++++|+|+++.........| ..+. ..++|+++++|
T Consensus 59 ~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~----~~~~p~iiviN 133 (687)
T PRK13351 59 ITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD----RYGIPRLIFIN 133 (687)
T ss_pred CCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----hcCCCEEEEEE
Confidence 456666677888899999999999999999999999999999999999987655543333 2222 24689999999
Q ss_pred CCCCCCC
Q 032598 83 KIDKPEA 89 (137)
Q Consensus 83 K~D~~~~ 89 (137)
|+|+...
T Consensus 134 K~D~~~~ 140 (687)
T PRK13351 134 KMDRVGA 140 (687)
T ss_pred CCCCCCC
Confidence 9998764
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=100.29 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=73.9
Q ss_pred EEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-------
Q 032598 19 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS------- 91 (137)
Q Consensus 19 ~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------- 91 (137)
+.+|||||++.+..+....+..+|++++|+|+++.-..+. ...+..+ .. .++|+++++||+|+.....
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT-~e~I~~l-k~---~~iPiIVViNKiDL~~~~~~~~~~~~ 602 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQT-IEAINIL-RQ---YKTPFVVAANKIDLIPGWNISEDEPF 602 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhH-HHHHHHH-HH---cCCCEEEEEECCCCccccccccchhh
Confidence 8999999999999888888889999999999987422221 1122222 22 3689999999999853211
Q ss_pred -----------HHHHH-------HHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 92 -----------KEDLM-------EQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 92 -----------~~~~~-------~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
..++. ..|..... ....++++++||++|+|+++|+..+...
T Consensus 603 ~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 603 LLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 01111 11111111 1235789999999999999999988644
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=90.75 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=69.1
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~ 88 (137)
..+..++.++.+|||||+++|..........+|++++|+|+.+....+ ....+..+.. .++|.+ +++||+|+.+
T Consensus 68 ~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 68 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCC
Confidence 345556788999999999998877777778899999999998743222 2223333322 357765 6899999875
Q ss_pred CCCH-----HHHHHHhCCCCCCCCceeEEEeecccCC
Q 032598 89 ALSK-----EDLMEQMGLKSITDREVCCYMISCKNST 120 (137)
Q Consensus 89 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 120 (137)
.... .++...+.........++++++||++|.
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 143 DEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 3221 1233333322222234789999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-13 Score=89.28 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=80.2
Q ss_pred eeEEEeCC-EEEEEEecCCccccHH----h---HHHHhccCCEEEEEEeCCCC---CChHHHHHHHHHHhcC-CCCCCCc
Q 032598 9 MRKVTKGN-VTIKLWDLGGQPRFRS----M---WERYCRAVSAIVYVVDAADY---DNLPVSRSELHDLLSK-PSLNGIP 76 (137)
Q Consensus 9 ~~~~~~~~-~~~~~~Dt~g~~~~~~----~---~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~p 76 (137)
...+.+++ .++++.|.||.-...+ + ....++.|+.++||+|++.. ...+++..+..++-.+ ......|
T Consensus 235 iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp 314 (366)
T KOG1489|consen 235 IGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRP 314 (366)
T ss_pred cceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCc
Confidence 33455544 4499999999743322 2 22336779999999999987 5555555544444332 3446789
Q ss_pred EEEEeeCCCCCCCCC-H-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 77 LLVLGNKIDKPEALS-K-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
.++|+||+|+.+... . .++.+.+... +++++||++++|++++++.|-+.
T Consensus 315 ~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 315 ALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred eEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEeeeccccchHHHHHHHhhc
Confidence 999999999953322 2 4555555432 69999999999999999987653
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-12 Score=96.41 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=76.9
Q ss_pred EEEeCCEEEEEEecCCccccHH----------hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRS----------MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~----------~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.+..++.++++|||||..++.. ....++ +.+|++++|+|+++.+... .+..++.+ .++|++
T Consensus 44 ~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvI 116 (772)
T PRK09554 44 QFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCI 116 (772)
T ss_pred EEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEE
Confidence 4667788999999999876532 123343 4799999999998854322 23333332 469999
Q ss_pred EEeeCCCCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++||+|+.+.... +++.+.++ ++++++||++|+|++++.+.+.+..
T Consensus 117 vVlNK~Dl~~~~~i~id~~~L~~~LG--------~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 117 VALNMLDIAEKQNIRIDIDALSARLG--------CPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEEchhhhhccCcHHHHHHHHHHhC--------CCEEEEEeecCCCHHHHHHHHHHhh
Confidence 99999998654332 23344443 3599999999999999999987754
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-12 Score=94.02 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=76.3
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
..+.++||||+++|-..+...+..+|++++|+|+.+.....+..+.+. +.... .-.|++++.||+|+.+.....
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHHHHHHHH
Confidence 478999999999998888888899999999999987421122222222 22221 124689999999997532222
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++.+.+... .....+++++||++|+|++.|++.|.+.+
T Consensus 194 ~ei~~~l~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 194 EEIRNFVKGT--IADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 222222211 12356799999999999999999998654
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-12 Score=90.24 Aligned_cols=114 Identities=14% Similarity=0.063 Sum_probs=72.9
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
..+..+..++.++.++||||+++|...+...+..+|++++|+|+......+.. ..+. +.... ...++++++||+|+
T Consensus 70 ~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~-~~~~~--~~~~iivviNK~D~ 145 (406)
T TIGR02034 70 VAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSY-IASLL--GIRHVVLAVNKMDL 145 (406)
T ss_pred eeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHH-HHHHc--CCCcEEEEEEeccc
Confidence 34445666788999999999999987777788999999999999875322211 1111 11111 12458899999999
Q ss_pred CCCCC--HHHHHHHhCC--CCCCCCceeEEEeecccCCChHH
Q 032598 87 PEALS--KEDLMEQMGL--KSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 87 ~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
.+... ..++...+.. ........+++++||++|+|+++
T Consensus 146 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 146 VDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 64322 1222222210 00111245699999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=91.63 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=77.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---Ch---HHHHHHHHHHhcCCCCCCCc-EEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL---PVSRSELHDLLSKPSLNGIP-LLV 79 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-~iv 79 (137)
..+..+..++..++++||||+++|...+...+..+|++++|+|+++.. .+ .+..+.+..+ . ..++| +++
T Consensus 75 ~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~---~~gi~~iiv 150 (446)
T PTZ00141 75 IALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-F---TLGVKQMIV 150 (446)
T ss_pred eeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-H---HcCCCeEEE
Confidence 444556778899999999999999888888899999999999998742 01 1222222222 2 14566 578
Q ss_pred EeeCCCCCCC----CCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 80 LGNKIDKPEA----LSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 80 v~nK~D~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
++||+|.... ... .++...+....+...+++++++||.+|+|+.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 151 CINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999995321 112 33444444333333468899999999999863
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-13 Score=82.77 Aligned_cols=69 Identities=28% Similarity=0.565 Sum_probs=55.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHH---HHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSE---LHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
....+.+||++|++.+...+...++.+|++++|||++++.+++++..+ +..+.+. ..++|+++++||.|
T Consensus 48 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 48 DRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred CceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 344699999999999888878889999999999999999888886544 4444332 35699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=91.23 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=77.2
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~ 89 (137)
.+..++.++.++||||+++|.......+..+|++++|+|+.+....+ ....+..+. ..++|.+ +++||+|+.+.
T Consensus 69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~----~~gi~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 69 EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLAR----QVGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred EEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHH----HcCCCeEEEEEEecCCcch
Confidence 34456778999999999988777777788999999999998743222 222332222 2457866 57999999743
Q ss_pred CCH-H----HHHHHhCCCCCCCCceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 90 LSK-E----DLMEQMGLKSITDREVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 90 ~~~-~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
... + ++...+....+...+.+++++||++|. ++.++++.|...+
T Consensus 144 ~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 221 1 232333222222235779999999984 5778888877653
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-12 Score=84.04 Aligned_cols=116 Identities=22% Similarity=0.185 Sum_probs=78.6
Q ss_pred EEeCCEEEEEEecCCccccHH--------hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~--------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
+..++.++.++||||...-+. .....++.+|.++||+|+++.....+ .+.-+.++. .+.|+++++||
T Consensus 49 ~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~---~~~pvil~iNK 123 (298)
T COG1159 49 VTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK---TKTPVILVVNK 123 (298)
T ss_pred EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh---cCCCeEEEEEc
Confidence 446689999999999643222 22333678999999999998543322 222222222 46899999999
Q ss_pred CCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 84 IDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 84 ~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|..+... ...+...+... .....++++||++|.|++.+.+.+...+-+
T Consensus 124 ID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 124 IDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cccCCcHHHHHHHHHHHHhh---CCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 99987655 23333333221 112268999999999999999999887653
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-11 Score=91.68 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=63.3
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|++.....+..++..+.+|||||+.++...+...++.+|++++|+|++......... .+..+. ..++|+++++||
T Consensus 47 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~----~~~~p~iiv~NK 121 (668)
T PRK12740 47 SITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTET-VWRQAE----KYGVPRIIFVNK 121 (668)
T ss_pred CeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHH----HcCCCEEEEEEC
Confidence 555666678888999999999999988888888999999999999998865544332 222222 246899999999
Q ss_pred CCCCCC
Q 032598 84 IDKPEA 89 (137)
Q Consensus 84 ~D~~~~ 89 (137)
+|+...
T Consensus 122 ~D~~~~ 127 (668)
T PRK12740 122 MDRAGA 127 (668)
T ss_pred CCCCCC
Confidence 998754
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.5e-12 Score=84.90 Aligned_cols=90 Identities=26% Similarity=0.344 Sum_probs=65.4
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+.+++.++++|||||+.++.......++.+|++++|+|+++..... ...++... . ..++|+++++||+|+
T Consensus 61 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~-~---~~~~P~iivvNK~D~ 135 (267)
T cd04169 61 SSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVC-R---LRGIPIITFINKLDR 135 (267)
T ss_pred EEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHH-H---hcCCCEEEEEECCcc
Confidence 344467888999999999999999887888899999999999998753322 22222222 2 257899999999998
Q ss_pred CCCCC---HHHHHHHhCC
Q 032598 87 PEALS---KEDLMEQMGL 101 (137)
Q Consensus 87 ~~~~~---~~~~~~~~~~ 101 (137)
..... ..++.+.++.
T Consensus 136 ~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 136 EGRDPLELLDEIEEELGI 153 (267)
T ss_pred CCCCHHHHHHHHHHHHCC
Confidence 76543 3455665554
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=87.48 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=79.8
Q ss_pred eeeEEEeCCEEEEEEecCCccccH---------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFR---------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~---------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.+......+..+.++||+|.+... ......+..||+++||+|....-+.. +..+-.++. ..++|++
T Consensus 42 ~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~--D~~ia~~Lr---~~~kpvi 116 (444)
T COG1160 42 IYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPA--DEEIAKILR---RSKKPVI 116 (444)
T ss_pred ccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHH--HHHHHHHHH---hcCCCEE
Confidence 344455667889999999976432 22333367899999999998754433 233334433 2679999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+|+||+|...........-.++.. ..+++||.+|.|+.+|.+++.+.+
T Consensus 117 LvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 117 LVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred EEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhccCHHHHHHHHHhhc
Confidence 999999987443333333333333 489999999999999999999875
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-12 Score=84.82 Aligned_cols=90 Identities=21% Similarity=0.185 Sum_probs=65.0
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++.++.++||||+.++...+...++.+|++++|+|+.+...... ...+..+. ..++|+++++||+|+
T Consensus 54 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~----~~~~p~ivviNK~D~ 128 (270)
T cd01886 54 SAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD----RYNVPRIAFVNKMDR 128 (270)
T ss_pred ccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCCC
Confidence 3445677889999999999999998889999999999999999987543222 22222222 256899999999998
Q ss_pred CCCCC---HHHHHHHhCC
Q 032598 87 PEALS---KEDLMEQMGL 101 (137)
Q Consensus 87 ~~~~~---~~~~~~~~~~ 101 (137)
..... ..++...++.
T Consensus 129 ~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 129 TGADFFRVVEQIREKLGA 146 (270)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 75422 3445555543
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-12 Score=89.08 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=79.9
Q ss_pred ccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-----ChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 5 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-----NLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
+.....++..+...+++.|+||+.+|-..+-....+||+.|+|+|+...+ +.....+....+...... ...|+
T Consensus 73 i~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi--~~lIV 150 (428)
T COG5256 73 IDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI--KQLIV 150 (428)
T ss_pred EEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC--ceEEE
Confidence 34445567778899999999999999988888899999999999998863 112222222222222222 23788
Q ss_pred EeeCCCCCCCCCH------HHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 80 LGNKIDKPEALSK------EDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 80 v~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
+.||+|..+-+.. .++...++...+...+++|+++||..|+|+.+
T Consensus 151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 8999999763321 22333333334445578899999999999753
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-12 Score=93.30 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=72.6
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
..+..+..++.++.++||||++++...+...++.+|++++|+|+.+....+.. ... .+.... .-.|+++++||+|+
T Consensus 97 ~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~-~l~~~l--g~~~iIvvvNKiD~ 172 (474)
T PRK05124 97 VAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHS-FIATLL--GIKHLVVAVNKMDL 172 (474)
T ss_pred eeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHH-HHHHHh--CCCceEEEEEeecc
Confidence 33445667788999999999998876666678999999999999874321111 111 111111 12478999999999
Q ss_pred CCCCC--HHHHHHHhC----CCCCCCCceeEEEeecccCCChHHH
Q 032598 87 PEALS--KEDLMEQMG----LKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 87 ~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
.+... ..++...+. .... ....+++++||++|+|+.++
T Consensus 173 ~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 173 VDYSEEVFERIREDYLTFAEQLPG-NLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHhcCC-CCCceEEEEEeecCCCcccc
Confidence 74322 222222221 1110 12467999999999998764
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-12 Score=92.15 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=80.4
Q ss_pred CCcccceeeEEEe---CCEEEEEEecCCccc-----cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCC
Q 032598 2 IPTVGFNMRKVTK---GNVTIKLWDLGGQPR-----FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 2 ~pt~~~~~~~~~~---~~~~~~~~Dt~g~~~-----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 73 (137)
+|-++..+.++.+ ...++.+.||||... ....+...++.+|.++||+|+....+..+. .....+.+. ..
T Consensus 212 ~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~--~K 288 (741)
T PRK09866 212 IPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV--GQ 288 (741)
T ss_pred CceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc--CC
Confidence 4666666666542 246899999999753 233455678999999999999875444432 122222221 12
Q ss_pred CCcEEEEeeCCCCCCCCC--HHHHHHHhCCC--CCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 74 GIPLLVLGNKIDKPEALS--KEDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+.|+++++||+|+.+... ...+...+... ........++++||++|.|++.+++.|..
T Consensus 289 ~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 289 SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 359999999999864222 22222221100 11112335899999999999999999876
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-11 Score=87.96 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=56.8
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
..+++++.++.+|||||+.++.......++.+|++++|+|+++... .....++. ... ..++|+++++||+|+..
T Consensus 73 ~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~---~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 73 MQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTR---LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHH---hcCCCEEEEEECccccC
Confidence 4577889999999999999988877788999999999999987422 12223333 222 25689999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.6e-12 Score=89.58 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=71.2
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 89 (137)
.+..++.++.+.||||+.++...+...+..+|++++|+|+...... +....+..+. . .++| +++++||+|+.+.
T Consensus 69 ~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~-~---~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAK-Q---VGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred EEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHH-H---cCCCEEEEEEEccCCCCH
Confidence 3555678899999999998887777788999999999999874322 2222232222 1 4578 6789999999753
Q ss_pred CCH-----HHHHHHhCCCCCCCCceeEEEeecccCCC
Q 032598 90 LSK-----EDLMEQMGLKSITDREVCCYMISCKNSTN 121 (137)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 121 (137)
... .++...+....+.....+++++||.+|.|
T Consensus 144 ~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 144 EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 221 23333333322223357899999999874
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=81.23 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=54.1
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+..+++|||||+..+......+++.+|++++|+|+++..+.+.. ..+..... .++|+++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCcc
Confidence 78999999999999999999999999999999999987554432 22222222 358999999999985
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=77.91 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=68.8
Q ss_pred EEEEEecCCcc----------ccHHhHHHHhcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGGQP----------RFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g~~----------~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.+.+|||||.. .+......+++. ++++++++|..+..+.... .+...+.. .+.|+++++||+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEch
Confidence 89999999943 344555556654 5688999998875332221 11112221 358999999999
Q ss_pred CCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 85 DKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 85 D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
|+............+..... .....+++++||+++.|+++++++|.+.+
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 98644332222111110000 11234689999999999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-12 Score=88.05 Aligned_cols=119 Identities=15% Similarity=0.110 Sum_probs=80.0
Q ss_pred EEEeCCEEEEEEecCCccccHHh-----------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSM-----------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.+..++-++.++||+|..+-... ....+..++.+++|+|++++-+-++.. +.......+.++++
T Consensus 220 ~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-----ia~~i~~~g~~~vI 294 (444)
T COG1160 220 EFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-----IAGLIEEAGRGIVI 294 (444)
T ss_pred eEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-----HHHHHHHcCCCeEE
Confidence 35567899999999996433221 123367899999999999875543322 22222236789999
Q ss_pred EeeCCCCCCC--CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 80 LGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 80 v~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.||+|+.+. ....+....+..........+.+.+||++|.+++++|+.+.+...
T Consensus 295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 9999998765 333333333332111123446899999999999999999887654
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.5e-11 Score=88.87 Aligned_cols=78 Identities=23% Similarity=0.183 Sum_probs=60.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++.++.+|||||+.++...+...++.+|++++|+|+.+....+.. ..+..+. ..++|+++++||+|+
T Consensus 65 ~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~ 139 (689)
T TIGR00484 65 SAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RYEVPRIAFVNKMDK 139 (689)
T ss_pred cceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCCEEEEEECCCC
Confidence 34456778899999999999999888888999999999999999886444322 2222222 246899999999998
Q ss_pred CCC
Q 032598 87 PEA 89 (137)
Q Consensus 87 ~~~ 89 (137)
...
T Consensus 140 ~~~ 142 (689)
T TIGR00484 140 TGA 142 (689)
T ss_pred CCC
Confidence 754
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-11 Score=78.94 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=53.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+...+.+|||||+.++......+++.+|++++|+|+++..+... ..++..... .++|+++++||+|+.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 35889999999999998888899999999999999988665432 223333322 358999999999975
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-13 Score=84.21 Aligned_cols=115 Identities=24% Similarity=0.294 Sum_probs=90.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCCCCCH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
-+++++||..||+++..+..-|++.+.+..+|||++..-+++-...|.+.+... ......|+++.+||||..+....
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~ 153 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN 153 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh
Confidence 377899999999999999999999999999999999999999999999887653 34567899999999998654221
Q ss_pred --HHHHHHhC-CCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 --EDLMEQMG-LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 --~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
....+.+. .. --..++++|+|.+-|+.|....+++.+.
T Consensus 154 ~~~~~~d~f~ken----gf~gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 154 EATRQFDNFKKEN----GFEGWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred hhHHHHHHHHhcc----CccceeeeccccccChhHHHHHHHHHHH
Confidence 12222222 11 1124899999999999999999998775
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=87.53 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=77.8
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~ 89 (137)
.+..++.++.+.||||+.++.......+..+|++++|+|+.+....+ ....+..+. . .++|.+ +++||+|+.+.
T Consensus 69 ~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~-~---~g~p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLAR-Q---VGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred EEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHH-H---cCCCEEEEEEeecCCcch
Confidence 34456788999999999888777777789999999999998753222 222222222 2 457876 58999999743
Q ss_pred CCH-----HHHHHHhCCCCCCCCceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 90 LSK-----EDLMEQMGLKSITDREVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
... .++...+....+...+.+++++||++|. ++..+++.|.+.+
T Consensus 144 ~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 144 EELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 221 1333333322222345779999999875 4677777777643
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9e-12 Score=85.67 Aligned_cols=116 Identities=15% Similarity=0.126 Sum_probs=79.5
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
||...++.+...+.+|.+.||||++.|...+......||..|+++|+-. .+.+..+....+.......+ +++..||
T Consensus 73 TIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLGIrh--vvvAVNK 148 (431)
T COG2895 73 TIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLGIRH--VVVAVNK 148 (431)
T ss_pred eEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhCCcE--EEEEEee
Confidence 5667778888889999999999999999999888999999999999954 33222222223333323334 7888999
Q ss_pred CCCCCCCCH--HHHHHHhCC--CCCCCCceeEEEeecccCCChH
Q 032598 84 IDKPEALSK--EDLMEQMGL--KSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 84 ~D~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
+|+.+-... .++...+.. ...+.....++++||..|+|+-
T Consensus 149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 999865432 223222211 0111224479999999999973
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=87.62 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=77.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKID 85 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D 85 (137)
.....+..++.++.++||||+.++..........+|++++|+|+.+....+ ....+..+ .. .++|. ++++||+|
T Consensus 114 ~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~-~~---~gip~iIvviNKiD 188 (447)
T PLN03127 114 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLA-RQ---VGVPSLVVFLNKVD 188 (447)
T ss_pred eeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHH-HH---cCCCeEEEEEEeec
Confidence 334445567789999999999988777777778899999999998753222 12222222 22 46784 68899999
Q ss_pred CCCCCCH-H----HHHHHhCCCCCCCCceeEEEeecc---cCCC-------hHHHHHHHHHhh
Q 032598 86 KPEALSK-E----DLMEQMGLKSITDREVCCYMISCK---NSTN-------IDTVIDWLVKHS 133 (137)
Q Consensus 86 ~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~-------v~~~~~~i~~~~ 133 (137)
+.+.... + ++.+.+....+....++++++||. +|.| +.++++.+.+.+
T Consensus 189 lv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 189 VVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 9753221 1 222222221222235678888875 4555 677888777654
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.8e-12 Score=84.00 Aligned_cols=117 Identities=19% Similarity=0.120 Sum_probs=74.6
Q ss_pred CEEEEEEecCCcccc---HHhHHHHhcc-----CCEEEEEEeCCCCCChHHHHH--HHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 16 NVTIKLWDLGGQPRF---RSMWERYCRA-----VSAIVYVVDAADYDNLPVSRS--ELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+..+.+|||||+... +..+..+++. ++++++|+|+.......+... ++...... ..++|+++++||+|
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D 173 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKAD 173 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHh
Confidence 347899999998653 4444444333 899999999977544433221 22111111 14789999999999
Q ss_pred CCCCCCHHHHHHHhCC----------C---------------CCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 86 KPEALSKEDLMEQMGL----------K---------------SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 86 ~~~~~~~~~~~~~~~~----------~---------------~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.+..........+.. . .......+++++||++++|++++.+++.+.+.
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 174 LLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9766544333332221 0 00011236899999999999999999988764
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=81.18 Aligned_cols=122 Identities=24% Similarity=0.300 Sum_probs=84.6
Q ss_pred CCcccceeeEEEeC-CEEEEEEecCCc---------cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKG-NVTIKLWDLGGQ---------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~-~~~~~~~Dt~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 71 (137)
..|.....+.+... +..+.+.||.|- +.|++..+ -...||.++.|+|++++...+.+. -...++....
T Consensus 224 FATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~ 301 (411)
T COG2262 224 FATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLHVVDASDPEILEKLE-AVEDVLAEIG 301 (411)
T ss_pred cccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHH-HHHHHHHHcC
Confidence 35666666666544 688999999884 23444332 256799999999999985444443 3344555555
Q ss_pred CCCCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 72 LNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
..++|++++.||+|+..... ...+..... ..+.+||++|+|++.+...|.+.+.
T Consensus 302 ~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~---------~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 302 ADEIPIILVLNKIDLLEDEEILAELERGSP---------NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred CCCCCEEEEEecccccCchhhhhhhhhcCC---------CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 56799999999999865433 111111110 3899999999999999999998876
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=90.88 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=71.9
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
..+..+..++.++.++||||++++...+...+..+|++++|+|+......+. ......+... ...|+++++||+|+
T Consensus 94 ~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~---~~~~iivvvNK~D~ 169 (632)
T PRK05506 94 VAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL---GIRHVVLAVNKMDL 169 (632)
T ss_pred eeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh---CCCeEEEEEEeccc
Confidence 3344566678899999999999887767777899999999999976432211 1111111111 22578899999999
Q ss_pred CCCCC--HHHHHHHhCC--CCCCCCceeEEEeecccCCChHH
Q 032598 87 PEALS--KEDLMEQMGL--KSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 87 ~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
.+... ..++...+.. ........+++++||++|+|+.+
T Consensus 170 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 170 VDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 64221 2222222210 01111245689999999999874
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-11 Score=86.28 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=72.5
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 88 (137)
..+..++.++.++||||+++|...+...+..+|++++|+|+.+....+ ..+++..+. . .++| +++++||+|+.+
T Consensus 137 ~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~-~---~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 137 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAK-Q---VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHH-H---cCCCeEEEEEecccccC
Confidence 345567889999999999999888888889999999999998753322 223333222 2 4677 678999999975
Q ss_pred CCCH-H----HHHHHhCCCCCCCCceeEEEeecccCCC
Q 032598 89 ALSK-E----DLMEQMGLKSITDREVCCYMISCKNSTN 121 (137)
Q Consensus 89 ~~~~-~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 121 (137)
.... + ++...+....+...+.+++++||.+|.+
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 3221 1 3333333222233467899999998853
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=80.75 Aligned_cols=126 Identities=18% Similarity=0.177 Sum_probs=90.3
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccH--------HhHHHHhcc-CCEEEEEEeCCC--CCChHHHHHHHHHHhcCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRA-VSAIVYVVDAAD--YDNLPVSRSELHDLLSKP 70 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~-~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~ 70 (137)
.+|-+.+++++..+..+++++||||..+.- ...-..++. +++++|++|++. .-+++.+..+++++...
T Consensus 200 FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~- 278 (346)
T COG1084 200 FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL- 278 (346)
T ss_pred ccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh-
Confidence 467789999999999999999999963221 111111333 789999999986 46788888888888765
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...|+++|+||+|........++...+.... ......+++..+.+++.+-..+...+.
T Consensus 279 --f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 279 --FKAPIVVVINKIDIADEEKLEEIEASVLEEG----GEEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred --cCCCeEEEEecccccchhHHHHHHHHHHhhc----cccccceeeeehhhHHHHHHHHHHHhh
Confidence 3389999999999986666655554443221 113577888889998888877776643
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=81.99 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=78.4
Q ss_pred eEEEeCCEEEEEEecCCccccHHhH--------HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMW--------ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
..++-+++.+.+.||+|.+...... ...+++||.+++|+|.+.+.+-.+.. .++ ....++|+++|.
T Consensus 258 e~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~-----~~~~~~~~i~v~ 331 (454)
T COG0486 258 EDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE-----LLPKKKPIIVVL 331 (454)
T ss_pred EEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH-----hcccCCCEEEEE
Confidence 3577789999999999986543322 23378899999999999863322211 111 123679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
||.|+......... ... .+..++.+||++|+|++.+.+.|.+.+.
T Consensus 332 NK~DL~~~~~~~~~--~~~------~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 332 NKADLVSKIELESE--KLA------NGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred echhcccccccchh--hcc------CCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 99999876543322 111 1225899999999999999999987764
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=73.60 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=83.6
Q ss_pred CCccc----ceeeEEEeCCEEEEEEecCC----------ccccHHhHHHHhcc---CCEEEEEEeCCCCCChHHHHHHHH
Q 032598 2 IPTVG----FNMRKVTKGNVTIKLWDLGG----------QPRFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELH 64 (137)
Q Consensus 2 ~pt~~----~~~~~~~~~~~~~~~~Dt~g----------~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~ 64 (137)
+-|.| .|+..++. .+.+.|.|| ++.+..+..+|++. ..++++++|+..+.. ..+...-
T Consensus 54 SktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~ 128 (200)
T COG0218 54 SKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMI 128 (200)
T ss_pred CCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHH
Confidence 34566 44444433 389999999 35667788888764 568888889876533 3333333
Q ss_pred HHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 65 DLLSKPSLNGIPLLVLGNKIDKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 65 ~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++.. .++|+++++||+|..+.... ..+.+.+...... ..+ ++..|+.++.|++++...|.+.+...
T Consensus 129 ~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~-~~~-~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 129 EFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD-DQW-VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred HHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc-cce-EEEEecccccCHHHHHHHHHHHhhcc
Confidence 33333 67999999999999876444 3444444432221 112 78899999999999999999887653
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=77.41 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=63.9
Q ss_pred ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHHHh---CCCCC
Q 032598 29 RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-EDLMEQM---GLKSI 104 (137)
Q Consensus 29 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~---~~~~~ 104 (137)
.++.++..+++.+|++++|+|+++...- |...+... ..++|+++|+||+|+...... ....... .....
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 3578888899999999999999875421 11222111 246899999999998644322 1111111 00000
Q ss_pred CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 105 TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 105 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
......++++||++|+|++++++.+.+.+
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 11112489999999999999999998865
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-11 Score=76.14 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=62.2
Q ss_pred cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCce
Q 032598 30 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV 109 (137)
Q Consensus 30 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 109 (137)
++.++.+.++.+|.+++|+|+.++....+. .. ..... ..++|+++++||+|+.+............. ...
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l-~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~-----~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KL-ERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKES-----EGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HH-HHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh-----CCC
Confidence 356778888899999999999875432221 11 11111 246899999999998643222221111111 123
Q ss_pred eEEEeecccCCChHHHHHHHHHhh
Q 032598 110 CCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 110 ~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++++||+++.|++++++.+.+.+
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHH
Confidence 589999999999999999998765
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-11 Score=72.27 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=66.7
Q ss_pred EEEecCCcc----ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCCHHH
Q 032598 20 KLWDLGGQP----RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP-EALSKED 94 (137)
Q Consensus 20 ~~~Dt~g~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~ 94 (137)
.++||||-. .+..-.-.....||.+++|.|++++.+.- =..+. ...+.|+|=|++|+|+. +......
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~-----pP~fa---~~f~~pvIGVITK~Dl~~~~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVF-----PPGFA---SMFNKPVIGVITKIDLPSDDANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccC-----Cchhh---cccCCCEEEEEECccCccchhhHHH
Confidence 569999963 22232333356799999999999865311 01111 22468999999999998 3334455
Q ss_pred HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 95 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
....|+..... +++++|+.+|+|+++|.+.|-
T Consensus 111 a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 111 AKKWLKNAGVK----EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHcCCC----CeEEEECCCCcCHHHHHHHHh
Confidence 55555443332 379999999999999998874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=78.51 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=61.6
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+..++..+++|||||..++...+...++.+|++++|+|+++....... ..+..+. ..++|.++++||
T Consensus 51 ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~----~~~~p~iivvNK 125 (268)
T cd04170 51 SISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTE-KLWEFAD----EAGIPRIIFINK 125 (268)
T ss_pred cccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEEC
Confidence 34445556778899999999999998888888999999999999999986543322 2222222 246899999999
Q ss_pred CCCCCC
Q 032598 84 IDKPEA 89 (137)
Q Consensus 84 ~D~~~~ 89 (137)
+|+...
T Consensus 126 ~D~~~~ 131 (268)
T cd04170 126 MDRERA 131 (268)
T ss_pred CccCCC
Confidence 998765
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-11 Score=84.70 Aligned_cols=132 Identities=22% Similarity=0.347 Sum_probs=97.2
Q ss_pred CCcccceeeEEEe-CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCC
Q 032598 2 IPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKP 70 (137)
Q Consensus 2 ~pt~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 70 (137)
.+|.|+....+.. ++..+.++|++|+...+..|.+++.+.++++||+++++.+ .+.+....+..+....
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 4788888888888 9999999999999999999999999999999999987532 2556667788888877
Q ss_pred CCCCCcEEEEeeCCCCCC----CCC----------------HH----HHHHHhCCCCCCC---CceeEEEeecccCCChH
Q 032598 71 SLNGIPLLVLGNKIDKPE----ALS----------------KE----DLMEQMGLKSITD---REVCCYMISCKNSTNID 123 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~----~~~----------------~~----~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~ 123 (137)
...+.|++|++||.|+-. ..+ .. -+...+....... +.+.++.++|.+.+++.
T Consensus 300 ~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~ 379 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR 379 (389)
T ss_dssp GGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred ccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence 778999999999999521 111 11 1222222111112 67788999999999999
Q ss_pred HHHHHHHHhh
Q 032598 124 TVIDWLVKHS 133 (137)
Q Consensus 124 ~~~~~i~~~~ 133 (137)
.+|+.+.+.+
T Consensus 380 ~v~~~v~~~i 389 (389)
T PF00503_consen 380 KVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcCcC
Confidence 9999987754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=75.66 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=77.9
Q ss_pred CcccceeeEEE-eCCEEEEEEecCCccccHH-----hHHHHhccCCEEEEEEeCCCCCChHHHHH---HHHHHhcCCCCC
Q 032598 3 PTVGFNMRKVT-KGNVTIKLWDLGGQPRFRS-----MWERYCRAVSAIVYVVDAADYDNLPVSRS---ELHDLLSKPSLN 73 (137)
Q Consensus 3 pt~~~~~~~~~-~~~~~~~~~Dt~g~~~~~~-----~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~ 73 (137)
||+......+. .+...+++||+||+..+-. .....++++.++|+|+|+.+.+-.+++.. .+..+.+. .+
T Consensus 33 ~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp 110 (232)
T PF04670_consen 33 PTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--SP 110 (232)
T ss_dssp ---SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH--ST
T ss_pred CcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh--CC
Confidence 56666666665 4578999999999975533 46777899999999999995543333333 23333222 37
Q ss_pred CCcEEEEeeCCCCCCCCCHH--------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKE--------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++.+.++.+|+|+....... .+.+.+.... ...+.++.||-.+ +.+-+++..++..+.
T Consensus 111 ~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~--~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 111 NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG--IEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT---TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc--ccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 88999999999987543322 2222222111 1146788999886 689999998887764
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-11 Score=75.31 Aligned_cols=84 Identities=27% Similarity=0.347 Sum_probs=55.4
Q ss_pred CCEEEEEEecCCccccHHhHHHH---hccCCEEEEEEeCCC-CCChHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERY---CRAVSAIVYVVDAAD-YDNLPVSRSELHDLLSKP--SLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~---~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.++|+||+.+.+...... ...+.++|||+|++. .....+..+++..++... ....+|+++++||.|+..
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 34579999999999888655554 788999999999974 334555556665555432 246799999999999988
Q ss_pred CCCHHHHHHH
Q 032598 89 ALSKEDLMEQ 98 (137)
Q Consensus 89 ~~~~~~~~~~ 98 (137)
..+...+...
T Consensus 127 A~~~~~Ik~~ 136 (181)
T PF09439_consen 127 AKPPKKIKKL 136 (181)
T ss_dssp ---HHHHHHH
T ss_pred cCCHHHHHHH
Confidence 7665444333
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-09 Score=80.32 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=84.4
Q ss_pred ccceeeEEEeCCEEEEEEecCCcccc------HHhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 5 VGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Dt~g~~~~------~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
++-...++..++.++++.|.||..+. ....++|+. ..|.++.|+|+++.+.-- ...-+++. .+.|
T Consensus 38 VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnL---yltlQLlE----~g~p 110 (653)
T COG0370 38 VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNL---YLTLQLLE----LGIP 110 (653)
T ss_pred EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHH---HHHHHHHH----cCCC
Confidence 33444456677888999999997433 345555653 479999999999854322 22223332 5789
Q ss_pred EEEEeeCCCCCCC----CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++.|++|..+. .+.+++.+.++.+ ++++||++|+|++++...+.+...
T Consensus 111 ~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvP--------Vv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 111 MILALNMIDEAKKRGIRIDIEKLSKLLGVP--------VVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred eEEEeccHhhHHhcCCcccHHHHHHHhCCC--------EEEEEeecCCCHHHHHHHHHHhcc
Confidence 9999999998765 3457788888764 999999999999999999987654
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-09 Score=80.49 Aligned_cols=77 Identities=21% Similarity=0.173 Sum_probs=57.8
Q ss_pred eeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+..++.+++++||||+.++.......++.+|++++|+|+...-..+.. ..+..+. ..++|+++++||+|+.
T Consensus 66 ~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~----~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 66 AATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQAD----KYKVPRIAFVNKMDRT 140 (693)
T ss_pred cEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHH----HcCCCEEEEEECCCCC
Confidence 3445677899999999999998887788889999999999998875433322 2222222 2568999999999987
Q ss_pred CC
Q 032598 88 EA 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 141 ~~ 142 (693)
T PRK00007 141 GA 142 (693)
T ss_pred CC
Confidence 53
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=82.26 Aligned_cols=78 Identities=23% Similarity=0.188 Sum_probs=59.6
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++.++.++||||+.++...+...++.+|++++|+|+.+....+.. ..+..+. ..++|+++++||+|+
T Consensus 63 ~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~----~~~~p~iv~iNK~D~ 137 (691)
T PRK12739 63 SAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD----KYGVPRIVFVNKMDR 137 (691)
T ss_pred ceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECCCC
Confidence 44456777899999999999998888888899999999999999876433222 2222222 256899999999999
Q ss_pred CCC
Q 032598 87 PEA 89 (137)
Q Consensus 87 ~~~ 89 (137)
...
T Consensus 138 ~~~ 140 (691)
T PRK12739 138 IGA 140 (691)
T ss_pred CCC
Confidence 864
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-10 Score=79.21 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=63.5
Q ss_pred hHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeE
Q 032598 33 MWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 111 (137)
Q Consensus 33 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (137)
+.+..++++|.+++|+|+.++. ....+.+++..+. ..++|+++|+||+|+.+..........+.. .+..+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-----~g~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQ-----WGYQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHh-----cCCeE
Confidence 3344588999999999998765 4445566665442 257999999999999754322333333321 12358
Q ss_pred EEeecccCCChHHHHHHHHH
Q 032598 112 YMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 112 ~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+++||++++|++++++.+..
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEEcCCCCCHHHHhhhhcc
Confidence 99999999999999998864
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=76.90 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=82.5
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKID 85 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 85 (137)
..++..+.++..+.|+|+||++++-+.+-..+...|..++|+++++.-..+ ....-.+++. -+++ -+++++|+|
T Consensus 40 lg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~q--tgEhL~iLdl---lgi~~giivltk~D 114 (447)
T COG3276 40 LGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQ--TGEHLLILDL---LGIKNGIIVLTKAD 114 (447)
T ss_pred eeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchh--hHHHHHHHHh---cCCCceEEEEeccc
Confidence 334444445669999999999999988888899999999999997632111 1222223333 2233 499999999
Q ss_pred CCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 86 KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..+.....+..+.+..... ..+.+++.+|+++|+|++++-+.|.+..
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 9865433322222221111 3455689999999999999999999877
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=74.20 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=80.1
Q ss_pred ceeeEEE-eCCEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCCCC---ChHHHHHHHHHHhcC-CCCCC
Q 032598 7 FNMRKVT-KGNVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAADYD---NLPVSRSELHDLLSK-PSLNG 74 (137)
Q Consensus 7 ~~~~~~~-~~~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~ 74 (137)
.+...+. ..+-.|.+.|.||.-... ......++.+..+++|+|++..+ ..++......++..+ ....+
T Consensus 196 PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~ 275 (369)
T COG0536 196 PNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAE 275 (369)
T ss_pred CcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhcc
Confidence 3333444 456679999999964322 12233467799999999998654 344444444444443 34578
Q ss_pred CcEEEEeeCCCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.|.++++||+|+... +..+.+...+.... .....+.+||.+++|++++...+.+.+.+
T Consensus 276 K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~---~~~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 276 KPRIVVLNKIDLPLDEEELEELKKALAEAL---GWEVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred CceEEEEeccCCCcCHHHHHHHHHHHHHhc---CCCcceeeehhcccCHHHHHHHHHHHHHH
Confidence 999999999996544 23344444443210 01112229999999999999999887764
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=75.53 Aligned_cols=117 Identities=25% Similarity=0.382 Sum_probs=84.1
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+.++++.+++.||||+.+|-...+..++=.|++++++|+.+.. ..+.+..+...+. .+.+-|+|.||+|.+..++
T Consensus 63 v~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 63 VNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARP 137 (603)
T ss_pred eecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCH
Confidence 6788999999999999999999999999999999999999853 3333444444433 4566799999999988765
Q ss_pred H---HHHHHHhCCCCCCC--CceeEEEeecccCC----------ChHHHHHHHHHhh
Q 032598 92 K---EDLMEQMGLKSITD--REVCCYMISCKNST----------NIDTVIDWLVKHS 133 (137)
Q Consensus 92 ~---~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 133 (137)
. .+..+.+-...... -.++++..||+.|. ++.-||+.|.+.+
T Consensus 138 ~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 138 DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 3 33334332222221 24667888988773 4677888877654
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-09 Score=71.30 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=75.0
Q ss_pred eEEEeCCEEEEEEecCCcccc------H------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 10 RKVTKGNVTIKLWDLGGQPRF------R------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~------~------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
..+..+..++.|+||||.-.- . ....+.+..||.++.|+|+++....-.. ..+..+-. .+++|-
T Consensus 113 gi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~---ys~ips 188 (379)
T KOG1423|consen 113 GIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEE---YSKIPS 188 (379)
T ss_pred EEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHH---HhcCCc
Confidence 345677899999999995211 1 1122336679999999999974332211 12222222 267899
Q ss_pred EEEeeCCCCCCCCCH-----------------HHHHHHhCCCCCC-----CCce----eEEEeecccCCChHHHHHHHHH
Q 032598 78 LVLGNKIDKPEALSK-----------------EDLMEQMGLKSIT-----DREV----CCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~-----~~~~----~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
++|.||.|....... -++.+.+...... .-+| .+|.+||++|+|++++-++|..
T Consensus 189 ~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLms 268 (379)
T KOG1423|consen 189 ILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMS 268 (379)
T ss_pred eeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHh
Confidence 999999997654321 0112222111100 0012 3799999999999999999987
Q ss_pred hhh
Q 032598 132 HSK 134 (137)
Q Consensus 132 ~~~ 134 (137)
.+.
T Consensus 269 qa~ 271 (379)
T KOG1423|consen 269 QAP 271 (379)
T ss_pred cCC
Confidence 764
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-10 Score=80.99 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=89.5
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccH----HhHHHH-----hccCCEEEEEEeCCC--CCChHHHHHHHHHHhcCCC
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFR----SMWERY-----CRAVSAIVYVVDAAD--YDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~----~~~~~~-----~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~ 71 (137)
+|-+.-+.++++.-..+++.||||..+.- ..++.. ..--.++++++|++. ..|+.+...+++.+...
T Consensus 201 TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-- 278 (620)
T KOG1490|consen 201 TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-- 278 (620)
T ss_pred ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--
Confidence 45556666777777889999999964321 111111 122457889999886 57888888888888543
Q ss_pred CCCCcEEEEeeCCCCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 72 LNGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+.+.|+|+|+||+|+....... ++.+.+.. ..+++++++|..+.+|+.++-...++.+..
T Consensus 279 FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~----~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 279 FANKVTILVLNKIDAMRPEDLDQKNQELLQTIID----DGNVKVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred hcCCceEEEeecccccCccccCHHHHHHHHHHHh----ccCceEEEecccchhceeeHHHHHHHHHHH
Confidence 5789999999999987655442 33333332 234679999999999999998888887764
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-10 Score=78.96 Aligned_cols=98 Identities=27% Similarity=0.344 Sum_probs=65.0
Q ss_pred CccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHHH----hC
Q 032598 26 GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKEDLMEQ----MG 100 (137)
Q Consensus 26 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~----~~ 100 (137)
..+++..+...+.+.++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+.... ....+... .+
T Consensus 49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 49 NDDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAK 121 (360)
T ss_pred CHHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHH
Confidence 356788888888899999999999987542 2223332221 367999999999986532 22222211 11
Q ss_pred CCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 101 LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 101 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
.. +.....++.+||++|.|++++++.+.+.
T Consensus 122 ~~--g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 EL--GLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred Hc--CCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11 0001138899999999999999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-10 Score=75.45 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=102.4
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 71 (137)
.||.|+.-+.++.+++.+.+.|.+|+...+..|-+++.+.-.+++++..+. ....++...++..+....+
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 589999988999999999999999999999999999998877777766553 2345666778888888889
Q ss_pred CCCCcEEEEeeCCCCCCCCCH-----------------HH-----HHHHhC-CCCCCCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEALSK-----------------ED-----LMEQMG-LKSITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~-----------------~~-----~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
+.+.++|++.||.|+.+..-. .+ +...+- ......+.+..+.++|.+.+|+..+|..
T Consensus 264 F~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 264 FQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAA 343 (359)
T ss_pred ccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHH
Confidence 999999999999998764221 01 111111 1122234455688999999999999999
Q ss_pred HHHhhhhc
Q 032598 129 LVKHSKSK 136 (137)
Q Consensus 129 i~~~~~~~ 136 (137)
+-..+.+.
T Consensus 344 VkDtiLq~ 351 (359)
T KOG0085|consen 344 VKDTILQL 351 (359)
T ss_pred HHHHHHHh
Confidence 88877654
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-09 Score=73.95 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=61.7
Q ss_pred hccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 38 CRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++++||+|+.+............. .+..++.+||
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~g~~v~~vSA 146 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALA-----LGYPVLAVSA 146 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHh-----CCCeEEEEEC
Confidence 77899999999999887 77777777765543 46899999999999654211111111111 1346899999
Q ss_pred ccCCChHHHHHHHHH
Q 032598 117 KNSTNIDTVIDWLVK 131 (137)
Q Consensus 117 ~~~~~v~~~~~~i~~ 131 (137)
+++.|+++++..+..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999988753
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.2e-10 Score=80.00 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=88.1
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKP-SLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~ 91 (137)
-+.+...+.||+..+.-+.....-+++|+++.+|++.+++.+++.+. .|+..+.+.. ..-++|+|+|+||.|......
T Consensus 53 Pe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 53 PENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred cCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 45677899999988877777788899999999999999999999876 6998887753 235799999999999876544
Q ss_pred H------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 92 K------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 92 ~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
. ..+..++.... .+++|||++..++.++|.-.-+++
T Consensus 133 ~s~e~~~~pim~~f~EiE------tciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 133 NSDEVNTLPIMIAFAEIE------TCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred cchhHHHHHHHHHhHHHH------HHHhhhhhhhhhhHhhhhhhhhee
Confidence 3 12333333221 279999999999999998766554
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=72.44 Aligned_cols=86 Identities=23% Similarity=0.281 Sum_probs=64.3
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
-.+++.+..+++.||||+++|..-...-+.-+|..++|+|+...-..+ ..++++-+. ..++|++-++||+|....
T Consensus 74 MqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfeVcr----lR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 74 MQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFEVCR----LRDIPIFTFINKLDREGR 148 (528)
T ss_pred EEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHH-HHHHHHHHh----hcCCceEEEeeccccccC
Confidence 357789999999999999999877777788899999999998753222 334555553 378999999999998664
Q ss_pred CCH---HHHHHHhC
Q 032598 90 LSK---EDLMEQMG 100 (137)
Q Consensus 90 ~~~---~~~~~~~~ 100 (137)
.+. +++.+.|+
T Consensus 149 dP~ELLdEiE~~L~ 162 (528)
T COG4108 149 DPLELLDEIEEELG 162 (528)
T ss_pred ChHHHHHHHHHHhC
Confidence 442 34444443
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-08 Score=69.06 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=37.6
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHH-HHHHhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID-WLVKHS 133 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~-~i~~~~ 133 (137)
.+|+++++||.|+..... ....+... .....++++||+.+.+++++.+ .+.+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~---~~~~l~~~---~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 214 SKPMVIAANKADIPDAEN---NISKLRLK---YPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CCcEEEEEEHHHccChHH---HHHHHHhh---CCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 579999999999753322 22222111 1134689999999999999997 587765
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=67.43 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=62.7
Q ss_pred CCc-cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCC
Q 032598 25 GGQ-PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 103 (137)
Q Consensus 25 ~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 103 (137)
||+ .+........++.+|.+++|+|+.++...... ..... ..+.|+++++||+|+.+........+.+...
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~------~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~- 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI------LGNKPRIIVLNKADLADPKKTKKWLKYFESK- 74 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH------hcCCCEEEEEehhhcCChHHHHHHHHHHHhc-
Confidence 444 23445566778999999999999876432211 11111 1357899999999996432222222222211
Q ss_pred CCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 104 ITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 104 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...++.+||++++|++++.+.+.+.+
T Consensus 75 ----~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 ----GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ----CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 12478999999999999999988764
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-09 Score=66.00 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=58.7
Q ss_pred HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 37 YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 37 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
.++.+|.+++|+|+.++..... ..+...+.. ...++|+++|+||+|+.+..........+... . ....+++||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~-~---~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKE-Y---PTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcC-C---cEEEEEeec
Confidence 4678999999999998632211 222222222 12468999999999996543333334444321 1 122588999
Q ss_pred ccCCChHHHHHHHHHhh
Q 032598 117 KNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 117 ~~~~~v~~~~~~i~~~~ 133 (137)
+.+.|++++++.+.+..
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999997654
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=71.76 Aligned_cols=132 Identities=19% Similarity=0.257 Sum_probs=93.4
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~ 73 (137)
|.|+...++....++++++|.+||.+-+..|-.++...-+++||+..++.. .+++.-.++..+.+..+..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 345555667788999999999999999999999999999999999988532 2344445666666666667
Q ss_pred CCcEEEEeeCCCCCCCCCH---HHHHHHh----------------------------------CC---CCCCCCceeEEE
Q 032598 74 GIPLLVLGNKIDKPEALSK---EDLMEQM----------------------------------GL---KSITDREVCCYM 113 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~---~~~~~~~----------------------------------~~---~~~~~~~~~~~~ 113 (137)
.+.+|++.||.|+...... ..+.+.+ .. .......|.+++
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 7899999999997432100 0011111 00 011133566789
Q ss_pred eecccCCChHHHHHHHHHhhhh
Q 032598 114 ISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 114 ~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|.+.+|+..+|+..-..+..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999988777654
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.6e-09 Score=71.11 Aligned_cols=118 Identities=23% Similarity=0.171 Sum_probs=80.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCCCCC-hHHHHHHHHHH------------
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAADYDN-LPVSRSELHDL------------ 66 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~------------ 66 (137)
..-..+.+++.++++.|+||.-... ...-...+.||.+++|+|+..... .+.+.+.++..
T Consensus 100 ~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~ 179 (365)
T COG1163 100 PVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVT 179 (365)
T ss_pred cccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceE
Confidence 3334567899999999999864322 223344789999999999986543 32333333311
Q ss_pred ----------------------------hcC------------------------CCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 67 ----------------------------LSK------------------------PSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 67 ----------------------------~~~------------------------~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
+.. .+...+|.+++.||+|+........
T Consensus 180 I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~ 259 (365)
T COG1163 180 IKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELER 259 (365)
T ss_pred EEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHH
Confidence 000 0012589999999999987444444
Q ss_pred HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 95 LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.+.. ..+++||+.+.|++++.+.|.+.+.
T Consensus 260 l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 260 LARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred HHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 44433 3899999999999999999988764
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-09 Score=72.71 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=62.7
Q ss_pred ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHHhCCCCCCCCceeEEEee
Q 032598 39 RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMIS 115 (137)
Q Consensus 39 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S 115 (137)
.++|.+++|++.....++..+.+|+..+. ..++|.++++||+|+...... ......+.. .+..++++|
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-----~g~~v~~vS 189 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-----IGYRVLMVS 189 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-----CCCeEEEEe
Confidence 56999999999887788888888876442 257899999999999754321 222222211 134689999
Q ss_pred cccCCChHHHHHHHHHh
Q 032598 116 CKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 116 a~~~~~v~~~~~~i~~~ 132 (137)
|++++|++++++.+...
T Consensus 190 A~tg~GideL~~~L~~k 206 (347)
T PRK12288 190 SHTGEGLEELEAALTGR 206 (347)
T ss_pred CCCCcCHHHHHHHHhhC
Confidence 99999999999998754
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=72.19 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=79.2
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---- 92 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---- 92 (137)
..+.|.|.||++-.-+.+.....--|+.++|+++.++-+..+..+.+..+ ... .-..++++-||+|+...+..
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHH
Confidence 46899999999877666655555679999999999864444444444433 221 22458999999999765332
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++.- -..+.+++++||..+.|++-+++.|.+.+-
T Consensus 163 ~qIk~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 163 EQIKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 3333333321 123567999999999999999999988763
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-09 Score=77.40 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=77.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-----C-
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-----L- 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~- 90 (137)
--+.++||||++.|..++...-.-||..|+|+|+...-..+.+. -+. ..+..+.|+|+.+||+|..-. .
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~----lLR~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SIN----LLRMRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhH-HHH----HHHhcCCCeEEeehhhhhhcccccCCCc
Confidence 34788999999999999998899999999999998742222111 112 223368999999999995321 1
Q ss_pred CH-------------------HHHHHHhCCCC------CC----CCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 91 SK-------------------EDLMEQMGLKS------IT----DREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 91 ~~-------------------~~~~~~~~~~~------~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+. ..+...|.... +. ...+.++++||-+|+|+-+|+.+|++...
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 10 11222222111 11 23467899999999999999999998764
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-09 Score=72.27 Aligned_cols=84 Identities=23% Similarity=0.180 Sum_probs=58.4
Q ss_pred hccCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEee
Q 032598 38 CRAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMIS 115 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~S 115 (137)
..++|.+++|+|+.++.+... +.+|+..+.. .++|+++++||+|+.+... .......+.. .+..++++|
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-----~g~~v~~vS 148 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYRA-----IGYDVLELS 148 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH-----CCCeEEEEe
Confidence 478999999999988765443 4566555432 5789999999999963221 1122222211 124689999
Q ss_pred cccCCChHHHHHHHH
Q 032598 116 CKNSTNIDTVIDWLV 130 (137)
Q Consensus 116 a~~~~~v~~~~~~i~ 130 (137)
|++++|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998775
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.5e-09 Score=74.83 Aligned_cols=111 Identities=20% Similarity=0.126 Sum_probs=75.0
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---Ch--HHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL--PVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++.....+++.|+||+..|.+.+-....+||+.++|+|++-.. +| ....+....+++.... ..+++++||+|
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi--~qlivaiNKmD 326 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI--SQLIVAINKMD 326 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc--ceEEEEeeccc
Confidence 45566789999999999999998888899999999999998421 11 1112222333333332 34789999999
Q ss_pred CCCCC--CHHHHHHHh-----CCCCCCCCceeEEEeecccCCChH
Q 032598 86 KPEAL--SKEDLMEQM-----GLKSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 86 ~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
+.+=. ..+++...+ ....+....+.|++||+..|+|+-
T Consensus 327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 86532 223333333 223344557789999999999963
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=69.97 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCcc-ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCC
Q 032598 25 GGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 103 (137)
Q Consensus 25 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 103 (137)
||+. +........++.+|.+++|+|+.++.+... ..+.... .+.|+++|.||+|+.+........+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 5653 334456667889999999999987644322 1222222 35799999999999643222222223321
Q ss_pred CCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 104 ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 104 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
....++.+||+++.|++++.+.+.+.+.
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 1124799999999999999998887654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=63.72 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=53.2
Q ss_pred CEEEEEEeCCCCCChHHHHHHHH-HHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCC
Q 032598 42 SAIVYVVDAADYDNLPVSRSELH-DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120 (137)
Q Consensus 42 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 120 (137)
|.+++|+|+.++.+... .++. .... ..++|+++++||+|+.+..........+... ....++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 67899999988754432 2222 1222 2568999999999996432222222222211 02247899999999
Q ss_pred ChHHHHHHHHHh
Q 032598 121 NIDTVIDWLVKH 132 (137)
Q Consensus 121 ~v~~~~~~i~~~ 132 (137)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=76.03 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=54.6
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+++++.++.+|||||+.++.......++.+|++++|+|+.+....+....+ .... ..++|.++++||+|...
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH----HcCCCEEEEEEChhccc
Confidence 556789999999999999988888899999999999999875332222112 2221 14578899999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.8e-08 Score=73.87 Aligned_cols=87 Identities=26% Similarity=0.252 Sum_probs=65.9
Q ss_pred eEEEeCC-EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 10 RKVTKGN-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~-~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.++.+++ ..++++||||+-+|.......++-+|+.+.|+|+...-..+.-.-|.+.. ..++|.+++.||+|...
T Consensus 68 ~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 68 TTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred eEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-----hcCCCeEEEEECccccc
Confidence 3456774 99999999999999999999999999999999999864444333444333 35799999999999865
Q ss_pred CC---CHHHHHHHhCC
Q 032598 89 AL---SKEDLMEQMGL 101 (137)
Q Consensus 89 ~~---~~~~~~~~~~~ 101 (137)
.. ...++...+..
T Consensus 143 a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 143 ADFYLVVEQLKERLGA 158 (697)
T ss_pred cChhhhHHHHHHHhCC
Confidence 53 34455555543
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=65.00 Aligned_cols=111 Identities=13% Similarity=0.202 Sum_probs=65.6
Q ss_pred EEEEEEecCCccccHHhHHHH-----hccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERY-----CRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.++.+|||||..........+ +..+|.+++|.+. ++..... ++..+.. .+.|+++|+||+|+....
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSN 123 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHH----hCCCEEEEEecccchhhh
Confidence 478999999975432222233 5678988887432 2333332 3333322 357899999999984321
Q ss_pred C---------HHHHHHHhCCC------CCCCCceeEEEeecc--cCCChHHHHHHHHHhhhh
Q 032598 91 S---------KEDLMEQMGLK------SITDREVCCYMISCK--NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 91 ~---------~~~~~~~~~~~------~~~~~~~~~~~~Sa~--~~~~v~~~~~~i~~~~~~ 135 (137)
. ..++...+... ........++.+|+. .+.++..+.+.|...+-+
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 1 11222221110 001123468999998 578999999999887754
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-08 Score=61.10 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=49.6
Q ss_pred HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEe
Q 032598 35 ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 114 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (137)
...++.+|++++|+|+.++.+... ..+...+... ..++|+++++||+|+.+..........+... ...++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~-~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~-----~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEV-DPRKKNILLLNKADLLTEEQRKAWAEYFKKE-----GIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhc-cCCCcEEEEEechhcCCHHHHHHHHHHHHhc-----CCeEEEE
Confidence 456788999999999988654331 1222222221 1578999999999996543333333433321 1358899
Q ss_pred ecccCCC
Q 032598 115 SCKNSTN 121 (137)
Q Consensus 115 Sa~~~~~ 121 (137)
||+++++
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998764
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-08 Score=67.61 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=65.0
Q ss_pred cCCcc-ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCC
Q 032598 24 LGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 102 (137)
Q Consensus 24 t~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 102 (137)
-||+. +........++.+|.+++|+|+.++.+... ..+.... .+.|+++|.||+|+.+........+.+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~ 79 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ 79 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc
Confidence 46663 334456667899999999999987644322 2223332 258999999999996432122233323211
Q ss_pred CCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 103 SITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 103 ~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...++.+||+++.|++++.+.+.+.+.
T Consensus 80 -----~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 80 -----GIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred -----CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 235789999999999999998877653
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-08 Score=66.81 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=60.2
Q ss_pred EEEEEecCCccccHHhHHHHh--------ccCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 18 TIKLWDLGGQPRFRSMWERYC--------RAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+.++|||||.+.-..+...- ...-++++++|+....+... +...+..+.-. ...+.|.+.+.||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 788999999976655444432 34568899999887655333 22222222211 114799999999999986
Q ss_pred CCC--------------------HHHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhh
Q 032598 89 ALS--------------------KEDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 89 ~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
... ...+...+.......... .++++|+.+++|+++++..+-+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 220 011111111101111222 699999999999999999988765
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.1e-08 Score=58.06 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=67.6
Q ss_pred EEecCCccccHHh----HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q 032598 21 LWDLGGQPRFRSM----WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM 96 (137)
Q Consensus 21 ~~Dt~g~~~~~~~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 96 (137)
.+||||..-.... .......+|.+++|-.+.++++.- .. ........|+|-+++|.|+.+........
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f------~p--~f~~~~~k~vIgvVTK~DLaed~dI~~~~ 112 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRF------PP--GFLDIGVKKVIGVVTKADLAEDADISLVK 112 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccC------Cc--ccccccccceEEEEecccccchHhHHHHH
Confidence 6799996432222 333457799999999999876511 11 12233567799999999999755555444
Q ss_pred HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 97 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
..|...... ++|.+|+.+..|+++++..+..
T Consensus 113 ~~L~eaGa~----~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 113 RWLREAGAE----PIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHcCCc----ceEEEeccCcccHHHHHHHHHh
Confidence 444432222 5999999999999999988764
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=63.88 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=75.5
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI-PLLVLGNKIDKPEA 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~ 89 (137)
.++..+..+...|+||+.+|-+.+-....+.|+.|+|+++++..-++. +.. ++- .+.-+. -++++.||+|+.+.
T Consensus 69 eyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEH---iLl-arqvGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 69 EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REH---ILL-ARQVGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred EEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhh---hhh-hhhcCCcEEEEEEecccccCc
Confidence 355667899999999999998888888889999999999998543321 111 111 112344 35777999999875
Q ss_pred CCH-----HHHHHHhCCCCCCCCceeEEEeeccc-CCC-------hHHHHHHHHHhh
Q 032598 90 LSK-----EDLMEQMGLKSITDREVCCYMISCKN-STN-------IDTVIDWLVKHS 133 (137)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~-------v~~~~~~i~~~~ 133 (137)
... .++.+.|....+.....+++..||+. .+| +.+|++.+.+.+
T Consensus 144 ~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 144 EELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 432 23344444333334456778888754 232 466666655543
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=66.51 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=70.2
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK- 92 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~- 92 (137)
..++.+.++||+|...-... ....+|.+++|.++...+.++... ..+ ..+.-++|+||+|+.+....
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi------~E~aDIiVVNKaDl~~~~~a~ 213 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGI------MELADLIVINKADGDNKTAAR 213 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhh------hhhhheEEeehhcccchhHHH
Confidence 45789999999998643322 356799999998754444433322 112 22334899999998764332
Q ss_pred ---HHHHHHhCCCCCC--CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 ---EDLMEQMGLKSIT--DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 ---~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.++...+....-. ....+++.+||++|+|++++++.+.+..
T Consensus 214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444432111 1224689999999999999999998865
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.9e-08 Score=62.24 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=63.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE--EEEeeCCCCCCC--CC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL--LVLGNKIDKPEA--LS 91 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~--ivv~nK~D~~~~--~~ 91 (137)
+....++++.|..--....+ .+ ++.++.|+|+.+.++... ... .++.. ++++||+|+... ..
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~-~l--~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~ 156 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSP-EL--ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGAD 156 (199)
T ss_pred CCCEEEEECCCCCcccccch-hh--hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhcccccccc
Confidence 45677888888421111111 11 688999999987655321 111 12223 899999999753 22
Q ss_pred HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 92 KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...+.+.++.. +...+++++||++|+|++++++++.+..+
T Consensus 157 ~~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 157 LGVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33333333221 22456999999999999999999998764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=73.20 Aligned_cols=68 Identities=22% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
.+..++++||||+.+|.......++.+|++++|+|+.+.-......-| ..+. ..++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH----HCCCCEEEEEECCccc
Confidence 367899999999999999898899999999999999876433322222 2232 2578999999999987
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-07 Score=63.02 Aligned_cols=107 Identities=13% Similarity=-0.004 Sum_probs=66.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
.++.+.+.||+|..... ...+..+|.++++.+.. +.+++......+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 47889999999964222 22466788888885443 233333333323 4577899999999976543221
Q ss_pred HHHH----hCCCCC--CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 95 LMEQ----MGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 95 ~~~~----~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.... +..... .....+++++||++++|++++++++.+..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1111 111001 11123589999999999999999998764
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.4e-08 Score=68.27 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=56.6
Q ss_pred ccHHhHHHHhccCC-EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHHhCC--CCC
Q 032598 29 RFRSMWERYCRAVS-AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQMGL--KSI 104 (137)
Q Consensus 29 ~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~--~~~ 104 (137)
.+..... .+..++ .+++|+|+.+... .|...+.+.. .+.|+++|+||+|+..... ...+...+.. ...
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCCC-----chhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 4444433 344445 8999999988532 2222332221 3678999999999965322 2222111100 000
Q ss_pred CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 105 TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 105 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+.....++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 00111478999999999999999997653
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-07 Score=72.03 Aligned_cols=67 Identities=24% Similarity=0.265 Sum_probs=52.7
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+..+.++||||+.++.......++.+|++++|+|+.+.-..+.. ..+..+.. .++|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH----cCCCEEEEEEChhhh
Confidence 67899999999999988888889999999999999885333322 22233322 468999999999987
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-07 Score=70.32 Aligned_cols=69 Identities=26% Similarity=0.261 Sum_probs=52.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
++..+.++||||+.++.......++.+|++++|+|+......+.. ..+..... .++|.++++||+|+..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHHH----cCCCeEEEEECchhhc
Confidence 578999999999999988888899999999999999875333222 22222222 3467899999999763
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=62.43 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHH-HHHHHHHh
Q 032598 74 GIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT-VIDWLVKH 132 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~-~~~~i~~~ 132 (137)
.+|+++++||.|...... ...+.+. ....++++||+.+.++++ +.+.+.+.
T Consensus 217 ~KPvI~VlNK~D~~~~~~~l~~i~~~--------~~~~vvpISA~~e~~l~~~l~~~i~~~ 269 (396)
T PRK09602 217 SKPMVIAANKADLPPAEENIERLKEE--------KYYIVVPTSAEAELALRRAAKAGLIDY 269 (396)
T ss_pred CCCEEEEEEchhcccchHHHHHHHhc--------CCCcEEEEcchhhhhHHHHHHHhHHhh
Confidence 589999999999753222 2222222 123489999999999988 66666554
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-07 Score=60.24 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=70.9
Q ss_pred CCEEEEEEecCCcc-cc-----HHhHHHHhcc--CCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQP-RF-----RSMWERYCRA--VSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~-~~-----~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+.+..-++|||||- .| .+.+-..+.. --.+++|+|.....+..... ..+-++. ..-....|++++.||+|
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS-ilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS-ILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH-HHHhccCCeEEEEeccc
Confidence 34678899999983 22 1222222332 45777888865544333222 2222221 11225799999999999
Q ss_pred CCCCCCH-------HHHHHHhCCCC--C--------------CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 86 KPEALSK-------EDLMEQMGLKS--I--------------TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 86 ~~~~~~~-------~~~~~~~~~~~--~--------------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+.+..-. +.+.+.++... . -.+.+..+-+||.+|+|.+++|..+-+.+.+
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9875322 22222222100 0 1245668999999999999999999887754
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-06 Score=61.60 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=74.3
Q ss_pred EEEeCCEEEEEEecCCccc-cH--------HhHHHHhccCCEEEEEEeC--CCCCChHHHHHHHHHHhc-----CCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPR-FR--------SMWERYCRAVSAIVYVVDA--ADYDNLPVSRSELHDLLS-----KPSLNG 74 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~-~~--------~~~~~~~~~~~~~i~v~d~--~~~~~~~~~~~~~~~~~~-----~~~~~~ 74 (137)
.++..++.+.+.||+|... .. ......++.||.+++|+|+ ++.++...+.+.++..-. ......
T Consensus 310 ~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~ 389 (531)
T KOG1191|consen 310 QVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEK 389 (531)
T ss_pred EeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccc
Confidence 3667899999999999755 11 1223337789999999999 333332222222222211 112234
Q ss_pred CcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCcee-EEEeecccCCChHHHHHHHHHhhh
Q 032598 75 IPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVC-CYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.|++++.||.|+....+ .......+... ......+ ..++|+++++|++.|...+.+.+.
T Consensus 390 ~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 390 QRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred cceEEEechhhccCccccccCCceecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 78999999999976622 11111111111 1111223 456999999999999999987764
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-06 Score=60.62 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=55.8
Q ss_pred hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecc
Q 032598 38 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 117 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 117 (137)
..++|.+++|+++........+.+++..+. ..++|.++++||+|+.+. .......+... .....++.+||+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~----~~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAW----ESGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHH----HcCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 467899999999964444444545544432 257788999999999754 21111222111 123458999999
Q ss_pred cCCChHHHHHHHH
Q 032598 118 NSTNIDTVIDWLV 130 (137)
Q Consensus 118 ~~~~v~~~~~~i~ 130 (137)
+++|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998874
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=57.79 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=61.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 93 (137)
+..+.+.+|.|.-.... .+-...+..+.|+|..+.+.... . ... ....|.++++||+|+.+... ..
T Consensus 102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHccccchhhHH
Confidence 45778888888311111 11123455567888876442111 1 011 13467899999999975422 22
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+....+... .+..+++++||++|+|++++++++.+..
T Consensus 170 ~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 333333211 1245699999999999999999998754
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=58.45 Aligned_cols=99 Identities=8% Similarity=0.013 Sum_probs=57.7
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCCCCCC-
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKPEALS- 91 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~- 91 (137)
.++.++.++||||.. .......+.+|.+++|+|++........ ..+..+ .. .+.|. ++++||+|+.+...
T Consensus 80 ~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~ 151 (225)
T cd01882 80 GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETF-EFLNIL-QV---HGFPRVMGVLTHLDLFKKNKT 151 (225)
T ss_pred cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHH-HHHHHH-HH---cCCCeEEEEEeccccCCcHHH
Confidence 467889999999864 2223456889999999999865433221 222222 21 35675 45999999864322
Q ss_pred HHHHHHHhCC--CCCCCCceeEEEeecccCC
Q 032598 92 KEDLMEQMGL--KSITDREVCCYMISCKNST 120 (137)
Q Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~ 120 (137)
..+....+.. ........+++.+||++.-
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 152 LRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 2222222211 0000123479999998763
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.2e-07 Score=61.52 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=69.3
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 93 (137)
++..++++.|+||+......+-...+-.|..++|+|.......+...-+ -.-.......++|.||+|...+....
T Consensus 67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL-----iig~~~c~klvvvinkid~lpE~qr~ 141 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL-----IIGELLCKKLVVVINKIDVLPENQRA 141 (522)
T ss_pred cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhh-----hhhhhhccceEEEEeccccccchhhh
Confidence 4678999999999977666555556668999999999875322211111 11111345578889999875543221
Q ss_pred --------HHHHHhCCCCCCCCceeEEEeecccC----CChHHHHHHHHHhh
Q 032598 94 --------DLMEQMGLKSITDREVCCYMISCKNS----TNIDTVIDWLVKHS 133 (137)
Q Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~Sa~~~----~~v~~~~~~i~~~~ 133 (137)
.....+..-.. ..+.+++++||+.| +++.++.+.+-+.+
T Consensus 142 ski~k~~kk~~KtLe~t~f-~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGF-DGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred hHHHHHHHHHHHHHHhcCc-CCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 12222221111 12467999999999 56666666555444
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.9e-06 Score=48.81 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=45.6
Q ss_pred ceeeEEEeCCEEEEEEecCCcccc---------HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~---------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
..+..+...+..+.++||||.... .......+..+|++++|+|+++.. -+.....+..+ . .+.|+
T Consensus 37 ~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~-~~~~~~~~~~l----~-~~~~~ 110 (116)
T PF01926_consen 37 PVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPI-TEDDKNILREL----K-NKKPI 110 (116)
T ss_dssp EEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHS-HHHHHHHHHHH----H-TTSEE
T ss_pred eeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHH----h-cCCCE
Confidence 333455667889999999996432 111233357899999999977621 12222333333 2 67999
Q ss_pred EEEeeC
Q 032598 78 LVLGNK 83 (137)
Q Consensus 78 ivv~nK 83 (137)
++|+||
T Consensus 111 i~v~NK 116 (116)
T PF01926_consen 111 ILVLNK 116 (116)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.7e-06 Score=58.38 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=71.8
Q ss_pred CEEEEEEecCCccccHH-hHHHH-hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH
Q 032598 16 NVTIKLWDLGGQPRFRS-MWERY-CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~-~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 93 (137)
+--+.+.||.|+++|-. .++.. -++.|..++++.+++..+- ..+..-.+ .....+|++++.+|+|+......+
T Consensus 200 DklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tkEHLgi---~~a~~lPviVvvTK~D~~~ddr~~ 274 (527)
T COG5258 200 DKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTKEHLGI---ALAMELPVIVVVTKIDMVPDDRFQ 274 (527)
T ss_pred ccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhhHhhhh---hhhhcCCEEEEEEecccCcHHHHH
Confidence 45689999999998854 33333 3669999999999885432 12222222 223679999999999998764432
Q ss_pred ----HHHHHhCCC---C----------------CCCC-ceeEEEeecccCCChHHHHHHHHHh
Q 032598 94 ----DLMEQMGLK---S----------------ITDR-EVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 94 ----~~~~~~~~~---~----------------~~~~-~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
++...|+.. . ...+ -.+++.+|+.+|+|++-+.+-+...
T Consensus 275 ~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 275 GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 233333210 0 0112 4678999999999987666555443
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-07 Score=67.32 Aligned_cols=86 Identities=26% Similarity=0.217 Sum_probs=66.7
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA- 89 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~- 89 (137)
.+++++.+++++||||+.+|+-..+.+++-.||++.|+|.+..-..+.+.-|.+ ....++|.+.+.||+|....
T Consensus 96 ~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 96 NFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred ecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhhhhh
Confidence 577899999999999999999999999999999999999987644444444532 23457999999999998654
Q ss_pred --CCHHHHHHHhCC
Q 032598 90 --LSKEDLMEQMGL 101 (137)
Q Consensus 90 --~~~~~~~~~~~~ 101 (137)
..++.+.+.++.
T Consensus 171 fe~avdsi~ekl~a 184 (753)
T KOG0464|consen 171 FENAVDSIEEKLGA 184 (753)
T ss_pred hhhHHHHHHHHhCC
Confidence 234556666653
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-05 Score=52.18 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=70.4
Q ss_pred cceeeEEEeCCEEEEEEecCCccccH-------HhHHH----HhccCCEEEEEEeCCCCCChHH--HHHHHHHHhcCCCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWER----YCRAVSAIVYVVDAADYDNLPV--SRSELHDLLSKPSL 72 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~-------~~~~~----~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~ 72 (137)
..+.......+.++.++||||-.... ..... ...+.+++++|+++.. .+..+ ...++...... .
T Consensus 38 ~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~--~ 114 (196)
T cd01852 38 TCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGE--K 114 (196)
T ss_pred ccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhCh--H
Confidence 34445555678899999999964321 11111 1356899999999887 33222 22333333221 1
Q ss_pred CCCcEEEEeeCCCCCCCCCHHH--------HHHHhCCCCCCCCceeEEE-e--ecccCCChHHHHHHHHHhhhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKED--------LMEQMGLKSITDREVCCYM-I--SCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~--Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.-.+++++.+++|........+ +...+.. ++ .+.+.+. . |+..+.++++|++.|.+.+.+
T Consensus 115 ~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~--c~-~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 115 VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK--CG-GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH--hC-CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 1257899999999765433222 1111111 01 1111111 1 366788899999999988875
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8e-06 Score=55.19 Aligned_cols=118 Identities=11% Similarity=0.133 Sum_probs=75.3
Q ss_pred eCCEEEEEEecCCccc-------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 14 KGNVTIKLWDLGGQPR-------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~-------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+++-.+.+||+||.++ ++.....++...|.+++++++.++.--.+...+.+-+..- -+.|+++++|.+|+
T Consensus 84 ~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~ 160 (296)
T COG3596 84 YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG---LDKRVLFVVTQADR 160 (296)
T ss_pred ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc---cCceeEEEEehhhh
Confidence 3457899999999754 5667778889999999999999864333333333322221 23889999999998
Q ss_pred CCCC---------CHHHHHHHhCC-----CCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 87 PEAL---------SKEDLMEQMGL-----KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 87 ~~~~---------~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
..+- +...+...+.. ...-..-.+++..|+..+.|++++...++..+-
T Consensus 161 a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 161 AEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 6541 11111111100 000011224677888999999999999998763
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=44.00 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=29.7
Q ss_pred CCEEEEEEeCCC--CCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 41 VSAIVYVVDAAD--YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 41 ~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++++|++|++. ..++++...++..+... +++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 689999999997 46778777888888664 45899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=63.94 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=55.1
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
++.+-+++.||||+..+....-..++.+|++++|+|+.+.-.+..-+...+.+ ..+.|+++++||+|.
T Consensus 194 ~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai-----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 194 GKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI-----QNRLPIVVVINKVDR 261 (971)
T ss_pred CceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH-----hccCcEEEEEehhHH
Confidence 34577999999999999999999999999999999999876665443333333 256999999999995
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=55.16 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=26.9
Q ss_pred cCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 40 AVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 40 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+++++++++.+.. .+.... ..+..+. ..+|+++|+||+|+..
T Consensus 114 rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 114 RVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred ceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 36788888887652 222221 2222221 2589999999999965
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=54.42 Aligned_cols=107 Identities=16% Similarity=0.104 Sum_probs=69.9
Q ss_pred ceeeEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 7 FNMRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 7 ~~~~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
+|..++.++ ...+.=.|+||+.+|.+.+-....+-|+.|+|+.++|.. ..+.++.+-.. ++... ..+++++||.
T Consensus 105 In~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLA-rQVGV--~~ivvfiNKv 180 (449)
T KOG0460|consen 105 INAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLA-RQVGV--KHIVVFINKV 180 (449)
T ss_pred EeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHH-HHcCC--ceEEEEEecc
Confidence 455555544 456677899999999887777778899999999999954 33333333222 22222 3478889999
Q ss_pred CCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecc
Q 032598 85 DKPEALSK-----EDLMEQMGLKSITDREVCCYMISCK 117 (137)
Q Consensus 85 D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~ 117 (137)
|+.+.... -++.+.|....++..+++++.-||+
T Consensus 181 D~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 181 DLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 99844322 2344455444555567788887774
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6e-05 Score=55.69 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=76.1
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+.++.-.+.+-|.+-. ....+...- ..||.++++||++++.++.......+..... ...|+++|+.|+|+.+..
T Consensus 468 ~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 468 EVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVP 542 (625)
T ss_pred eeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhh
Confidence 34455566677776654 222222222 6799999999999999999887765544332 679999999999997643
Q ss_pred -----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 91 -----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 91 -----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...+.+..++.. +.+.+|.++.-. .++|..|+.++.
T Consensus 543 Q~~~iqpde~~~~~~i~-------~P~~~S~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 543 QRYSIQPDEFCRQLGLP-------PPIHISSKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred hccCCChHHHHHhcCCC-------CCeeeccCCCCC-chHHHHHHHhhh
Confidence 236777777764 356677774333 889988887654
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=48.99 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=72.5
Q ss_pred CCEEEEEEecCCccccH---HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR---SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-KPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~---~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.-+++++||.|||..+- --....++++.++++|+|+.+. -.+.+.++...+.+ ..-.+++.+=++..|.|.....
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 44789999999996432 1234458999999999999763 22333333332222 2234788899999999976542
Q ss_pred CH--------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 91 SK--------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 91 ~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. +...+.+.......-.+.|+.+|-. ..++.+.|.+++..+.
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLi 202 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLI 202 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHh
Confidence 21 1222333322222234556777766 4568899988887764
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.2e-05 Score=55.63 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=60.9
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS 91 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 91 (137)
+.+.+.+++++||||+-+|.-..+..++-.||.|+|+++...-.-+...-|.+ ....+.|.+.++||+|......
T Consensus 99 ~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-----~~ry~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 99 FTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-----MKRYNVPRICFINKMDRMGASP 173 (721)
T ss_pred eeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-----HHhcCCCeEEEEehhhhcCCCh
Confidence 45678999999999999999888889999999999999876422121222322 2225799999999999876644
Q ss_pred H---HHHHHHhC
Q 032598 92 K---EDLMEQMG 100 (137)
Q Consensus 92 ~---~~~~~~~~ 100 (137)
. .++...++
T Consensus 174 ~~~l~~i~~kl~ 185 (721)
T KOG0465|consen 174 FRTLNQIRTKLN 185 (721)
T ss_pred HHHHHHHHhhcC
Confidence 3 34444444
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=56.30 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=74.1
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---ChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+.-...+......+++.|+||+..|-..+-....+||.-++|+++...+ .|+.--+..+...-.....-...++++|
T Consensus 146 EvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vN 225 (501)
T KOG0459|consen 146 EVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN 225 (501)
T ss_pred eeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEE
Confidence 3333456667889999999999999877777788899999999875421 2222111111111111112345789999
Q ss_pred CCCCCCCCCH--------HHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHH
Q 032598 83 KIDKPEALSK--------EDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 83 K~D~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
|+|.+...-. .++...+....+ ......++++|..+|.++++...
T Consensus 226 KMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 226 KMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9997654211 122222221122 23467799999999999887543
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.6e-05 Score=50.97 Aligned_cols=75 Identities=28% Similarity=0.471 Sum_probs=53.5
Q ss_pred CCEEEEEEecCCccccH-----HhHHHHhccCCEEEEEEeCCCCC---ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-----SMWERYCRAVSAIVYVVDAADYD---NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-----~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
++.-+.+||++|++.+- +...+-++..+++++|||+...+ .+...++-++.+++. .+...+.....|+|+
T Consensus 51 Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDL 128 (295)
T KOG3886|consen 51 GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDL 128 (295)
T ss_pred hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechh
Confidence 45788999999998543 23444578899999999998753 344444555666654 255667888999999
Q ss_pred CCCCC
Q 032598 87 PEALS 91 (137)
Q Consensus 87 ~~~~~ 91 (137)
.....
T Consensus 129 v~~d~ 133 (295)
T KOG3886|consen 129 VQEDA 133 (295)
T ss_pred cccch
Confidence 76544
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.4e-05 Score=47.41 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=45.6
Q ss_pred CEEEEEEecCCccc----cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 16 NVTIKLWDLGGQPR----FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
...+.++||||... ....+..+++.+|++++|.++....+-.+...+.+.... ....+++|.||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 45689999999743 336788889999999999999886554444444444432 233489999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00019 Score=48.17 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=45.7
Q ss_pred CEEEEEEecCCccc-------------cHHhHHHHhcc-CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQPR-------------FRSMWERYCRA-VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
...++++||||... ...+...|++. .+.+++|+|+...-.-.+.......+ ...+.|+++|+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~Vi 199 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVI 199 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEE
Confidence 47899999999742 12355666774 56899999886532222222222222 22568999999
Q ss_pred eCCCCCCC
Q 032598 82 NKIDKPEA 89 (137)
Q Consensus 82 nK~D~~~~ 89 (137)
||+|..+.
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998754
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.6e-05 Score=54.71 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=69.4
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHH--HHhcCCCCCCCcEEEEeeCCCCCCCCCHH-
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH--DLLSKPSLNGIPLLVLGNKIDKPEALSKE- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 93 (137)
..+.+.|+||++-.-+.+.....--|+.++++...++=+..+..+.+. ++.+. ..++++-||+|+.......
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-----khiiilQNKiDli~e~~A~e 199 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-----KHIIILQNKIDLIKESQALE 199 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----ceEEEEechhhhhhHHHHHH
Confidence 467899999997665555444455688888887765322222222222 22222 4479999999997654332
Q ss_pred ---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 ---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++...+. .....+.+++++||.-++|++-+.+.++..+
T Consensus 200 q~e~I~kFi~--~t~ae~aPiiPisAQlkyNId~v~eyivkkI 240 (466)
T KOG0466|consen 200 QHEQIQKFIQ--GTVAEGAPIIPISAQLKYNIDVVCEYIVKKI 240 (466)
T ss_pred HHHHHHHHHh--ccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence 2222221 1112355799999999999999999888765
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.3e-05 Score=50.37 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=65.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~ 93 (137)
-++.+.+++|.|.-+-.- ....-+|.+++|+.+.-.+..+.+..-+.++ +=++|+||+|...... ..
T Consensus 120 aG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~~ 187 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTVR 187 (266)
T ss_dssp TT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHHH
Confidence 367788899966422221 2356699999999998877766544333333 2389999999654322 23
Q ss_pred HHHHHhCCCC--CCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 DLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++...+.... ......+++.+||.+++|++++.+.|.+.-
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4444443222 223456799999999999999999988643
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00042 Score=47.75 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=58.3
Q ss_pred hccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH--HHHHHhCCCCCCCCceeEEEe
Q 032598 38 CRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--DLMEQMGLKSITDREVCCYMI 114 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 114 (137)
..+.|-.++|+.+.+++ +...+.+++-.+ ...++.-++++||+|+.+..... +....+... ....+.+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~-----gy~v~~~ 147 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI-----GYPVLFV 147 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhC-----CeeEEEe
Confidence 44578888899888874 444444544433 23567778889999998765544 233333322 3358999
Q ss_pred ecccCCChHHHHHHHHHh
Q 032598 115 SCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 115 Sa~~~~~v~~~~~~i~~~ 132 (137)
|++++++++++...+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999998877543
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.5e-05 Score=57.92 Aligned_cols=67 Identities=21% Similarity=0.201 Sum_probs=52.0
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.+++.++++|+||+-+|.+......+-+|+.+.++|+.+.-..+...-..+.+ ..+...++|+||+|
T Consensus 69 ~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~-----~~~~~~~lvinkid 135 (887)
T KOG0467|consen 69 HKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAW-----IEGLKPILVINKID 135 (887)
T ss_pred cCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHH-----HccCceEEEEehhh
Confidence 36889999999999999999999999999999999998754333222222222 34566899999999
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.8e-05 Score=51.52 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=40.2
Q ss_pred CCcEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 74 GIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..+-++++||+|+.... ........++.. .....++++||++|+|++++.+||.+..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45569999999997532 233343333221 2345699999999999999999998743
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=46.93 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=32.7
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHh
Q 032598 42 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99 (137)
Q Consensus 42 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 99 (137)
|.+++|+|+.++.+-.. ..+..... ....+.|+++++||+|+.+..........+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 78999999988633221 12222211 112468999999999997544433444443
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0007 Score=46.61 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=69.5
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SK 92 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~ 92 (137)
.-++.+.+++|.|.-+..- .-..-+|.+++|.-+.-.+..+.+..-..++ . =++|+||.|..... ..
T Consensus 141 AaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi------a---Di~vINKaD~~~A~~a~ 208 (323)
T COG1703 141 AAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI------A---DIIVINKADRKGAEKAA 208 (323)
T ss_pred hcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh------h---heeeEeccChhhHHHHH
Confidence 3467888999976533322 1234589999988776666655544332222 2 38999999965432 12
Q ss_pred HHHHHHhCCCC----CCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKS----ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++...+.... ......+++.+||..|+|+.++.+.+.+...
T Consensus 209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 209 RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 23333333322 2234567899999999999999999886543
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=44.56 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=34.1
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHH-------HhccCCEEEEEEeCCCCCChH
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWER-------YCRAVSAIVYVVDAADYDNLP 57 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~-------~~~~~~~~i~v~d~~~~~~~~ 57 (137)
.+.+.+.++++.|.||.-...+.... ..+.||.+++|+|++..+...
T Consensus 103 vi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 103 VIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQR 156 (364)
T ss_pred eEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHH
Confidence 35678999999999997544433222 246799999999999865433
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=46.54 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=49.5
Q ss_pred CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccC
Q 032598 42 SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNS 119 (137)
Q Consensus 42 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 119 (137)
+.-|+|+|.+..+.... +- ...... .=++|+||.|+...... +...+..+. -..+.+++++|+++|
T Consensus 119 ~~~v~VidvteGe~~P~--K~------gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~ktg 186 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR--KG------GPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKTG 186 (202)
T ss_pred ceEEEEEECCCCCCCcc--cC------CCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCCC
Confidence 37789999887543110 00 100011 23899999999865432 222221111 123567999999999
Q ss_pred CChHHHHHHHHHhh
Q 032598 120 TNIDTVIDWLVKHS 133 (137)
Q Consensus 120 ~~v~~~~~~i~~~~ 133 (137)
+|+++++.|+....
T Consensus 187 ~G~~~~~~~i~~~~ 200 (202)
T COG0378 187 EGLDEWLRFIEPQA 200 (202)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999987654
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0006 Score=50.50 Aligned_cols=116 Identities=16% Similarity=0.289 Sum_probs=80.1
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 93 (137)
++...+.+-|.+|.. -..|....|++||||..-+..+++.+..+...+..+.....+|+++++.+--.....+..
T Consensus 74 gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv 148 (749)
T KOG0705|consen 74 GQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRV 148 (749)
T ss_pred ccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccc
Confidence 444556666666632 245777899999999999999999988887777776666789999988876543332211
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.....-.....+.+.+.+++++|..|.+++..|+.+...+.
T Consensus 149 ~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i 189 (749)
T KOG0705|consen 149 ITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIV 189 (749)
T ss_pred cchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHH
Confidence 11111111122344567999999999999999999987664
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00083 Score=47.67 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=47.6
Q ss_pred EEEEEecCCccc-----------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 18 TIKLWDLGGQPR-----------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 18 ~~~~~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+++++||||... |.....=+...+|.++++||+...+--++....+.++.. ..=.+-+|.||+|.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADq 223 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQ 223 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccc
Confidence 589999999633 344555567889999999999876543333344444433 33446788999999
Q ss_pred CCCCC
Q 032598 87 PEALS 91 (137)
Q Consensus 87 ~~~~~ 91 (137)
.+...
T Consensus 224 Vdtqq 228 (532)
T KOG1954|consen 224 VDTQQ 228 (532)
T ss_pred cCHHH
Confidence 76533
|
|
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00015 Score=43.17 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=52.3
Q ss_pred HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeE
Q 032598 32 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 111 (137)
Q Consensus 32 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (137)
.....+.+.+++++.|++.++..+++.. |...+... ...++|.++++||.|+.+..... .... ..+
T Consensus 38 ~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~---~~~~--------~~~ 103 (124)
T smart00010 38 VYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQVA---TEEG--------LEF 103 (124)
T ss_pred hccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcCC---HHHH--------HHH
Confidence 3345567889999999999988777644 65555433 23568899999999984432211 1111 136
Q ss_pred EEeecccCCChH
Q 032598 112 YMISCKNSTNID 123 (137)
Q Consensus 112 ~~~Sa~~~~~v~ 123 (137)
.++|+++|+|+.
T Consensus 104 ~~~s~~~~~~~~ 115 (124)
T smart00010 104 AETSAKTPEEGE 115 (124)
T ss_pred HHHhCCCcchhh
Confidence 789999999985
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0032 Score=44.92 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=65.3
Q ss_pred EEEEEEecCCccccHHhHHHHhcc--CCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRA--VSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
--++++|.+|+.+|....-+.+.+ .+..++|+++... ++-+ +.+-.+. .-++|++++.+|+|+......
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr---EHLgl~~----AL~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR---EHLGLIA----ALNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH---HHHHHHH----HhCCCeEEEEEeeccccchhH
Confidence 458999999999887655555543 5778888877653 2222 2222221 247999999999999876433
Q ss_pred ----HHHHHHhCCCCC---------------------CCCceeEEEeecccCCChHHHH
Q 032598 93 ----EDLMEQMGLKSI---------------------TDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 93 ----~~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
.++.+.+....+ ...-.+++-+|+.+|+|+.-+.
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 333333322111 1234668889999999976543
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0039 Score=41.13 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=65.1
Q ss_pred ceeeEEEeCCEEEEEEecCCcccc-------HHhHHH----HhccCCEEEEEEeCCCCCCh--HHHHHHHHHHhcCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRF-------RSMWER----YCRAVSAIVYVVDAADYDNL--PVSRSELHDLLSKPSLN 73 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~-------~~~~~~----~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (137)
........++..+.++||||-... ...+.. ...+.+++++|+..... +. .....++..++.....
T Consensus 39 ~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~~~- 116 (212)
T PF04548_consen 39 CQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEEIW- 116 (212)
T ss_dssp -EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGGG-
T ss_pred cceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHHHH-
Confidence 334445678899999999995321 112222 23468999999998832 32 2233445555443222
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHH---------HhCCCCCCCCceeEEEeecc------cCCChHHHHHHHHHhhhhc
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLME---------QMGLKSITDREVCCYMISCK------NSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~------~~~~v~~~~~~i~~~~~~~ 136 (137)
..++|+.+..|........+... .++. +. . .++..+.+ ....+.+|++.+-+.+.++
T Consensus 117 -k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~--c~-~--R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 117 -KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEK--CG-G--RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp -GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHH--TT-T--CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -hHhhHHhhhccccccccHHHHHhccCchhHhHHhhh--cC-C--EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 34889999998766554322111 1110 11 1 13433333 3456888888888777653
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0058 Score=44.00 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=24.8
Q ss_pred EEEEEEecCCccccH----HhH---HHHhccCCEEEEEEeCC
Q 032598 17 VTIKLWDLGGQPRFR----SMW---ERYCRAVSAIVYVVDAA 51 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~----~~~---~~~~~~~~~~i~v~d~~ 51 (137)
.++.++||||..... .+. ...++.+|++++|+|+.
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 459999999964321 222 23367899999999984
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=46.50 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=63.9
Q ss_pred ecCCc-cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCC
Q 032598 23 DLGGQ-PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 101 (137)
Q Consensus 23 Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 101 (137)
+.||+ .++.......+...|.++-|+|+.++.+-.. ..++.+. .+.|.++++||+|+.......+....+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 34666 4566777788999999999999999755322 1223332 34566999999999876665666666653
Q ss_pred CCCCCCceeEEEeecccCCChHHHHH
Q 032598 102 KSITDREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 102 ~~~~~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
.. ....+.+|+..+.+...+..
T Consensus 89 ~~----~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 EE----GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred cC----CCccEEEEeecccCccchHH
Confidence 21 23467888888887766663
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.008 Score=40.73 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=43.9
Q ss_pred EEeCCEEEEEEecCCccccHH----------hHHHHhc--cCCEEEEEEeCCCCC-ChH--HHHHHHHHHhcCCCCCCCc
Q 032598 12 VTKGNVTIKLWDLGGQPRFRS----------MWERYCR--AVSAIVYVVDAADYD-NLP--VSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~----------~~~~~~~--~~~~~i~v~d~~~~~-~~~--~~~~~~~~~~~~~~~~~~p 76 (137)
...++.++.+|||||...... ....+++ ..+++++|..++... ... .+.+.+....... .-.+
T Consensus 74 ~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~ 151 (249)
T cd01853 74 GTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRN 151 (249)
T ss_pred EEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhC
Confidence 445678999999999754411 1223343 578888887665432 222 2223333332211 1146
Q ss_pred EEEEeeCCCCCCC
Q 032598 77 LLVLGNKIDKPEA 89 (137)
Q Consensus 77 ~ivv~nK~D~~~~ 89 (137)
+++|.||+|....
T Consensus 152 ~ivV~T~~d~~~p 164 (249)
T cd01853 152 AIVVLTHAASSPP 164 (249)
T ss_pred EEEEEeCCccCCC
Confidence 9999999998644
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0084 Score=41.84 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=42.7
Q ss_pred eCCEEEEEEecCCccccHHh-------HHHHh--ccCCEEEEEEeCCCC--CCh-HHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 14 KGNVTIKLWDLGGQPRFRSM-------WERYC--RAVSAIVYVVDAADY--DNL-PVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~-------~~~~~--~~~~~~i~v~d~~~~--~~~-~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.++.++.++||||..+.... ...++ ...|++++|..++.. ... ..+.+.+...+... .-.+++++.
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVf 160 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVL 160 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEE
Confidence 46889999999997654221 12222 258999999665532 212 22223333333211 124689999
Q ss_pred eCCCCCC
Q 032598 82 NKIDKPE 88 (137)
Q Consensus 82 nK~D~~~ 88 (137)
+++|...
T Consensus 161 Th~d~~~ 167 (313)
T TIGR00991 161 THAQFSP 167 (313)
T ss_pred ECCccCC
Confidence 9999763
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=44.88 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=62.5
Q ss_pred CEEEEEEecCCc---------cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE----EEEee
Q 032598 16 NVTIKLWDLGGQ---------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL----LVLGN 82 (137)
Q Consensus 16 ~~~~~~~Dt~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~----ivv~n 82 (137)
+-.+-+.||.|- ..|.+... ....+|.++.|.|++.|.--.+....+ ..++....+..|. +=|=|
T Consensus 225 g~~vlltDTvGFisdLP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl-~vL~~igv~~~pkl~~mieVdn 302 (410)
T KOG0410|consen 225 GNFVLLTDTVGFISDLPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVL-HVLNQIGVPSEPKLQNMIEVDN 302 (410)
T ss_pred CcEEEEeechhhhhhCcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHH-HHHHhcCCCcHHHHhHHHhhcc
Confidence 456788999884 23333332 256799999999999986433322222 2333323333443 33456
Q ss_pred CCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 83 KIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 83 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|.|..+.....+ -+ ..+.+||++|+|++++.+.+-..+.
T Consensus 303 kiD~e~~~~e~E----~n---------~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 303 KIDYEEDEVEEE----KN---------LDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccccccCccc----cC---------CccccccccCccHHHHHHHHHHHhh
Confidence 666543322110 00 1578999999999999998876654
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0012 Score=48.64 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=51.4
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+.++.++++|.||+.+|.+..-..++-.||.+.|+|..+.-..+.-.-+.+++-. .+.=+++.||+|.
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLVMNKMDR 162 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccceEEeehhhH
Confidence 4578999999999999999999999999999999999876544433333333322 2333778999995
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.019 Score=41.78 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=45.2
Q ss_pred hc-cCCEEEEEE-eCC--C--CCChH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHHHhCCCCCCCC
Q 032598 38 CR-AVSAIVYVV-DAA--D--YDNLP-VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK---EDLMEQMGLKSITDR 107 (137)
Q Consensus 38 ~~-~~~~~i~v~-d~~--~--~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 107 (137)
++ .++..++|. |.+ + .+.+. .-.+++..+.. .++|++++.||.|-...... .++.+.++.
T Consensus 141 I~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~et~~l~~~l~eky~v------ 210 (492)
T TIGR02836 141 IQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPETEALRQELEEKYDV------ 210 (492)
T ss_pred HHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCchhHHHHHHHHHHhCC------
Confidence 55 789888888 764 1 11222 22245554433 57999999999994322222 123333332
Q ss_pred ceeEEEeeccc--CCChHHHHHHHHH
Q 032598 108 EVCCYMISCKN--STNIDTVIDWLVK 131 (137)
Q Consensus 108 ~~~~~~~Sa~~--~~~v~~~~~~i~~ 131 (137)
+++.+|+.. .+.+..+++.+..
T Consensus 211 --pvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 211 --PVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred --ceEEEEHHHcCHHHHHHHHHHHHh
Confidence 356666643 3456666665543
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0029 Score=46.57 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=49.2
Q ss_pred hccCCEEEEEEeCCCCCCh--HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEee
Q 032598 38 CRAVSAIVYVVDAADYDNL--PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMIS 115 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 115 (137)
+..+|.+|.++|+-++--| .++..+.... ..++..++++||+||.....+......+.. +++++++.|
T Consensus 172 lErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~-----~ni~~vf~S 241 (562)
T KOG1424|consen 172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLPPEQRVAWAEYFRQ-----NNIPVVFFS 241 (562)
T ss_pred HhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCCHHHHHHHHHHHHh-----cCceEEEEe
Confidence 7789999999999986422 2222332222 244667999999999877666666666643 246788899
Q ss_pred ccc
Q 032598 116 CKN 118 (137)
Q Consensus 116 a~~ 118 (137)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 876
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0026 Score=45.44 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=48.5
Q ss_pred cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCC
Q 032598 28 PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 101 (137)
Q Consensus 28 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 101 (137)
..|.......+..+|+++-|+|+-||.+-.-- +.-..+++. ..+...|+|+||.|+...+.+.+....|+.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~-~vE~~V~~~--~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~ 204 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCP-EVEEAVLQA--HGNKKLILVLNKIDLVPREVVEKWLVYLRR 204 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCCh-hHHHHHHhc--cCCceEEEEeehhccCCHHHHHHHHHHHHh
Confidence 34555566667889999999999998643211 111222222 244789999999999988777777777763
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0047 Score=44.16 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=63.0
Q ss_pred EEEEEEecCCccccHHhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
--++|+|.+|+++|-...-..+. -.|...+++-+.-. -.-...+.+-.. ..-+.|+++|.+|+|+......++
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLA----LaL~VPVfvVVTKIDMCPANiLqE 293 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLA----LALHVPVFVVVTKIDMCPANILQE 293 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhh----hhhcCcEEEEEEeeccCcHHHHHH
Confidence 45799999999988654332222 25666666654431 111111122111 125799999999999976544332
Q ss_pred ----HHHHhCCC---------------------CCCCCceeEEEeecccCCChHHHHHH
Q 032598 95 ----LMEQMGLK---------------------SITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 95 ----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
+...++.. .-..+-|++|.+|-.+|+|++-+..-
T Consensus 294 tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 294 TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 33333321 11234678999999999998765443
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.015 Score=37.05 Aligned_cols=67 Identities=16% Similarity=0.064 Sum_probs=48.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+.+.+.++|||+.... .....+..+|.+++++.++. .+........+.+.. .+.|..+++||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 5788999999866432 33456788999999998874 466666666655533 3567899999999754
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.03 Score=39.42 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=71.5
Q ss_pred CEEEEEEecCCccccHHhHHHHhcc---CC-EEEEEEeCCCCCCh-HHHHHHHHHHhcC---------------------
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRA---VS-AIVYVVDAADYDNL-PVSRSELHDLLSK--------------------- 69 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~---~~-~~i~v~d~~~~~~~-~~~~~~~~~~~~~--------------------- 69 (137)
-.++.+|=.-|......+....+.. ++ .+|++.|+++++.. +.+.+|..-+.+.
T Consensus 99 ~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~ 178 (473)
T KOG3905|consen 99 LTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKD 178 (473)
T ss_pred hhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4789999998887777776665543 23 67788899998542 3333443311100
Q ss_pred ----------------CC-----------------------CCCCcEEEEeeCCCCCCCC----C-----HHHHHHHhCC
Q 032598 70 ----------------PS-----------------------LNGIPLLVLGNKIDKPEAL----S-----KEDLMEQMGL 101 (137)
Q Consensus 70 ----------------~~-----------------------~~~~p~ivv~nK~D~~~~~----~-----~~~~~~~~~~ 101 (137)
.+ .-++|+++|++|||..... . ...+...++.
T Consensus 179 wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRk 258 (473)
T KOG3905|consen 179 WQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRK 258 (473)
T ss_pred HHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHH
Confidence 00 0168999999999983221 1 1122222221
Q ss_pred CCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 102 KSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 102 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.+-.-+...+.+|++..-|++-+.+.|++..
T Consensus 259 -FCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 259 -FCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred -HHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 0001123489999999999999999988754
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.014 Score=44.53 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=46.2
Q ss_pred EEEEEecCCcc---ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 18 TIKLWDLGGQP---RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 18 ~~~~~Dt~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+.++|.||.. ...+....++..+|.+|+|..+.+.-+..+.. .+..... ..+.+.++.||+|.....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~----~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE----EKPNIFILNNKWDASASE 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc----cCCcEEEEechhhhhccc
Confidence 57889999964 55678888899999999999987754433322 2222211 245567778888986553
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.095 Score=36.05 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=55.9
Q ss_pred CCEEEEEEecCCccccHHhHH----H---Hhc-----cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRSMWE----R---YCR-----AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~----~---~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+++.+.++||||......... . ... ..+..++|+|++.. .+... ....+.+.. -+.-++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 467899999999865443221 1 111 38999999999743 33322 223333221 13578899
Q ss_pred CCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHH
Q 032598 83 KIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 83 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
|.|.....- .-.+...++. ++..++ +|++++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~~~--------Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELKL--------PIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHHCc--------CEEEEe--CCCChHhCc
Confidence 999865432 2334444443 366665 788887664
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.038 Score=39.67 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=52.0
Q ss_pred EEEEEEecCCccccHHhHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC--C--
Q 032598 17 VTIKLWDLGGQPRFRSMWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK--P-- 87 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~--~-- 87 (137)
-++.+||.||.....-....| +...|.+|++.+- .+...+-++-.-.+. .++|+.+|-+|+|. .
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~ 158 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNE 158 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHH
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhh
Confidence 469999999964333333444 4568887776642 344433333322222 67999999999995 1
Q ss_pred ---CCC--CH----HH----HHHHhCCCCCCCCceeEEEeecccC--CChHHHHHHHHHhhh
Q 032598 88 ---EAL--SK----ED----LMEQMGLKSITDREVCCYMISCKNS--TNIDTVIDWLVKHSK 134 (137)
Q Consensus 88 ---~~~--~~----~~----~~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~~~~~i~~~~~ 134 (137)
... .. ++ ..+.|... +....++|.+|..+- .....|.+.|.+.+-
T Consensus 159 ~~~~p~~f~~e~~L~~IR~~c~~~L~k~--gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 159 RRRKPRTFNEEKLLQEIRENCLENLQKA--GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HCC-STT--HHTHHHHHHHHHHHHHHCT--T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred hccCCcccCHHHHHHHHHHHHHHHHHHc--CCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 111 11 11 22333221 223456888888664 456777777776554
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.11 Score=36.65 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCEEEEEEecCCccccHH----hHHHHh--------ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRS----MWERYC--------RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~----~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.++.+.++||||...... ...... ...+..++|+|++.. .+.+.. ...+.+. --+.-++.|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEEE
Confidence 567899999999854322 111221 246789999999853 222222 2222211 123478899
Q ss_pred CCCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHH
Q 032598 83 KIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 83 K~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
|.|..... ..-.+...++. ++..++ +|++++++-
T Consensus 268 KlD~t~~~G~~l~~~~~~~~--------Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKGGVVFAIADELGI--------PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCccHHHHHHHHHCC--------CEEEEe--CCCChhhCc
Confidence 99964332 22344444443 366666 788886653
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.15 Score=36.17 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=54.5
Q ss_pred CCEEEEEEecCCccccHH-hH---HHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MW---ERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~---~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.++||+|...... ++ .... ...+.+++|+|++.....- .....+.+. .+ .--++.||.|...
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~---~~a~~f~~~---~~-~~giIlTKlD~~~ 293 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV---EQAREFNEA---VG-IDGVILTKVDADA 293 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH---HHHHHHHhc---CC-CCEEEEeeecCCC
Confidence 356799999999865322 22 2222 2578999999987643211 222222221 11 2467899999865
Q ss_pred CCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHH
Q 032598 89 ALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 89 ~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
..- .-.+....+. ++..++ +|++++++..
T Consensus 294 ~~G~~ls~~~~~~~--------Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 KGGAALSIAYVIGK--------PILFLG--VGQGYDDLIP 323 (336)
T ss_pred CccHHHHHHHHHCc--------CEEEEe--CCCChhhccc
Confidence 432 2233333333 366665 7999877653
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.012 Score=40.36 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=63.0
Q ss_pred CEEEEEEecCCc----------cccHHhHHHHhccCC---EEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 16 NVTIKLWDLGGQ----------PRFRSMWERYCRAVS---AIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 16 ~~~~~~~Dt~g~----------~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+-.+.+.|.||- .++......|+...+ .+.+.+|++.+-...+ ....+++.. .+.|+.+|.|
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D--~~~i~~~ge---~~VP~t~vfT 256 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD--NPEIAWLGE---NNVPMTSVFT 256 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC--hHHHHHHhh---cCCCeEEeee
Confidence 457899999991 345566666665433 4445556665422222 111222222 5799999999
Q ss_pred CCCCCCCCC------HHHHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHHHHH
Q 032598 83 KIDKPEALS------KEDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 83 K~D~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
|||...... ...+...+..... -....+++.+|+.++.|++.+.-.|..
T Consensus 257 K~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 257 KCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 999764422 1122221211110 011334667999999999988776654
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.054 Score=44.52 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=46.0
Q ss_pred EEEEEecCCcc--------ccHHhHHHHhc---------cCCEEEEEEeCCCCC--ChH-------HHHHHHHHHhcCCC
Q 032598 18 TIKLWDLGGQP--------RFRSMWERYCR---------AVSAIVYVVDAADYD--NLP-------VSRSELHDLLSKPS 71 (137)
Q Consensus 18 ~~~~~Dt~g~~--------~~~~~~~~~~~---------~~~~~i~v~d~~~~~--~~~-------~~~~~~~~~~~~~~ 71 (137)
+-.++||+|.. .....|..+++ -.+|+|+++|+.+.- +.+ .++..++++....
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l- 240 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL- 240 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-
Confidence 45689999942 23456666643 389999999988642 222 2333444444332
Q ss_pred CCCCcEEEEeeCCCCCC
Q 032598 72 LNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~ 88 (137)
....|+.++.+|+|+..
T Consensus 241 g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 241 GARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCCEEEEEecchhhc
Confidence 35799999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.04 Score=36.99 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=41.9
Q ss_pred CEEEEEEec-CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC-CcEEEEeeCCCCC
Q 032598 16 NVTIKLWDL-GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG-IPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt-~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~ 87 (137)
...+.+.|| +|.+.+. +.-.+++|.++.|+|++- +++....+. ..+... .+ .++.+|+||.|-.
T Consensus 133 ~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~e---lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEE---LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHH---hCCceEEEEEeeccch
Confidence 467788898 6765553 334678999999999985 344333222 222221 23 6799999999965
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.076 Score=33.38 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=38.4
Q ss_pred CEEEEEEecCCccccHHhHHHH--------hccCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERY--------CRAVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+....++||+|...-......+ .-..+++++++|+....... ....+..++ ..++ +++.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi----~~ad---~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI----AFAD---RILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH----HHCC---EEEEecccC
Confidence 5778999999986444444332 23488999999987532211 111122222 1233 778999995
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.17 Score=31.03 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=43.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+.+.++|+|+... ......+..+|.++++.+++. .++......++.+... ....++.++.|+.+..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQ--LRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCCH
Confidence 6789999987533 333467889999999998864 3444444444444332 1345678999999743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.12 Score=35.54 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=24.3
Q ss_pred EEEEEecCCcccc----HHhHHHH---hccCCEEEEEEeCC
Q 032598 18 TIKLWDLGGQPRF----RSMWERY---CRAVSAIVYVVDAA 51 (137)
Q Consensus 18 ~~~~~Dt~g~~~~----~~~~~~~---~~~~~~~i~v~d~~ 51 (137)
+++++|+||..+. ..+...+ ++.+|++++|+|+.
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 5999999996432 2222333 57899999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.65 Score=36.19 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=43.8
Q ss_pred eCCEEEEEEecCCccccH----------HhHHHHhc--cCCEEEEEEeCCCCCCh-H--HHHHHHHHHhcCCCCCCCcEE
Q 032598 14 KGNVTIKLWDLGGQPRFR----------SMWERYCR--AVSAIVYVVDAADYDNL-P--VSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~----------~~~~~~~~--~~~~~i~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~p~i 78 (137)
.++..+.++||||..... .....+++ ..|++++|..++..... + ...+.+..++....+ .-+|
T Consensus 163 idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw--k~tI 240 (763)
T TIGR00993 163 VQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW--FNAI 240 (763)
T ss_pred ECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH--cCEE
Confidence 457889999999975421 11222333 48999999877643221 2 123344444443222 3389
Q ss_pred EEeeCCCCCC
Q 032598 79 VLGNKIDKPE 88 (137)
Q Consensus 79 vv~nK~D~~~ 88 (137)
|+.++.|...
T Consensus 241 VVFThgD~lp 250 (763)
T TIGR00993 241 VTLTHAASAP 250 (763)
T ss_pred EEEeCCccCC
Confidence 9999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=36.14 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=46.6
Q ss_pred ecCCcc-ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCC
Q 032598 23 DLGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL 101 (137)
Q Consensus 23 Dt~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 101 (137)
+.||+. ..-..+...++..|.+|=|=|+--+-|-.. ..++.++ +.+|-|+|.||+|+.+......+.+.++.
T Consensus 28 wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~~ 100 (335)
T KOG2485|consen 28 WFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLEW 100 (335)
T ss_pred cCchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHhc-----CCCceEEEEecccccCchhhhHHHHHHHh
Confidence 346653 222345556788999999998876533221 2333332 36889999999999986666666666653
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.29 Score=35.93 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=40.5
Q ss_pred CCEEEEEEecCCccccHH-hHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+++.+.++||+|...... ++... ....+-+++|+|++-.+.-... ...+.+. --+.-++.||.|...
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~----~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS----VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc----cCCcEEEEECccCCC
Confidence 367899999999865542 22222 1246789999998764332222 2223221 134578899999754
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.21 Score=31.05 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
.++.+.++||+|..... ..++..||-+++|..+.-.+.+.-+. ..+.. .-=+++.||.|
T Consensus 90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIME------IADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhh------hcCEEEEeCCC
Confidence 36889999999965332 34889999999999887333322111 11111 11278899987
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.55 Score=33.26 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=53.0
Q ss_pred CEEEEEEecCCccccHHhHHHHhc--------cCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+++|.|.-.-.+....+.. ..|+++.|+|+........ ....+.. +....+ ++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~---Qia~AD---~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAED---QLAFAD---VIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHH---HHHhCc---EEEEecccC
Confidence 366778889887555444444432 3688999999987533222 2222222 222244 889999999
Q ss_pred CCCCCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 87 PEALSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
.+......+...+... ++..+++.+|.
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 8765444433333221 23445676666
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.65 Score=33.44 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=24.5
Q ss_pred EEEEEecCCcccc----HHhHHHH---hccCCEEEEEEeCC
Q 032598 18 TIKLWDLGGQPRF----RSMWERY---CRAVSAIVYVVDAA 51 (137)
Q Consensus 18 ~~~~~Dt~g~~~~----~~~~~~~---~~~~~~~i~v~d~~ 51 (137)
++.+.|+||.... ..+...+ ++.+|++++|+|+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 5999999996432 1222233 67899999999985
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.98 Score=33.05 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=37.8
Q ss_pred hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHh
Q 032598 38 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 99 (137)
+-.+|++|-|+|+.|+-.-. . ..++..++. ..+++-+++|+||+|+...-.-......|
T Consensus 211 iDSSDVvvqVlDARDPmGTr-c-~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~l 269 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTR-C-KHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHL 269 (572)
T ss_pred hcccceeEEeeeccCCcccc-c-HHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHH
Confidence 45689999999999873211 1 233444433 24778899999999997653333333433
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.79 E-value=2.4 Score=32.54 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=56.5
Q ss_pred EEEEEEecCCc-------------cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 17 VTIKLWDLGGQ-------------PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 17 ~~~~~~Dt~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
-+..+.|.||. +..-.+-.+|+.+.+++|+++.-.+.+ .-+.....+.......+...|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 35678999995 233457778899999999988433221 11122223333334456778999999
Q ss_pred CCCCCC--CCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 84 IDKPEA--LSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 84 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
.|+.+. .....+...+....+..+-.-|+.+-.
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVT 523 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVT 523 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEe
Confidence 999865 234455555544333333333544433
|
|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.76 E-value=1 Score=31.09 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=49.0
Q ss_pred EEEEEEecC-CccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 032598 17 VTIKLWDLG-GQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 95 (137)
Q Consensus 17 ~~~~~~Dt~-g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 95 (137)
..+.++|+| |. ..-.-..+..+|.+++|-.++- ..+.++.+.++.. ...++|..+|.||.+.... ...+.
T Consensus 164 ~~~~IIDsaaG~---gCpVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~----~~f~ip~~iViNr~~~g~s-~ie~~ 234 (284)
T COG1149 164 ADLLIIDSAAGT---GCPVIASLKGADLAILVTEPTP-FGLHDLKRALELV----EHFGIPTGIVINRYNLGDS-EIEEY 234 (284)
T ss_pred cceeEEecCCCC---CChHHHhhccCCEEEEEecCCc-cchhHHHHHHHHH----HHhCCceEEEEecCCCCch-HHHHH
Confidence 467778873 32 1112345788999999998875 3455555544433 2368999999999966554 45555
Q ss_pred HHHhCC
Q 032598 96 MEQMGL 101 (137)
Q Consensus 96 ~~~~~~ 101 (137)
.+..+.
T Consensus 235 ~~e~gi 240 (284)
T COG1149 235 CEEEGI 240 (284)
T ss_pred HHHcCC
Confidence 555544
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.61 Score=27.15 Aligned_cols=62 Identities=11% Similarity=-0.004 Sum_probs=40.1
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCC-CCcEEEEeeC
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLN-GIPLLVLGNK 83 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 83 (137)
.+.+.|||+..... ....+..+|.++++.+++. .+........+.+.+. ... ...+.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 78999998865432 3446788999999997764 3555555555555433 222 3456677775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.83 Score=33.66 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=44.4
Q ss_pred CCEEEEEEecCCccccHH-hHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+++.+.++||||...... ..... .-..+.+++|+|+... ++.......+.... ++ .=++.||.|-..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i-~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GL-TGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CC-CEEEEeCccCcc
Confidence 456799999999754322 11111 2347899999998753 23333333343221 12 356699999543
Q ss_pred C-CCHHHHHHHhCC
Q 032598 89 A-LSKEDLMEQMGL 101 (137)
Q Consensus 89 ~-~~~~~~~~~~~~ 101 (137)
. -....+...++.
T Consensus 254 ~~G~~lsi~~~~~~ 267 (428)
T TIGR00959 254 RGGAALSVRSVTGK 267 (428)
T ss_pred cccHHHHHHHHHCc
Confidence 2 223444555543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.81 Score=32.88 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=61.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 95 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 95 (137)
.+.+.++|.| ..+......++.++|-+++|++.+-. ++....+.+..+.+. +....+..+++||.+.....+.+++
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~-slR~ak~lld~l~~~-r~~~~~p~lv~n~~~~~~~~~~~dl 292 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLA-SLRNAKELLDELKRL-RPNDPKPILVLNRVGVPKRPEPSDL 292 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHH-HHHHHHHHHHHHHHh-CCCCCCceEEeeecCCCCCCCHHHH
Confidence 5788999999 55666778889999999999998753 566666666666543 3355666888999987766666777
Q ss_pred HHHhCCC
Q 032598 96 MEQMGLK 102 (137)
Q Consensus 96 ~~~~~~~ 102 (137)
...++..
T Consensus 293 ~~~~~i~ 299 (366)
T COG4963 293 EEILGIE 299 (366)
T ss_pred HHHhCCc
Confidence 7777654
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.87 Score=28.80 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=40.1
Q ss_pred CCEEEEEEecCCccccHH----hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS----MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.+.||+|...... ....+. ...+++++|+++..... .......+.+. .+ ..-++.||.|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~---~~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEA---LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhh---CC-CCEEEEECCcCCC
Confidence 356788999999753322 112222 34899999999864322 22333344322 12 2567789999764
Q ss_pred C
Q 032598 89 A 89 (137)
Q Consensus 89 ~ 89 (137)
.
T Consensus 154 ~ 154 (173)
T cd03115 154 R 154 (173)
T ss_pred C
Confidence 3
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PF14331 ImcF-related_N: ImcF-related N-terminal domain | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.52 Score=32.35 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCEEEEEEeCCCCCC-------hHH----HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 41 VSAIVYVVDAADYDN-------LPV----SRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~-------~~~----~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
.+|+|+++|+.+.-. +.. ++..++++... ....+||.++++|+|+...
T Consensus 26 lnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~-lg~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 26 LNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRT-LGVRLPVYVVFTKCDLLPG 84 (266)
T ss_pred CCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHH-hCCCCCeEeeeECCCcccC
Confidence 699999999875211 111 22233333332 2367999999999998753
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.8 Score=27.23 Aligned_cols=66 Identities=11% Similarity=-0.081 Sum_probs=43.5
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
.+.++|||+..... ....+..+|.++++++++. .++......++.+... ......++.|+.+....
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~ 129 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV 129 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence 68999998764432 3345688999999998875 3555555555544331 22346788999987543
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.3 Score=32.71 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=43.4
Q ss_pred CCEEEEEEecCCccccHH-hHHH---H--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWER---Y--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.++.+.++||+|...... +... . .-..+.+++|+|+... ++.......+.... ++ .-++.||.|-..
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i-~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GL-TGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CC-CEEEEeCccCcc
Confidence 357899999999754322 2211 1 1256788999998643 23333333333221 12 356779999643
Q ss_pred C-CCHHHHHHHhCC
Q 032598 89 A-LSKEDLMEQMGL 101 (137)
Q Consensus 89 ~-~~~~~~~~~~~~ 101 (137)
. -..-.+...++.
T Consensus 255 rgG~alsi~~~~~~ 268 (433)
T PRK10867 255 RGGAALSIRAVTGK 268 (433)
T ss_pred cccHHHHHHHHHCc
Confidence 2 223344444443
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.1 Score=32.75 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=34.0
Q ss_pred eCCEEEEEEecCCccccH-HhHHHHh-----ccCCEEEEEEeCCCCCChHHHHHHHH
Q 032598 14 KGNVTIKLWDLGGQPRFR-SMWERYC-----RAVSAIVYVVDAADYDNLPVSRSELH 64 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~-~~~~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~ 64 (137)
.+++.+.+.||.|+..-. ++..... -.-|-+|+|+|++-.+.-+....-+.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 467999999999975433 3333332 24789999999987665554444443
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.95 Score=30.84 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=40.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
++.+.++||+|...... ....+..||.++++..++- .++......+..+.......++++ -++.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~~-~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDNDF-DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCCc-ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 57889999987643221 1223677999999887753 445554444433322111245554 367899985
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.53 Score=28.19 Aligned_cols=59 Identities=25% Similarity=0.244 Sum_probs=39.2
Q ss_pred EEEEeeCCCCCCCC--------CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEAL--------SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++++|.+--+-. ....+.+.+........++.++.+||..++.+.+.++.+.+.+.+
T Consensus 57 V~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~ 123 (132)
T COG1908 57 VLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKE 123 (132)
T ss_pred EEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHH
Confidence 56667777642211 112233333333344567889999999999999999999988864
|
|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=91.20 E-value=2.9 Score=27.22 Aligned_cols=68 Identities=21% Similarity=0.090 Sum_probs=42.4
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 88 (137)
+.+.+.++|+|..... .......+.+|++++|.++.. .+...+....+.+.+ .+.+ .-+|.||.+...
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~----~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQ----TGSNFLGVVLNKVDISV 194 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh----CCCCEEEEEEeCccccc
Confidence 3577899999863221 112234567999999999865 345555555444432 2333 567899998653
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.4 Score=29.36 Aligned_cols=68 Identities=18% Similarity=0.076 Sum_probs=43.8
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
..+.++|||+. ........+..+|.+++++.++. .++..+...+..+... .....+.-++.|+.|...
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAG-SGPRIGPHFLINQFDPAR 182 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhc-ccccccceEEeeccCcch
Confidence 37999999884 33455567788999999998753 3444444333333331 113455778999998653
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.92 Score=30.93 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=42.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
+++.+.++||+|...... ....+..||.+++++.++ ..++..+......+.......++++ -++.|+.+.
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 467899999987643222 223366799999988663 4556555555444432211245664 378899763
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.7 Score=32.02 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=28.0
Q ss_pred CCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 41 VSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
.|+++++++++.. .+..++. ....+. ...++|-|+.|+|.......
T Consensus 114 VH~cLYfI~pt~~-~L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 114 VHACLYFIPPTGH-GLKPLDIEFMKRLS-----KRVNVIPVIAKADTLTPEEL 160 (281)
T ss_dssp EEEEEEEE-TTSS-SS-HHHHHHHHHHT-----TTSEEEEEESTGGGS-HHHH
T ss_pred cceEEEEEcCCCc-cchHHHHHHHHHhc-----ccccEEeEEecccccCHHHH
Confidence 6899999998753 3333322 223332 45789999999998764443
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=90.81 E-value=2.8 Score=26.41 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=43.1
Q ss_pred CCEEEEEEecCCccccHHhHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
+++.+.+.|||+...-.. .... ..+|.+++|..+.. .+..........+.+. +.++ -++.|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQE-VALDDVRKAIDMFKKV----NIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCch-hhHHHHHHHHHHHHhc----CCCeEEEEEcCCcc
Confidence 568899999988643222 2223 57899999997764 4566666666666543 3333 577999875
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.68 E-value=3.3 Score=29.88 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCEEEEEEeCCCCCChHHHHHH-HHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 41 VSAIVYVVDAADYDNLPVSRSE-LHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
.+++++.+.++- +++..++-. ...+. ..+.+|-|+.|+|.......
T Consensus 134 VH~cLYFI~Ptg-h~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT~~El 180 (373)
T COG5019 134 VHACLYFIRPTG-HGLKPLDIEAMKRLS-----KRVNLIPVIAKADTLTDDEL 180 (373)
T ss_pred eEEEEEEecCCC-CCCCHHHHHHHHHHh-----cccCeeeeeeccccCCHHHH
Confidence 689999998764 334333322 22222 34678889999998765443
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.55 Score=34.99 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=70.9
Q ss_pred CEEEEEEecCCccccHHhHHHHhcc----CCEEEEEEeCCCCCChH-HHHHHHHHHh-----------------------
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRA----VSAIVYVVDAADYDNLP-VSRSELHDLL----------------------- 67 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~----~~~~i~v~d~~~~~~~~-~~~~~~~~~~----------------------- 67 (137)
..++.+|-..|...+..+..-.+.. --.+++|+|.+.++.+- .+..|+..+.
T Consensus 72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~ 151 (472)
T PF05783_consen 72 LARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQ 151 (472)
T ss_pred CceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3679999998877777776655543 24788899999987532 2222222100
Q ss_pred --cC------C-----------------C-------------CCCCcEEEEeeCCCCCCC---------CCHHHHHHHhC
Q 032598 68 --SK------P-----------------S-------------LNGIPLLVLGNKIDKPEA---------LSKEDLMEQMG 100 (137)
Q Consensus 68 --~~------~-----------------~-------------~~~~p~ivv~nK~D~~~~---------~~~~~~~~~~~ 100 (137)
.+ . . .-++|++||++|+|.... ...+-+...++
T Consensus 152 ~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR 231 (472)
T PF05783_consen 152 WQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR 231 (472)
T ss_pred HHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH
Confidence 00 0 0 014899999999996431 11122222222
Q ss_pred CCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 101 LKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 101 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.... .-+...+.||++...|++.+.+.|.+.+.
T Consensus 232 ~~cL-~yGAsL~yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 232 TFCL-KYGASLIYTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred HHHH-hcCCeEEEeeccccccHHHHHHHHHHHhc
Confidence 1100 12345788999999999999988887764
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=3.3 Score=26.84 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=41.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
..+.+.++||||.. .......+..+|.++.+..++.. .+......++...... ..+.| ..++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEV--TDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhh--CCCCceEEEEEeccCCc
Confidence 35789999999873 34456678899999999988742 2233333333332211 12344 35667776543
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.39 E-value=2.1 Score=31.61 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=41.4
Q ss_pred CCEEEEEEecCCccccHHhHHHH------hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERY------CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
..+.+.++||+|+.......-.- .-+.|-+++|+|+.-.+.--...+-+++-+.. . =++++|.|-.
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i---t----GvIlTKlDGd 252 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI---T----GVILTKLDGD 252 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC---c----eEEEEcccCC
Confidence 35689999999987665332222 23578999999998866554444444444332 1 2456677653
|
|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.2 Score=29.31 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=41.1
Q ss_pred CCEEEEEEecCCccccHHhHH-HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWE-RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
+++.+.++||+|......... ...+.||.+++++.++. .++.......+.+.......+.+ ..++.||.+..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 468899999987653222111 11247999999997754 34444443333333221112333 45899999864
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.4 Score=28.87 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=38.6
Q ss_pred CCEEEEEEecCCccccHH----hHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS----MWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~----~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
++..+.++||+|...... .+..+++ ..+-+++|++++... +.+. ....+... .+ +-=++.+|.|-..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~---~~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEA---FG-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHH---SS-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhc---cc-CceEEEEeecCCC
Confidence 457899999999765442 2222222 477899999998642 2222 22222221 11 2356699999754
Q ss_pred C
Q 032598 89 A 89 (137)
Q Consensus 89 ~ 89 (137)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.71 Score=30.83 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=42.7
Q ss_pred EEEEEecCCccc-cH--HhHHHH---hcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcC---CCCCCCcEEEEeeCCC
Q 032598 18 TIKLWDLGGQPR-FR--SMWERY---CRA---VSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLNGIPLLVLGNKID 85 (137)
Q Consensus 18 ~~~~~Dt~g~~~-~~--~~~~~~---~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D 85 (137)
.+-+.|+|||-. |. +.++.. +++ --++++++|+.= +-+..+.+..++.. .-.-.+|.|-+.+|+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf---~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF---LVDSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch---hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 577899999843 21 222222 222 335566666532 11122222222211 1124688999999999
Q ss_pred CCCCCCHHHHHHHhC
Q 032598 86 KPEALSKEDLMEQMG 100 (137)
Q Consensus 86 ~~~~~~~~~~~~~~~ 100 (137)
+.+....+++.+.+.
T Consensus 176 Llk~~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 176 LLKDKNKKELERFLN 190 (273)
T ss_pred HhhhhhHHHHHHhcC
Confidence 987765555555554
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.33 Score=33.35 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.+|++.+.||+|....+..+ -.+ +..+.+++||-.+.|++++++.+-+.+.
T Consensus 231 yVp~iyvLNkIdsISiEELd---ii~-------~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSISIEELD---IIY-------TIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred eeeeeeeecccceeeeeccc---eee-------eccceeecccccccchHHHHHHHhhcch
Confidence 47999999999975432211 111 2335899999999999999999887664
|
|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=4.1 Score=27.37 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=43.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D 85 (137)
+++.+.++||||... ......+..+|.++..+.++. .++......+..+... ....++|..++.|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999754 344556788999988887654 2343333333332221 1124678889999986
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=88.38 E-value=1 Score=32.13 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=26.8
Q ss_pred CEEEEEEecCCccccHHhHHHHh-------ccCCEEEEEEeCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYC-------RAVSAIVYVVDAAD 52 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~-------~~~~~~i~v~d~~~ 52 (137)
+....+++|.|...-..+...+. -..++++.|+|+..
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 46778899999866655555442 14689999999975
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=88.32 E-value=3.8 Score=27.37 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=41.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
+++.+.++|+|+.... .....+..+|.+++|++++- .++.......+... . .+.+ ..++.|+.+..
T Consensus 107 ~~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~-~---~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAE-K---LGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHH-h---cCCceEEEEEECCCch
Confidence 3578999999876543 23345667999999998864 44554433332222 1 2334 46889999864
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=2.3 Score=30.05 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=40.0
Q ss_pred EEEEEEecCCccccHHhHHHHhc--------cCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+++|.|...-.++...++. ..++++.|+|+....... .......++ ...+ ++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi----~~AD---~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV----GYAD---RILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH----HhCC---EEEEeccccC
Confidence 56788999998665555554422 258999999997642211 111111122 2234 8899999987
Q ss_pred CC
Q 032598 88 EA 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 64
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.7 Score=31.12 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=37.8
Q ss_pred EEEEEEecCCccccHHhH----HHH--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMW----ERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
..+.++||+|........ ... ...++.+++|+|++... +.......+... -+ ..-++.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l~-i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---VG-IGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---CC-CCEEEEecccCCC
Confidence 478999999986653221 111 33588999999987642 222222333211 11 2356789999653
|
|
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=87.05 E-value=3.4 Score=27.75 Aligned_cols=65 Identities=8% Similarity=0.000 Sum_probs=42.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.+.+.++|+|+.... .....+..+|.+++++.++- .++......+..+... . ..+..++.|+.+.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~-~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEV-SAVRDADRVIGLLEAK-G--IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCc-HHHHHHHHHHHHHHHc-C--CCceEEEEeCcCc
Confidence 478899999876432 23345778999999988753 4555555554444332 1 2357788999875
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.02 E-value=2 Score=35.77 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=45.0
Q ss_pred EEEEEecCCcc--------ccHHhHHHHh---------ccCCEEEEEEeCCCCCChH---------HHHHHHHHHhcCCC
Q 032598 18 TIKLWDLGGQP--------RFRSMWERYC---------RAVSAIVYVVDAADYDNLP---------VSRSELHDLLSKPS 71 (137)
Q Consensus 18 ~~~~~Dt~g~~--------~~~~~~~~~~---------~~~~~~i~v~d~~~~~~~~---------~~~~~~~~~~~~~~ 71 (137)
+-.++||+|.. .....|.+++ +-.+|+|+.+|+.+.-+.+ .++.-++++... -
T Consensus 175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L 253 (1188)
T COG3523 175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-L 253 (1188)
T ss_pred ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-h
Confidence 56789998852 3345666552 3489999999988642211 122334444333 2
Q ss_pred CCCCcEEEEeeCCCCCC
Q 032598 72 LNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~ 88 (137)
....|+.+++||.|+..
T Consensus 254 ~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 254 HARLPVYLVLTKADLLP 270 (1188)
T ss_pred ccCCceEEEEecccccc
Confidence 35799999999999875
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=86.17 E-value=1.1 Score=30.67 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=22.9
Q ss_pred ceeEEEeecccCCChHHHHHHHHHhh
Q 032598 108 EVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 108 ~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
-.+++..||+++.|++.+++.+.+.+
T Consensus 240 ~~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 240 LVPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 46789999999999999999998764
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=85.84 E-value=4.6 Score=22.97 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=30.8
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHH
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH 64 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 64 (137)
+.+.++|+|+..... ....+..+|.++++++.+. .++......++
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~-~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP-LDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH-HHHHHHHHHHH
Confidence 678899998875433 2366788999999998764 34555544443
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=85.82 E-value=2.4 Score=28.87 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=40.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 87 (137)
+++.+.++||+|....... ...+..||.++++..++ ..++.........+.......+++. -++.|+.+..
T Consensus 114 ~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 3588999999875322111 12356799999887553 3455554444443332211234553 4788998754
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=85.55 E-value=4.8 Score=27.65 Aligned_cols=65 Identities=9% Similarity=-0.046 Sum_probs=41.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.+.+.++|||+... ......+..+|.+++|++++- .++.........+... . ....-++.|+.+.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~-~si~~~~~~~~~l~~~-~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEI-TAIRDADRVAGLLEAN-G--IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCCh-HHHHHHHHHHHHHHHc-C--CCceEEEEeccCh
Confidence 57899999987643 233445677999999987653 4455554444444332 1 1235678899874
|
|
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=84.14 E-value=6.3 Score=26.84 Aligned_cols=69 Identities=12% Similarity=-0.052 Sum_probs=43.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC----C-CCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP----S-LNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~-~~~~p~ivv~nK~D~~ 87 (137)
.+.+.+.|+|+..... ....+..+|.++++++++. .++......+..+.... . ..+.+..++.|+.+..
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 6889999998775433 2334688999999998874 45555555555443211 1 1123457788988853
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=83.65 E-value=8.3 Score=26.68 Aligned_cols=67 Identities=13% Similarity=-0.019 Sum_probs=39.5
Q ss_pred CEEEEEEecCCccccH-HhHH---HHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFR-SMWE---RYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~-~~~~---~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
+..+.++||+|..... ..+. ..++ ..+-.++|+|++.. .++.......+.. . -+-=++.+|.|-...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~-~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----I-HIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----C-CCCEEEEEeecCCCC
Confidence 5789999999986432 2222 2222 35678999998642 2333334443322 1 223677999998654
|
|
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=83.53 E-value=1.8 Score=27.65 Aligned_cols=70 Identities=9% Similarity=-0.060 Sum_probs=46.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
+.+.++|||+..... ....+..+|.++++++++.. +......+...+..... .....-++.||.+..+..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~-~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~~~ 164 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPS-SIEGAERLIELLKRLGK-KLKIIGVVINRVDPGNES 164 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHH-HHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCCHH
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHH-HHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCccc
Confidence 788999998764443 45677899999999998753 35555555554443211 112567899999876443
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=83.46 E-value=7.9 Score=29.67 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=37.7
Q ss_pred CEEEEEEecCCccccHHhHHH---Hhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWER---YCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+..+.++||+|.......... .+. .....++|++... +..+....+..+.. ..+.-+++||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 578999999997544322111 111 1235677777764 34444444443322 135678999999854
|
|
| >PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins | Back alignment and domain information |
|---|
Probab=83.12 E-value=0.61 Score=27.53 Aligned_cols=31 Identities=29% Similarity=0.145 Sum_probs=14.1
Q ss_pred EeeCCCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecc
Q 032598 80 LGNKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCK 117 (137)
Q Consensus 80 v~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 117 (137)
++||+|+... .....+.+.+.. ..++++||.
T Consensus 1 AaNK~D~~~a~~ni~kl~~~~~~-------~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAADENIEKLKEKYPD-------EPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-HHHHHHHHHHHTT--------EEEEE-HH
T ss_pred CCccccccccHhHHHHHHHhCCC-------CceeeccHH
Confidence 5799997432 233445554431 135666664
|
; PDB: 1WXQ_A. |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.81 E-value=7.9 Score=27.68 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=46.8
Q ss_pred CCEEEEEEecCCccccHH-hHHHH------hccCCE-----EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERY------CRAVSA-----IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~------~~~~~~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.++.+-+.||+|+..-.. ++... ++..+. +++++|++-...--...+.+++.... .=++.+
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~GiIlT 292 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGIILT 292 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceEEEE
Confidence 468899999999865432 22222 333333 88888998764333333444444332 246799
Q ss_pred CCCCCCC-CCHHHHHHHhCCC
Q 032598 83 KIDKPEA-LSKEDLMEQMGLK 102 (137)
Q Consensus 83 K~D~~~~-~~~~~~~~~~~~~ 102 (137)
|+|-... -..-.+...++.+
T Consensus 293 KlDgtAKGG~il~I~~~l~~P 313 (340)
T COG0552 293 KLDGTAKGGIILSIAYELGIP 313 (340)
T ss_pred ecccCCCcceeeeHHHHhCCC
Confidence 9995432 2234566666654
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=81.79 E-value=3.2 Score=26.54 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=38.1
Q ss_pred CEEEEEEecCCccccHHh--HHHH---hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSM--WERY---CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
+....++++.|...-..+ .... .-..+.++.|+|+............+..-... .+ ++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---AD---vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---AD---VIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----S---EEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---cC---EEEEeccccCChh
Confidence 456778888886444333 1111 22368999999997642222222322222222 44 8899999997654
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=81.42 E-value=9.8 Score=27.64 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=26.7
Q ss_pred EEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~ 52 (137)
..+.+.|+||..... ......++.+|+++.|+++.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 478999999975432 233345788999999999864
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=81.13 E-value=7.1 Score=27.20 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=40.1
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDK 86 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 86 (137)
++.+.++||+|........ ..+..||.++++++++- .++......++.+.......+++. -++.|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~~-~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNGF-DALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcceechhh-hhhhcCCEEEEEecCCH-HHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 5789999998763322221 23567999999887653 445554444433322211233443 478899874
|
|
| >KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.51 E-value=1.6 Score=31.65 Aligned_cols=76 Identities=21% Similarity=0.173 Sum_probs=47.4
Q ss_pred EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC--C---ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY--D---NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~--~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+....+.+++.|.||+..+...+-....+||..++++.+... + +.....+.. .++.. ...-.++++.+||+|.
T Consensus 77 ~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~eh-alla~-tlgv~qliv~v~k~D~ 154 (391)
T KOG0052|consen 77 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH-ALLAF-TLGVKQLIVGVNKMDS 154 (391)
T ss_pred ccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhh-hhhhc-cccceeeeEEeecccc
Confidence 334567889999999988877666667789988888777321 1 112211111 11111 2234678899999998
Q ss_pred CCC
Q 032598 87 PEA 89 (137)
Q Consensus 87 ~~~ 89 (137)
.+.
T Consensus 155 ~~~ 157 (391)
T KOG0052|consen 155 TEP 157 (391)
T ss_pred cCC
Confidence 654
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=80.41 E-value=11 Score=27.49 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=39.4
Q ss_pred CCEEEEEEecCCccccHHhHHHH---hc---cCCEEEEEEeCCCC-CChHHHHHHHHHHhcCCCCCC-CcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERY---CR---AVSAIVYVVDAADY-DNLPVSRSELHDLLSKPSLNG-IPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~---~~---~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~ 86 (137)
.+..+.++||+|........... +. ...-.++|++++.. +...+....+..........- -+.=++.+|.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 35688999999986544322222 22 23456899998863 333333222222221111000 123567899997
Q ss_pred CCC
Q 032598 87 PEA 89 (137)
Q Consensus 87 ~~~ 89 (137)
...
T Consensus 294 t~~ 296 (374)
T PRK14722 294 ASN 296 (374)
T ss_pred CCC
Confidence 543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 137 | ||||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 5e-56 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 1e-55 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 6e-55 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 2e-23 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 4e-23 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 2e-22 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 9e-22 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 4e-21 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 4e-21 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 4e-21 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 5e-21 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 5e-21 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 7e-21 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 8e-21 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 1e-20 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 2e-20 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 2e-20 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 4e-20 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 4e-20 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 5e-20 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 1e-19 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 5e-19 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 5e-19 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 5e-19 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 5e-19 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 7e-19 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 7e-19 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 7e-19 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 7e-19 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 8e-19 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 9e-19 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 1e-18 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 2e-18 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 4e-18 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 5e-18 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 2e-17 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 3e-17 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 4e-17 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 4e-17 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 3e-16 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 7e-16 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 1e-15 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 2e-15 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 2e-15 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 2e-15 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 2e-15 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 3e-15 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 3e-15 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 6e-14 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 2e-12 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 2e-12 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 4e-12 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 4e-11 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 1e-09 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 3e-09 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 4e-08 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 6e-08 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 1e-07 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 1e-07 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 1e-07 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 1e-07 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 1e-07 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 1e-07 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 2e-07 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 2e-07 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 2e-07 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 2e-07 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 3e-07 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 2e-06 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 2e-06 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 2e-06 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 6e-06 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 6e-06 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 7e-06 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 9e-06 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 9e-06 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 1e-05 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 1e-05 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 2e-05 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 2e-05 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 2e-05 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 2e-05 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 3e-05 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 3e-05 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 3e-05 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 3e-05 | ||
| 3clv_A | 208 | Crystal Structure Of Rab5a From Plasmodium Falcipar | 3e-05 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 3e-05 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 3e-05 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 3e-05 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 4e-05 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 5e-05 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 5e-05 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 5e-05 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 5e-05 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 6e-05 | ||
| 1n6i_A | 170 | Crystal Structure Of Human Rab5a A30p Mutant Comple | 7e-05 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 7e-05 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 7e-05 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 8e-05 | ||
| 1tu3_A | 171 | Crystal Structure Of Rab5 Complex With Rabaptin5 C- | 8e-05 | ||
| 1n6h_A | 170 | Crystal Structure Of Human Rab5a Length = 170 | 8e-05 | ||
| 1n6r_A | 170 | Crystal Structure Of Human Rab5a A30l Mutant Comple | 8e-05 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 1e-04 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 1e-04 | ||
| 1tu4_A | 171 | Crystal Structure Of Rab5-Gdp Complex Length = 171 | 1e-04 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 1e-04 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 2e-04 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 2e-04 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 2e-04 | ||
| 2hei_A | 179 | Crystal Structure Of Human Rab5b In Complex With Gd | 2e-04 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 2e-04 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 2e-04 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 3e-04 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 3e-04 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 3e-04 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 3e-04 | ||
| 1svk_A | 353 | Structure Of The K180p Mutant Of Gi Alpha Subunit B | 4e-04 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 5e-04 | ||
| 2hxs_A | 178 | Crystal Structure Of Rab28a Gtpase In The Inactive | 5e-04 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 5e-04 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 6e-04 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 7e-04 |
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171 | Back alignment and structure |
|
| >pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170 | Back alignment and structure |
|
| >pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 1e-67
Identities = 94/136 (69%), Positives = 114/136 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 51 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 110
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 111 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 170
Query: 121 NIDTVIDWLVKHSKSK 136
NID + WL++HSKS+
Sbjct: 171 NIDITLQWLIQHSKSR 186
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 5e-63
Identities = 48/136 (35%), Positives = 77/136 (56%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
IPT+GFN+ VT N+ ++WDLGG R W Y A++YVVD+ D D + +S+
Sbjct: 35 TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISK 94
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
SEL +L + L L+V NK D +A++ ++ +GL ++ DR+ + S T
Sbjct: 95 SELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGT 154
Query: 121 NIDTVIDWLVKHSKSK 136
+D ++WLV+ KS+
Sbjct: 155 GLDEAMEWLVETLKSR 170
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 9e-62
Identities = 48/137 (35%), Positives = 76/137 (55%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+PTVG N+ + N++ ++WDLGGQ R W Y A++YVVD+ D D + V++
Sbjct: 50 TVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAK 109
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL+ LL + L LL+ NK D P+A S+ ++ EQ+G+ SI +R S K
Sbjct: 110 HELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGD 169
Query: 121 NIDTVIDWLVKHSKSKS 137
+ +DWLV+ + +
Sbjct: 170 GLVEGMDWLVERLREQG 186
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 6e-58
Identities = 37/138 (26%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
++PT+GF++ K +++ ++D+ GQ R+R++WE Y + AI++V+D++D + V++
Sbjct: 51 ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAK 110
Query: 61 SELHDLLSKPSLNG--IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKN 118
EL LL+ P + IP+L NK+D +A++ + + + L++I D+
Sbjct: 111 EELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK 170
Query: 119 STNIDTVIDWLVKHSKSK 136
+ +DWL ++
Sbjct: 171 GEGLQEGVDWLQDQIQTV 188
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 9e-57
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT ++ GN+ +DLGG + R +W+ Y V+ IV++VDAAD + +R
Sbjct: 51 LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR 110
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-------DREVCCYM 113
EL L + L +P ++LGNKID P A+S+ +L +GL + T R V +M
Sbjct: 111 VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170
Query: 114 ISCKNSTNIDTVIDWLVKH 132
S WL ++
Sbjct: 171 CSVVMRNGYLEAFQWLSQY 189
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 6e-56
Identities = 39/136 (28%), Positives = 67/136 (49%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT GFN++ V + +WD+GGQ + R W Y ++YV+D+AD +
Sbjct: 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 103
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL +LL + L+ +P+L+ NK D A ++ E + L +I DR S
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163
Query: 121 NIDTVIDWLVKHSKSK 136
+ ++W+ K+ +K
Sbjct: 164 GVQDGMNWVCKNVNAK 179
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 9e-56
Identities = 45/136 (33%), Positives = 71/136 (52%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
PT+GFN+ ++ N+ + +WDLGGQ R W Y +A+++VVD+ D D + +
Sbjct: 46 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS 105
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
ELH +L + L LLV NK D+P ALS ++ +++ L + DR S
Sbjct: 106 KELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 165
Query: 121 NIDTVIDWLVKHSKSK 136
I +DWL+ K +
Sbjct: 166 GITEGLDWLIDVIKEE 181
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 3e-55
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D + + +R
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 89 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL +++
Sbjct: 149 LYEGLDWLSNQLRNQ 163
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 5e-55
Identities = 44/136 (32%), Positives = 67/136 (49%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT+GFN++ + + +WD+GGQ RS W Y + +++VVD+AD + +
Sbjct: 46 ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ 105
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL LL + L G LL+ NK D P ALS + E + L SI S
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE 165
Query: 121 NIDTVIDWLVKHSKSK 136
++ IDWL+ S+
Sbjct: 166 DLLPGIDWLLDDISSR 181
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 2e-54
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+PT+ ++T +T +DLGG + R +W+ Y A++ IV++VD AD++ L S+
Sbjct: 54 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 113
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG------------LKSITDREV 109
EL L++ ++ +P+L+LGNKID+PEA+S+E L E G LK + R +
Sbjct: 114 ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173
Query: 110 CCYMISCKNSTNIDTVIDWLVKH 132
+M S W+ ++
Sbjct: 174 EVFMCSVLKRQGYGEGFRWMAQY 196
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-53
Identities = 41/135 (30%), Positives = 67/135 (49%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N+ +WD+GGQ + R +W Y + +++VVD+ D + + S
Sbjct: 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAD 117
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L + L LLV NK D P A+ +L +++GL+ + R T
Sbjct: 118 ELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL +
Sbjct: 178 LYDGLDWLSHELSKR 192
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 2e-52
Identities = 36/135 (26%), Positives = 65/135 (48%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
PT+G N+ ++ N +WD+GGQ RS W Y ++ VVD+ D + + V+R
Sbjct: 45 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 104
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL+ +L+ L LL+ NK D E ++ ++ + + L SI D +
Sbjct: 105 ELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 164
Query: 122 IDTVIDWLVKHSKSK 136
+ ++W++ K +
Sbjct: 165 LCQGLEWMMSRLKIR 179
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 6e-50
Identities = 35/131 (26%), Positives = 63/131 (48%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
PT+G N+ ++ N +WD+GGQ RS W Y ++ VVD+ D + + V+R
Sbjct: 50 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 109
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL+ +L+ L LL+ NK D E ++ ++ + + L SI D +
Sbjct: 110 ELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169
Query: 122 IDTVIDWLVKH 132
+ ++W++
Sbjct: 170 LCQGLEWMMSR 180
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 4e-43
Identities = 40/135 (29%), Positives = 73/135 (54%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D + + +R
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 313
Query: 122 IDTVIDWLVKHSKSK 136
+ +DWL +++
Sbjct: 314 LYEGLDWLSNQLRNQ 328
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 6e-31
Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 15/145 (10%)
Query: 2 IPTVGFNM-----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
T+ F+ +V L+ + GQ + + + R V IV+V D+A + L
Sbjct: 54 ERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRL 112
Query: 57 PVSRSELHDLLS-----KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 111
+ + ++ +L+ +P+++ NK D P+AL E + + + +
Sbjct: 113 RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----EGKFPV 168
Query: 112 YMISCKNSTNIDTVIDWLVKHSKSK 136
+ + + + ++
Sbjct: 169 LEAVATEGKGVFETLKEVSRLVLAR 193
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-31
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 9/141 (6%)
Query: 2 IPTVGFNMRKVTKGN---VTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADYD-NL 56
++ + N ++ L DL G R + +R+ + A+V+VVD+A + +
Sbjct: 36 QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREV 95
Query: 57 PVSRSELHDLLSKPSL--NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 114
L+ +L N LL+ NK D A S + + +Q+ + T R
Sbjct: 96 KDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT--RSA 153
Query: 115 SCKNSTNIDTVIDWLVKHSKS 135
+ + T L K K
Sbjct: 154 APSTLDSSSTAPAQLGKKGKE 174
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-29
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 11/138 (7%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY----CRAVSAIVYVVDAA-DYDNL 56
+ + + + L D G + R Y + V ++++VD+ D L
Sbjct: 41 VVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 99
Query: 57 PVSRSELHDLLSKPSL---NGIPLLVLGNKIDKPEALSKEDLMEQMG--LKSITDREVCC 111
+ L D+LS NGI +L+ NK + A + + + ++ + +R
Sbjct: 100 TTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159
Query: 112 YMISCKNSTNIDTVIDWL 129
+ D + L
Sbjct: 160 LNEVERKINEEDYAENTL 177
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 6e-29
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY----CRAVSAIVYVVDAA-DYDNL 56
+ + + + L D G + R Y + V ++++VD+ D L
Sbjct: 77 VVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 135
Query: 57 PVSRSELHDLLSKPSL---NGIPLLVLGNKIDKPEALSKEDLMEQMGL 101
+ L D+LS NGI +L+ NK + A + + +
Sbjct: 136 TTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 3e-17
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 12/131 (9%)
Query: 2 IPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRSMW---ERYCRAVSAIVYVVDAADYDNLP 57
T ++ V ++WD GQ F E R A++YV+DA D
Sbjct: 53 ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEA 112
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLM--------EQMGLKSITDREV 109
++R + + + V +K+D K + + + + +
Sbjct: 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172
Query: 110 CCYMISCKNST 120
Y+ S + +
Sbjct: 173 SFYLTSIYDHS 183
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 1e-16
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 22 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPSLNGIPLL 78
G + ++ C V +YV +A + H +G PLL
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL 166
Query: 79 VLG-NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC--KNSTNIDTVIDWLVKHSKS 135
VL + + L ++ L + + + + T I+W+++ +S
Sbjct: 167 VLSCISQGDVKRMPCFYLAHELHLNLL-NHP--WLVQDTEAETLTGFLNGIEWILEEVES 223
Query: 136 KS 137
K
Sbjct: 224 KR 225
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 5e-15
Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 1 MIPTVGFNMRKVT-KGNVTIKLWDLGGQPRF-----RSMWERYCRAVSAIVYVVDAADYD 54
+ T+ + GN+T+ LWD GGQ F + + V +++V D +
Sbjct: 35 LGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTE 94
Query: 55 NLPVSRSELHDLLSKPSLN--GIPLLVLGNKIDKPEALSKEDLMEQM------GLKSITD 106
L L + + VL +K+D + +E+L + M
Sbjct: 95 VLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153
Query: 107 REVCCYMISCKNSTNIDTV 125
+ + S + +
Sbjct: 154 PNLIGFPTSIWDESLYKAW 172
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-14
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
PT+G F ++VT T+K WD GQ RF S+ Y R A + V D +
Sbjct: 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFI 92
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 117
+R + +L + S I + ++GNKID + + + + G K ++ + + S K
Sbjct: 93 KARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAK 151
Query: 118 NSTNIDTV 125
N++ V
Sbjct: 152 TGENVNDV 159
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 6e-14
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 22/137 (16%)
Query: 2 IPTVG--FNMRKVT-KGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADY 53
T+G F +R++T GN+ + L WD+GGQ M ++Y A + VY + + +
Sbjct: 36 KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSF 95
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDRE 108
+NL + + + + + LV GNKID + E ++ G S
Sbjct: 96 ENLEDWYTVVKKVSEESETQPLVALV-GNKIDLEHMRTIKPEKHLRFCQENGFSSH---F 151
Query: 109 VCCYMISCKNSTNIDTV 125
V S K ++
Sbjct: 152 V-----SAKTGDSVFLC 163
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-13
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 25/141 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YD 54
+ T+G + IK WD GQ +F + + Y + + D Y
Sbjct: 45 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 104
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED---LMEQMGLKSITDREVCC 111
N+P +L + IP+++ GNK+D + K + L+
Sbjct: 105 NVPNWHRDLVRV-----CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ--------- 150
Query: 112 YM-ISCKNSTNIDTVIDWLVK 131
Y IS K++ N + WL +
Sbjct: 151 YYDISAKSNYNFEKPFLWLAR 171
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-13
Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 27/144 (18%)
Query: 2 IPTVG---FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADY 53
TVG + + IK WD GQ + + + Y A AI + V
Sbjct: 41 NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC 100
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDRE 108
NL E ++ N P++V NKID +SK+ +++ +
Sbjct: 101 QNLARWVKEFQAVVG----NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE------ 150
Query: 109 VCCYM-ISCKNSTNIDTVIDWLVK 131
Y IS K + N L +
Sbjct: 151 ---YFEISAKTAHNFGLPFLHLAR 171
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 5e-13
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 5/119 (4%)
Query: 23 DLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPSLNGIPLLV 79
G + ++ C V +YV +A + H +G PLLV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 80 LG-NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137
L + + L ++ L + + + T I+W+++ +SK
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 6e-13
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 12/143 (8%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F ++V + + + WD GQ RF+S+ + R A + V+ V +
Sbjct: 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYM- 113
L R E S P +VLGNKID L + + + Y
Sbjct: 98 TLDSWRDEFLIQASPRDPENFPFVVLGNKID----LENRQVATKRAQAWCYSKNNIPYFE 153
Query: 114 ISCKNSTNIDTVIDWLVKHSKSK 136
S K + N++ + +++ +
Sbjct: 154 TSAKEAINVEQAFQTIARNALKQ 176
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 6e-13
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F + + + + WD GQ RFRS+ + R + + + V D+ +
Sbjct: 37 FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQ 96
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKEDLMEQMGLKSITDREVCCYM 113
NL + E P ++LGNKID E +S E+ D Y
Sbjct: 97 NLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEE-----AQAWCRDNGDYPYF 151
Query: 114 -ISCKNSTNIDTVIDWLVKHSKSK 136
S K++TN+ + V+ +
Sbjct: 152 ETSAKDATNVAAAFEEAVRRVLAT 175
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 7e-13
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 21/149 (14%)
Query: 2 IPTVG--FNMRKVT-KGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADY 53
T+G F ++VT G+ + WD GQ RF+S+ + R A + VY V +A+ +
Sbjct: 38 KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSF 97
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE---ALSKED---LMEQMGLKSITDR 107
+N+ R E + S P ++LGNKID E +S++ L + +G
Sbjct: 98 ENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG------- 150
Query: 108 EVCCYMISCKNSTNIDTVIDWLVKHSKSK 136
++ ++ S KN+ N+DT + + + + +
Sbjct: 151 DIPLFLTSAKNAINVDTAFEEIARSALQQ 179
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-12
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 1 MIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADY 53
+ T+G F ++ ++ KL WD GQ RFR++ Y R A I VY V +
Sbjct: 44 LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTF 103
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKED---LMEQMGLKSITDREV 109
L +EL ++ N I +++GNKIDK + + + + + I E
Sbjct: 104 VKLDNWLNELETYCTR---NDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFI---EA 157
Query: 110 CCYMISCKNSTNIDTVIDWLVK 131
S K + + LV+
Sbjct: 158 -----SAKTCDGVQCAFEELVE 174
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 5e-12
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 8/135 (5%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
P + WD GGQ + + + S + ++D+ N
Sbjct: 83 APNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLR 142
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
+ P++V+ NKID+ ++ ++ + E + ISCKN
Sbjct: 143 HIEKY-----GGKSPVIVVMNKIDENP---SYNIEQKKINERFPAIENRFHRISCKNGDG 194
Query: 122 IDTVIDWLVKHSKSK 136
++++ L
Sbjct: 195 VESIAKSLKSAVLHP 209
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-11
Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW---ERYCRAVSAIVYVVDAADYDNLPVS 59
T ++ + + + +L GQ + ER ++V A+VYV+D+ D ++
Sbjct: 33 STSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAIT 91
Query: 60 RSELHDLLSKPSLN--GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITD--------REV 109
L ++ I + VL +K+D K D + ++ + +V
Sbjct: 92 N--LAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149
Query: 110 CCYMISCKNST 120
Y+ S + +
Sbjct: 150 SFYLTSIFDHS 160
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-11
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I T+G F ++ V +KL WD GQ RFR++ Y R A+ I VY + D +
Sbjct: 33 ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFT 92
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKED---LMEQMGLKSITDREVC 110
N+ +++ + LL++GNK D ++ + L +++G+ I E
Sbjct: 93 NIKQWFKTVNEHAND----EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI---ES- 144
Query: 111 CYMISCKNSTNIDTVIDWLVKHSKSK 136
S KN N++ + L K + K
Sbjct: 145 ----SAKNDDNVNEIFFTLAKLIQEK 166
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-11
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F R + TIK WD G R+R++ Y R AV A+ VY + Y+
Sbjct: 59 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 118
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N+ EL D I ++++GNK D A+ ++ E+ GL I E
Sbjct: 119 NVERWLKELRDHADS----NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFI---ET 171
Query: 110 CCYMISCKNSTNIDTV 125
S +STN++
Sbjct: 172 -----SALDSTNVEAA 182
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-11
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 24/147 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I TVG F + + V +KL WD GQ RFRS+ Y R A + + +Y V + A +D
Sbjct: 41 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFD 100
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N+ +E+H+ + L++LGNK+D + +ED L ++ GL + E
Sbjct: 101 NIQAWLTEIHEYAQH----DVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFM---ET 153
Query: 110 CCYMISCKNSTNIDTVIDWLVKHSKSK 136
S K N+D + K K +
Sbjct: 154 -----SAKTGLNVDLAFTAIAKELKRR 175
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-11
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 24/142 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F R + TIK WD GQ R+R + Y R AV A+ VY + Y+
Sbjct: 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYE 94
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N+ EL D I ++++GNK D A+ ++ E+ L I E
Sbjct: 95 NVERWLKELRDHADS----NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFI---ET 147
Query: 110 CCYMISCKNSTNIDTVIDWLVK 131
S +STN++ ++
Sbjct: 148 -----SALDSTNVEEAFKNILT 164
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 3e-11
Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 25/147 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F R++ + ++L WD GQ F ++ + Y R A + + V+ D ++
Sbjct: 35 KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE 94
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+ R ++ + IP ++ NKID + + E+ L +++ L+
Sbjct: 95 AISSWREKVVAEVG-----DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFY---RT 146
Query: 110 CCYMISCKNSTNIDTVIDWLVKHSKSK 136
S K N+ V +L + K
Sbjct: 147 -----SVKEDLNVSEVFKYLAEKHLQK 168
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-11
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
+ TVG F ++ V + +KL WD GQ R+R++ Y R A+ I +Y + + ++
Sbjct: 53 VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN 112
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+ +++ ++++GNK D E + E L EQ+G E
Sbjct: 113 AVQDWATQIKTYSWD----NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFF---EA 165
Query: 110 CCYMISCKNSTNIDTVIDWLVK 131
S K + ++ + LV
Sbjct: 166 -----SAKENISVRQAFERLVD 182
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-11
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F+ R V G +K WD G R+R++ Y R AV A+ V+ + Y
Sbjct: 55 RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA 114
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+ EL+D I ++++GNK D + + E+ E GL + E
Sbjct: 115 VVERWLKELYDHAEA----TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFL---ET 167
Query: 110 CCYMISCKNSTNIDTV 125
S +STN++
Sbjct: 168 -----SALDSTNVELA 178
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-11
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I T+G F +R + IKL WD GQ RFR++ Y R A+ + VY + + +D
Sbjct: 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD 97
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N+ + + S + ++LGNK D + +SKE L G+K + E
Sbjct: 98 NIRNWIRNIEEHASA----DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFM---ET 150
Query: 110 CCYMISCKNSTNIDTVIDWLVKHSKSK 136
S K + N++ L + K+K
Sbjct: 151 -----SAKANINVENAFFTLARDIKAK 172
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 5e-11
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 26/148 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F R + IK WD GQ R+R++ Y R AV A+ VY + ++ Y+
Sbjct: 43 KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYE 102
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N SEL + + + ++GNK D A+ E+ ++ L
Sbjct: 103 NCNHWLSELRENADD----NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL------- 151
Query: 110 CCYM-ISCKNSTNIDTVIDWLVKHSKSK 136
+ S NS N+D + L+ K
Sbjct: 152 --FTETSALNSENVDKAFEELINTIYQK 177
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-11
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 24/142 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
+ TVG F ++ V + + IKL WD GQ R+R++ Y R A+ + +Y + + +
Sbjct: 52 VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFA 111
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+ +++ ++++GNK D + + ED L + +G + E
Sbjct: 112 AVQDWATQIKTYSWD----NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFF---EA 164
Query: 110 CCYMISCKNSTNIDTVIDWLVK 131
S K + N+ V + LV
Sbjct: 165 -----SAKENINVKQVFERLVD 181
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 7e-11
Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 24/142 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
+ TVG F ++ + + + IKL WD G R+R++ Y R A+ I +Y + + ++
Sbjct: 38 VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFN 97
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+ +++ +L++GNK D + +S E L + +G + E
Sbjct: 98 AVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFF---EA 150
Query: 110 CCYMISCKNSTNIDTVIDWLVK 131
S K++ N+ + LV
Sbjct: 151 -----SAKDNINVKQTFERLVD 167
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-10
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 30/154 (19%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F M+ + L WD GQ RFRS+ + Y R A + +Y V +
Sbjct: 58 SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFL 117
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED-----------LMEQMGLKS 103
N+ + D + +P++++GNK D + + E L G
Sbjct: 118 NIREWVDMIEDAAHE----TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALF 173
Query: 104 ITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137
E S K+ +NI + L + K ++
Sbjct: 174 C---ET-----SAKDGSNIVEAVLHLAREVKKRT 199
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-10
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I T+G F +R + TIKL WD GQ RFR++ Y R A I VY V D ++
Sbjct: 63 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 122
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N+ E+ S+ + L++GNK D + + +G+ + E
Sbjct: 123 NVKQWLQEIDRYASE----NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFL---ET 175
Query: 110 CCYMISCKNSTNIDTVIDWLVKHSKSK 136
S KN+TN++ + K +
Sbjct: 176 -----SAKNATNVEQSFMTMAAEIKKR 197
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-10
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I T+G F +K+ G + L WD GQ RF ++ Y R + AI VY + D +
Sbjct: 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+ EL +L N I L ++GNKID + +S ++ E +G K
Sbjct: 96 KVKNWVKELRKMLG----NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY---HT 148
Query: 110 CCYMISCKNSTNIDTV 125
S K + I+ +
Sbjct: 149 -----SAKQNKGIEEL 159
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-10
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F R + IKL WD GQ RFR++ Y R A A+ VY + + Y+
Sbjct: 45 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN 104
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+L ++ +L + ++++GNK D ++ E+ E+ GL + E
Sbjct: 105 HLSSWLTDARNLTNP----NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFL---EA 157
Query: 110 CCYMISCKNSTNIDTV 125
S K N++
Sbjct: 158 -----SAKTGENVEDA 168
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-10
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 23/141 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I T+G F ++ V +KL WD GQ RFR++ Y R A+ I VY V D +
Sbjct: 50 ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFT 109
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKED---LMEQMGLKSITDREVC 110
N+ +++ + LL++GNK D ++ + L +++G+ I E
Sbjct: 110 NIKQWFKTVNEHAND----EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFI---ES- 161
Query: 111 CYMISCKNSTNIDTVIDWLVK 131
S KN N++ + L K
Sbjct: 162 ----SAKNDDNVNEIFFTLAK 178
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-10
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F ++ V +KL WD GQ RFRS+ + Y R A + I Y + +
Sbjct: 56 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFR 115
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
LP E+ S + +++GNKID E +S++ E + + E
Sbjct: 116 CLPEWLREIEQYASN----KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYL---ET 168
Query: 110 CCYMISCKNSTNIDTV 125
S K S N++ +
Sbjct: 169 -----SAKESDNVEKL 179
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-10
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F R V IKL WD GQ FRS+ Y R A A+ VY + ++
Sbjct: 51 DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 110
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+L + S + ++++GNK D + +E+ + GL + E
Sbjct: 111 HLTSWLEDARQHSSS----NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFM---ET 163
Query: 110 CCYMISCKNSTNIDTV 125
S K + N++
Sbjct: 164 -----SAKTACNVEEA 174
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-10
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I T+G F +R + TIKL WD GQ RFR++ Y R A I VY V D ++
Sbjct: 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFN 105
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N+ E+ S+ + L++GNK D + + +G+ + E
Sbjct: 106 NVKQWLQEIDRYASE----NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFL---ET 158
Query: 110 CCYMISCKNSTNIDTVIDWLVKHSKSK 136
S KN+TN++ + K +
Sbjct: 159 -----SAKNATNVEQSFMTMAAEIKKR 180
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-10
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F R V G T+KL WD GQ RFRS+ Y R A A+ VY + Y+
Sbjct: 55 NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 114
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+L ++ L S I +++ GNK D ++ + ++ L + E
Sbjct: 115 SLAAWLTDARTLASP----NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFL---ET 167
Query: 110 CCYMISCKNSTNIDTV 125
S N++
Sbjct: 168 -----SALTGENVEEA 178
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-10
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 25/148 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F M+ + +KL WD GQ RFR++ + Y R A AI Y + + +
Sbjct: 59 GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFL 118
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
++P ++ I L++GNK D E +S + L E +
Sbjct: 119 SVPHWIEDVRKYAGS----NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILC------ 168
Query: 110 CCYM-ISCKNSTNIDTVIDWLVKHSKSK 136
+ S K+S+N++ + +
Sbjct: 169 --AIETSAKDSSNVEEAFLRVATELIMR 194
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-10
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 24/147 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F + + G +KL WD GQ RFRS+ Y R A A+ VY + Y+
Sbjct: 40 NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYN 99
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
L ++ L S+ I +++ GNK D ++ + ++ L + E
Sbjct: 100 ALTNWLTDARMLASQ----NIVIILCGNKKDLDADREVTFLEASRFAQENELMFL---ET 152
Query: 110 CCYMISCKNSTNIDTVIDWLVKHSKSK 136
S N++ + +K
Sbjct: 153 -----SALTGENVEEAFVQCARKILNK 174
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 2e-10
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
PT+G F + V N K WD G RFR++ Y R + +AI VY + +
Sbjct: 36 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFS 95
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
L EL I + + GNK D + + + D + + + E
Sbjct: 96 TLKNWVRELRQHGP----PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFV---ET 148
Query: 110 CCYMISCKNSTNIDTV 125
S KN+ NI+ +
Sbjct: 149 -----SAKNAININEL 159
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-10
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F + + + T++L WD GQ RFRS+ Y R + A+ VY + + +
Sbjct: 44 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFH 103
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
++ + + ++++GNK D + +S E+ +++ + I E
Sbjct: 104 QTSKWIDDVRTERG----SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI---ET 156
Query: 110 CCYMISCKNSTNIDTV 125
S K N+ +
Sbjct: 157 -----SAKAGYNVKQL 167
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-10
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F + + + T++L WD G RFRS+ Y R + A+ VY + + +
Sbjct: 46 QATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 105
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
++ + + ++++GNK D + +S E+ +++ + I E
Sbjct: 106 QTTKWIDDVRTERG----SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFI---ET 158
Query: 110 CCYMISCKNSTNIDTV 125
S K N+ +
Sbjct: 159 -----SAKAGYNVKQL 169
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-10
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 25/142 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I T+G F +R V +KL WD GQ RFR++ Y R I VY V A +
Sbjct: 39 ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFV 98
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
N+ E++ + + + +++GNK D PE + ED QMG++ E
Sbjct: 99 NVKRWLHEINQ-----NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLF---ET 150
Query: 110 CCYMISCKNSTNIDTVIDWLVK 131
S K + N++ + + + +
Sbjct: 151 -----SAKENVNVEEMFNCITE 167
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-10
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 24/142 (16%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
I T+G F ++ V T+KL WD GQ RFR++ Y R + I VY V D ++
Sbjct: 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 97
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
+ + E+ + + L++GNK D + + + + + + E
Sbjct: 98 GVKMWLQEIDRYATS----TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFL---ET 150
Query: 110 CCYMISCKNSTNIDTVIDWLVK 131
S +STN++ + +
Sbjct: 151 -----SALDSTNVEDAFLTMAR 167
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 7e-10
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F + V + T+K WD GQ R+ S+ Y R A +AI VY + + +
Sbjct: 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
EL S I + + GNK D A+ ++ + L + E
Sbjct: 96 RAKNWVKELQRQAS----PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFM---ET 148
Query: 110 CCYMISCKNSTNIDTV 125
S K S N++ +
Sbjct: 149 -----SAKTSMNVNEI 159
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 8e-10
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 19/145 (13%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
TVG F ++ V I+L WD GQ RF S+ Y R A I VY + +D
Sbjct: 56 KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFD 115
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCY 112
+LP + S+ LL++GNK+D ++++ G K +
Sbjct: 116 DLPKWMKMIDKYASE----DAELLLVGNKLDCETDREITRQQ-----GEKFAQQITGMRF 166
Query: 113 M-ISCKNSTNIDTVIDWLVKHSKSK 136
S K++ N+D + LV K
Sbjct: 167 CEASAKDNFNVDEIFLKLVDDILKK 191
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-10
Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 27/143 (18%)
Query: 2 IPTVG--FNMRKVT---KGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAAD-- 52
TVG + K + L WD G+ F S + + + V D +
Sbjct: 34 SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ 93
Query: 53 --YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--------ALSKEDLMEQMGLK 102
D + + S P++++G +D + + ++L+ + G
Sbjct: 94 AEVDAMKPWLFNIKARASS-----SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFP 148
Query: 103 SITDREVCCYMISCKNSTNIDTV 125
+I D ++ + + S + +
Sbjct: 149 AIRD---YHFVNATEESDALAKL 168
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 8e-10
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
PT+G F + V GN K WD GQ RF S+ Y R + +A+ VY + +
Sbjct: 53 SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFY 112
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
L EL + I + + GNK D + + +D E +G + E
Sbjct: 113 TLKKWVKELKEHGP----ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV---ET 165
Query: 110 CCYMISCKNSTNIDTV 125
S KN+ NI+ +
Sbjct: 166 -----SAKNAINIEEL 176
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-09
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 23/141 (16%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ + RK T L D GQ + +M ++Y R V+ + + +++
Sbjct: 33 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKED---LMEQMGLKSITDREVCC 111
+ R ++ + +P++++GNK D + L G
Sbjct: 93 IHQYREQIKRVKDSDD---VPMVLVGNKSDLAARTVESRQAQDLARSYG---------IP 140
Query: 112 YM-ISCKNSTNIDTVIDWLVK 131
Y+ S K ++ LV+
Sbjct: 141 YIETSAKTRQGVEDAFYTLVR 161
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-09
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 22/141 (15%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
IPT+ R+V L D G +F +M A +V+ V +
Sbjct: 38 IPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEE 97
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKED---LMEQMGLKSITDREVCC 111
L + + K S+ IP++++GNK D+ + + + + ++ C
Sbjct: 98 LGPIYKLIVQI--KGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK---------CA 146
Query: 112 YM-ISCKNSTNIDTVIDWLVK 131
+M S K + N+ + L+
Sbjct: 147 FMETSAKMNYNVKELFQELLT 167
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-09
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
IPTV R+V L D G +F +M A +VY + +
Sbjct: 33 IPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEE 92
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
L ++ ++ K + IP++++GNK D+ + + L C
Sbjct: 93 LKPIYEQICEI--KGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK---------C 141
Query: 111 CYM-ISCKNSTNIDTVIDWLVKHSKSK 136
+M S K + N+ + L+ K +
Sbjct: 142 AFMETSAKLNHNVKELFQELLNLEKRR 168
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-09
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYD 54
T+G F + + + T+K WD GQ R+ S+ Y R A +AI V+ V + A ++
Sbjct: 42 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFE 101
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREV 109
EL + + + + GNK D + ++ ED ++ GL + E
Sbjct: 102 RAKKWVQELQAQGN----PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFM---ET 154
Query: 110 CCYMISCKNSTNIDTV 125
S K +TN+ +
Sbjct: 155 -----SAKTATNVKEI 165
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 2e-09
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 2 IPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ F +++ + L D G +F SM + Y + +VY +V+ + +
Sbjct: 33 DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD 92
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
+ R ++ + +P++++GNK+D +S + L E+ G C
Sbjct: 93 IKPMRDQIIRVKRYEK---VPVILVGNKVDLESEREVSSSEGRALAEEWG---------C 140
Query: 111 CYM-ISCKNSTNIDTVIDWLVK 131
+M S K+ T +D + +V+
Sbjct: 141 PFMETSAKSKTMVDELFAEIVR 162
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-09
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 24/142 (16%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ K+ L D GQ + + Y ++ +VY V ++
Sbjct: 36 DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 95
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
+ V +L D++ K IP++++GNK D +S E+ L E
Sbjct: 96 IKVIHGKLLDMVGKVQ---IPIMLVGNKKDLHMERVISYEEGKALAESWN---------A 143
Query: 111 CYM-ISCKNSTNIDTVIDWLVK 131
++ S K + V ++
Sbjct: 144 AFLESSAKENQTAVDVFRRIIL 165
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 4e-09
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFR-SMWERYCRAVSAIVYVVDAAD---Y 53
T+G F R V IK+ WD GQ RFR SM + Y R V A+V+V D + +
Sbjct: 50 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASF 109
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLK 102
+LP E L N IP +++GNK D + + + +
Sbjct: 110 HSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP 160
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 4e-09
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 23/141 (16%)
Query: 2 IPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ + RK V T L D GQ + +M ++Y R V+ + ++ + +
Sbjct: 51 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFAD 110
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKED---LMEQMGLKSITDREVCC 111
+ + R ++ + +P++++GNK D P + + L + G
Sbjct: 111 INLYREQIKRVKDSDD---VPMVLVGNKCDLPTRTVDTKQAHELAKSYG---------IP 158
Query: 112 YM-ISCKNSTNIDTVIDWLVK 131
++ S K ++ LV+
Sbjct: 159 FIETSAKTRQGVEDAFYTLVR 179
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-09
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 24/142 (16%)
Query: 2 IPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ + + + +L D GQ F +M E+Y RA +V+ + D ++
Sbjct: 39 DPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNE 98
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
+ +++ + + P++++GNK D + + +
Sbjct: 99 VGKLFTQILRVKDRDD---FPVVLVGNKADLESQRQVPRSEASAFGASHH---------V 146
Query: 111 CYM-ISCKNSTNIDTVIDWLVK 131
Y S K N+D + LV+
Sbjct: 147 AYFEASAKLRLNVDEAFEQLVR 168
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 9e-09
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 23/141 (16%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ + RK T L D GQ + +M ++Y R V+ + + +++
Sbjct: 34 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 93
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKED---LMEQMGLKSITDREVCC 111
+ R ++ + +P++++GNK D P + + L G
Sbjct: 94 IHHYREQIKRVKDSED---VPMVLVGNKCDLPSRTVDTKQAQDLARSYG---------IP 141
Query: 112 YM-ISCKNSTNIDTVIDWLVK 131
++ S K +D LV+
Sbjct: 142 FIETSAKTRQGVDDAFYTLVR 162
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 9e-09
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 24/142 (16%)
Query: 2 IPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PTV K VT G L D GQ + + + V +VY V +
Sbjct: 54 DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQV 113
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
+ +LH+ K +P++++GNK D + + L E G
Sbjct: 114 IESLYQKLHEGHGKTR---VPVVLVGNKADLSPEREVQAVEGKKLAESWG---------A 161
Query: 111 CYM-ISCKNSTNIDTVIDWLVK 131
+M S + + + +++
Sbjct: 162 TFMESSARENQLTQGIFTKVIQ 183
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 2e-08
Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 24/147 (16%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT + RK +++ D GQ + ++ + Y R+ V+ + + +
Sbjct: 34 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 93
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
R ++ + + +P L++GNK D + +S E+ +Q
Sbjct: 94 TADFREQILRVKEDEN---VPFLLVGNKSDLEDKRQVSVEEAKNRADQWN---------V 141
Query: 111 CYM-ISCKNSTNIDTVIDWLVKHSKSK 136
Y+ S K N+D V L++ +++
Sbjct: 142 NYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-08
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 24/142 (16%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT + RK +++ D GQ + ++ + Y R+ V+ + + +
Sbjct: 48 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 107
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
R ++ + + +P L++GNK D + +S E+ EQ
Sbjct: 108 TADFREQILRVKEDEN---VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN---------V 155
Query: 111 CYM-ISCKNSTNIDTVIDWLVK 131
Y+ S K N+D V L++
Sbjct: 156 NYVETSAKTRANVDKVFFDLMR 177
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-08
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 2 IPTVG--FNMRKVT----------KGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-V 45
I TVG F ++V + L WD GQ RFRS+ + R A+ + +
Sbjct: 55 ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLM 114
Query: 46 Y-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQM 99
+ + + N+ R+ + L + ++++GNK D P+ +++ L ++
Sbjct: 115 FDLTSQQSFLNV---RNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKY 171
Query: 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
G+ E S N++ ++ L+
Sbjct: 172 GIPYF---ET-----SAATGQNVEKAVETLLD 195
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-08
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL----WDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAAD 52
T G + VT + T+ + D G ++ +Y AI V+ V
Sbjct: 52 AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES 111
Query: 53 YDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85
+++ L + +++ NK D
Sbjct: 112 FESCKAWFELLKSARPDRERP-LRAVLVANKTD 143
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 8e-08
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 24/142 (16%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
G + L +D+ Q R + A IVY V D ++
Sbjct: 31 AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEK 90
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
R +L +P++++GNK D +S ++ C
Sbjct: 91 ASELRVQLRRARQTDD---VPIILVGNKSDLVRSREVSVDEGRACAVVFD---------C 138
Query: 111 CYM-ISCKNSTNIDTVIDWLVK 131
++ S N+ + + +V+
Sbjct: 139 KFIETSAALHHNVQALFEGVVR 160
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-07
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 26/138 (18%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS-MWERYCRAVSA--IVY-VVDAADY 53
P R++ + L +D+ Q + + + A IV+ V D +
Sbjct: 53 EPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSF 112
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDRE 108
+P + L +P + +P++++GNK D +S E+ L +
Sbjct: 113 SKVPETLLRLRA--GRPHHD-LPVILVGNKSDLARSREVSLEEGRHLAGTLS-------- 161
Query: 109 VCCYM-ISCKNSTNIDTV 125
C ++ S N +
Sbjct: 162 -CKHIETSAALHHNTREL 178
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-07
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 33/152 (21%)
Query: 2 IPTVG--FNMRKVT----------KGNVTIKL--WDLGGQPRFRSMWERYCR-AVSAI-V 45
I TVG F ++V I L WD G RFRS+ + R A+ + +
Sbjct: 41 ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLL 100
Query: 46 Y-VVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQM 99
+ + + + N+ R+ + L +++ GNK D + A+ +E+ L E+
Sbjct: 101 FDLTNEQSFLNV---RNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY 157
Query: 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
G+ E S N TNI I+ L+
Sbjct: 158 GIPYF---ET-----SAANGTNISHAIEMLLD 181
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 26/138 (18%)
Query: 2 IPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS-MWERYCRAVSA--IVY-VVDAADY 53
R++ + L +D+ Q + + + A IV+ V D +
Sbjct: 32 EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSF 91
Query: 54 DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDRE 108
+P + L +P++++GNK D +S E+ L +
Sbjct: 92 SKVPETLLRLRAGRPHHD---LPVILVGNKSDLARSREVSLEEGRHLAGTLS-------- 140
Query: 109 VCCYM-ISCKNSTNIDTV 125
C ++ S N +
Sbjct: 141 -CKHIETSAALHHNTREL 157
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-07
Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 2 IPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ + RK V L D G +F +M + Y + +VY + + +++
Sbjct: 33 DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND 92
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCYM 113
L R ++ + +P++++GNK D + + KE G C ++
Sbjct: 93 LQDLREQILRVKDTED---VPMILVGNKCDLEDERVVGKEQ-----GQNLARQWCNCAFL 144
Query: 114 -ISCKNSTNIDTVIDWLVK 131
S K+ N++ + LV+
Sbjct: 145 ESSAKSKINVNEIFYDLVR 163
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-07
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 24/142 (16%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT + RK +++ D GQ + ++ + Y R+ V+ + + +
Sbjct: 44 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 103
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
R ++ + + +P L++GNK D + +S E+ EQ
Sbjct: 104 TADFREQILRVKEDEN---VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN---------V 151
Query: 111 CYM-ISCKNSTNIDTVIDWLVK 131
Y+ S K N+D V L++
Sbjct: 152 NYVETSAKTRANVDKVFFDLMR 173
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-07
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ T G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 61 SELHDLL----------SKPSLNGIPLLVLGNKIDKPE 88
E++ + + +++ NK D E
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 274
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 7e-07
Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 20/140 (14%)
Query: 2 IPTVGFNMRK-VTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
T +K + T + + G P ++ A V+ + D +
Sbjct: 36 EKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQA 90
Query: 56 LPVSRSELHDLLSKPSLNG-IPLLVLGNKIDKPE--ALSKEDLMEQMGLKSITDREVCCY 112
+ +L L + + L+ ++I + D + C Y
Sbjct: 91 VSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR-----ARALXADMKRCSY 145
Query: 113 M-ISCKNSTNIDTVIDWLVK 131
N+D V + +
Sbjct: 146 YETXATYGLNVDRVFQEVAQ 165
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 8e-07
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 25/143 (17%)
Query: 2 IPTVG-FNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ ++ N L D GQ F +M E+Y R IVY V D A +++
Sbjct: 48 DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
+ + + + S P++++ NK+D ++++ + +
Sbjct: 108 VDRFHQLILRVKDRES---FPMILVANKVDLMHLRKVTRDQGKEMATKYN---------I 155
Query: 111 CYM-ISCK-NSTNIDTVIDWLVK 131
Y+ S K N+D LV+
Sbjct: 156 PYIETSAKDPPLNVDKTFHDLVR 178
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-06
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN----- 55
+PT G +V ++ D+GGQ R W V++I+++V ++YD
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 56 -----LPVSRSELHDLLSKPSLNGIPLLVLGNKID 85
+ S++ +++ P +++ NK D
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-06
Identities = 11/94 (11%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 42 SAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVLGNKID--KPEALSKEDLME 97
I++++D ++ L + + + + K + +++ NKID ++LS ++ +
Sbjct: 110 GVILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLL 167
Query: 98 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
+ + S ++ +
Sbjct: 168 IKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-06
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 27/126 (21%)
Query: 17 VTIKLWDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDNLPVSRSELHDLLSKPSLN 73
+ + D GG P ++ V A V+ + D + + L +
Sbjct: 67 YLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE-- 119
Query: 74 GIPLLVLGNKIDKPEALSKE-------DLMEQMGLKSITDREVCCYM-ISCKNSTNIDTV 125
+P++++G + A + L + C Y N++ V
Sbjct: 120 -VPMVLVGTQDAISAANPRVIDDSRARKLSTDLK--------RCTYYETCATYGLNVERV 170
Query: 126 IDWLVK 131
+ +
Sbjct: 171 FQDVAQ 176
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-06
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
PT G + NV K+ D+GGQ R W +V++I+++V ++++D + +
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 61 SELHDL----------LSKPSLNGIPLLVLGNKIDKPE 88
+ + L ++ + + +++ NK D E
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 282
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 4e-06
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ T G K V ++D+GGQ R W + V+AI++VV ++ Y+ +
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260
Query: 61 SELHDL----------LSKPSLNGIPLLVLGNKID 85
++ + L + L I +++ NK D
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 8e-06
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 24/143 (16%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
P + + + L D R+ ERY A +VY V +D+
Sbjct: 51 DPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDS 109
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVC 110
L L +K + IP L+LGNK+D + ++K + L + G C
Sbjct: 110 SSSYLELL-ALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG---------C 159
Query: 111 CYM-ISCK-NSTNIDTVIDWLVK 131
+ +S + ++ V V+
Sbjct: 160 LFFEVSACLDFEHVQHVFHEAVR 182
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-05
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 25/135 (18%)
Query: 10 RKVTKGNVTIKL--WDLGGQPRFRS--MWERYCRAVSA--IVY-VVDAADYDNLPVSRSE 62
R +T L D + E + SA IVY + D +++ R +
Sbjct: 43 RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQ 102
Query: 63 LHDLLSKPSLNGIPLLVLGNKIDKPE--ALSKED---LMEQMGLKSITDREVCCYM-ISC 116
L +P++++GNK D +S E+ C ++ S
Sbjct: 103 LRRTHQADH---VPIILVGNKADLARCREVSVEEGRACAVVFD---------CKFIETSA 150
Query: 117 KNSTNIDTVIDWLVK 131
N+ + + +V+
Sbjct: 151 TLQHNVAELFEGVVR 165
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 44 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 103
+++V+DA+ + E +L + + LV+ NK+D E +++E++ ++G
Sbjct: 327 VLFVLDASSPLD-----EEDRKILER--IKNKRYLVVINKVDVVEKINEEEIKNKLG--- 376
Query: 104 ITDREVCCYMISCKNSTNIDTVIDWLVK 131
TDR + IS ++ + + + +
Sbjct: 377 -TDRHMVK--ISALKGEGLEKLEESIYR 401
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-05
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 42 SAIVYVVDAADYDNLPVS--RSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99
+ I+Y+ D +++ P+ ++ +P LV+ NKID + + + L +
Sbjct: 248 NLIIYIFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPFLVVINKIDVADEENIKRLEKF- 304
Query: 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
+ ++ + IS T ID V + ++K
Sbjct: 305 ----VKEKGLNPIKISALKGTGIDLVKEEIIK 332
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM- 99
V +++VV+ + + +L+K P+++ NK+D + K DL+ +
Sbjct: 89 VELVIFVVEGTRWT------PDDEMVLNKLREGKAPVILAVNKVDNVQ--EKADLLPHLQ 140
Query: 100 GLKSITD-REVCCYMISCKNSTNIDTVIDWLVKH 132
L S + ++ IS + N+DT+ + KH
Sbjct: 141 FLASQMNFLDI--VPISAETGLNVDTIAAIVRKH 172
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-05
Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL---ME 97
I++++DA + + + P++V+ NKIDK +++ ++
Sbjct: 93 ADVILFMIDATE----GWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG--PAKNVLPLID 146
Query: 98 QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132
++ K E+ IS N+D ++ ++K+
Sbjct: 147 EIHKKHPELTEI--VPISALKGANLDELVKTILKY 179
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 6e-05
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 17/128 (13%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR-AVSAI-VY-VVDAADYDNLPVS 59
T N N+ +WD GQ R+ S+ Y R A AI V+ + ++ D
Sbjct: 79 ITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTW 138
Query: 60 RSELHDLLSKPSLNGIPLLVLGNKIDKPE-ALSKEDLMEQMGLKSITDREVCCYM-ISCK 117
++L + ++++ NKIDK + + + ++ ++ S K
Sbjct: 139 VNQLK------ISSNYIIILVANKIDKNKFQVDILE------VQKYAQDNNLLFIQTSAK 186
Query: 118 NSTNIDTV 125
TNI +
Sbjct: 187 TGTNIKNI 194
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 44 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 103
++ +DAA + ++ + PL+++ NKID E L +
Sbjct: 307 VLLTIDAATGWT-----TGDQEIY--EQVKHRPLILVMNKIDLVEKQLITSLEYPENITQ 359
Query: 104 ITDREVCCYMISCKNSTNIDTVIDWLVK 131
I + ID++ +++
Sbjct: 360 I-------VHTAAAQKQGIDSLETAILE 380
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMG 100
+ V D+A ++ +L + IP +V+ NKID K + ++ +
Sbjct: 114 ADCGILVTDSAPTP----YEDDVVNLFKE---MEIPFVVVVNKIDVLGE--KAEELKGL- 163
Query: 101 LKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132
+S + +V +S D + + +
Sbjct: 164 YESRYEAKVLL--VSALQKKGFDDIGKTISEI 193
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 41 VSAIVYVVDAADYDNLPVSRSELH--DLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQ 98
V+A+V+VVD P + + L KP + +P+L++GNK+D + E+ M+
Sbjct: 87 VNAVVWVVDLRH----PPTPEDELVARAL-KPLVGKVPILLVGNKLDAAK--YPEEAMKA 139
Query: 99 MGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132
+ + + E M+S + + + L+
Sbjct: 140 YH-ELLPEAEP--RMLSALDERQVAELKADLLAL 170
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 3e-04
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 2 IPTVGFNMRKVTK-GNVTIKL--WDLGGQPRFRSMWERYCRAVSA--IVY-VVDAADYDN 55
PT+ R + + + D GQ E + R +VY + D ++
Sbjct: 58 DPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEE 116
Query: 56 LPVSRSELHDLLSKPSLNGIPLLVLGNKID 85
+ ++ L ++ + + L+++GNK D
Sbjct: 117 VLPLKNILDEIKKPKN---VTLILVGNKAD 143
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 44 IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKS 103
I+Y++D + L +E+ +L + L + NK+D+ +
Sbjct: 316 ILYLLDLGT-ERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALIRA----IAD 368
Query: 104 ITDREVCCYMISCKNSTNIDTVIDWLVK 131
T EV IS N IDT+ +
Sbjct: 369 GTGTEVIG--ISALNGDGIDTLKQHMGD 394
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 4e-04
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 12 VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS 71
VT + I D G F +M R + ++ VV AAD +P + ++ +K +
Sbjct: 50 VTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVV-AADDGVMPQTVEAINH--AKAA 106
Query: 72 LNGIPLLVLGNKIDKPEA--------LSKEDLM-EQMGLKSITDREVCCYMISCKNSTNI 122
+P++V NK+DKPEA L + +L+ E+ G +I +S K +
Sbjct: 107 --NVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTI------FCKLSAKTKEGL 158
Query: 123 DTVID 127
D +++
Sbjct: 159 DHLLE 163
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 37.8 bits (87), Expect = 4e-04
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 1 MIPTVG-----FNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD 54
+ T G F+ K +L+D+GGQ R W V+A+++ ++YD
Sbjct: 161 RVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYD 220
Query: 55 NLPVSRSELHDL----------LSKPSLNGIPLLVLGNKID 85
+ + + L +P ++ NK D
Sbjct: 221 QTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 37.3 bits (86), Expect = 7e-04
Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 30 FRSMWERYCRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKID-KP 87
F + ++ + +V +VD D++ S LH + +L++GNK D P
Sbjct: 59 FLRILNGIGKSDALVVKIVDIFDFNG---SWLPGLHRFV-----GNNKVLLVGNKADLIP 110
Query: 88 EALSKEDLME--QMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136
+++ + + + K + + ++IS I + D + + K
Sbjct: 111 KSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGK 161
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 137 | |||
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.96 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.96 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.96 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.96 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.95 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.95 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.95 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.95 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.95 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.95 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.95 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.95 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.95 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.95 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.94 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.94 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.94 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.92 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.91 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.91 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.91 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.9 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.9 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.9 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.9 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.9 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.9 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.9 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.9 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.9 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.9 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.9 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.89 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.89 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.89 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.89 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.89 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.89 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.89 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.89 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.89 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.89 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.89 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.89 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.89 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.89 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.89 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.89 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.89 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.89 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.89 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.89 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.89 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.89 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.89 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.89 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.89 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.88 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.88 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.88 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.88 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.88 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.88 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.88 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.88 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.88 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.88 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.88 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.88 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.88 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.88 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.88 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.88 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.88 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.88 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.88 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.88 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.88 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.88 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.88 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.88 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.88 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.87 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.87 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.87 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.87 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.87 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.87 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.87 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.87 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.87 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.87 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.87 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.86 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.86 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.86 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.86 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.86 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.86 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.86 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.86 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.86 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.86 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.86 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.85 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.84 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.83 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.73 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.83 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.81 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.81 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.81 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.81 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.81 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.8 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.8 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.79 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.79 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.79 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.78 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.78 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.77 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.77 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.74 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.74 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.74 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.74 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.74 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.73 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.73 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.73 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.73 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.73 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.73 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.73 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.73 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.72 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.7 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.7 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.7 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.7 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.7 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.69 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.69 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.69 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.69 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.68 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.68 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.68 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.68 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.67 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.67 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.66 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.66 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.66 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.65 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.65 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.65 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.65 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.62 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.6 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.6 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.6 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.6 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.58 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.58 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.58 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.57 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.56 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.56 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.55 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.53 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.52 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.51 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.5 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.5 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.5 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.48 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.47 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.45 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.43 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.41 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.39 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.37 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.36 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.36 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.35 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.31 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.29 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.29 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.26 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.24 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.18 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.18 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.17 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.17 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.15 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.14 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.13 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.12 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.07 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.02 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.01 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 98.93 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 98.93 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 98.88 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.85 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 98.73 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.64 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.61 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.49 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.48 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.43 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.37 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.25 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.12 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 97.89 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.42 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.5 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.33 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 95.9 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.83 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 94.77 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 94.52 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 94.11 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 94.07 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 93.58 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 92.64 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 92.07 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 91.68 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 91.34 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 91.04 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 90.78 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 89.36 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 89.33 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 89.28 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 89.07 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 87.7 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 87.62 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 87.46 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 85.05 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 84.41 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 83.77 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 82.67 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 81.63 |
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=155.99 Aligned_cols=135 Identities=29% Similarity=0.589 Sum_probs=114.8
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+|++...+..++..+.+|||||++.++..+..+++.+|++++|+|+++.++++....|+..+.......++|+++++
T Consensus 45 ~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 124 (181)
T 1fzq_A 45 TPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124 (181)
T ss_dssp EEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEE
T ss_pred cCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 58899888888888999999999999999999999999999999999999999999988888888665444679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++.+.++........+.++++||++|+|++++|+++.+.+.++
T Consensus 125 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred ECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999987777667777665443344567899999999999999999999988654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=151.39 Aligned_cols=136 Identities=29% Similarity=0.640 Sum_probs=115.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+++....+..++..+.+|||||+++++..+..+++.+|++++|+|++++++++....|+..+.......++|++++
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (164)
T 1r8s_A 28 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 107 (164)
T ss_dssp CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEE
Confidence 36899988888888999999999999999999999999999999999999999999998889888876544468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++...++........++++++||++|+|++++|++|.+.+.++
T Consensus 108 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 108 ANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred EECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 99999987666666777666444444567899999999999999999999988754
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=149.06 Aligned_cols=136 Identities=35% Similarity=0.680 Sum_probs=118.1
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.....+..++..+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+.......++|++++
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 114 (171)
T 1upt_A 35 TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVF 114 (171)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred cCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEE
Confidence 36899988888888899999999999999999999999999999999999999999998888888876544468999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++...++.......++.++++||++|+|++++|+++.+.+.++
T Consensus 115 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 115 ANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp EECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 99999987766667777665444445567899999999999999999999998765
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=152.12 Aligned_cols=136 Identities=69% Similarity=1.240 Sum_probs=116.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.++..+..++..+.+|||||++++...+..+++.+|++++|+|+++.++++.+..|+..+.......++|+++|
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 130 (188)
T 1zd9_A 51 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 130 (188)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred cCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 46899999888999999999999999999999999999999999999999999999999888888876544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.......++...++........+.++++||++|+|++++|++|.+.+.++
T Consensus 131 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999987666666666665443444567899999999999999999999988754
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=152.34 Aligned_cols=135 Identities=30% Similarity=0.635 Sum_probs=112.5
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+++....++.++..+.+|||||+++++..+..+++.+|++++|+|++++.+++....|+..+.......++|+++++
T Consensus 58 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~ 137 (192)
T 2b6h_A 58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFA 137 (192)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEE
Confidence 58899888888899999999999999999999999999999999999999999999998998888765444689999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++...++........+.++++||++|+|++++|++|.+.+.++
T Consensus 138 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 138 NKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192 (192)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTTC
T ss_pred ECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhcC
Confidence 9999987766677777776544444567899999999999999999999988653
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=150.99 Aligned_cols=136 Identities=32% Similarity=0.596 Sum_probs=117.5
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++++...+..++..+++|||||++++...+..+++.+|++++|+|++++.+++....|+..+.......++|++++
T Consensus 46 ~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 125 (186)
T 1ksh_A 46 ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF 125 (186)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEE
Confidence 46899988888888999999999999999999999999999999999999999999998888888876544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++.+.++........++++++||++|+|++++|+++.+.+.++
T Consensus 126 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 126 ANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999988777777777665433334567899999999999999999999988653
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=150.50 Aligned_cols=134 Identities=27% Similarity=0.516 Sum_probs=111.8
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+|++...+..++..+.+|||||+++++..+..+++.+|++++|+|+++.++++....|+..+.......++|+++++
T Consensus 45 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 124 (187)
T 1zj6_A 45 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 124 (187)
T ss_dssp ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred cCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEE
Confidence 58999888888889999999999999999999999999999999999999999999999999888775434679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
||+|+.+.....++.+.++.......++.++++||++|+|++++|++|++.+.+
T Consensus 125 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 125 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp ECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred ECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 999998766666666666543333456789999999999999999999998754
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=150.63 Aligned_cols=135 Identities=36% Similarity=0.646 Sum_probs=117.6
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||++++...+..++..+.+|||||+++++..+..+++.+|++++|+|++++++++....|+..+.......++|+++++
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 130 (189)
T 2x77_A 51 VPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA 130 (189)
T ss_dssp CSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEE
T ss_pred CCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEE
Confidence 58999888888889999999999999999988888999999999999999999999998888888776555789999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++...++........++++++||++|+|++++++++.+.+.++
T Consensus 131 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 131 NKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 9999987766667777766444445567899999999999999999999988654
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=159.88 Aligned_cols=125 Identities=21% Similarity=0.360 Sum_probs=97.1
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++.. +. ...+++++|||+|+++++++++.+++.++++++|||+++..+++.+..|+..+.... ..++|
T Consensus 42 ~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~p 120 (216)
T 4dkx_A 42 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVI 120 (216)
T ss_dssp --------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSE
T ss_pred cCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCe
Confidence 46899865543 33 445899999999999999999999999999999999999999999999998886543 26799
Q ss_pred EEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++||+||+|+.+.+.+ .++...++ +.|++|||++|+||+++|+.|++.+.
T Consensus 121 iilVgNK~Dl~~~r~V~~~e~~~~a~~~~--------~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 121 IMLVGNKTDLADKRQVSIEEGERKAKELN--------VMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred EEEEeeccchHhcCcccHHHHhhHHHHhC--------CeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 9999999999765432 23444444 35999999999999999999998875
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=154.26 Aligned_cols=135 Identities=28% Similarity=0.605 Sum_probs=115.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC-------C
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL-------N 73 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~ 73 (137)
+.||+|++...++..++.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+...... .
T Consensus 47 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (199)
T 4bas_A 47 ITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGG 126 (199)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSC
T ss_pred cccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccC
Confidence 479999999999999999999999999999999999999999999999999999999998898888764211 3
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHHhCCCCC-CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSI-TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++|+||+|+.......++...++.... ....+.++++||++|+|++++|++|.+.+.+
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 7999999999999887776777666653222 3356789999999999999999999998864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=148.62 Aligned_cols=136 Identities=33% Similarity=0.629 Sum_probs=114.5
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+....+..++..+.+|||||++++...+..+++.+|++++|+|+++..+++....|+..+.......++|++++
T Consensus 46 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 125 (183)
T 1moz_A 46 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF 125 (183)
T ss_dssp ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEE
T ss_pred cCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEE
Confidence 35899988888888899999999999999999999999999999999999999999999999888877554578999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....++.+.++........+.++++||++|+|+++++++|.+.+.++
T Consensus 126 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 126 ANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 99999987766777777776554445677899999999999999999999988653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=148.60 Aligned_cols=131 Identities=27% Similarity=0.529 Sum_probs=113.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||+|++...+..++..+.+|||||++++...+..+++.+|++++|+|+++..+++....|+..+.......++|+++++
T Consensus 50 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 129 (181)
T 2h17_A 50 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 129 (181)
T ss_dssp ECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred CCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEE
Confidence 58999888888889999999999999999999999999999999999999999999998888888765434679999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
||+|+.+.....++.+.++........+.++++||++|+|++++|++|.+.
T Consensus 130 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 130 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred ECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 999998766666676666544334456789999999999999999999865
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=148.90 Aligned_cols=132 Identities=33% Similarity=0.575 Sum_probs=113.1
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+...+..++..+.+|||||++.++..+..+++.+|++++|+|++++.+++....|+..+.......++|++++
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 130 (190)
T 1m2o_B 51 LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL 130 (190)
T ss_dssp CCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred cccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEE
Confidence 46899988888888899999999999999999999999999999999999999999999999988876544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCC-------CCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKS-------ITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+||+|+.+.....++.+.++... .....+.++++||++|+|++++|++|.+.
T Consensus 131 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 131 GNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred EECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 99999987666667777665432 12346789999999999999999999875
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=150.73 Aligned_cols=133 Identities=33% Similarity=0.615 Sum_probs=107.8
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+...+..++..+.+|||||++.++..+..+++.+|++++|+|++++++++....|+..+.......++|++++
T Consensus 53 ~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 132 (198)
T 1f6b_A 53 HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 132 (198)
T ss_dssp --CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEE
T ss_pred cCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 46899988888888899999999999999999999999999999999999999999999999988876544467999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCC---------C---CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKS---------I---TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.......++.+.++... . ....+.+++|||++|+|++++|++|.+.+
T Consensus 133 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 133 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 99999987666666666665321 0 12457899999999999999999998765
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=147.03 Aligned_cols=135 Identities=27% Similarity=0.619 Sum_probs=113.6
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCC--CCCcEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSL--NGIPLL 78 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~i 78 (137)
+.||+++....+..++..+.+|||||+++++..+..+++.+|++++|+|+++..+++....|+..+...... .++|++
T Consensus 51 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii 130 (190)
T 2h57_A 51 ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130 (190)
T ss_dssp CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE
T ss_pred cCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE
Confidence 468899888888888999999999999999999999999999999999999988899888888888765443 679999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+||+|+.......++.+.+........++.++++||++|+|++++|++|.+.+.+
T Consensus 131 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 131 FFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 999999998766666666666533333346789999999999999999999988764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=156.12 Aligned_cols=135 Identities=30% Similarity=0.646 Sum_probs=116.0
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||++..+..++.+++.+++|||||++.+..++..+++.+|++++|+|+++..+++.+..++..+.......++|+++|+
T Consensus 194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~ 273 (329)
T 3o47_A 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 273 (329)
T ss_dssp EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEE
Confidence 47889888899999999999999999999999999999999999999999999999999888888776555689999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++...++........+.++++||++|+|++++|++|.+.+.++
T Consensus 274 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 274 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp ECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred ECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 9999988877788888887766666788999999999999999999999988764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-25 Score=140.44 Aligned_cols=127 Identities=19% Similarity=0.239 Sum_probs=100.8
Q ss_pred CCcccceeeE-----EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC------CCCChHHHHHHHHHHhcCC
Q 032598 2 IPTVGFNMRK-----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA------DYDNLPVSRSELHDLLSKP 70 (137)
Q Consensus 2 ~pt~~~~~~~-----~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~ 70 (137)
.||++.++.. ++...+.+++|||||++++...+..+++.+|++++|+|++ +.+++..+..|+..+. .
T Consensus 54 ~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~ 131 (198)
T 3t1o_A 54 ERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--L 131 (198)
T ss_dssp CEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--C
T ss_pred ccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--c
Confidence 3566655442 3345689999999999999999999999999999999999 4455666667777663 2
Q ss_pred CCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhhhh
Q 032598 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...++|+++|+||+|+.+.....+........ ++ .++++||++|+|++++|++|.+.+.+
T Consensus 132 ~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 132 TLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE-----GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT-----CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEEchhcccccCHHHHHHHHHhc-----CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 34689999999999998776666666665532 33 69999999999999999999998864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=134.01 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=83.6
Q ss_pred CcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 3 PTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 3 pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
|+.+..+.. ++...+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.......++|+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 111 (166)
T 3q72_A 32 EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 111 (166)
T ss_dssp ----CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEE
T ss_pred CccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 455544332 33446789999999999999999999999999999999999999999999998887765557899999
Q ss_pred EeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 80 LGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 80 v~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
++||+|+.+.... . ...... +++++++||++|+|++++|++|.+.+.++|
T Consensus 112 v~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~r 166 (166)
T 3q72_A 112 VGNKSDLVRSREVSVDEGRACAVVF--------DCKFIETSAALHHNVQALFEGVVRQIRLRR 166 (166)
T ss_dssp EEECTTCCSSCCSCHHHHHHHHHHT--------TCEEEECBGGGTBSHHHHHHHHHHHHHHHC
T ss_pred EEeccccccccccCHHHHHHHHHHh--------CCcEEEeccCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999765432 2 222222 246999999999999999999999988654
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=150.61 Aligned_cols=135 Identities=20% Similarity=0.319 Sum_probs=108.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC----------CChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY----------DNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++.+++|||+|++++++.|.+++++++++|+|+|+++. .++++...|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 5889988888999999999999999999999999999999999999999994 458888889988887655
Q ss_pred CCCCcEEEEeeCCCCCCC-----------------CCHHHHHHHhC-----CCCC-CCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEA-----------------LSKEDLMEQMG-----LKSI-TDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
..++|+++++||+|+... ....+...... .... ..+.+.+++|||++|+||+++|.+
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 578999999999998421 22222222111 1111 135678999999999999999999
Q ss_pred HHHhhhhc
Q 032598 129 LVKHSKSK 136 (137)
Q Consensus 129 i~~~~~~~ 136 (137)
+.+.+.++
T Consensus 338 v~~~i~~~ 345 (353)
T 1cip_A 338 VTDVIIKN 345 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=135.45 Aligned_cols=128 Identities=21% Similarity=0.344 Sum_probs=96.5
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 59 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~pi 137 (201)
T 2hup_A 59 GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQ 137 (201)
T ss_dssp ------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 47777443 4455544 799999999999999999999999999999999999888988888888876543 367999
Q ss_pred EEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEAL--SKEDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+.+ ...+....... .++ .++++||++|+|++++|++|.+.+.+
T Consensus 138 ilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 138 LLIGNKSDLSELREVSLAEAQSLAEH-----YDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHH-----TTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECCccccccccCHHHHHHHHHH-----cCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999997533 22222222211 123 68999999999999999999998864
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-24 Score=146.00 Aligned_cols=135 Identities=18% Similarity=0.288 Sum_probs=108.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++++++|||+|++++++.|.+|+++++++++|+|++ +..++.+...|+..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 68999999999999999999999999999999999999999999999665 45667778888888887666
Q ss_pred CCCCcEEEEeeCCCCCCC------------------CCHHHH----HHHhC-CCCCCCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEA------------------LSKEDL----MEQMG-LKSITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~------------------~~~~~~----~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
..++|+++++||+|+.+. ....+. ...+. ......+.+.+++|||++++||+++|..
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 678999999999997532 122221 11121 1122345678999999999999999999
Q ss_pred HHHhhhhc
Q 032598 129 LVKHSKSK 136 (137)
Q Consensus 129 i~~~~~~~ 136 (137)
+.+.+.++
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=133.36 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=100.5
Q ss_pred CCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+.. ..+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.......++|++
T Consensus 48 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 127 (183)
T 3kkq_A 48 DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127 (183)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE
T ss_pred CCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 466664443 2333 3466788999999999999999999999999999999998999888898888765445789999
Q ss_pred EEeeCCCCCCCCC--H---HHHHHHhCCCCCCCCceeEEEeecc-cCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALS--K---EDLMEQMGLKSITDREVCCYMISCK-NSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||+|+.+... . ..+...++ +.++++||+ +|+|++++|++|.+.+.++
T Consensus 128 lv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 128 LVANKVDLMHLRKVTRDQGKEMATKYN--------IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp EEEECTTCSTTCCSCHHHHHHHHHHHT--------CCEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred EEEECCCchhccCcCHHHHHHHHHHhC--------CeEEEeccCCCCCCHHHHHHHHHHHHhhC
Confidence 9999999976433 2 23344443 359999999 9999999999999988753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=130.69 Aligned_cols=125 Identities=25% Similarity=0.458 Sum_probs=100.3
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+..... .++|+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ 124 (196)
T 3tkl_A 46 ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNK 124 (196)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE
T ss_pred CCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCE
Confidence 46666443 4455544 7899999999999999999999999999999999998888888888887765432 57999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... ..+...++ ++++++||++|+|++++|++|.+.+.+
T Consensus 125 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 125 LLVGNKCDLTTKKVVDYTTAKEFADSLG--------IPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHHTT--------CCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHHHcC--------CcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999765432 22333333 359999999999999999999998865
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=132.38 Aligned_cols=126 Identities=27% Similarity=0.486 Sum_probs=92.0
Q ss_pred CCcccceeeE--EEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++.. +..+ .+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .++|+
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi 119 (180)
T 2g6b_A 41 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVAL 119 (180)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE
T ss_pred CCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcE
Confidence 5777766543 3333 46899999999999999999999999999999999998888888888887765432 67999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+... .. .+...++ ++++++||++|+|++++|+++.+.+.++
T Consensus 120 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 120 MLLGNKVDSAHERVVKREDGEKLAKEYG--------LPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp EEEEECCSTTSCCCSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEEECcccCcccccCHHHHHHHHHHcC--------CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999976432 22 2333333 3599999999999999999999988653
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=130.96 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=97.6
Q ss_pred CCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||.+..+. .+.. +.+.+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+.......++|++
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 113 (168)
T 1u8z_A 34 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113 (168)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE
T ss_pred CCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 466665543 2333 3478999999999999999999999999999999999998898888888888765444679999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+... ..+....... .+++++++||++|+|++++|+++.+.+.+
T Consensus 114 lv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 114 LVGNKSDLEDKRQVSVEEAKNRADQ-----WNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEECccccccCccCHHHHHHHHHH-----cCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999965432 2222222211 12469999999999999999999998865
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-24 Score=148.48 Aligned_cols=134 Identities=21% Similarity=0.312 Sum_probs=100.1
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++.+++|||+|+++++..|.+++++++++|+|+|+++ ..++.....|+..+.....
T Consensus 186 ~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 186 RPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 578898888888899999999999999999999999999999999999999 5578888889998887655
Q ss_pred CCCCcEEEEeeCCCCCCC------------------CCHHHHHHHh-----CCCCCC-CCceeEEEeecccCCChHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEA------------------LSKEDLMEQM-----GLKSIT-DREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
..++|+++++||+|+.+. ....+....+ ...... .+.+.+++|||++++||+++|.
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 578999999999998521 2233322211 111111 3467899999999999999999
Q ss_pred HHHHhhhh
Q 032598 128 WLVKHSKS 135 (137)
Q Consensus 128 ~i~~~~~~ 135 (137)
++.+.+.+
T Consensus 346 ~v~~~i~~ 353 (362)
T 1zcb_A 346 DVKDTILH 353 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=131.03 Aligned_cols=123 Identities=15% Similarity=0.248 Sum_probs=95.1
Q ss_pred CCcccceeeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 2 IPTVGFNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.||.+.....+..++ +.+.+|||+|+++++ +++.+|++++|+|+++..+++.+..|+..+.......++|+++
T Consensus 50 ~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 124 (184)
T 3ihw_A 50 SPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVL 124 (184)
T ss_dssp CTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEE
T ss_pred CCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 466553334455444 778889999999887 7888999999999999999999889999987765446799999
Q ss_pred EeeCCCCCC--CC--CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 80 LGNKIDKPE--AL--SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 80 v~nK~D~~~--~~--~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++||+|+.. .. ... ++...++ .+.++++||++|+|++++|+++++.+.++
T Consensus 125 v~nK~Dl~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 125 VGTQDAISAANPRVIDDSRARKLSTDLK-------RCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp EEECTTCBTTBCCCSCHHHHHHHHHHTT-------TCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEECcccccccccccCHHHHHHHHHHcC-------CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 999999842 22 222 2333332 24699999999999999999999988754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=131.41 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=99.3
Q ss_pred CCcccceeeE-E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~~-~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+.. + +.+.+.+.+|||||++++...+..+++.+|++++|+|++++.+++.+..|+..+.......++|++
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1c1y_A 33 DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112 (167)
T ss_dssp CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE
T ss_pred CCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE
Confidence 4677755442 2 234678999999999999999999999999999999999988888888888877664444689999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+.+... ..+....... ...++++++||++|+|++++|++|.+.+.
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 113 LVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred EEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 9999999975433 2222221111 01346999999999999999999998875
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=133.07 Aligned_cols=129 Identities=22% Similarity=0.371 Sum_probs=100.7
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.......++|+
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ 124 (195)
T 1x3s_A 45 AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN 124 (195)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEE
T ss_pred CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence 57777444 33433 458899999999999999999999999999999999998888888899888877654568999
Q ss_pred EEEeeCCCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.... ...+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 125 ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 125 MLVGNKIDKENREVDRNEGLKFARK-----HSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEEEECTTSSSCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEECCcCcccccCHHHHHHHHHH-----cCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9999999995432 22222222111 13469999999999999999999998764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-23 Score=130.29 Aligned_cols=126 Identities=26% Similarity=0.435 Sum_probs=100.8
Q ss_pred CCcccceee---EEEeC-----------CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHh
Q 032598 2 IPTVGFNMR---KVTKG-----------NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL 67 (137)
Q Consensus 2 ~pt~~~~~~---~~~~~-----------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 67 (137)
.||++.++. .+... .+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 120 (195)
T 3bc1_A 41 ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQ 120 (195)
T ss_dssp CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 577775554 33333 4799999999999999999999999999999999999888888888888887
Q ss_pred cCCCCCCCcEEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 68 SKPSLNGIPLLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 68 ~~~~~~~~p~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
......++|+++++||+|+.+... .. ++...++ +.++++||++|+|++++|++|.+.+.+
T Consensus 121 ~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG--------IPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp HHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC--------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 654446799999999999975332 22 2333333 359999999999999999999988764
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=132.58 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=100.0
Q ss_pred CCCcccceee-EEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+. .+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|+
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 114 (181)
T 3t5g_A 35 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI 114 (181)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCE
T ss_pred CCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3577775543 334444 7889999999999998899999999999999999999999999999888877655568999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.... . .+...+ ++.++++||++|+|++++|+++.+.+.++
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 115 MLVGNKKDLHMERVISYEEGKALAESW--------NAAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHHT--------TCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred EEEEECccchhcceecHHHHHHHHHHh--------CCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999999654432 2 233333 33699999999999999999999988754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=135.79 Aligned_cols=127 Identities=19% Similarity=0.242 Sum_probs=98.3
Q ss_pred CCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+.. ++.+.+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 54 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 133 (201)
T 3oes_A 54 DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133 (201)
T ss_dssp CCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 4677744432 3456799999999999999999999999999999999999999999999999998876555689999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+|+||+|+.+.... ..+...++ +.++++||++|.|++++|++|.+.+.+.
T Consensus 134 lv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 134 LVGNKADLSPEREVQAVEGKKLAESWG--------ATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEEECccCccccccCHHHHHHHHHHhC--------CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999998754432 22333333 3699999999999999999999988653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-23 Score=128.55 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=88.7
Q ss_pred CCEEEEEEecCCccccHH-hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-- 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 91 (137)
..+.+.+|||||++.+.. .+..+++.+|++++|+|++++++++.+..|+..+.......++|+++++||+|+.+...
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 128 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 128 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC
Confidence 347889999999998876 77778999999999999999999999999998887754445899999999999974433
Q ss_pred HHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 92 KED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 92 ~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
..+ +...+ ++.++++||++|+|++++|+++.+.+..+|
T Consensus 129 ~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~r 169 (169)
T 3q85_A 129 LEEGRHLAGTL--------SCKHIETSAALHHNTRELFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHT--------TCEEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc--------CCcEEEecCccCCCHHHHHHHHHHHHHhcC
Confidence 222 22233 346999999999999999999999988764
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-24 Score=148.25 Aligned_cols=134 Identities=18% Similarity=0.212 Sum_probs=105.6
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCC----------CCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------YDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++.+++|||+|++++++.|..|+++++++|+|+|+++ ..+++....|+..+.....
T Consensus 202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 468888888888889999999999999999999999999999999999999 7889999999999987655
Q ss_pred CCCCcEEEEeeCCCCCCCC------C-------------------------HHHHHHHh-----C----CCCCCCCceeE
Q 032598 72 LNGIPLLVLGNKIDKPEAL------S-------------------------KEDLMEQM-----G----LKSITDREVCC 111 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~------~-------------------------~~~~~~~~-----~----~~~~~~~~~~~ 111 (137)
..++|+++++||+|+.... + ..+....+ . ......+.+.+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 6789999999999974210 0 00111111 0 00001135678
Q ss_pred EEeecccCCChHHHHHHHHHhhhh
Q 032598 112 YMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 112 ~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|||++++||+++|.++.+.+.+
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHHHH
Confidence 999999999999999999888764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=131.79 Aligned_cols=125 Identities=25% Similarity=0.380 Sum_probs=98.3
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++ ..+..++ +.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~pi 134 (201)
T 2ew1_A 56 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVIT 134 (201)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 47777444 3444444 789999999999999999999999999999999999888888888888776542 257999
Q ss_pred EEEeeCCCCCCCCC--HHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+... ..+ +.... ++.++++||++|+|++++|+++.+.+.+
T Consensus 135 ilv~NK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 135 VLVGNKIDLAERREVSQQRAEEFSEAQ--------DMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHHHHH--------TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccccCHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999965432 222 22222 2359999999999999999999988754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=132.91 Aligned_cols=125 Identities=25% Similarity=0.441 Sum_probs=85.3
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 116 (183)
T 2fu5_C 38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEK 116 (183)
T ss_dssp HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 36666443 3455444 899999999999999999999999999999999999888888888888876532 257999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... .. .+...++ ++++++||++|+|++++|.+|.+.+.+
T Consensus 117 ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 117 MILGNKCDVNDKRQVSKERGEKLALDYG--------IKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp EEEEEC--CCSCCCSCHHHHHHHHHHHT--------CEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred EEEEECccCCccCcCCHHHHHHHHHHcC--------CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999976433 22 2233332 469999999999999999999988764
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-24 Score=135.39 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=98.4
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|+|++++.+++....|+..+.... ..++|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 111 (170)
T 1ek0_A 33 EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIII 111 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 57777443 33433 35789999999999999999999999999999999999988988888888876543 257999
Q ss_pred EEEeeCCCCCCC---CC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEA---LS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~---~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+... .. .. ++.... +++++++||++|.|++++|++|.+.+.+
T Consensus 112 ilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 112 ALVGNKIDXLQEGGERKVAREEGEKLAEEK--------GLLFFETSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp EEEEECGGGGGSSCCCCSCHHHHHHHHHHH--------TCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred EEEEECCCccccccccCCCHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999998654 21 11 222222 2469999999999999999999988754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=132.53 Aligned_cols=129 Identities=21% Similarity=0.317 Sum_probs=100.9
Q ss_pred CCccccee-eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~-~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+ ..+..+ .+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 44 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 123 (206)
T 2bov_A 44 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123 (206)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 46777544 334433 368999999999999999999999999999999999998999988898888775544689999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+... ..+....... .+++++++||++|+|++++|++|.+.+.+
T Consensus 124 lv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 124 LVGNKSDLEDKRQVSVEEAKNRAEQ-----WNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHH-----HTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeccCccccccccHHHHHHHHHH-----hCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999975432 2222222211 12369999999999999999999988754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=129.43 Aligned_cols=126 Identities=29% Similarity=0.480 Sum_probs=96.8
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccH-HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~-~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++.++ ..+..++ +.+.+|||||++++. ..+..+++.+|++++|+|+++..+++.+..|+..+.......++|
T Consensus 50 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 129 (189)
T 1z06_A 50 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 129 (189)
T ss_dssp CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC
T ss_pred CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 46777444 3454444 789999999999998 889999999999999999999888888888988887765456899
Q ss_pred EEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccC---CChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNS---TNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+... .. .+....+ +.++++||++| +|++++|++|++.+.+
T Consensus 130 iilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 130 RILVGNKCDLRSAIQVPTDLAQKFADTHS--------MPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHTT--------CCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred EEEEEECccccccceeCHHHHHHHHHHcC--------CEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 999999999965432 22 2222222 35999999999 9999999999887754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-23 Score=131.82 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=100.7
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+... .+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 48 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 127 (187)
T 2a9k_A 48 EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127 (187)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 466665443 23333 468999999999999999999999999999999999998888888888888765444589999
Q ss_pred EEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+||+|+.+... ..+....... .+++++++||++|+|++++|++|.+.+.+
T Consensus 128 lv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 128 LVGNKSDLEDKRQVSVEEAKNRAEQ-----WNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECccccccCccCHHHHHHHHHH-----cCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999865432 2332222211 13469999999999999999999998865
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.9e-23 Score=131.16 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=92.0
Q ss_pred CCEEEEEEecCCccccHH-hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-- 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 91 (137)
..+.+.+|||+|++++.. ++..+++.+|++++|+|+++..+++.+..|+..+.......++|+++++||+|+.+...
T Consensus 70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~ 149 (195)
T 3cbq_A 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 149 (195)
T ss_dssp EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC
T ss_pred EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC
Confidence 357889999999988765 77888999999999999999999999999988886643335799999999999975433
Q ss_pred HHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 92 KED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 92 ~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
..+ +...+ ++.++++||++|.|++++|+++++.+.++
T Consensus 150 ~~~~~~~a~~~--------~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 150 LEEGRHLAGTL--------SCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHT--------TCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--------CCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 222 22222 24699999999999999999999988653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=137.10 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=99.6
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHH-HHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV-SRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. ++...+.+.+|||+|++++..++..+++.+|++++|+|+++..+++. ...|+..+... ..++|
T Consensus 56 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~p 133 (214)
T 3q3j_B 56 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTR 133 (214)
T ss_dssp CCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSE
T ss_pred cCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 46888866642 34556899999999999999999999999999999999999999988 67888877654 25799
Q ss_pred EEEEeeCCCCCCC--------------CCH---HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSK---EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+. ... ..+...++. ..++++||++|+| ++++|+++++.+.+
T Consensus 134 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 134 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA-------EIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC-------SEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC-------CEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 9999999999652 222 223333332 1599999999998 99999999998764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-23 Score=133.61 Aligned_cols=112 Identities=21% Similarity=0.428 Sum_probs=92.5
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--KE 93 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~ 93 (137)
.+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.......++|+++|+||+|+..... ..
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 6789999999999999999999999999999999999888888888887776554346899999999999975433 22
Q ss_pred ---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 94 ---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++...++ +.++++||++|+|++++|++|.+.+.+
T Consensus 163 ~~~~~~~~~~--------~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 163 QARELADKYG--------IPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHHHHHHTT--------CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--------CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2233332 359999999999999999999988754
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=128.83 Aligned_cols=129 Identities=24% Similarity=0.320 Sum_probs=100.7
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++.. +. .....+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 130 (192)
T 2fg5_A 52 ISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIV 130 (192)
T ss_dssp CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCE
T ss_pred cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCc
Confidence 35777755432 33 356899999999999999999999999999999999999999998888888876542 35799
Q ss_pred EEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.. ...+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 131 iiiv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 131 MAIAGNKCDLSDIREVPLKDAKEYAES-----IGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHT-----TTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 99999999996532 23333332221 23569999999999999999999988764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=131.45 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=100.4
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 39 ~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 118 (181)
T 2fn4_A 39 DPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118 (181)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE
T ss_pred CCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 567775544 34444 378999999999999999999999999999999999988888888888888654444679999
Q ss_pred EEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+.... .+....+.. ..++.++++||++|+|++++|++|.+.+.+
T Consensus 119 lv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 119 LVGNKADLESQRQVPRSEASAFGA----SHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECcccccccccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999754332 111122210 113469999999999999999999998864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=129.16 Aligned_cols=130 Identities=22% Similarity=0.306 Sum_probs=98.9
Q ss_pred CCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+... ...++|+
T Consensus 56 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~pi 134 (192)
T 2il1_A 56 KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAEL 134 (192)
T ss_dssp -CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcE
Confidence 46776443 345444 478999999999999999999999999999999999988888888887766543 2257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+.+... ..+....... ...+.++++||++|+|++++|++|.+.+.++
T Consensus 135 ilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 135 LLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999975433 2222222111 1245799999999999999999999988653
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=128.41 Aligned_cols=128 Identities=20% Similarity=0.306 Sum_probs=99.2
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+.. ....+.+|||||++++...+..+++.+|++++|+|+++..+++....|+..+.... ..++|+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ 120 (181)
T 2efe_B 42 ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVM 120 (181)
T ss_dssp CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 467774443 3433 35789999999999999999999999999999999999888888888888877643 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+....... .+++++++||++|+|++++|++|.+.+.+
T Consensus 121 i~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 121 ALAGNKSDLLDARKVTAEDAQTYAQE-----NGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHH-----TTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred EEEEECCcccccccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999965433 2222222211 13469999999999999999999988764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-23 Score=132.17 Aligned_cols=124 Identities=23% Similarity=0.414 Sum_probs=99.2
Q ss_pred Ccccceee--EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~~--~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
||++..+. .+ ..+++.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|++
T Consensus 54 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii 132 (191)
T 3dz8_A 54 STVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVI 132 (191)
T ss_dssp EEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEE
T ss_pred CCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEE
Confidence 55664443 23 3467999999999999999999999999999999999999989988888888886632 3579999
Q ss_pred EEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+||+|+.+.... . .+...++ +.++++||++|+|++++|++|.+.+.+
T Consensus 133 lv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 133 LVGNKCDMEEERVVPTEKGQLLAEQLG--------FDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCccccccCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999998654322 2 2333333 359999999999999999999998865
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=128.66 Aligned_cols=126 Identities=20% Similarity=0.323 Sum_probs=96.7
Q ss_pred CCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||.+..+. .+.. ..+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 34 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 113 (189)
T 4dsu_A 34 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113 (189)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE
T ss_pred CCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 355553332 2333 3466889999999999999999999999999999999998899988898888775555789999
Q ss_pred EEeeCCCCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+.... ..+...++ ++++++||++|+|++++|++|.+.+.+
T Consensus 114 ~v~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 114 LVGNKCDLPSRTVDTKQAQDLARSYG--------IPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp EEEECTTSSSCSSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECccCcccccCHHHHHHHHHHcC--------CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999754322 23333343 359999999999999999999998764
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=126.43 Aligned_cols=128 Identities=20% Similarity=0.295 Sum_probs=98.7
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+.. .++.+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+.... ..++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i 114 (170)
T 1r2q_A 36 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVI 114 (170)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 467774443 3333 36789999999999999999999999999999999999888888888888776542 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+....... ..+.++++||++|+|++++|++|.+.+.+
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 115 ALSGNKADLANKRAVDFQEAQSYADD-----NSLLFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred EEEEECccCccccccCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999999865432 2222222111 13469999999999999999999987754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=126.33 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=98.3
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 123 (179)
T 1z0f_A 45 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVI 123 (179)
T ss_dssp TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 46676443 33443 34789999999999999999999999999999999999888888888887776542 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+....... .++.++++||++|+|++++|+++.+.+.+
T Consensus 124 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 124 ILIGNKADLEAQRDVTYEEAKQFAEE-----NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 99999999965432 2222222211 13469999999999999999999998764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-23 Score=128.95 Aligned_cols=127 Identities=20% Similarity=0.348 Sum_probs=97.7
Q ss_pred CCcccc--eeeEEEeCC---EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCC
Q 032598 2 IPTVGF--NMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGI 75 (137)
Q Consensus 2 ~pt~~~--~~~~~~~~~---~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~ 75 (137)
.||++. ....+...+ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... ..+.
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 115 (178)
T 2hxs_A 36 KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115 (178)
T ss_dssp HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCC
T ss_pred CCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 477773 345566544 8999999999999999999999999999999999998888888888877754211 1134
Q ss_pred c-EEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 76 P-LLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 76 p-~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
| +++++||+|+.+... .. .+...++ ++++++||++|+|++++|++|.+.+.+.
T Consensus 116 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENG--------FSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp CEEEEEEECGGGGGGCSSCHHHHHHHHHHHT--------CEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred CeEEEEEEccccccccccCHHHHHHHHHHcC--------CcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 5 899999999975432 22 2233332 4699999999999999999999988654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=129.19 Aligned_cols=125 Identities=18% Similarity=0.412 Sum_probs=99.3
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+.. ..+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 116 (203)
T 1zbd_A 38 VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQV 116 (203)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEE
T ss_pred CCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 577774443 3433 35799999999999999999999999999999999999888888888888776542 357999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+.... ..+...++ +.++++||++|.|++++|++|.+.+.+
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 117 LLVGNKCDMEDERVVSSERGRQLADHLG--------FEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp EEEEECTTCTTSCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEEEECcccCcccccCHHHHHHHHHHCC--------CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999764332 22333333 369999999999999999999988754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=129.74 Aligned_cols=125 Identities=22% Similarity=0.333 Sum_probs=96.7
Q ss_pred CCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~pi 129 (191)
T 2a5j_A 51 DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVI 129 (191)
T ss_dssp ---CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 36666443 345444 4789999999999999999999999999999999999888888888888876532 257999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... .. .+.... ++.++++||++|+|++++|++|++.+.+
T Consensus 130 ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 130 MLIGNKSDLESRRDVKREEGEAFAREH--------GLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECcccCCccccCHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999965332 22 222222 2469999999999999999999988764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=124.96 Aligned_cols=131 Identities=22% Similarity=0.385 Sum_probs=98.6
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC---CCCC
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP---SLNG 74 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~ 74 (137)
.||++.++ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
T 1wms_A 37 FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 116 (177)
T ss_dssp --CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTT
T ss_pred CCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCC
Confidence 47777554 3444444 799999999999999999999999999999999999888888888887775432 2367
Q ss_pred CcEEEEeeCCCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 75 IPLLVLGNKIDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+|+++++||+|+.+.. ...+....... ...++++++||++|+|++++|+++.+.+.++
T Consensus 117 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 117 FPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp SCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999996322 22333222210 1234699999999999999999999988754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=128.07 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=90.3
Q ss_pred Cccccee--eEEEeC--CEEEEEEecCCccc--cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 3 PTVGFNM--RKVTKG--NVTIKLWDLGGQPR--FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 3 pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~--~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
||.|.+. ..+..+ .+.+.+|||||++. +..+...+++.++++++|+|++++.+++.+..|+..+.......++|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p 113 (175)
T 2nzj_A 34 EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP 113 (175)
T ss_dssp CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC
T ss_pred CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC
Confidence 5566443 334433 46899999999987 56777888999999999999999999998888888877654446799
Q ss_pred EEEEeeCCCCCCCCCH--HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.+.. .+ ....+ +++++++||++|+|++++|++|.+.+.+
T Consensus 114 iilv~NK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 114 IILVGNKADLARCREVSVEEGRACAVVF--------DCKFIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHHHHHH--------TSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEEChhhccccccCHHHHHHHHHHc--------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999765332 22 22222 2469999999999999999999998864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=125.26 Aligned_cols=126 Identities=17% Similarity=0.294 Sum_probs=99.0
Q ss_pred CCccccee-eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~-~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+ ..+..+ ...+.+|||||++.+...+..+++.++++++|+|++++.+++.+..|+..+.......++|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1kao_A 33 DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112 (167)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE
T ss_pred CCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 45666333 233333 466999999999999999999999999999999999988888888888888765545689999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+.... ..+...++ ++++++||++|+|+++++++|.+.+.+
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 113 LVGNKVDLESEREVSSSEGRALAEEWG--------CPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHHHT--------SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcccccccCCHHHHHHHHHHhC--------CCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 99999998654332 22333333 359999999999999999999988764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=130.03 Aligned_cols=127 Identities=16% Similarity=0.247 Sum_probs=98.0
Q ss_pred CCCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. +. ...+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+ ..|...+... ..++|
T Consensus 52 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p 129 (194)
T 3reg_A 52 YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAK 129 (194)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSE
T ss_pred cCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 35788766543 33 3457789999999999999999999999999999999999888886 5676666543 35799
Q ss_pred EEEEeeCCCCCCC----CCHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEA----LSKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++|+||+|+.+. .... ++...++.. .++++||++|+|++++|+++.+.+.++
T Consensus 130 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 130 TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV-------AYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp EEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS-------CEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred EEEEEEChhhccCCCCcccHHHHHHHHHhcCCC-------EEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999753 1222 233333321 299999999999999999999988754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=128.25 Aligned_cols=124 Identities=25% Similarity=0.479 Sum_probs=99.2
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+...+ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+... ..++|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ 116 (181)
T 3tw8_B 39 ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCR 116 (181)
T ss_dssp TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEE
T ss_pred CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 46666433 4455555 88999999999999999999999999999999999998999888888888653 257999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+.... ......++ ++++++||++|+|++++|++|.+.+.+
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 117 ILVGNKNDDPERKVVETEDAYKFAGQMG--------IQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHT--------CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCchhcccCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999998754332 22333333 359999999999999999999998764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=127.69 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=98.4
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... .++|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi 118 (186)
T 2bme_A 40 NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVI 118 (186)
T ss_dssp CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE
T ss_pred CCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcE
Confidence 46666443 3454444 7899999999999999999999999999999999998888888888877755322 57999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+..... ..+...... ..++.++++||++|+|++++|+++.+.+.+
T Consensus 119 ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 119 ILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999964332 222222111 113469999999999999999999988754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-23 Score=132.16 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=86.5
Q ss_pred CCccc--ceeeEEEeC----CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CC
Q 032598 2 IPTVG--FNMRKVTKG----NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LN 73 (137)
Q Consensus 2 ~pt~~--~~~~~~~~~----~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~ 73 (137)
.||++ +....+..+ .+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... ..
T Consensus 52 ~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 131 (208)
T 2yc2_C 52 AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRER 131 (208)
T ss_dssp ---------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTS
T ss_pred CCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhccccc
Confidence 46776 344455544 57999999999999999999999999999999999999899998899888876432 25
Q ss_pred CCcEEEEeeCCCCCC-CCC--HHHHHHHhCCCCCCCCceeEEEeeccc-CCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPE-ALS--KEDLMEQMGLKSITDREVCCYMISCKN-STNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~v~~~~~~i~~~~~~ 135 (137)
++|+++|+||+|+.+ ... ..+....... .++.++++||++ |+|++++|++|.+.+.+
T Consensus 132 ~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 132 PLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----NTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp CCEEEEEEECC-------CCCHHHHHHHHHH-----TTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccchhhccCCHHHHHHHHHH-----cCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 799999999999976 322 2222222211 124699999999 99999999999987753
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-23 Score=144.02 Aligned_cols=134 Identities=20% Similarity=0.275 Sum_probs=107.3
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 71 (137)
.||+|++...+..+++.+++|||+|++++++.|.+|+++++++|+|+|++ +..++.+...|+..+.....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 58899999999999999999999999999999999999999999999998 56678888888888887666
Q ss_pred CCCCcEEEEeeCCCCCCCC-----------------CHH----HHHHHh------C-CCCCCC-----------CceeEE
Q 032598 72 LNGIPLLVLGNKIDKPEAL-----------------SKE----DLMEQM------G-LKSITD-----------REVCCY 112 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~-----------------~~~----~~~~~~------~-~~~~~~-----------~~~~~~ 112 (137)
..++|+++++||+|+.... ... .+...+ . ...... +.+.++
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 6789999999999975311 111 122233 1 111111 468899
Q ss_pred EeecccCCChHHHHHHHHHhhhh
Q 032598 113 MISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 113 ~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|||+++.||+.+|..+.+.+.+
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-23 Score=132.01 Aligned_cols=127 Identities=21% Similarity=0.226 Sum_probs=99.4
Q ss_pred CCCcccceeeE-EEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. +.. +.+.+.+|||||++. ...+..+++.+|++++|+|++++.+++.+..|+..+.......++|+
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi 135 (196)
T 2atv_A 57 YDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 135 (196)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE
T ss_pred cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence 35777755543 333 357899999999988 78889999999999999999998889888888887766434468999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCC-ChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNST-NIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+... .. ++...+ ++.++++||++|+ |++++|++|++.+.++
T Consensus 136 ilv~NK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 136 ILVGNKADLDHSRQVSTEEGEKLATEL--------ACAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHH--------TSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHHHh--------CCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 99999999975432 22 223333 2469999999999 9999999999988653
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=128.83 Aligned_cols=128 Identities=23% Similarity=0.363 Sum_probs=99.1
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 116 (206)
T 2bcg_Y 38 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLK 116 (206)
T ss_dssp CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 577775443 44444 4689999999999999999999999999999999999989998888888776543 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+... .......... .+++++++||++|+|++++|++|.+.+.+
T Consensus 117 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 117 LLVGNKCDLKDKRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp EEEEECTTCTTTCCSCHHHHHHHHHH-----TTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccccCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999976432 2222211111 12359999999999999999999988754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-22 Score=123.86 Aligned_cols=128 Identities=21% Similarity=0.277 Sum_probs=98.0
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+... ...+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+... ..+++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~i 114 (170)
T 1z0j_A 36 NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVV 114 (170)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEE
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcE
Confidence 577774443 34433 488999999999999999999999999999999999988888888888877653 2367999
Q ss_pred EEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++||+|+.+.... .+....+.. ..+++++++||++|+|++++|+++.+.+.
T Consensus 115 ilv~nK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 115 AIAGNKCDLTDVREVMERDAKDYAD----SIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHH----HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEEECCccccccccCHHHHHHHHH----HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 999999999754332 111111110 11346999999999999999999998775
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=130.16 Aligned_cols=126 Identities=21% Similarity=0.363 Sum_probs=91.5
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+ ..+.. +.+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 58 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 136 (199)
T 2p5s_A 58 SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPI 136 (199)
T ss_dssp -------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCE
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 46676443 33443 34789999999999999999999999999999999999888888888887775432 257899
Q ss_pred EEEeeCCCCCC------CCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPE------ALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~------~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+.+ ... .. .+.... ++.++++||++|+|++++|.+|++.+.++
T Consensus 137 ilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 137 MLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY--------GALFCETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp EEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH--------TCEEEECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred EEEEECcccccccccccccccCHHHHHHHHHHc--------CCeEEEeeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999852 111 11 222222 34699999999999999999999988754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=127.32 Aligned_cols=128 Identities=22% Similarity=0.325 Sum_probs=99.2
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+. ...+.+.+|||||++++...+..+++.+|++++|+|+++..++..+..|+..+.... ..++|+
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~pi 133 (193)
T 2oil_A 55 RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVV 133 (193)
T ss_dssp CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeE
Confidence 467775443 333 245889999999999999999999999999999999999888888888888886643 367999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+..... ..+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 134 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 134 MLVGNKSDLSQAREVPTEEARMFAEN-----NGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999975432 2222222111 13469999999999999999999988764
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=139.11 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=92.3
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHH---hHHHHhccCCEEEEEEeCCCCCChHHHHHHH----HHHhcCCCCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---MWERYCRAVSAIVYVVDAADYDNLPVSRSEL----HDLLSKPSLNG 74 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~---~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~ 74 (137)
.||+|.++..+ ...+++++|||+||++|+. .+..|+++++++++|+|+++. +.....|+ ..+... .++
T Consensus 32 ~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~--~~~ 106 (331)
T 3r7w_B 32 ESTSNPSLEHF-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKV--NPS 106 (331)
T ss_dssp CCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHH--CTT
T ss_pred cCeeeeeeEEE-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhc--CCC
Confidence 58999888877 3568999999999999964 468999999999999999987 33333333 333221 257
Q ss_pred CcEEEEeeCCCCCCCCCH--------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEALSK--------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+++++||+|+...... .+..+.+........++.|++|||++ .||.++|..+++.+..
T Consensus 107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 999999999999764221 11222333211112468899999997 6999999999987753
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-22 Score=126.66 Aligned_cols=111 Identities=21% Similarity=0.346 Sum_probs=89.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-CCHHHH
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-LSKEDL 95 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~ 95 (137)
..+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+... .++|+++|+||+|.... ....+.
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcccccCCHHHH
Confidence 88999999999999999999999999999999999988888888888888654 23999999999994221 223333
Q ss_pred HHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 96 MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
...... .++.++++||++|+|++++|++|.+.+.+
T Consensus 170 ~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 170 QKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp HHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 332221 13469999999999999999999988764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=122.92 Aligned_cols=127 Identities=18% Similarity=0.300 Sum_probs=98.7
Q ss_pred CCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+.. ..+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i 112 (166)
T 2ce2_X 33 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112 (166)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 456664433 2333 3477899999999999999999999999999999999988888888888877664434579999
Q ss_pred EEeeCCCCCCCCC-H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALS-K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||+|+.+... . .++...++ ++++++||++|+|++++++++.+.+.++
T Consensus 113 iv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 166 (166)
T 2ce2_X 113 LVGNKSDLAARTVESRQAQDLARSYG--------IPYIETSAKTRQGVEDAFYTLVREIRQH 166 (166)
T ss_dssp EEEECTTCSCCCSCHHHHHHHHHHHT--------CCEEEECTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEEchhhhhcccCHHHHHHHHHHcC--------CeEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999876322 2 22333333 3599999999999999999999988653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=127.77 Aligned_cols=126 Identities=12% Similarity=0.159 Sum_probs=90.7
Q ss_pred CCCcccceee-EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCC
Q 032598 1 MIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~ 75 (137)
+.||++..+. .+.. ..+.+.+|||||+++ ..+++.+|++++|+|++++.+++.+..|+..+... ....++
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (178)
T 2iwr_A 35 LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGL 109 (178)
T ss_dssp CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3688885543 3443 347899999999987 45788999999999999999999888865544332 122579
Q ss_pred cEEEEeeCCCCCC--CC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPE--AL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++++||+|+.. .+ ...+....... ...+.++++||++|+|++++|+++++.+.+
T Consensus 110 piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 110 ALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp EEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 9999999999842 22 22222221110 013569999999999999999999988754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=126.62 Aligned_cols=124 Identities=24% Similarity=0.426 Sum_probs=98.2
Q ss_pred CCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++. .+..+ ...+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... .+.|+
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~pi 112 (168)
T 1z2a_A 35 KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPT 112 (168)
T ss_dssp SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCE
T ss_pred CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 577774443 34433 5789999999999999999999999999999999999888888888888776542 57899
Q ss_pred EEEeeCCCCCCCCC--HHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+ +...++ +.++++||++|+|+++++++|.+.+.+
T Consensus 113 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 113 ALVQNKIDLLDDSCIKNEEAEGLAKRLK--------LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHHHHHT--------CEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred EEEEECcccCcccccCHHHHHHHHHHcC--------CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 99999999865432 222 233332 369999999999999999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-23 Score=134.25 Aligned_cols=126 Identities=23% Similarity=0.323 Sum_probs=96.5
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. ...+.+.+|||||++++..++..+++.+|++++|+|++++.+++.+. .|+..+.... +++|
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~p 115 (212)
T 2j0v_A 38 YIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVP 115 (212)
T ss_dssp CCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCC
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCC
Confidence 4578885554 233 34589999999999999999999999999999999999998888876 6777775532 4799
Q ss_pred EEEEeeCCCCCCCC----------CH---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEAL----------SK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.. .. .++...++. ..++++||++|+|++++|+++.+.+.+
T Consensus 116 iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 116 IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA-------AAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC-------SEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC-------ceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 99999999986542 11 122333332 269999999999999999999988764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-23 Score=132.12 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=94.6
Q ss_pred CCCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC--CCCC
Q 032598 1 MIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS--LNGI 75 (137)
Q Consensus 1 ~~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~ 75 (137)
+.||++..+. .+ +.+.+.+.+|||||+++++.+ ..+++.+|++++|+|+++..+++.+..|+..+..... ..++
T Consensus 50 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 128 (187)
T 3c5c_A 50 YDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSI 128 (187)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 3578885543 22 334588999999999988775 6799999999999999999999998888888765321 2579
Q ss_pred cEEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeec-ccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISC-KNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++++||+|+.+.+. .. ++...++ +.++++|| ++|+|++++|+++++.+.+
T Consensus 129 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 129 PALLLGNKLDMAQYRQVTKAEGVALAGRFG--------CLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CEEEEEECGGGGGGCSSCHHHHHHHHHHHT--------CEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECcchhhcCccCHHHHHHHHHHcC--------CcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 9999999999965432 22 3333333 36999999 8999999999999998864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-22 Score=124.31 Aligned_cols=126 Identities=27% Similarity=0.445 Sum_probs=95.1
Q ss_pred CCccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..+ .+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..++|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 111 (170)
T 1g16_A 33 ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQL 111 (170)
T ss_dssp -----CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 46666443 344433 4789999999999999999999999999999999999888888888888776542 257999
Q ss_pred EEEeeCCCCCCCCC-H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS-K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+... . ..+...++ ++++++||++|+|++++|+++.+.+.++
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 112 LLVGNKSDMETRVVTADQGEALAKELG--------IPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp EEEEECTTCTTCCSCHHHHHHHHHHHT--------CCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEEECccCCcCccCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999954322 2 22333333 3599999999999999999999988653
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=127.68 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=96.9
Q ss_pred CCCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|++++.+++.+. .|+..+... ..++|
T Consensus 47 ~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p 124 (194)
T 2atx_A 47 YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVP 124 (194)
T ss_dssp CCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCC
T ss_pred CCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 3578875553 34433 488999999999999999999999999999999999988888876 677777653 24799
Q ss_pred EEEEeeCCCCCCCC--------------CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEAL--------------SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+.... ... .+...++. +.++++||++|+|++++|+++.+.+.
T Consensus 125 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA-------CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-------SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC-------cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999997531 111 12222221 25999999999999999999998875
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-23 Score=134.77 Aligned_cols=124 Identities=21% Similarity=0.408 Sum_probs=99.9
Q ss_pred CCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|.+..... .+++.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... .++|+
T Consensus 45 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ 122 (221)
T 3gj0_A 45 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPI 122 (221)
T ss_dssp ETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 577775554432 346889999999999999999999999999999999999988988888988887642 47999
Q ss_pred EEEeeCCCCCCCCCHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+..... .+.... ++.++++||++|.|++++|++|.+.+.+
T Consensus 123 ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 123 VLCGNKVDIKDRKVKAKSIVFHRKK--------NLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp EEEEECTTSSSCSSCGGGCCHHHHH--------TCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred EEEEECCccccccccHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999997543321 122222 3469999999999999999999998764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=128.18 Aligned_cols=125 Identities=21% Similarity=0.434 Sum_probs=99.0
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+. .+.. +.+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 52 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 130 (189)
T 2gf9_A 52 VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQV 130 (189)
T ss_dssp CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 577775543 3333 35789999999999999999999999999999999999888888888888776542 357999
Q ss_pred EEEeeCCCCCCCCC--H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+... . .++...++ +.++++||++|.|++++|++|.+.+.+
T Consensus 131 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 131 ILVGNKCDLEDERVVPAEDGRRLADDLG--------FEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccCCCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999975432 2 22333333 369999999999999999999988764
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=130.12 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=95.6
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+..... .++|+
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi 133 (200)
T 2o52_A 55 NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVV 133 (200)
T ss_dssp -----CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEE
T ss_pred CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcE
Confidence 46666443 3454444 8999999999999999999999999999999999998888888888887765432 67999
Q ss_pred EEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+...... .+...... ..++.++++||++|+|++++|++|.+.+.+
T Consensus 134 ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 134 ILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999654322 22222111 113469999999999999999999988754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=125.81 Aligned_cols=129 Identities=21% Similarity=0.338 Sum_probs=97.5
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++....|+..+.... ..++|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 122 (179)
T 2y8e_A 44 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVII 122 (179)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEE
T ss_pred CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 46666443 3344443 789999999999999999999999999999999999888888888888776532 257999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+... ..+....... .+++++++||++|+|++++|++|.+.+.++
T Consensus 123 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 123 MLVGNKTDLSDKRQVSTEEGERKAKE-----LNVMFIETSAKAGYNVKQLFRRVAAALPGM 178 (179)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH-----HTCEEEEEBTTTTBSHHHHHHHHHHTCC--
T ss_pred EEEEECCcccccCcCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 99999999865433 2222211111 134699999999999999999999987654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=132.21 Aligned_cols=128 Identities=20% Similarity=0.310 Sum_probs=93.9
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++++..++..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 43 ~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~pi 121 (223)
T 3cpj_B 43 KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAV 121 (223)
T ss_dssp ----CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEE
T ss_pred CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeE
Confidence 46777443 3455555 799999999999999999999999999999999999989998888888876542 357999
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+... ..+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 122 ilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 122 GLIGNKSDLAHLRAVPTEESKTFAQE-----NQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp EEEECCGGGGGGCCSCHHHHHHHHHH-----TTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred EEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999965432 2222221111 13469999999999999999999998864
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=126.76 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=96.3
Q ss_pred CCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCCCCcE
Q 032598 2 IPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ 77 (137)
.||++..+.. +. .+...+.+|||||++++...+..+++.+|++++|+|++++.+++....|+..+.... ...++|+
T Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi 112 (172)
T 2erx_A 33 IPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112 (172)
T ss_dssp CCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE
T ss_pred CCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE
Confidence 5677755543 22 234789999999999999999999999999999999999888877777776665431 2357999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.... . .+.... +++++++||++|+|++++|++|.+.+.++
T Consensus 113 i~v~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 113 MLVGNKCDESPSREVQSSEAEALARTW--------KCAFMETSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred EEEEEccccccccccCHHHHHHHHHHh--------CCeEEEecCCCCcCHHHHHHHHHHHHhhh
Confidence 999999998654332 1 122222 24699999999999999999999988654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=127.00 Aligned_cols=128 Identities=25% Similarity=0.323 Sum_probs=91.5
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. ...+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|+
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi 114 (170)
T 1z08_A 36 ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICL 114 (170)
T ss_dssp CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEE
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeE
Confidence 577775543 344 345789999999999999999999999999999999999888888888887765432 246899
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+... ..+....... .++.++++||++|+|++++|++|.+.+.+
T Consensus 115 ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 115 CIVGNKIDLEKERHVSIQEAESYAES-----VGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHH-----TTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEEECcccccccccCHHHHHHHHHH-----cCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 99999999975432 2222221111 12469999999999999999999998764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=126.66 Aligned_cols=125 Identities=27% Similarity=0.455 Sum_probs=98.1
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+..... .++|+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi 128 (213)
T 3cph_A 50 ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQL 128 (213)
T ss_dssp SCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEE
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCE
Confidence 46777444 3455555 7899999999999999999999999999999999998888888888887765422 47899
Q ss_pred EEEeeCCCCCCCCC-H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS-K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+..... . ..+...++ ++++++||++|+|++++|++|.+.+.+
T Consensus 129 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 129 LLVGNKSDMETRVVTADQGEALAKELG--------IPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp EEEEECTTCSSCCSCHHHHHHHHHHHT--------CCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcccccCHHHHHHHHHHcC--------CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999943222 1 22333333 359999999999999999999987754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=126.24 Aligned_cols=131 Identities=27% Similarity=0.430 Sum_probs=86.9
Q ss_pred CCccccee--eEEEe---CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC---CCC
Q 032598 2 IPTVGFNM--RKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP---SLN 73 (137)
Q Consensus 2 ~pt~~~~~--~~~~~---~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~ 73 (137)
.||++..+ ..+.. ....+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 117 (182)
T 1ky3_A 38 KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 117 (182)
T ss_dssp ---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTT
T ss_pred CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcC
Confidence 46776443 33433 35899999999999999999999999999999999999888888888887776432 236
Q ss_pred CCcEEEEeeCCCCCCCC---CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 74 GIPLLVLGNKIDKPEAL---SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+++++||+|+.... ...+....... ...+.++++||++|+|++++|+++.+.+.++
T Consensus 118 ~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 118 TFPFVILGNKIDAEESKKIVSEKSAQELAKS----LGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----TTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCccccccccCCHHHHHHHHHh----cCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 79999999999995432 22222221110 1234699999999999999999999987653
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-23 Score=130.56 Aligned_cols=125 Identities=21% Similarity=0.324 Sum_probs=87.0
Q ss_pred CCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .++...+.+.+|||||++++...+..+++.+|++++|+|++++.+++.+. .|+..+.... .++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi 115 (182)
T 3bwd_D 38 VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPI 115 (182)
T ss_dssp -------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCE
T ss_pred CCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 466664332 24556688889999999999999999999999999999999988888876 5777665532 47999
Q ss_pred EEEeeCCCCCCCCCH---------------HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK---------------EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... .++...++. ..++++||++|+|++++|+++.+.+.+
T Consensus 116 ilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA-------PAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-------SEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-------CEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999998654221 122333331 269999999999999999999988753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=125.39 Aligned_cols=127 Identities=18% Similarity=0.310 Sum_probs=88.1
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||++..+. .+..+ .+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.......++|++
T Consensus 51 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 130 (190)
T 3con_A 51 DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130 (190)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE
T ss_pred CCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 456664443 33333 467999999999999999999999999999999999988888888888877654333579999
Q ss_pred EEeeCCCCCCCC-CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEAL-SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||+|+.... ... ++...++ +.++++||++|+|++++|++|.+.+.+.
T Consensus 131 lv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 131 LVGNKCDLPTRTVDTKQAHELAKSYG--------IPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp EEEECTTCSCCCSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCcccCCHHHHHHHHHHcC--------CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 999999987532 222 2333333 3599999999999999999999988653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=129.94 Aligned_cols=127 Identities=18% Similarity=0.266 Sum_probs=96.4
Q ss_pred CCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcE
Q 032598 2 IPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ 77 (137)
.||++..+.. +. ...+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+..... ..++|+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi 117 (199)
T 2gf0_A 38 IPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117 (199)
T ss_dssp SCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE
T ss_pred cCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 5777755543 22 3357899999999999999999999999999999999998888777777665544211 247899
Q ss_pred EEEeeCCCCCCCCC-HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS-KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+..... .. .+...++ +.++++||++|+|++++|++|.+.+.++
T Consensus 118 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 118 MLVGNKCDETQREVDTREAQAVAQEWK--------CAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp EEEEECTTCSSCSSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred EEEEECccCCccccCHHHHHHHHHHhC--------CeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 99999999975322 22 2222222 3699999999999999999999987653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-22 Score=128.88 Aligned_cols=129 Identities=20% Similarity=0.225 Sum_probs=97.0
Q ss_pred CCcccceeeEEE--eC--C-EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMRKVT--KG--N-VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~~~--~~--~-~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||++....... .. . +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+.... ..++|
T Consensus 41 ~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 119 (218)
T 4djt_A 41 NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAP 119 (218)
T ss_dssp ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSC
T ss_pred CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 366665444332 21 2 889999999999999999999999999999999999988888888887776542 24589
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.... .+....+.. ..++.++++||++|.|++++|++|.+.+.+
T Consensus 120 iilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 120 IVVCANKIDIKNRQKISKKLVMEVLK----GKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp EEEEEECTTCC----CCHHHHHHHTT----TCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred EEEEEECCCCccccccCHHHHHHHHH----HcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 9999999999764222 222222221 224579999999999999999999998865
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=132.01 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=82.2
Q ss_pred CCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+. .|+..+... ..++|+
T Consensus 64 ~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi 141 (214)
T 2j1l_A 64 TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPI 141 (214)
T ss_dssp CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCE
T ss_pred CCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 467764443 233 34568999999999999999999999999999999999988888876 677766543 257999
Q ss_pred EEEeeCCCCCCCCCHH-----------------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSKE-----------------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+....... .+...++. ..++++||++|+|++++|++|.+.+.+.
T Consensus 142 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA-------VAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-------SEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCC-------CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999997643211 12222221 2699999999999999999999988753
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=125.35 Aligned_cols=131 Identities=23% Similarity=0.289 Sum_probs=89.7
Q ss_pred CcccceeeEEEeC---CEEEEEEecCCccccHH-hHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcC--CCCCCC
Q 032598 3 PTVGFNMRKVTKG---NVTIKLWDLGGQPRFRS-MWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSK--PSLNGI 75 (137)
Q Consensus 3 pt~~~~~~~~~~~---~~~~~~~Dt~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~ 75 (137)
||++.++..+..+ ++.+.+|||||++++.. ++..+++.++++++|+|+++.. ++.....++..+... ....++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (214)
T 2fh5_B 37 TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 116 (214)
T ss_dssp CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred CCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCC
Confidence 3445555555554 68999999999999998 8889999999999999998742 344444444433221 123579
Q ss_pred cEEEEeeCCCCCCCCCHHHHHHHhC-----------------------CCCCC-----------CCceeEEEeecccC--
Q 032598 76 PLLVLGNKIDKPEALSKEDLMEQMG-----------------------LKSIT-----------DREVCCYMISCKNS-- 119 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~~~~~~~~-----------------------~~~~~-----------~~~~~~~~~Sa~~~-- 119 (137)
|+++++||+|+............+. ..... ...+.|++|||++|
T Consensus 117 piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~ 196 (214)
T 2fh5_B 117 SLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRG 196 (214)
T ss_dssp EEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC----
T ss_pred CEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCc
Confidence 9999999999987655433222211 00000 11678999999999
Q ss_pred ----CChHHHHHHHHHhh
Q 032598 120 ----TNIDTVIDWLVKHS 133 (137)
Q Consensus 120 ----~~v~~~~~~i~~~~ 133 (137)
+|++++|++|.+.+
T Consensus 197 ~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 197 DTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCBCHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHhC
Confidence 99999999998763
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=129.80 Aligned_cols=125 Identities=15% Similarity=0.174 Sum_probs=92.5
Q ss_pred Cccccee--eEEEeC--CEEEEEEecCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 3 PTVGFNM--RKVTKG--NVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 3 pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|++|..+ ..+..+ .+.+.+|||+|++. ++.+...+++.++++++|||+++..+++.+..|...+.......++|+
T Consensus 69 ~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pi 148 (211)
T 2g3y_A 69 EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148 (211)
T ss_dssp --CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCE
T ss_pred CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 4555443 334433 46788999999887 556666778899999999999999999998888877765433357999
Q ss_pred EEEeeCCCCCCCCCH--HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.+.+.+ .+ ....+ ++.+++|||++|+|++++|+++++.+..
T Consensus 149 ilVgNK~DL~~~r~v~~~e~~~~a~~~--------~~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 149 ILVGNKSDLVRCREVSVSEGRACAVVF--------DCKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEChHHhcCceEeHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999654332 21 12222 2469999999999999999999998754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-22 Score=129.21 Aligned_cols=130 Identities=23% Similarity=0.353 Sum_probs=97.5
Q ss_pred CCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC---CCC
Q 032598 2 IPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS---LNG 74 (137)
Q Consensus 2 ~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~ 74 (137)
.||++..+. .+.. ..+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+..... ..+
T Consensus 38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
T 1vg8_A 38 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 117 (207)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGG
T ss_pred CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCC
Confidence 467774443 3333 348999999999999999889999999999999999998888888888877754321 247
Q ss_pred CcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+++++||+|+..... .......... ...+.++++||++|+|++++|++|.+.+.+
T Consensus 118 ~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 118 FPFVVLGNKIDLENRQVATKRAQAWCYS----KNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp SCEEEEEECTTSSCCCSCHHHHHHHHHH----TTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCcccccCHHHHHHHHHh----cCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999974322 2222222110 123469999999999999999999988754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-22 Score=130.56 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=95.7
Q ss_pred CCcccceee-EEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..++ +.+.+|||||++++..++..+++.+|++++|+|++++.+++.+. .|+..+... ..++|+
T Consensus 50 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ 127 (201)
T 2q3h_A 50 IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPI 127 (201)
T ss_dssp -CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCE
T ss_pred CCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 577775553 344444 67889999999999999999999999999999999998888886 677777653 247999
Q ss_pred EEEeeCCCCCCCC--------------CH---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEAL--------------SK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.... .. ..+...++. +.++++||++|+|++++|+++.+.+.+
T Consensus 128 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 128 ILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA-------ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC-------SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC-------cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 9999999986421 11 122222221 269999999999999999999988764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-22 Score=129.13 Aligned_cols=126 Identities=16% Similarity=0.248 Sum_probs=96.5
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+ ..|+..+... ..++|
T Consensus 36 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~p 113 (184)
T 1m7b_A 36 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTK 113 (184)
T ss_dssp CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCE
T ss_pred CCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCC
Confidence 3577775543 233 3458899999999999999999999999999999999998888887 5677666543 25799
Q ss_pred EEEEeeCCCCCCC--------------CCHH---HHHHHhCCCCCCCCceeEEEeecc-cCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSKE---DLMEQMGLKSITDREVCCYMISCK-NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+. .... ++...++ .+.++++||+ +|+|++++|+++.+.+.+
T Consensus 114 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 114 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------CcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999999642 1111 2233332 1369999998 689999999999998865
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-22 Score=130.86 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=94.0
Q ss_pred CCcccceee-E--EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~--~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. . ++...+.+.+|||||++++...+..+++.+|++++|+|+++..+++... .|+..+.... .++|+
T Consensus 60 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi 137 (204)
T 4gzl_A 60 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPI 137 (204)
T ss_dssp CCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCE
T ss_pred CCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCE
Confidence 466664333 2 3345577889999999999999999999999999999999998888876 6776665542 57999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCC----------CCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSIT----------DREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++|+||+|+.+.....+........... ....+++++||++|+|++++|+++.+.+
T Consensus 138 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 138 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999987543222111111110000 0113599999999999999999999865
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-22 Score=127.95 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=94.9
Q ss_pred CCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+. ...+.+.+|||||++++...+..+++.+|++++|+|++++.+++... .|+..+.... .++|+
T Consensus 35 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi 112 (186)
T 1mh1_A 35 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPI 112 (186)
T ss_dssp CCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCE
T ss_pred CCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCE
Confidence 567774443 233 34577889999999999999999999999999999999988888876 5777665432 37999
Q ss_pred EEEeeCCCCCCCCCHH-----------------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE-----------------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+..... .+...++ .++++++||++|+|++++|+++.+.+.+
T Consensus 113 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 113 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG-------AVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT-------CSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC-------CcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 9999999986532111 1112221 1369999999999999999999998864
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.2e-23 Score=142.19 Aligned_cols=121 Identities=16% Similarity=0.282 Sum_probs=90.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCC----------CCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
+.+.+++|||+|++++++.|.+++++++++++|+|++ +..+++....|+..+.......++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 667888888899888776545789999999999
Q ss_pred CCCCCC----C-------------------HHHH----HHHh------CC-CCCCCCceeEEEeecccCCChHHHHHHHH
Q 032598 85 DKPEAL----S-------------------KEDL----MEQM------GL-KSITDREVCCYMISCKNSTNIDTVIDWLV 130 (137)
Q Consensus 85 D~~~~~----~-------------------~~~~----~~~~------~~-~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 130 (137)
|+.+.. + ..+. ...+ .. .....+.+.+++|||++++||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 974210 0 1111 1111 00 00012345679999999999999999999
Q ss_pred Hhhhh
Q 032598 131 KHSKS 135 (137)
Q Consensus 131 ~~~~~ 135 (137)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=126.44 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=93.2
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+ ..|+..+... ..++|+
T Consensus 55 ~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi 132 (207)
T 2fv8_A 55 VPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPI 132 (207)
T ss_dssp ----CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCE
T ss_pred CCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCE
Confidence 477775553 34433 47899999999999999999999999999999999998888887 4566666542 257999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCC---------CCc-eeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSIT---------DRE-VCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.....+....+...... ..+ ..++++||++|+|++++|++|.+.+.+.
T Consensus 133 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 133 ILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp EEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999996542221111111110000 011 2689999999999999999999987643
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-22 Score=130.32 Aligned_cols=125 Identities=25% Similarity=0.475 Sum_probs=91.2
Q ss_pred Cccc--ceeeEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~--~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
||++ +....+..++ +.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+..|+..+..... .++|++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~i 142 (199)
T 3l0i_B 64 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKL 142 (199)
T ss_dssp HHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEE
T ss_pred CcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEE
Confidence 4444 3334455544 7899999999999999999999999999999999999999999999888866432 579999
Q ss_pred EEeeCCCCCCCCC-----HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALS-----KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+|+||+|+.+... ...+...++ +.++++||++|+|++++|++|.+.+.++
T Consensus 143 lv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 143 LVGNKCDLTTKKVVDYTTAKEFADSLG--------IPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp EC-CCSSCC--CCCCSCC-CHHHHTTT--------CCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred EEEECccCCccccCCHHHHHHHHHHcC--------CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999965432 233444443 3589999999999999999999988754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=125.10 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=95.4
Q ss_pred CCCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++.++. .+..+ .+.+.+|||||++++...+..+++.+|++++|+|+++..+++.+ ..|...+... ..++|
T Consensus 54 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p 131 (201)
T 2gco_A 54 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVP 131 (201)
T ss_dssp CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCC
T ss_pred cCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCC
Confidence 3577775553 34433 47899999999999999999999999999999999998888887 4566665442 24799
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCC---------CCCc-eeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSI---------TDRE-VCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.....+....+..... ...+ ..++++||++|+|++++|++|.+.+.+
T Consensus 132 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999764211111111100000 0011 268999999999999999999988753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-22 Score=130.36 Aligned_cols=126 Identities=16% Similarity=0.248 Sum_probs=96.8
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+ ..|+..+... ..++|
T Consensus 57 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~p 134 (205)
T 1gwn_A 57 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTK 134 (205)
T ss_dssp CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCE
T ss_pred cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCC
Confidence 3577775553 233 3458999999999999999999999999999999999998888887 5777776543 25799
Q ss_pred EEEEeeCCCCCCC--------------CCHH---HHHHHhCCCCCCCCceeEEEeecc-cCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEA--------------LSKE---DLMEQMGLKSITDREVCCYMISCK-NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+. .... ++...++ .+.++++||+ +|+|++++|+.+.+.+.+
T Consensus 135 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 135 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------CCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999999642 1111 2233332 1369999999 689999999999998865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-22 Score=127.43 Aligned_cols=132 Identities=13% Similarity=0.279 Sum_probs=94.1
Q ss_pred CCCcccceeeEEE-------eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCC-CChHHHHHHHHHHhcCCCC
Q 032598 1 MIPTVGFNMRKVT-------KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY-DNLPVSRSELHDLLSKPSL 72 (137)
Q Consensus 1 ~~pt~~~~~~~~~-------~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~ 72 (137)
+.||+|.++.... .+.+.+.+|||+|++++..+++.+++.++++++|+|++++ .+++.+..|+..+... .
T Consensus 33 ~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~ 110 (184)
T 2zej_A 33 QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--A 110 (184)
T ss_dssp ----CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--C
T ss_pred cceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--C
Confidence 3578886665432 2578999999999999999999999999999999999987 4688888888877543 2
Q ss_pred CCCcEEEEeeCCCCCCCCCHH----HHHHHhCCCCCCC-CceeEEEeecccCC-ChHHHHHHHHHhhhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSITD-REVCCYMISCKNST-NIDTVIDWLVKHSKS 135 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~ 135 (137)
.++|+++|+||+|+.+..... .....+... .+. ....++++||++|. |++++++.+.+.+.+
T Consensus 111 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 111 SSSPVILVGTHLDVSDEKQRKACMSKITKELLNK-RGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTC-TTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHh-cCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 478999999999997543322 222333211 111 11248999999997 999999999987764
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-21 Score=121.61 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=86.4
Q ss_pred CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHH---HHHhcCCC-CCCCcEEEEeeCC-CCCCCCCHHHHHHHh
Q 032598 25 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSEL---HDLLSKPS-LNGIPLLVLGNKI-DKPEALSKEDLMEQM 99 (137)
Q Consensus 25 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 99 (137)
+||.+.+++|++|++++|++|||+|++|.+.++ ....+ ..++.... ..+.|++|++||. |+....+..++.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 489999999999999999999999999986655 55555 33444332 3689999999995 788888889999999
Q ss_pred CCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 100 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
+.... .+.|++..|||++|+|+.+.++||++.+.+++
T Consensus 189 ~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 189 HLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 87665 47899999999999999999999999987654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-21 Score=122.63 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=85.7
Q ss_pred eCCEEEEEEecCCccccHHhH---HHHhccCCEEEEEEeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 14 KGNVTIKLWDLGGQPRFRSMW---ERYCRAVSAIVYVVDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~---~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+.+.+++|||||++++.... ..+++.+|++++|+|+++. +++.....|+..+... ..++|+++|+||+|+.+
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSC
T ss_pred CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCc
Confidence 456899999999999987766 8999999999999999997 4455555666655321 35799999999999865
Q ss_pred CCC-------H-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 89 ALS-------K-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 89 ~~~-------~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
... . ......+........++.++++||++ +|++++|..+++.+
T Consensus 144 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 144 DDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 311 1 11122222111113457899999999 99999999999875
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.8e-21 Score=121.53 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=84.7
Q ss_pred CCEEEEEEecCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-
Q 032598 15 GNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK- 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~- 92 (137)
..+.+.+|||+|++. ++.+...+++.++++++|||+++..+++....|...+.......++|+++++||+|+...+..
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~ 133 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSC
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccccc
Confidence 346778999999876 455667788899999999999999999988888776655333357999999999998653322
Q ss_pred -HH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 -ED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 -~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.+ ....+ ++.++++||++|+|++++|+++++.+.
T Consensus 134 ~~~~~~~a~~~--------~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 134 VSEGRAXAVVF--------DXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHT--------TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------CCceEEeccccCCCHHHHHHHHHHHHH
Confidence 21 11222 246999999999999999999998874
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-22 Score=129.36 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=92.7
Q ss_pred CCcccceee---EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~---~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .++...+.+.+|||||++++...+..+++.+|++++|+|++++.+++... .|+..+... ..++|+
T Consensus 60 ~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~pi 137 (204)
T 3th5_A 60 IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPI 137 (204)
Confidence 355553332 23455678889999999999999999999999999999999998888876 566655432 237999
Q ss_pred EEEeeCCCCCCCCCHHHHHHH---------hCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQ---------MGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+.+.....+.... .........+. .++++||++|+|++++|++|.+.+
T Consensus 138 ilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 138 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999754321111000 00001111233 689999999999999999998765
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-20 Score=115.05 Aligned_cols=123 Identities=21% Similarity=0.331 Sum_probs=90.5
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
+....+..++..+.+|||||++++...+..+++.+|++++|+|+++....... ..+..+. ..++|+++++||+|+
T Consensus 45 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl 119 (178)
T 2lkc_A 45 IGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDK 119 (178)
T ss_dssp CCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTS
T ss_pred eeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccC
Confidence 44456777889999999999999998888889999999999999886443332 2333332 247899999999999
Q ss_pred CCCCCHHHHHHHhCCCCC--CC--CceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 87 PEALSKEDLMEQMGLKSI--TD--REVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
... ...++...+..... .. ..+.++++||++|+|++++|++|.+.+..
T Consensus 120 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 120 PEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 764 33334443332111 11 13689999999999999999999988765
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=118.58 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=84.7
Q ss_pred ceeeEEEeCCEEEEEEecCCc------ccc---HHhHHHHhccCCEEEEEEeCCCCCChHH--HHHHHHHHhcCCCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQ------PRF---RSMWERYCRAVSAIVYVVDAADYDNLPV--SRSELHDLLSKPSLNGI 75 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~------~~~---~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~ 75 (137)
.....+..++..+.+|||||+ ++. ...+..++..+|++++|+|+++..+++. ...|+..+... ..++
T Consensus 66 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~ 143 (228)
T 2qu8_A 66 LYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNK 143 (228)
T ss_dssp EEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CC
T ss_pred eeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCC
Confidence 444455667899999999999 442 1223455788999999999999877642 23455555442 2479
Q ss_pred cEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 76 PLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+++|+||+|+.+...... ....+... ....+.++++||++|+|++++|++|.+.+.+
T Consensus 144 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDN--VKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEEECGGGCC--CCCHHHHHHHHHHHHH--CCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEeCcccCCchhhHHHHHHHHHHHHHh--cCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 9999999999976543211 11222100 0012579999999999999999999988764
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-20 Score=126.61 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=95.7
Q ss_pred CCcccceeeEEEe-CCEEEEEEecCCcccc-----HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCCC
Q 032598 2 IPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLNG 74 (137)
Q Consensus 2 ~pt~~~~~~~~~~-~~~~~~~~Dt~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (137)
.||++..+..+.. +++.+.+|||||++++ ...+..+++++|++++|+|+++..+++.+..|...+.... ..++
T Consensus 36 ~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~ 115 (307)
T 3r7w_A 36 GATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD 115 (307)
T ss_dssp CCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCC
Confidence 5788888877764 6899999999999988 6788889999999999999999999988866644333210 1257
Q ss_pred CcEEEEeeCCCCCCCCCH--------H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 75 IPLLVLGNKIDKPEALSK--------E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+++++||+|+.+.... . ++...++. ..++++++||++ .|+.++|..+++.+.
T Consensus 116 ~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~-----~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 116 AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF-----PNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC-----CSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred CeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC-----CCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 999999999999762111 1 12222221 135799999999 899999999887654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=111.13 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=84.7
Q ss_pred ceeeEEEeCCEEEEEEecCCccccH------HhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||++++. .+...+++ .++++++|+|+++. +....|+..+.. .++|++
T Consensus 40 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~----~~~p~i 112 (165)
T 2wji_A 40 KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME----MGANLL 112 (165)
T ss_dssp CCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH----TTCCEE
T ss_pred eeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHh----cCCCEE
Confidence 4445566778999999999998764 45566665 89999999999863 344456655543 368999
Q ss_pred EEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+.... ...++...++. +++++||++|+|++++|+++.+.+.
T Consensus 113 lv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 113 LALNKMDLAKSLGIEIDVDKLEKILGV--------KVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp EEEECHHHHHHTTCCCCHHHHHHHHTS--------CEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred EEEEchHhccccChhhHHHHHHHHhCC--------CEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 999999985322 23445555543 4999999999999999999998764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=126.07 Aligned_cols=118 Identities=14% Similarity=0.049 Sum_probs=92.2
Q ss_pred CCCcccceeeE-EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 1 MIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 1 ~~pt~~~~~~~-~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
+.||+|..+.. +..++ ++.+||| +++++.+++.+++++|++++|+|++++. ++..+..|+..+.. .++|++
T Consensus 47 ~~pTiGd~~~~~~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~pii 119 (301)
T 1u0l_A 47 LKIYVGDRVEYTPDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETV 119 (301)
T ss_dssp CCCCTTCEEEEECCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEE
T ss_pred CCCCCccEEEEEEcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEE
Confidence 46999966553 22233 7999999 9999999999999999999999999987 68888888876643 479999
Q ss_pred EEeeCCCCCCCCCH---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 79 VLGNKIDKPEALSK---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 79 vv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+|+||+|+.+.... .+....++.. +.++++||++|+|++++|..+..
T Consensus 120 lv~NK~DL~~~~~v~~~~~~~~~~~~~------~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 120 MVINKMDLYDEDDLRKVRELEEIYSGL------YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp EEECCGGGCCHHHHHHHHHHHHHHTTT------SCEEECCTTTCTTHHHHHHHHSS
T ss_pred EEEeHHHcCCchhHHHHHHHHHHHhhh------CcEEEEECCCCcCHHHHHHHhcC
Confidence 99999999754332 2334444321 46999999999999999988754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=114.63 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=82.7
Q ss_pred EEEEEecCC----------ccccHHhHHHHhccC---CEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGG----------QPRFRSMWERYCRAV---SAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g----------~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
++.+||||| ++.+...+..+++.+ |++++|+|+++..+..... ....+.. .++|+++++||+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~ 144 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKA 144 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECG
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECc
Confidence 799999999 778888888888887 9999999999987766532 1122211 568999999999
Q ss_pred CCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 85 DKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 85 D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+.+..... ++.+.++. ...+.++++||++|+|++++|++|.+.+.
T Consensus 145 Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 145 DKIPKGKWDKHAKVVRQTLNI----DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GGSCGGGHHHHHHHHHHHHTC----CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccCChHHHHHHHHHHHHHHcc----cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 998765443 33333432 23467999999999999999999998775
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-20 Score=125.38 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=93.8
Q ss_pred CCcccceee-EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHH-HHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-SELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~-~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+. .+..+ .+.+.+|||||++.+...+..+++.+|++++|+|+++..+++.+. .|+..+.... .++|+
T Consensus 185 ~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ 262 (332)
T 2wkq_A 185 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPI 262 (332)
T ss_dssp CCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCE
T ss_pred CCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcE
Confidence 466664443 23333 466779999999999999999999999999999999988888876 5666665432 37999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCC---------CCCc-eeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSI---------TDRE-VCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.....+.......... ...+ ..++++||++|+|++++|+++.+.+.+.
T Consensus 263 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 263 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 999999998643111111111000000 0012 2699999999999999999999987653
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-19 Score=110.25 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=82.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccc-------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~-------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
.....+..++..+.+|||||+.. +...+..+++.+|++++|+|+++..+... .++...... .++|+++
T Consensus 39 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~il 113 (161)
T 2dyk_A 39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVIL 113 (161)
T ss_dssp CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEE
T ss_pred ceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEE
Confidence 44455667788999999999987 45667778999999999999998644432 333333322 4689999
Q ss_pred EeeCCCCCCCCCHHHHHHHhCCCCCCCCce-eEEEeecccCCChHHHHHHHHHhh
Q 032598 80 LGNKIDKPEALSKEDLMEQMGLKSITDREV-CCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 80 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++||+|+.+... .. ..+. ..++ .++++||++|+|++++|+++.+.+
T Consensus 114 v~nK~Dl~~~~~--~~-~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 114 VATKVDDPKHEL--YL-GPLY-----GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EEECCCSGGGGG--GC-GGGG-----GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEECcccccchH--hH-HHHH-----hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 999999975421 11 1111 1122 589999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=112.18 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=82.9
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHh--------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSM--------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
+....+..++..+.+|||||++++... ...+++.+|++++|+|+++..+++. ..|+..+.... ..++|++
T Consensus 42 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~i 119 (172)
T 2gj8_A 42 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPIT 119 (172)
T ss_dssp CEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEE
T ss_pred eeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEE
Confidence 334556677888999999998653211 1245789999999999999887763 35655554432 2479999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+.+.... + .......++++||++|+|++++|++|.+.+.
T Consensus 120 lv~NK~Dl~~~~~~------~----~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 120 VVRNKADITGETLG------M----SEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEEECHHHHCCCCE------E----EEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred EEEECccCCcchhh------h----hhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 99999998542110 0 0112457999999999999999999998765
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=120.10 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=89.4
Q ss_pred cCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHH---HHhcCCC-CCCCcEEEEeeC-CCCCCCCCHHHHHHH
Q 032598 24 LGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELH---DLLSKPS-LNGIPLLVLGNK-IDKPEALSKEDLMEQ 98 (137)
Q Consensus 24 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 98 (137)
.+||.+.+++|++|++++|++|||+|++|.+.++ ....+. .++.... ..+.|++|++|| .|+.+..+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4789999999999999999999999999987665 444333 3333221 367999999997 589888888999999
Q ss_pred hCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 99 MGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 99 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
++.... .+.|++..|||++|+|+.+.++||++.+.+++
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 987665 47899999999999999999999999987654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=112.03 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=84.7
Q ss_pred CCcccceeeE-EEeCCEEEEEEecCC----------ccccHHhHHHHhccC---CEEEEEEeCCCCCChHHHHHHHHHHh
Q 032598 2 IPTVGFNMRK-VTKGNVTIKLWDLGG----------QPRFRSMWERYCRAV---SAIVYVVDAADYDNLPVSRSELHDLL 67 (137)
Q Consensus 2 ~pt~~~~~~~-~~~~~~~~~~~Dt~g----------~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~ 67 (137)
.|+.+..... ....+.++.+||||| ++.+...+..+++.+ +++++|+|+++..+..... ....+.
T Consensus 52 ~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~ 130 (195)
T 3pqc_A 52 SKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWMK 130 (195)
T ss_dssp CSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH
T ss_pred cCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH-HHHHHH
Confidence 3555533322 222345788999999 677888888888776 9999999998765543321 111221
Q ss_pred cCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 68 SKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 68 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
. .++|+++|+||+|+.+........+.+.........++++++||++|+|++++|++|.+.+.+
T Consensus 131 ~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 131 S----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp H----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred H----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 1 268999999999997654433222222110001123569999999999999999999998764
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-20 Score=123.73 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=84.6
Q ss_pred EEeCCEEEEEEe-----------------------cCCccccHHhHHHHhc---------------------cCCEEEEE
Q 032598 12 VTKGNVTIKLWD-----------------------LGGQPRFRSMWERYCR---------------------AVSAIVYV 47 (137)
Q Consensus 12 ~~~~~~~~~~~D-----------------------t~g~~~~~~~~~~~~~---------------------~~~~~i~v 47 (137)
++...+.+.+|| ++|++++..++..+++ ++|++++|
T Consensus 90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV 169 (255)
T 3c5h_A 90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG 169 (255)
T ss_dssp ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence 345678999999 6677777777777776 79999999
Q ss_pred EeCCCC--CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 48 VDAADY--DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 48 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+|++++ .+++.+..|+..+.......++|+++|+||+|+.+.....+....... ..++.++++||++|+|++++
T Consensus 170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLA 245 (255)
T ss_dssp EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHH
T ss_pred EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHH
Confidence 999998 899999999888765322257999999999999654333222221111 12346999999999999999
Q ss_pred HHHHHHhhh
Q 032598 126 IDWLVKHSK 134 (137)
Q Consensus 126 ~~~i~~~~~ 134 (137)
|++|++.+.
T Consensus 246 f~~l~~~l~ 254 (255)
T 3c5h_A 246 FSTLVQLID 254 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-20 Score=116.08 Aligned_cols=131 Identities=19% Similarity=0.192 Sum_probs=88.5
Q ss_pred CcccceeeEEEeCCEEEEEEecCC-----------ccccHHhHHHHhcc-CCEEEEEEeCCCCCChHHH-HHHHHH----
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYCRA-VSAIVYVVDAADYDNLPVS-RSELHD---- 65 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g-----------~~~~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~---- 65 (137)
|++......+... .+.+||||| ++.+...+..+++. ++++++++++.+..++... ..|...
T Consensus 32 ~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~ 109 (190)
T 2cxx_A 32 PGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIP 109 (190)
T ss_dssp TTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCC
T ss_pred CCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccH
Confidence 4444444455544 789999999 67788888888887 7766666666666666654 344321
Q ss_pred ----HhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 66 ----LLSKPSLNGIPLLVLGNKIDKPEAL--SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 66 ----~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+.......++|+++++||+|+.... ...++...++... ......++++||++|+|++++|+++.+.+.++
T Consensus 110 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 110 IDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 1111112579999999999997653 2344555555421 00123589999999999999999999988653
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-18 Score=115.80 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=88.7
Q ss_pred eEEEeC-CEEEEEEecCCccccH----------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 10 RKVTKG-NVTIKLWDLGGQPRFR----------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 10 ~~~~~~-~~~~~~~Dt~g~~~~~----------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
..+..+ +.++.+|||||+.+.. ..+..+++.+|++++|+|+++..+......|+..+.. .++|++
T Consensus 51 ~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvi 126 (308)
T 3iev_A 51 GVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVI 126 (308)
T ss_dssp EEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEE
T ss_pred EEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEE
Confidence 345666 8999999999985433 5667788999999999999998888876666666644 468999
Q ss_pred EEeeCCCCC-CCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKP-EALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+. +..........+.... .....++++||++|+|++++++++.+.+.+
T Consensus 127 lV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 127 VVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 999999997 3333322222221100 012359999999999999999999987753
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-18 Score=108.27 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=88.2
Q ss_pred ceeeEEEeCCEEEEEEecCCccccH------HhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||++.+. .++..+++ .++++++|+|.++ ++....|+..+.. .++|++
T Consensus 44 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~pii 116 (188)
T 2wjg_A 44 KKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLL 116 (188)
T ss_dssp EEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEE
T ss_pred ceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEE
Confidence 4445677788999999999998774 45666765 4999999999975 5555667666654 478999
Q ss_pred EEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||+|+.... ...++...++. .++++||++|+|++++|+++.+.+.++
T Consensus 117 lv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 117 LALNKMDLAKSLGIEIDVDKLEKILGV--------KVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp EEEECHHHHHHTTCCCCHHHHHHHHTS--------CEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEEEhhhccccccchHHHHHHHHHhCC--------CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 999999985432 34455555543 499999999999999999999987653
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-18 Score=112.14 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=79.9
Q ss_pred eCCEEEEEEecCC----------ccccHHhHHHHhcc---CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 14 KGNVTIKLWDLGG----------QPRFRSMWERYCRA---VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 14 ~~~~~~~~~Dt~g----------~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.++..+.+||||| ++.+...+..+++. +|++++|+|+++..+... ..++..+.. .++|+++|
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----~~~p~i~v 150 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----TGKPIHSL 150 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----GCCCEEEE
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEE
Confidence 3468899999999 45557777778776 777999999988544322 233333332 56899999
Q ss_pred eeCCCCCCCCCHHH----HHHHhCCC--CCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKED----LMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||+|+........ +...+... ......++++++||++|+|+++++++|.+.+..
T Consensus 151 ~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 151 LTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred EeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 99999976433221 22222110 000135679999999999999999999988753
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-17 Score=118.07 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=87.6
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
++.+++|||||+.++...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+......
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~ 144 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVA 144 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHH
Confidence 4899999999999999999999999999999999999877776666655442 46899999999999765422
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++... ..++++||++|.|++++++++.+.+.
T Consensus 145 ~ei~~~lg~~~-----~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 145 EEIEDIVGIDA-----TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHTCCCC-----TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHhCCCc-----ceEEEeecccCCCchhHHHHHhhcCC
Confidence 34445444321 23899999999999999999998764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=106.01 Aligned_cols=127 Identities=20% Similarity=0.332 Sum_probs=94.2
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|..+ ..+..++ +.+.+|||+|++.++..+..+++.++++++|+|+++..+++.+..|+..+... ...+.|+
T Consensus 35 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i 113 (199)
T 2f9l_A 35 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVI 113 (199)
T ss_dssp -CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeE
Confidence 47777443 4455444 67889999999999888899999999999999999987787777777666432 1246899
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++||+|+.+... .... ..+.. ..++.++++||+++.|++++|++|.+.+.
T Consensus 114 ~~v~nK~Dl~~~~~~~~~~a-~~l~~----~~~~~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 114 MLVGNKSDLRHLRAVPTDEA-RAFAE----KNNLSFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EEEEECTTCGGGCCSCHHHH-HHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECcccccccCcCHHHH-HHHHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999965432 2222 22211 12346899999999999999999998775
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=111.06 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=83.9
Q ss_pred EEEeCCEEEEEEecCCccc--------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 11 KVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.+..++.++.+|||||..+ +......+++.+|++++|+|+++..+.. ..++...+... ..++|+++++|
T Consensus 49 i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~N 125 (301)
T 1wf3_A 49 ILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGN 125 (301)
T ss_dssp EEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEE
T ss_pred EEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEE
Confidence 3556789999999999876 4566677889999999999999865543 34443333321 14799999999
Q ss_pred CCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 83 KIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 83 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+|+.+... ..+....+ . ....++++||++|.|++++++++.+.+.
T Consensus 126 K~Dl~~~~~~~~~~~~~~-~-----~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 126 KLDAAKYPEEAMKAYHEL-L-----PEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp CGGGCSSHHHHHHHHHHT-S-----TTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred CcccCCchHHHHHHHHHh-c-----CcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 999975433 33333433 1 1235899999999999999999988653
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-18 Score=123.88 Aligned_cols=124 Identities=20% Similarity=0.291 Sum_probs=86.7
Q ss_pred CCcccceeeEE------------EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC
Q 032598 2 IPTVGFNMRKV------------TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK 69 (137)
Q Consensus 2 ~pt~~~~~~~~------------~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 69 (137)
.||+|.++.+. +.++..+.+|||||++.+...+..+++.+|++++|+|+++. +....|+..+...
T Consensus 71 ~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~ 147 (535)
T 3dpu_A 71 SQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKY 147 (535)
T ss_dssp ----CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHH
T ss_pred CCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHh
Confidence 47787666532 12368999999999999999999999999999999999865 4455677666553
Q ss_pred CCCCCCcEEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 70 PSLNGIPLLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 70 ~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
. .+.|+++|+||+|+.+... .......+... ++.++++||++|+|++++++++.+.+.+
T Consensus 148 ~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 148 G--GKSPVIVVMNKIDENPSYNIEQKKINERFPAI-----ENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp S--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG-----TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred C--CCCCEEEEEECCCcccccccCHHHHHHHHHhc-----CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 2 4689999999999976543 23333333221 2359999999999999999999988764
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-17 Score=109.12 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=85.4
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHH------hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||+..+.+ +...++ +.+|++++|+|+++.++ ...|...+.. .++|++
T Consensus 42 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvi 114 (258)
T 3a1s_A 42 KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVI 114 (258)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEE
T ss_pred EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEE
Confidence 34445667789999999999987653 335565 58999999999998543 3345555543 379999
Q ss_pred EEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++||+|+.... ....+...++. +++++||++|.|++++|+++.+.+.
T Consensus 115 lv~NK~Dl~~~~~i~~~~~~l~~~lg~--------~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 115 LAMTAIDEAKKTGMKIDRYELQKHLGI--------PVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EEEECHHHHHHTTCCBCHHHHHHHHCS--------CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCccchHHHHHHHHHHcCC--------CEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 999999985322 24556666654 4999999999999999999998764
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=116.78 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=75.5
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHH--------HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWER--------YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||++.+...+.. +++.+|++++|+|++++.+++....+...+... .++|++
T Consensus 271 ~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piI 347 (476)
T 3gee_A 271 YIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFL 347 (476)
T ss_dssp --CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEE
T ss_pred EEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEE
Confidence 444567778999999999999876654433 478899999999999988875432222222222 269999
Q ss_pred EEeeCCCCCCCCCHHH--HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKED--LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+........ +... + .++++++||++|+|+++++++|.+.+.
T Consensus 348 vV~NK~Dl~~~~~~~~~~l~~~-~-------~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 348 TVANKLDRAANADALIRAIADG-T-------GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEEECTTSCTTTHHHHHHHHHH-H-------TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEECcCCCCccchhHHHHHhc-C-------CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 9999999976544321 2222 0 125899999999999999999998875
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-18 Score=113.60 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=83.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHH----------hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRS----------MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG 74 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~----------~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (137)
.....+..++..+.+|||||+..+.+ ....++ +.+|++++|+|+++.++. ..+...+.. .+
T Consensus 38 ~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~---~~l~~~l~~----~~ 110 (256)
T 3iby_A 38 KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERH---LYLTSQLFE----LG 110 (256)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHH---HHHHHHHTT----SC
T ss_pred EEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhH---HHHHHHHHH----cC
Confidence 44556777888999999999977654 556667 889999999999984332 233333332 47
Q ss_pred CcEEEEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 75 IPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+|+++++||+|+.... ....+...++. +++++||++|+|++++++++.+.
T Consensus 111 ~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 111 KPVVVALNMMDIAEHRGISIDTEKLESLLGC--------SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEEEEECHHHHHHTTCEECHHHHHHHHCS--------CEEECBGGGTBSHHHHHHHHHTC
T ss_pred CCEEEEEEChhcCCcCCcHHHHHHHHHHcCC--------CEEEEECCCCCCHHHHHHHHHhh
Confidence 9999999999985432 23456666654 49999999999999999999876
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=119.52 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=87.5
Q ss_pred eeEEEeCCEEEEEEecCCc----------cccHHhHH-HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 9 MRKVTKGNVTIKLWDLGGQ----------PRFRSMWE-RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~----------~~~~~~~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
...+..++..+.+|||||+ +.+..... .+++.+|++++|+|+++..+.++. .|...+.. .++|+
T Consensus 215 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~i 289 (436)
T 2hjg_A 215 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAV 289 (436)
T ss_dssp CEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEE
T ss_pred EEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcE
Confidence 3456677889999999998 55554443 478899999999999998887765 45555543 57999
Q ss_pred EEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... .+....+..........+++++||++|+|++++|+.+.+.+.+
T Consensus 290 iiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 290 VIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp EEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 999999999765442 2222222110001123469999999999999999999987753
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=117.26 Aligned_cols=109 Identities=19% Similarity=0.242 Sum_probs=86.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
.+.+++|||||+.+|...+..+++.+|++++|+|+++..+.+....|..... .++|+++++||+|+......
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~~~~v~ 146 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSADVDRVK 146 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccCHHHHH
Confidence 4899999999999999999999999999999999999877776666655442 46899999999999765421
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.++.. ...++++||++|.|++++++++++.+-
T Consensus 147 ~el~~~lg~~-----~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 147 KQIEEVLGLD-----PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHTSCCC-----GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhhCCC-----cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 2333333321 224899999999999999999998764
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=116.51 Aligned_cols=113 Identities=18% Similarity=0.114 Sum_probs=87.3
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
..+.+|||||++++...+..+++.+|++++|+|+++..+..+...++..+... ...|+++++||+|+.+.....
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHH
Confidence 78999999999999999999999999999999999977676666666555332 235899999999997643222
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++.+.+.. .....++++++||++|+|+++++++|.+.+.
T Consensus 152 ~~i~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 152 RQIKQFTKG--TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHh--hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 23333321 1223567999999999999999999998653
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=118.71 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=86.0
Q ss_pred eeeEEEeCCEEEEEEecCC----------ccccHHhHHH-HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 8 NMRKVTKGNVTIKLWDLGG----------QPRFRSMWER-YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g----------~~~~~~~~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
....+..++..+++||||| ++.+...... +++.+|++++|+|+++..+... ..+...+.. .++|
T Consensus 234 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----~~~~ 308 (456)
T 4dcu_A 234 VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----AGKA 308 (456)
T ss_dssp TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCE
T ss_pred EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----cCCC
Confidence 3345777888999999999 6777766554 7899999999999998544322 234433332 5699
Q ss_pred EEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.... .+..+.+.........++++++||++|+|++++|+++.+.+.+
T Consensus 309 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 309 VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999765432 2222222111001123469999999999999999999987753
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=114.80 Aligned_cols=128 Identities=19% Similarity=0.201 Sum_probs=94.0
Q ss_pred CcccceeeEEEeCC-EEEEEEecCCccc----cHHhHHHHh---ccCCEEEEEEeCCC---CCChHHHHHHHHHHhcCC-
Q 032598 3 PTVGFNMRKVTKGN-VTIKLWDLGGQPR----FRSMWERYC---RAVSAIVYVVDAAD---YDNLPVSRSELHDLLSKP- 70 (137)
Q Consensus 3 pt~~~~~~~~~~~~-~~~~~~Dt~g~~~----~~~~~~~~~---~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~- 70 (137)
+|+..+...+...+ ..+.+|||||... +..+...++ +.++++++|+|+++ .++++....|...+....
T Consensus 191 tTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~ 270 (342)
T 1lnz_A 191 TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL 270 (342)
T ss_dssp SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred cccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh
Confidence 45556666676654 7999999999643 333445554 45999999999998 677888878877776642
Q ss_pred CCCCCcEEEEeeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 71 SLNGIPLLVLGNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
...++|+++|+||+|+..... ..++...+.. .++++++||++++|+++++++|.+.+.+.
T Consensus 271 ~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 271 RLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp STTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred hhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 235799999999999975321 2334444431 14589999999999999999999988653
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-16 Score=112.29 Aligned_cols=117 Identities=14% Similarity=0.210 Sum_probs=87.2
Q ss_pred ccceeeEEEeCCEEEEEEecCCcc-ccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 5 VGFNMRKVTKGNVTIKLWDLGGQP-RFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~Dt~g~~-~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
.......+..++..+.+|||||.. .+. .....+++.+|++++|+|++++.++++.. .++.+ .++
T Consensus 279 ~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~ 351 (482)
T 1xzp_A 279 RDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI------KNK 351 (482)
T ss_dssp SCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTS
T ss_pred eeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCC
Confidence 335556777889999999999987 543 23456789999999999999987776532 22222 368
Q ss_pred cEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 76 PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+++|+||+|+.......++..... ..++++++||++|+|+++++++|.+.+.
T Consensus 352 piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 352 RYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp SEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999999999976544444444332 1235899999999999999999998754
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=111.23 Aligned_cols=123 Identities=8% Similarity=-0.018 Sum_probs=90.3
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEe
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLG 81 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~ 81 (137)
+|++..+..+..++.++++|||||+++|...+...++.+|++++|+| ++ ....+...++..+.. .++|. ++++
T Consensus 46 iTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvv 119 (370)
T 2elf_A 46 TSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGIIAL 119 (370)
T ss_dssp EESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEE
T ss_pred EEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEEEE
Confidence 46677777787788899999999999999888889999999999999 54 344444555444432 35777 8889
Q ss_pred e-CCCCCCCCCH----HHHHHHhCCCCCCCCceeEEE--eeccc---CCChHHHHHHHHHhhh
Q 032598 82 N-KIDKPEALSK----EDLMEQMGLKSITDREVCCYM--ISCKN---STNIDTVIDWLVKHSK 134 (137)
Q Consensus 82 n-K~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~v~~~~~~i~~~~~ 134 (137)
| |+|+ +.... .++.+.++.. ....+++++ +||++ ++|++++++.|.+.+.
T Consensus 120 NNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 120 TRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred EeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 9 9999 43222 2233333321 123568999 99999 9999999999987653
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=110.98 Aligned_cols=104 Identities=22% Similarity=0.303 Sum_probs=80.1
Q ss_pred CEEEEEEecCCccccH------HhHHHHhc--cCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFR------SMWERYCR--AVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+..+.+|||||+.++. .+...++. .+|++++|+|+++. +....|...+.. .++|+++++||+|+.
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~~~~~~l~~----~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---ERNLYLTTQLIE----TGIPVTIALNMIDVL 120 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHH----TCSCEEEEEECHHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---HhHHHHHHHHHh----cCCCEEEEEEChhhC
Confidence 6789999999998775 56677775 59999999999874 333445555543 479999999999985
Q ss_pred CC----CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 88 EA----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 88 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. .....+...++. +++++||++|+|++++|+++.+.+.
T Consensus 121 ~~~~~~~~~~~l~~~lg~--------~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 121 DGQGKKINVDKLSYHLGV--------PVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp HHTTCCCCHHHHHHHHTS--------CEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred CcCCcHHHHHHHHHHcCC--------CEEEEEccCCCCHHHHHHHHHHHHh
Confidence 32 234556666653 4999999999999999999998764
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-17 Score=111.75 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=82.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccH----------HhHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNG 74 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~----------~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (137)
.....+...+..+.+|||||+.++. .....++ +.+|++++|+|+++.++ ...+...+.. .+
T Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~---~~~~~~~l~~----~~ 112 (274)
T 3i8s_A 40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LG 112 (274)
T ss_dssp EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHH---HHHHHHHHHH----HT
T ss_pred EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHH---HHHHHHHHHh----cC
Confidence 3344566677899999999987755 2334443 78999999999988433 3333333432 36
Q ss_pred CcEEEEeeCCCCCCCC----CHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 75 IPLLVLGNKIDKPEAL----SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+++++||+|+.+.. ....+...++. +++++||++|+|++++++++.+.+.
T Consensus 113 ~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 113 IPCIVALNMLDIAEKQNIRIEIDALSARLGC--------PVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CCEEEEEECHHHHHHTTEEECHHHHHHHHTS--------CEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred CCEEEEEECccchhhhhHHHHHHHHHHhcCC--------CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 9999999999986432 23556666654 4999999999999999999988764
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=116.46 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=86.6
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+...+..+..++..+++|||||++++...+..+++.+|++++|+|+++.... +....+..+.. .++|.++++||
T Consensus 60 Ti~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~~~----~~ip~IvviNK 134 (482)
T 1wb1_A 60 TIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKT-QTGEHMLILDH----FNIPIIVVITK 134 (482)
T ss_dssp ----CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCH-HHHHHHHHHHH----TTCCBCEEEEC
T ss_pred EEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccH-HHHHHHHHHHH----cCCCEEEEEEC
Confidence 45555666777889999999999999999999999999999999999885322 22233332221 46888999999
Q ss_pred CCCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 84 IDKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 84 ~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+|+.+..... ++.+.+... .....++++++||++|+|+++++++|.+.+
T Consensus 135 ~Dl~~~~~~~~~~~~l~~~l~~~-~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 135 SDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHS-SSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHHhhh-cccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 9997532222 222222111 011245799999999999999999999865
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=113.67 Aligned_cols=82 Identities=21% Similarity=0.179 Sum_probs=66.1
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+..++..+++|||||+.++...+..+++.+|++++|+|+++..+.+....| ..+.. .++|+++++||
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK 143 (528)
T 3tr5_A 69 SVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINK 143 (528)
T ss_dssp SSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEEC
T ss_pred eEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeC
Confidence 44455667888899999999999999999999999999999999999997666554433 33322 47899999999
Q ss_pred CCCCCCC
Q 032598 84 IDKPEAL 90 (137)
Q Consensus 84 ~D~~~~~ 90 (137)
+|+....
T Consensus 144 ~Dl~~~~ 150 (528)
T 3tr5_A 144 MDRDTRP 150 (528)
T ss_dssp TTSCCSC
T ss_pred CCCcccc
Confidence 9997653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=109.57 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=88.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccH---------HhHHHHhccCCEEEEEEeCCCCC--ChHHHHHHHHHHhcCCCC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFR---------SMWERYCRAVSAIVYVVDAADYD--NLPVSRSELHDLLSKPSL 72 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~---------~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~ 72 (137)
|.+.....+..++..+.+|||||..... .....+...+|++++|+|+++.. +++....|+..+....
T Consensus 201 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-- 278 (357)
T 2e87_A 201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-- 278 (357)
T ss_dssp SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--
T ss_pred eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--
Confidence 4445556666778899999999985421 12223345699999999998876 6777777877776532
Q ss_pred CCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 73 NGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|+++|+||+|+.......+....... ..++++++||++|+|++++++++.+.+..
T Consensus 279 ~~~piilV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 279 KDLPFLVVINKIDVADEENIKRLEKFVKE-----KGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTSCEEEEECCTTTCCHHHHHHHHHHHHH-----TTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCChHHHHHHHHHHHh-----cCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 27999999999999754333222222211 12458999999999999999999988753
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=111.79 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=75.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----H
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----K 92 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~ 92 (137)
..+.+|||||++++...+...+..+|++++|+|+++..+..+....+..+... ...|+++++||+|+.+... .
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHH
Confidence 78999999999999888877788899999999999764233333333333211 2357999999999976432 2
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.+... ....++++++||++|+|+++++++|.+.+.
T Consensus 158 ~~i~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 158 EQIKEFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3344444321 123567999999999999999999998653
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=112.33 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=84.8
Q ss_pred cceeeEEEeCCE-EEEEEecCCccccHHh-------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 6 GFNMRKVTKGNV-TIKLWDLGGQPRFRSM-------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~Dt~g~~~~~~~-------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
......+...+. .+.+|||||+.++... ...+++.+|++++|+|++. ......|+..+... ++|+
T Consensus 71 d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~pi 143 (423)
T 3qq5_A 71 DPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPF 143 (423)
T ss_dssp CCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCE
T ss_pred eeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCE
Confidence 344455555544 8999999999766433 4567899999999999832 23334566655443 7999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++|+||+|+...... +....+.. ..++.++++||++|+|++++|++|.+.+.
T Consensus 144 IvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 144 VVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp EEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred EEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 999999999876654 33344432 12346999999999999999999998874
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=100.52 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=93.1
Q ss_pred CCccccee--eEEEeCC--EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+..++ +.+.+|||+|++++...+..+++.++++++|+|.++..+++.+..|+..+... ...+.|+
T Consensus 59 ~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i 137 (191)
T 1oix_A 59 KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVI 137 (191)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcE
Confidence 47777443 4455544 56678999999999999999999999999999999877777777777665432 1246899
Q ss_pred EEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+.+.... ......+.. ..++.++++||+++.|++++|+++.+.+
T Consensus 138 ~~v~nK~Dl~~~~~~~~~~a~~l~~----~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 138 MLVGNKSDLRHLRAVPTDEARAFAE----KNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999998653321 122222211 1234689999999999999999998765
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=111.34 Aligned_cols=116 Identities=12% Similarity=0.009 Sum_probs=79.7
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
...+..+..++..+.+|||||+++|...+..+++.+|++++|+|+++.... +...++..+... .-.|+++++||+|
T Consensus 93 ~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~D 168 (434)
T 1zun_B 93 DVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMD 168 (434)
T ss_dssp CCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTT
T ss_pred EeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCc
Confidence 344555677889999999999999999999999999999999999986533 333344333221 2236999999999
Q ss_pred CCCCCC--H----HHHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 86 KPEALS--K----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 86 ~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+.+... . .++...+.........++++++||++|+|++++
T Consensus 169 l~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 169 LNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 976321 1 112222221111123578999999999999874
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=111.51 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=81.3
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCC---h---HHHHHHHHHHhcCCCCCCCc-
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN---L---PVSRSELHDLLSKPSLNGIP- 76 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p- 76 (137)
|+...+..+..++.++.+|||||+++|...+..+++.+|++++|+|+++... + .+....+..+.. .++|
T Consensus 82 Tid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~ 157 (439)
T 3j2k_7 82 TVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKH 157 (439)
T ss_pred eEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCe
Confidence 4445556677888999999999999999999999999999999999998532 1 122222222221 3566
Q ss_pred EEEEeeCCCCCCCCC----HH----HHHHHhCCCCCC-CCceeEEEeecccCCChHHHHH
Q 032598 77 LLVLGNKIDKPEALS----KE----DLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~----~~----~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
+++++||+|+..... .. ++...+....+. ...++++++||++|+|++++.+
T Consensus 158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 899999999964211 11 222222211111 1256799999999999998654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=111.80 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=82.0
Q ss_pred ceeeEEEeCCEEEEEEecCCccc---------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
..+..+..++..+++|||||.+. ++..+..+++.||++++|+|+++..+..+ .++..++.. .++|+
T Consensus 39 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ 113 (439)
T 1mky_A 39 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDT 113 (439)
T ss_dssp CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCE
T ss_pred eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCE
Confidence 44556777889999999999764 34567778999999999999988655433 233333322 46899
Q ss_pred EEEeeCCCCCCCCCHHHH-HHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSKEDL-MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++++||+|+.... .... .+..... . -.++++||++|.|++++++++.+.+.
T Consensus 114 ilv~NK~D~~~~~-~~~~~~~~~~lg-~----~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 114 ILVANKAENLREF-EREVKPELYSLG-F----GEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp EEEEESCCSHHHH-HHHTHHHHGGGS-S----CSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcccc-HHHHHHHHHhcC-C----CCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 9999999985320 1111 1211111 1 14799999999999999999988764
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-17 Score=117.01 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=77.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHH-------HHHHHHHHhcCCCCCCCc
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV-------SRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~p 76 (137)
|+...+..++..+..+.+|||||+++|...+..+++.+|++++|+|+++ .+++. ........... .-.|
T Consensus 71 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~ 146 (435)
T 1jny_A 71 TINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQ 146 (435)
T ss_dssp ------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTT
T ss_pred eeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCe
Confidence 5555666778888999999999999999999999999999999999998 44442 22222222111 2246
Q ss_pred EEEEeeCCCCCCCC-C-------HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHH
Q 032598 77 LLVLGNKIDKPEAL-S-------KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 77 ~ivv~nK~D~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
+++++||+|+.+.. . ..++...+....+....+.++++||++|+|+.+++
T Consensus 147 iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 147 LIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp CEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 89999999997631 1 12222222211112224679999999999997543
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=101.72 Aligned_cols=115 Identities=11% Similarity=0.124 Sum_probs=85.9
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHH------hHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.....+..++..+.+|||||+..+.. ....++ ..+|++++|+|+++. +....+...+... ..+|++
T Consensus 40 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~i 113 (271)
T 3k53_A 40 KKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNII 113 (271)
T ss_dssp EEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEE
T ss_pred eeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEE
Confidence 33445677888999999999987765 566666 689999999999874 3333444444432 239999
Q ss_pred EEeeCCCCCCC----CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 79 VLGNKIDKPEA----LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 79 vv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++||+|+.+. .....+...++. +++++||++|.|++++++++.+.+.+
T Consensus 114 lv~NK~Dl~~~~~~~~~~~~l~~~lg~--------~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 114 LVLNKFDLLKKKGAKIDIKKMRKELGV--------PVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp EEEECHHHHHHHTCCCCHHHHHHHHSS--------CEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred EEEEChhcCcccccHHHHHHHHHHcCC--------cEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 99999996432 234566666664 49999999999999999999987753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=113.64 Aligned_cols=111 Identities=22% Similarity=0.285 Sum_probs=75.5
Q ss_pred EEEeCCEEEEEEecCCcc--------ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 11 KVTKGNVTIKLWDLGGQP--------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~--------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
.+..++..+.+|||||++ .+...+..+++.+|++++|+|+.+..+..+ .++...+.. .++|+++++|
T Consensus 45 ~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~N 119 (436)
T 2hjg_A 45 SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVN 119 (436)
T ss_dssp ECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEE
T ss_pred EEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEE
Confidence 344557789999999985 567778888999999999999998766543 444454443 5789999999
Q ss_pred CCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 83 KIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 83 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
|+|+..... ..++. .++. -.++++||++|.|++++++++.+.+.
T Consensus 120 K~D~~~~~~~~~~~~-~lg~-------~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 120 KLDNTEMRANIYDFY-SLGF-------GEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp CCCC-----CCCSSG-GGSS-------CCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred CccCccchhhHHHHH-HcCC-------CCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 999864321 01111 1111 14899999999999999999998775
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=111.03 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=80.7
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----H
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----K 92 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~ 92 (137)
..+.+|||||+++|...+...+..+|++++|+|+++..+..+....+..+... ...|+++++||+|+.+... .
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHH
Confidence 78999999999999888888889999999999999754223333333322211 2357999999999976432 1
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.++.+.+... ....++++++||++|+|+++++++|.+.+.
T Consensus 160 ~~i~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 160 RQIKEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2333333321 123567999999999999999999988653
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=109.94 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=85.6
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKID 85 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 85 (137)
.....+..++..+.+|||||+++|...+..+++.+|++++|+|+++.... +...++..+.. .++| +++++||+|
T Consensus 65 ~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~D 139 (405)
T 2c78_A 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVD 139 (405)
T ss_dssp CEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGG
T ss_pred eeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECcc
Confidence 33445666789999999999999999999999999999999999986543 34445444432 3677 889999999
Q ss_pred CCCCCC-HH----HHHHHhCCCCCCCCceeEEEeecccCCC------------------hHHHHHHHHHhh
Q 032598 86 KPEALS-KE----DLMEQMGLKSITDREVCCYMISCKNSTN------------------IDTVIDWLVKHS 133 (137)
Q Consensus 86 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~------------------v~~~~~~i~~~~ 133 (137)
+.+... .. ++...+.........++++++||++|.| +.++++.+.+.+
T Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 140 MVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp GCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 975211 11 2222222111112246799999999987 778888877654
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=110.99 Aligned_cols=125 Identities=14% Similarity=0.055 Sum_probs=85.8
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEee
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGN 82 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~n 82 (137)
|++..+..+..++..+.+|||||+++|...+..+++.+|++++|+|+++....+. ...+..+.. .++| +++++|
T Consensus 53 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~----~~vp~iivviN 127 (397)
T 1d2e_A 53 TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ----IGVEHVVVYVN 127 (397)
T ss_dssp EEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCCEEEEEE
T ss_pred EEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCeEEEEEE
Confidence 3334444566677899999999999999989999999999999999998654332 333333322 3678 689999
Q ss_pred CCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCC----------hHHHHHHHHHhh
Q 032598 83 KIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTN----------IDTVIDWLVKHS 133 (137)
Q Consensus 83 K~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~----------v~~~~~~i~~~~ 133 (137)
|+|+.+.... .++.+.+.........++++++||++|.| ++++++.+.+.+
T Consensus 128 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 128 KADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp CGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 9999752111 12222222111222346799999999775 889999988755
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-16 Score=111.18 Aligned_cols=118 Identities=14% Similarity=0.045 Sum_probs=78.2
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCCh------HHHHHHHHHHhcCCCCCCCcE
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL------PVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|+......+..++..+.+|||||++++...+..+++.+|++++|+|+++.... .+........... ...|+
T Consensus 98 Ti~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~i 174 (483)
T 3p26_A 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNL 174 (483)
T ss_dssp SCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCE
T ss_pred ceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcE
Confidence 34445566778889999999999999999999999999999999999985432 1222222222111 22569
Q ss_pred EEEeeCCCCCCCCC--HH----HHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 78 LVLGNKIDKPEALS--KE----DLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
++++||+|+.+... .. ++...+.........+.++++||++|+|+++
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99999999976321 11 1222221111122357899999999999975
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-17 Score=118.91 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=83.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--H
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--K 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 92 (137)
++..+++|||||++.|..++..+++.+|++++|+|+++....+.... +..+.. .++|+++++||+|+.+... .
T Consensus 50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~-l~~~~~----~~vPiIVViNKiDl~~~~~~~v 124 (537)
T 3izy_P 50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVES-IQHAKD----AHVPIVLAINKCDKAEADPEKV 124 (537)
T ss_dssp CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHH-HHHHHT----TTCCEEECCBSGGGTTTSCCSS
T ss_pred CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHH-HHHHHH----cCCcEEEEEecccccccchHHH
Confidence 45689999999999999999999999999999999998765544332 232322 5689999999999975422 1
Q ss_pred HHHHHHhCCCCCC-CCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 EDLMEQMGLKSIT-DREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
......+...... ...++++++||++|+|++++++++...+.
T Consensus 125 ~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 125 KKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 2222222221111 23567999999999999999999987753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-18 Score=110.25 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=65.9
Q ss_pred CCEEEEEEecCCccccHHhHHHHhcc----CCEEEEEEeCC-CCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRA----VSAIVYVVDAA-DYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~----~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~ 86 (137)
....+.+|||||++.++..+..+++. ++++++|+|++ +.+++.....|+..+.... ...++|+++++||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 45689999999999999999999887 89999999999 8889998888888776532 1257999999999999
Q ss_pred CCCCCH
Q 032598 87 PEALSK 92 (137)
Q Consensus 87 ~~~~~~ 92 (137)
......
T Consensus 133 ~~~~~~ 138 (218)
T 1nrj_B 133 FTARPP 138 (218)
T ss_dssp TTCCCH
T ss_pred cccCCH
Confidence 876653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-16 Score=109.88 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=73.7
Q ss_pred eeEEEeCCEEEEEEecCCccccHHhHHH--------HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSMWER--------YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...+..++..+.+|||||...+...+.. +++.+|++++|+|++++.+... ..++..+ ...|+++|
T Consensus 264 ~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV 336 (462)
T 3geh_A 264 ESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILV 336 (462)
T ss_dssp HHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEE
T ss_pred EEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEE
Confidence 3456778899999999998766544433 4678999999999998766554 3344444 23699999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+||+|+....... .... . ....+++++||++|+|+++++++|.+.+..
T Consensus 337 ~NK~Dl~~~~~~~----~~~~--~-~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 337 MNKIDLVEKQLIT----SLEY--P-ENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EECTTSSCGGGST----TCCC--C-TTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCcchhhH----HHHH--h-ccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 9999997543322 1110 0 124569999999999999999999988753
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-17 Score=118.03 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=66.8
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---ChH---HHHHHHHHHhcCCCCCCCc
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP---VSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p 76 (137)
+|++..+..+..++..+.+|||||+++|...+..+++.+|++++|+|+++.. +|+ +....+.... ..++|
T Consensus 107 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp 182 (467)
T 1r5b_A 107 KTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGIN 182 (467)
T ss_dssp ------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCS
T ss_pred ceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCC
Confidence 3555566667778899999999999999999999999999999999999852 221 1112222221 14576
Q ss_pred -EEEEeeCCCCCCCC-CH-------HHHHHHhCCC-CCC-CCceeEEEeecccCCChHHHH
Q 032598 77 -LLVLGNKIDKPEAL-SK-------EDLMEQMGLK-SIT-DREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 77 -~ivv~nK~D~~~~~-~~-------~~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
+++++||+|+.... .. .++...+... .+. ...++++++||++|+|+.+++
T Consensus 183 ~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 183 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 89999999996422 11 1222222110 111 125679999999999998755
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-16 Score=114.70 Aligned_cols=116 Identities=28% Similarity=0.328 Sum_probs=80.1
Q ss_pred EEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
.+..++..+++|||||++.|..++..+++.+|++++|+|+++....+.. ..+.... ..++|+++++||+|+.+..
T Consensus 45 ~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~-e~l~~~~----~~~vPiIVviNKiDl~~~~ 119 (501)
T 1zo1_I 45 HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTI-EAIQHAK----AAQVPVVVAVNKIDKPEAD 119 (501)
T ss_dssp CCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTH-HHHHHHH----HTTCCEEEEEECSSSSTTC
T ss_pred EEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHH-HHHHHHH----hcCceEEEEEEeccccccC
Confidence 3445567899999999999999888889999999999999884322221 1222221 1468999999999997532
Q ss_pred CHHHHHHHhCCCCC----CCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 91 SKEDLMEQMGLKSI----TDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 91 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
. ..+...+..... ....++++++||++|+|++++++++...
T Consensus 120 ~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 120 P-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp C-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred H-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 1 111122211100 0123689999999999999999998754
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=109.27 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=78.0
Q ss_pred EEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-----
Q 032598 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK----- 92 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----- 92 (137)
.+++|||||+++|..++..+++.+|++++|+|+++.-..+....+ ..+. ..++|+++++||+|+......
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~----~~~vPiIVViNKiDl~~~~~~~~~~~ 145 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILR----MYRTPFVVAANKIDRIHGWRVHEGRP 145 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHH----HTTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-HHHH----HcCCeEEEEecccccccccccccCCc
Confidence 699999999999999888888999999999999985333222222 2222 157899999999999642110
Q ss_pred ---------H-----------HHHHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 ---------E-----------DLMEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 ---------~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
. ++...+..... ....++++++||++|+|++++++++...+
T Consensus 146 ~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 0 11122211000 12356899999999999999999998765
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-14 Score=104.07 Aligned_cols=80 Identities=23% Similarity=0.227 Sum_probs=61.7
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++..+++|||||+.++...+..+++.+|++++|+|+++..... ....+..+ ...++|+++++||+|+
T Consensus 72 ~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~----~~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT----RLRDTPILTFMNKLDR 146 (529)
T ss_dssp TTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH----TTTTCCEEEEEECTTS
T ss_pred eeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH----HHcCCCEEEEEcCcCC
Confidence 344567788999999999999999988899999999999999999864322 22232222 2257899999999999
Q ss_pred CCCCC
Q 032598 87 PEALS 91 (137)
Q Consensus 87 ~~~~~ 91 (137)
.....
T Consensus 147 ~~~~~ 151 (529)
T 2h5e_A 147 DIRDP 151 (529)
T ss_dssp CCSCH
T ss_pred ccccH
Confidence 76543
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=107.91 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=77.2
Q ss_pred EEeCCEEEEEEecCC--------ccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 12 VTKGNVTIKLWDLGG--------QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g--------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
+...+..+.+||||| ++.++.....+++.+|++++|+|..+..+ ....++...+.. .++|+++++||
T Consensus 66 ~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK 140 (456)
T 4dcu_A 66 AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNK 140 (456)
T ss_dssp CTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEEC
T ss_pred EEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEEC
Confidence 444577899999999 77788888899999999999999876433 334555555543 67999999999
Q ss_pred CCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 84 IDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 84 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+.+... ...+.+... .-..+++||++|.|+.++++++.+.+.
T Consensus 141 ~D~~~~~~--~~~e~~~lg-----~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 141 LDNTEMRA--NIYDFYSLG-----FGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp C-----------CCSGGGS-----SSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred ccchhhhh--hHHHHHHcC-----CCceEEeecccccchHHHHHHHHhhcc
Confidence 99864321 111111110 113679999999999999999988764
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=108.97 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=79.5
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---ChH---HHHHHHHHHhcCCCCCCCc
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NLP---VSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p 76 (137)
.|+...+..++.++..+.+|||||+++|...+..+++.+|++++|+|+++.. +++ +....+..... .++|
T Consensus 71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~ 146 (458)
T 1f60_A 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVR 146 (458)
T ss_dssp CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCC
T ss_pred cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCC
Confidence 3566666778888999999999999999999999999999999999998642 111 22222222221 3455
Q ss_pred -EEEEeeCCCCCCCCC--HH----HHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 77 -LLVLGNKIDKPEALS--KE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 77 -~ivv~nK~D~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+++++||+|+.+... .. ++...+....+....++++++||++|+|+.++
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 899999999974211 11 12221111111112457999999999998643
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.2e-15 Score=104.39 Aligned_cols=122 Identities=18% Similarity=0.071 Sum_probs=79.0
Q ss_pred eeEEEeCCEEEEEEecCCccccHHhH------------HHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSMW------------ERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
...+..++..+.+|||+|..+..... ..+++.+|++++|+|+++..+.++. ++...... .++|
T Consensus 220 ~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~ 294 (439)
T 1mky_A 220 DDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRA 294 (439)
T ss_dssp CEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCE
T ss_pred EEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCC
Confidence 34566778899999999985443321 3467889999999999987665542 22222221 5789
Q ss_pred EEEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+... ..+....+..........+++++||++|.|++++|+.+.+.+.+
T Consensus 295 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 295 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999975432 22222222110001123468999999999999999999887653
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=112.63 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=84.1
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE 88 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 88 (137)
..++.++..+++|||||+++|...+..+++.+|++++|+|+++.... +...++..+.. .++| +++++||+|+.+
T Consensus 352 v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 352 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp EEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCC
T ss_pred EEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccc
Confidence 34666789999999999999999999999999999999999986433 23344433322 3577 789999999975
Q ss_pred CCCH-----HHHHHHhCCCCCCCCceeEEEeecccC--------CChHHHHHHHHHhh
Q 032598 89 ALSK-----EDLMEQMGLKSITDREVCCYMISCKNS--------TNIDTVIDWLVKHS 133 (137)
Q Consensus 89 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~~v~~~~~~i~~~~ 133 (137)
.... .++.+.+.........++++++||++| .|+.++++.|.+.+
T Consensus 427 d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 3211 122222221112223567999999999 46889999888754
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-16 Score=113.22 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=79.0
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---Ch---HHHHHHHHHHhcCCCCCCCcE
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL---PVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p~ 77 (137)
|+......+..++.++.+|||||++++...+..+++.+|++++|+|+++.. ++ .+....+..+ .. ....|+
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~i 308 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNL 308 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEE
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeE
Confidence 444556678888899999999999999999999999999999999998731 11 1122222222 22 122459
Q ss_pred EEEeeCCCCCCCCC--H----HHHHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 78 LVLGNKIDKPEALS--K----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
++++||+|+.+... . .++...+.........++++++||++|+|+.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999999976321 1 112222211111123567999999999999865
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-13 Score=102.45 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=65.7
Q ss_pred CcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+|++.+...+..++..+++|||||+.++...+..+++.+|++++|+|+++..+.+....|.. +.. .++|+++++|
T Consensus 63 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviN 137 (691)
T 1dar_A 63 ITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFAN 137 (691)
T ss_dssp ----CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEE
T ss_pred cccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEE
Confidence 45666666778889999999999999999999999999999999999999877666554443 322 4789999999
Q ss_pred CCCCCCCC
Q 032598 83 KIDKPEAL 90 (137)
Q Consensus 83 K~D~~~~~ 90 (137)
|+|+....
T Consensus 138 KiD~~~~~ 145 (691)
T 1dar_A 138 KMDKTGAD 145 (691)
T ss_dssp CTTSTTCC
T ss_pred CCCcccCC
Confidence 99997653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=99.64 Aligned_cols=126 Identities=22% Similarity=0.221 Sum_probs=84.0
Q ss_pred CcccceeeEEEeCCEEEEEEecCCc---------cccHHhHHHHhccCCEEEEEEeCCCCC--ChHHHHHHHHHHhcCCC
Q 032598 3 PTVGFNMRKVTKGNVTIKLWDLGGQ---------PRFRSMWERYCRAVSAIVYVVDAADYD--NLPVSRSELHDLLSKPS 71 (137)
Q Consensus 3 pt~~~~~~~~~~~~~~~~~~Dt~g~---------~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~ 71 (137)
+|.+.....+...+..+.+|||+|. +.++..+. .++.+|.+++|+|++++. .......+.. ++....
T Consensus 212 ~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~-~L~~l~ 289 (364)
T 2qtf_A 212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFE-ILREIG 289 (364)
T ss_dssp --CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHH-HHHHHT
T ss_pred cccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHH-HHHHhC
Confidence 4556666778777889999999996 22344333 578899999999998864 3333322322 222222
Q ss_pred CCCCcEEEEeeCCCCCCCCCHH--HH----HHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 72 LNGIPLLVLGNKIDKPEALSKE--DL----MEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
..++|+++|+||+|+.+..... .. ...+. .....++++||++|+|+++++++|.+.+..
T Consensus 290 ~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-----~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 290 VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-----SPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-----SCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-----CCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 3578999999999997543111 11 12331 113458999999999999999999987753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=96.36 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=75.4
Q ss_pred CEEEEEEecCCcc-------------ccHHhHHHHhccCCEEE-EEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIV-YVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
...+.+|||||.. .+......+++.++.++ +|+|+++..+......+...+. ..+.|+++|+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~ 199 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVI 199 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEE
Confidence 4789999999963 45677788899998777 7999987544333333444442 2468999999
Q ss_pred eCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 82 NKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 82 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
||+|+.+... ..+..... ..........++++||++|+|++++++++.+.
T Consensus 200 NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred EccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 9999976433 22222110 01111123468899999999999999998753
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=97.28 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=76.8
Q ss_pred EEEeCCEEEEEEecCCcc-ccHHh--------HHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 11 KVTKGNVTIKLWDLGGQP-RFRSM--------WERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 11 ~~~~~~~~~~~~Dt~g~~-~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.+..++.++.+|||||.. ..... ...+++.+|++++|+|+++ +.....++...+.. .+.|+++++
T Consensus 50 i~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvl 123 (301)
T 1ega_A 50 IHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAV 123 (301)
T ss_dssp EEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEE
T ss_pred EEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEE
Confidence 456778999999999997 33221 2233677999999999977 33333444443332 578999999
Q ss_pred eCCCCCCC-CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 82 NKIDKPEA-LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 82 nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
||+|+... ....+....+... . ....++++||++|.|++++++.+.+.+.
T Consensus 124 NK~D~~~~~~~~~~~l~~l~~~-~--~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 124 NKVDNVQEKADLLPHLQFLASQ-M--NFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp ESTTTCCCHHHHHHHHHHHHTT-S--CCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ECcccCccHHHHHHHHHHHHHh-c--CcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 99999752 1122223323211 0 0125899999999999999999987653
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-16 Score=114.38 Aligned_cols=123 Identities=19% Similarity=0.131 Sum_probs=66.6
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC---Ch---HHHHHHHHHHhcCCCCCCCc-EE
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD---NL---PVSRSELHDLLSKPSLNGIP-LL 78 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-~i 78 (137)
......+..++..+.+|||||+++|...+..+++.+|++|+|+|+++.. ++ .+....+..+.. .++| ++
T Consensus 244 d~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iI 319 (592)
T 3mca_A 244 DVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIV 319 (592)
T ss_dssp ---------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEE
T ss_pred EeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEE
Confidence 3444456666789999999999999888888899999999999998642 11 111222222221 3455 89
Q ss_pred EEeeCCCCCCCCC--H----HHHHHHh-CCCCCCCCceeEEEeecccCCChH--------------HHHHHHHHh
Q 032598 79 VLGNKIDKPEALS--K----EDLMEQM-GLKSITDREVCCYMISCKNSTNID--------------TVIDWLVKH 132 (137)
Q Consensus 79 vv~nK~D~~~~~~--~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~~~~~i~~~ 132 (137)
+++||+|+.+... . .++...+ ....+....++++++||++|+|+. .|++.|...
T Consensus 320 vviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~ 394 (592)
T 3mca_A 320 VSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL 394 (592)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS
T ss_pred EEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhh
Confidence 9999999975221 1 2333434 322333346789999999999998 677777654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-15 Score=95.49 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=67.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhcc----CCEEEEEEeCC-CCCChHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRA----VSAIVYVVDAA-DYDNLPVSRSELHDLLSKP---SLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~----~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~ 86 (137)
.+..+.+|||||++.+...+..+++. +|++++|+|++ +..++.....|+..+.... ...++|+++++||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 46789999999999988888888776 89999999999 7777887777777776432 1257999999999999
Q ss_pred CCCCCHHHHHHHh
Q 032598 87 PEALSKEDLMEQM 99 (137)
Q Consensus 87 ~~~~~~~~~~~~~ 99 (137)
.+.....++...+
T Consensus 169 ~~~~~~~~~~~~l 181 (193)
T 2ged_A 169 FTARPPSKIKDAL 181 (193)
T ss_dssp TTCCCHHHHHHHH
T ss_pred cCCCCHHHHHHHH
Confidence 8877765555444
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=97.98 Aligned_cols=81 Identities=20% Similarity=0.119 Sum_probs=61.5
Q ss_pred cccceeeEEEeCC-------EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 4 TVGFNMRKVTKGN-------VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 4 t~~~~~~~~~~~~-------~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
|+......+..++ +.+++|||||+.+|...+..+++.+|++++|+|+++....+....| .... ..++|
T Consensus 62 Ti~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~----~~~ip 136 (704)
T 2rdo_7 62 TITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN----KYKVP 136 (704)
T ss_pred eeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH----HcCCC
Confidence 3444444555555 8999999999999999999999999999999999987554433333 2222 24689
Q ss_pred EEEEeeCCCCCCC
Q 032598 77 LLVLGNKIDKPEA 89 (137)
Q Consensus 77 ~ivv~nK~D~~~~ 89 (137)
+++++||+|+...
T Consensus 137 ~ilviNKiD~~~~ 149 (704)
T 2rdo_7 137 RIAFVNKMDRMGA 149 (704)
T ss_pred EEEEEeCCCcccc
Confidence 9999999998764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.8e-13 Score=98.39 Aligned_cols=76 Identities=18% Similarity=0.113 Sum_probs=60.4
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+..++..+++|||||+.++...+..+++.+|++++|+|+++....... .++..+.. .++|+++++||+|+
T Consensus 64 ~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 64 TGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDK 138 (665)
T ss_dssp CEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGG
T ss_pred ecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCch
Confidence 34445677899999999999999999999999999999999998876443332 33333332 46899999999999
Q ss_pred C
Q 032598 87 P 87 (137)
Q Consensus 87 ~ 87 (137)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 7
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.1e-14 Score=93.03 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=77.7
Q ss_pred cceeeEEEeCCEEEEEEecCCccccH-----------HhHHHHhccCCEEEEEEeCCCCCChH-HHHHHHHHHhcCCCCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMWERYCRAVSAIVYVVDAADYDNLP-VSRSELHDLLSKPSLN 73 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~-----------~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~ 73 (137)
......+..++.++.+|||||+..+. .....+++.+|++++|+|++...... ....++...... ..
T Consensus 60 ~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~ 137 (260)
T 2xtp_A 60 TCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DA 137 (260)
T ss_dssp SCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GG
T ss_pred eeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hh
Confidence 34445667788999999999986542 22334678899999999998632222 122333333221 11
Q ss_pred CCcEEEEee-CCCCCCCCCHHH------------HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGN-KIDKPEALSKED------------LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~n-K~D~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
..|.++++| |+|+... .... +...++.... .+..+++||++|.|++++|++|.+.+.+
T Consensus 138 ~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 138 MGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEE---EecCcccccccHHHHHHHHHHHHHHHHh
Confidence 356666666 9999753 3332 3333332100 0111789999999999999999988764
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=94.69 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=65.3
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
||.-....+.+++..++++||||+.+|.......++-+|++|+|+|+.+.-..+...-| ..+.. .++|.++++||
T Consensus 87 TI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK 161 (548)
T 3vqt_A 87 SVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNK 161 (548)
T ss_dssp -CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEEC
T ss_pred cEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEec
Confidence 34445556889999999999999999999999999999999999999986554444344 33332 57999999999
Q ss_pred CCCCCCC
Q 032598 84 IDKPEAL 90 (137)
Q Consensus 84 ~D~~~~~ 90 (137)
+|.....
T Consensus 162 ~Dr~~ad 168 (548)
T 3vqt_A 162 MDREALH 168 (548)
T ss_dssp TTSCCCC
T ss_pred ccchhcc
Confidence 9987654
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=96.57 Aligned_cols=82 Identities=23% Similarity=0.208 Sum_probs=64.9
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+..++..+++|||||+.++...+..+++.+|++++|+|+++..+.+....|. .+.. .++|+++++||
T Consensus 62 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK 136 (693)
T 2xex_A 62 TITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNK 136 (693)
T ss_dssp --CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEEC
T ss_pred eEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEEC
Confidence 455555667788999999999999999999999999999999999999876666554443 2322 46899999999
Q ss_pred CCCCCCC
Q 032598 84 IDKPEAL 90 (137)
Q Consensus 84 ~D~~~~~ 90 (137)
+|+....
T Consensus 137 ~Dl~~~~ 143 (693)
T 2xex_A 137 MDKLGAN 143 (693)
T ss_dssp TTSTTCC
T ss_pred CCccccc
Confidence 9997653
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=93.27 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCcccceeeEEE----eCCEEEEEEecCCc-------cccHHhH-------HHHhcc-------------CCEEEEEEeC
Q 032598 2 IPTVGFNMRKVT----KGNVTIKLWDLGGQ-------PRFRSMW-------ERYCRA-------------VSAIVYVVDA 50 (137)
Q Consensus 2 ~pt~~~~~~~~~----~~~~~~~~~Dt~g~-------~~~~~~~-------~~~~~~-------------~~~~i~v~d~ 50 (137)
.||++....... +..+++++|||||. +.+..+. ..+++. +|+++++++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 467776665433 23369999999997 3344444 445443 7799999987
Q ss_pred CCCCChHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHH
Q 032598 51 ADYDNLPVSR-SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTV 125 (137)
Q Consensus 51 ~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 125 (137)
+... +.... .++..+.. ++|+++|+||+|+........ +.+.+.. .++.++++||++++|++++
T Consensus 126 ~~~~-~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~-----~~i~v~~~sa~~~~~~~~l 194 (274)
T 3t5d_A 126 SGHG-LKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQE-----HKIKIYEFPETDDEEENKL 194 (274)
T ss_dssp CCSS-CCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHH-----TTCCCCCC-----------
T ss_pred CCCC-CCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHH-----cCCeEEcCCCCCChhHHHH
Confidence 7532 22222 23333321 699999999999865433322 2222221 2345888999999999999
Q ss_pred HHHHHHhh
Q 032598 126 IDWLVKHS 133 (137)
Q Consensus 126 ~~~i~~~~ 133 (137)
+++|.+.+
T Consensus 195 ~~~l~~~~ 202 (274)
T 3t5d_A 195 VKKIKDRL 202 (274)
T ss_dssp CHHHHHTC
T ss_pred HHHHhcCC
Confidence 99998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-14 Score=95.55 Aligned_cols=96 Identities=17% Similarity=0.085 Sum_probs=72.1
Q ss_pred ccccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHHhCCC
Q 032598 27 QPRFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLK 102 (137)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~ 102 (137)
++++..+.+.+++++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+.+... ..+....+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5677777777899999999999999885 88888888876643 5799999999999975431 1222222211
Q ss_pred CCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 103 SITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 103 ~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
.+..++++||++|+|+++++..+..
T Consensus 141 ----~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 141 ----AGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ----TTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ----CCCeEEEEECCCCCCHHHHHhhccC
Confidence 1236999999999999999987654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-14 Score=98.28 Aligned_cols=121 Identities=16% Similarity=0.228 Sum_probs=58.9
Q ss_pred CcccceeeEE--EeCC--EEEEEEecCCc-------cccHHhHH-------HHhccCC-------------EEEEEEeCC
Q 032598 3 PTVGFNMRKV--TKGN--VTIKLWDLGGQ-------PRFRSMWE-------RYCRAVS-------------AIVYVVDAA 51 (137)
Q Consensus 3 pt~~~~~~~~--~~~~--~~~~~~Dt~g~-------~~~~~~~~-------~~~~~~~-------------~~i~v~d~~ 51 (137)
||++.....+ ...+ ..+++|||||. +.+..++. .+++.++ +++++++.+
T Consensus 77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~ 156 (361)
T 2qag_A 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156 (361)
T ss_dssp -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence 4555444332 2233 58999999999 66666665 6666544 345555432
Q ss_pred CCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHHH
Q 032598 52 DYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 52 ~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
..++..... ++..+ ..++|+++|+||+|+........ +..... ..++.++++||++|.| ++.|
T Consensus 157 -~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~-----~~~i~~~~~Sa~~~~~-~e~~ 224 (361)
T 2qag_A 157 -GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDEIE-----EHNIKIYHLPDAESDE-DEDF 224 (361)
T ss_dssp -SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTT-----CC-CCSCCCC----------C
T ss_pred -CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH-----HCCCCEEeCCCcCCCc-chhH
Confidence 345555543 33332 15789999999999976443322 222222 2245789999999999 8888
Q ss_pred HHHHHhhhh
Q 032598 127 DWLVKHSKS 135 (137)
Q Consensus 127 ~~i~~~~~~ 135 (137)
.++.+.+.+
T Consensus 225 ~~l~~~i~~ 233 (361)
T 2qag_A 225 KEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777653
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=97.15 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=79.1
Q ss_pred EEEEEEecCCccc---cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC---
Q 032598 17 VTIKLWDLGGQPR---FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL--- 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--- 90 (137)
..+.+|||||... .......+++.+|++++|+|+++..+..+...|...+. ..+.|+++|+||+|+....
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~----~~~~~iiiVlNK~Dl~~~~~~~ 249 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK----GRGLTVFFLVNAWDQVRESLID 249 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT----TSCCCEEEEEECGGGGGGGCSS
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH----hhCCCEEEEEECcccccccccC
Confidence 3689999999754 44566778999999999999998877766554443332 1367899999999986432
Q ss_pred --CHH-------HHH----HHhCCC----CCCCCceeEEEeecc--------------cCCChHHHHHHHHHhhhh
Q 032598 91 --SKE-------DLM----EQMGLK----SITDREVCCYMISCK--------------NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 91 --~~~-------~~~----~~~~~~----~~~~~~~~~~~~Sa~--------------~~~~v~~~~~~i~~~~~~ 135 (137)
... .+. ..+... ........++++||+ +|.|+++++..+.+.+..
T Consensus 250 ~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 250 PDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 100 111 112110 000123468999999 999999999999887753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-12 Score=89.10 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=84.2
Q ss_pred cccceeeEEEeCC-EEEEEEecCCcccc----H---HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCC
Q 032598 4 TVGFNMRKVTKGN-VTIKLWDLGGQPRF----R---SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNG 74 (137)
Q Consensus 4 t~~~~~~~~~~~~-~~~~~~Dt~g~~~~----~---~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~ 74 (137)
|+..+...+...+ ..+.+||+||.... . ......++.++.+++++|++ ..++..+..+..++..... ...
T Consensus 191 Tl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~ 269 (416)
T 1udx_A 191 TLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLR 269 (416)
T ss_dssp SSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHH
T ss_pred eecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhc
Confidence 3444455565554 78999999997431 1 11222356799999999998 5556665555554443211 135
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 75 IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
.|.++++||+|+........+...+.. ..+.++.+||++++|+++++++|.+.+.+.
T Consensus 270 ~P~ILVlNKlDl~~~~~~~~l~~~l~~-----~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 270 RPSLVALNKVDLLEEEAVKALADALAR-----EGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHT-----TTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred CCEEEEEECCChhhHHHHHHHHHHHHh-----cCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 889999999999764222333333321 134599999999999999999999988653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=81.64 Aligned_cols=119 Identities=12% Similarity=0.095 Sum_probs=72.8
Q ss_pred ceeeEEEeCCEEEEEEecCCcc-----------ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC-CCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQP-----------RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP-SLNG 74 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~ 74 (137)
.....+...+..+.+|||||.. .+...+..+++.++++++|+|++.....+ ..++..+.... ....
T Consensus 68 ~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~ 145 (239)
T 3lxx_A 68 CEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERAR 145 (239)
T ss_dssp CEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHG
T ss_pred EEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhcc
Confidence 4455677788999999999943 34444455567789999999998654422 23333332210 0123
Q ss_pred CcEEEEeeCCCCCCCCCHH-----------HHHHHhCCCCCCCCceeEEEeecc-----cCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEALSKE-----------DLMEQMGLKSITDREVCCYMISCK-----NSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~-----~~~~v~~~~~~i~~~~~~ 135 (137)
.|+++++||+|+....... ++.+.++. .++.+++. ++.++.+++..+.+.+.+
T Consensus 146 ~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~--------~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD--------RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GGEEEEEECGGGC------------CHHHHHHHHHHSS--------SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--------EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 6899999999986543322 23333332 25555554 336899999998887754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=84.71 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCEEEEEEecCCccc-------------cHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 15 GNVTIKLWDLGGQPR-------------FRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.+.++.+|||||..+ +......+++.+|++++|+|+++.. ...........+ . ..+.|+++|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~---~~~~~~i~v 204 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D---PEGKRTIGV 204 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C---SSCSSEEEE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-C---CCCCcEEEE
Confidence 457899999999753 4567777899999999999975432 111111222222 2 256899999
Q ss_pred eeCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeeccc---CCChHHHHHHHHHhhhh
Q 032598 81 GNKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKN---STNIDTVIDWLVKHSKS 135 (137)
Q Consensus 81 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~i~~~~~~ 135 (137)
+||+|+..... ..+..... .........++..+||.+ +.|+.+++..+.+.+..
T Consensus 205 ~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 205 ITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99999975543 12222210 011101122344456666 78999999998877643
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.2e-12 Score=94.41 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=87.3
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.....+.+++..++++||||+.+|.......++-+|++|+|+|+.+.-..+...-| ..+.. .++|.++++||+|.
T Consensus 57 s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~----~~lp~i~~INKmDr 131 (638)
T 3j25_A 57 TGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRK----MGIPTIFFINKIDQ 131 (638)
T ss_dssp CCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHH----HTCSCEECCEECCS
T ss_pred eeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCeEEEEecccc
Confidence 33445677889999999999999999999999999999999999986433332223 33322 46899999999998
Q ss_pred CCCCCH---HHHHHHhCCCCC--------------------------------------------------------CCC
Q 032598 87 PEALSK---EDLMEQMGLKSI--------------------------------------------------------TDR 107 (137)
Q Consensus 87 ~~~~~~---~~~~~~~~~~~~--------------------------------------------------------~~~ 107 (137)
...+.. .++.+.++.... ...
T Consensus 132 ~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (638)
T 3j25_A 132 NGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCS 211 (638)
T ss_dssp SSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccc
Confidence 765432 334443331100 001
Q ss_pred ceeEEEeecccCCChHHHHHHHHHhh
Q 032598 108 EVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 108 ~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
-.+++..||+++.|++.+++.+.+.+
T Consensus 212 ~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 212 LFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred cccccccccccCCCchhHhhhhhccc
Confidence 23567789999999999999998754
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.8e-13 Score=88.46 Aligned_cols=119 Identities=16% Similarity=0.000 Sum_probs=71.2
Q ss_pred CEEEEEEecCCccccHHhHH------HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWE------RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
++.+.+|||||+........ ..+.. +.+++++|+....+..................++|+++++||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 35799999999976543211 23455 899999998765444433222111111001135899999999998754
Q ss_pred CCHHHHHHHhCC-------------------------CCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 90 LSKEDLMEQMGL-------------------------KSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 90 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
....++...+.. .........++++||++|+|+++++++|.+.+..
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 322111111100 0000012358999999999999999999987753
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=77.84 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=71.0
Q ss_pred EEEEEecCCccc----------cHHhHHHHh---ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGGQPR----------FRSMWERYC---RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g~~~----------~~~~~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.+.+|||||... ++.....++ +.++++++++|+++..+.... .+..... ..++|+++++||+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~---~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV---DSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH---HTTCCEEEEEECG
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH---HcCCCeEEEEecc
Confidence 678999999742 333444455 468999999999987654321 1111211 1468999999999
Q ss_pred CCCCCCCH----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 85 DKPEALSK----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 85 D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+...... ..+...+... ...+.++++||+++.|+++++++|.+.+.+
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAF---NGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGG---CSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCchhHHHHHHHHHHHHHhc---CCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 98653211 1222222111 123568999999999999999999887643
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8.5e-12 Score=86.89 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=71.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE- 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 93 (137)
.+..+.+|||||.... ....++.+|.+++|+|+...+....+. ....++|.++|+||+|+.+.....
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 5789999999996432 223458899999999987655432211 112357999999999986432222
Q ss_pred ---HHHHHhCCCC--CCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 ---DLMEQMGLKS--ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 ---~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++...+.... ......+++++||++|+|+++++++|.+.+.
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 2222221100 0011346999999999999999999988764
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=84.43 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=69.0
Q ss_pred CEEEEEEecCCcc-------------ccHHhHHHHhccCCEEEEE-EeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIVYV-VDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
..++.+|||||.. .+..+...|++.++.++++ +|++..........+...+. ..+.|+++|+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~ 204 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVI 204 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEe
Confidence 5789999999963 4556777888777666554 45543222122222333332 2578999999
Q ss_pred eCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 82 NKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 82 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
||+|+.+... ........ ..........++++||++|.|++++++++.+
T Consensus 205 NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9999975433 22222211 1111112245788999999999999998876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-11 Score=84.03 Aligned_cols=107 Identities=16% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCEEEEEEecCCcccc-------------HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 15 GNVTIKLWDLGGQPRF-------------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
....+++|||||..++ ..+...+++.++++++|+|+.+.+.... .++..+. .....+.|+++|+
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~~~~l~~-~~~~~~~~~i~V~ 210 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISR-EVDPSGDRTFGVL 210 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--HHHHHHH-HSCTTCTTEEEEE
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--HHHHHHH-HhcccCCCEEEEE
Confidence 3568999999998776 6788889999999999998876443321 2222222 2223568999999
Q ss_pred eCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHH
Q 032598 82 NKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 82 nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
||+|+...... .+....+. ...+..|+++|+.++.++++.+..
T Consensus 211 nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 211 TKIDLMDKGTDAVEILEGRS----FKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp ECGGGCCTTCCSHHHHTTSS----SCCSSCCEEECCCCHHHHHTTCCH
T ss_pred eCCccCCCcccHHHHHcCcc----ccccCCeEEEEECChHHhccCCCH
Confidence 99999754332 22222211 122456899999988887765444
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-11 Score=90.54 Aligned_cols=67 Identities=24% Similarity=0.234 Sum_probs=57.6
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+..+++|||||+.+|...+..+++.+|++++|+|+++..+++....|.... . .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 689999999999999999999999999999999999987777655554433 2 468999999999986
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-12 Score=87.92 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=66.6
Q ss_pred CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHH-------H
Q 032598 25 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDL-------M 96 (137)
Q Consensus 25 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~-------~ 96 (137)
...++|++.+.++.+.++++++|+|++++. ..|...+.+. ..++|+++|+||+|+..... ...+ .
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA 126 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHH
Confidence 356889999999999999999999998742 1232222221 13789999999999975432 2222 1
Q ss_pred HHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 97 EQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...+. +...++.+||++|+|++++++.+.+..
T Consensus 127 ~~~g~-----~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGL-----KPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTC-----CCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCC-----CcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 22221 112589999999999999999997654
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-10 Score=82.97 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=56.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
++.++++||||+.+|.......++-+|++|+|+|+.+.-..+...-|.... + .++|.++++||+|....
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~-~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN-K----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-H----HTCCEEEEEECSSSTTC
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH-H----cCCCeEEEEccccccCc
Confidence 689999999999999999999999999999999999865544443343333 2 46999999999998654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-11 Score=86.18 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHHH----h
Q 032598 25 GGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS-KEDLMEQ----M 99 (137)
Q Consensus 25 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~----~ 99 (137)
..+++|++.+.++.+.++++++|+|++++.+ .|...+... ..+.|+++|+||+|+..... ...+.+. +
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPRSVKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHH
Confidence 4588999999999999999999999998653 111111111 13689999999999975432 2222111 1
Q ss_pred CCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 100 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
... +.+...++.+||++|.|++++++.+.+...
T Consensus 129 ~~~--g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EEL--GLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTT--TCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHc--CCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 111 111125899999999999999999976553
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-11 Score=83.50 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=67.4
Q ss_pred eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH
Q 032598 14 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE 93 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 93 (137)
.+++.+.++||||....... ..+.+|++++|+|++..+.++.+.. . ..++|.++|+||+|+.+.....
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~------~~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---G------LMEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---H------HHHHCSEEEECCCCTTCHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---h------hhcccCEEEEECCCCCChHHHH
Confidence 34678999999997654332 4688999999999976432211100 0 0246889999999997532222
Q ss_pred ----HHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 94 ----DLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 94 ----~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++...+..... ......++++||++|+|+++++++|.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22221111000 011246899999999999999999987653
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=77.09 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=55.2
Q ss_pred cceeeEEEeCCEEEEEEecCCccccHHhHHHHhc---------cCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCC-CCC
Q 032598 6 GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---------AVSAIVYVVDAADYDNLPVS-RSELHDLLSKPS-LNG 74 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~---------~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~ 74 (137)
......+..++..+.+|||||+.++......+++ .+|++++|++++... +... ..++..+..... ...
T Consensus 73 ~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~ 151 (262)
T 3def_A 73 RPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIW 151 (262)
T ss_dssp CCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGG
T ss_pred eeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhh
Confidence 3445567788999999999999876544433332 789999999987754 4333 245554443211 112
Q ss_pred CcEEEEeeCCCCCC
Q 032598 75 IPLLVLGNKIDKPE 88 (137)
Q Consensus 75 ~p~ivv~nK~D~~~ 88 (137)
.|+++++||+|+..
T Consensus 152 ~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 152 CKTLLVLTHAQFSP 165 (262)
T ss_dssp GGEEEEEECTTCCC
T ss_pred cCEEEEEeCcccCC
Confidence 48999999999853
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-10 Score=77.49 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=68.1
Q ss_pred EEecCCcc-ccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHh
Q 032598 21 LWDLGGQP-RFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQM 99 (137)
Q Consensus 21 ~~Dt~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 99 (137)
+-..||+. +........++.+|+++.|+|+.++.+... ..+..++ .++|.++++||+|+.+........+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44578886 455666778999999999999999866542 1222232 568999999999997632223334444
Q ss_pred CCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 100 GLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 100 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. .+.+++.+||+++.|++++++.+.+.+.
T Consensus 76 ~~-----~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 EN-----QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HT-----TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred Hh-----cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 21 1235899999999999999998877654
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=82.69 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=73.0
Q ss_pred CCEEEEEEecCCccc-------------cHHhHHHHh-ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 15 GNVTIKLWDLGGQPR-------------FRSMWERYC-RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...++.++||||... ...+...++ +.+|.+++|+|++......+.......+. ..+.|+++|
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlV 223 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGV 223 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEE
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEE
Confidence 345799999999543 334555565 46899999999987544443323333332 246899999
Q ss_pred eeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||+|+.+.... ..+.. -...........++.+||++|.|++++++.+.+
T Consensus 224 lNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 224 ITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp EECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred EeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 999999755332 22222 111111112345788999999999999999886
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=75.60 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=67.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA--LSK 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~ 92 (137)
.+..+.+|||+|+..... .+...++.+++|+|+++.... ...+.. . .+.|.++++||+|+.+. ...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~-~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPE-I------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHH-H------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhh-h------hhcCCEEEEecccCCcchhhHH
Confidence 356789999999521111 111357889999999875431 111111 1 24788999999998543 233
Q ss_pred HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 93 EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.+....+... ...++++++||++|+|++++++++.+.+.+
T Consensus 175 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 175 EKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 4333333210 123569999999999999999999987754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=75.86 Aligned_cols=107 Identities=16% Similarity=0.096 Sum_probs=65.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--- 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--- 91 (137)
.+..+.++||+|.... .....+.+|.+++|+|++.....+.+. ..+ .+.|.++++||+|+.+...
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCCchhHHH
Confidence 5678999999996422 234467899999999998754322111 111 2468899999999864211
Q ss_pred -HHHHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 92 -KEDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 92 -~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
...+...+..... .....+++++||++|+|+++++++|.+.+
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 1223332222100 01134689999999999999999998765
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.6e-09 Score=70.01 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=51.4
Q ss_pred eEEEeCCEEEEEEecCCccccHH-------hHHHH--hccCCEEEEEEeCCCCCChHHH-HHHHHHHhcCCC-CCCCcEE
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRS-------MWERY--CRAVSAIVYVVDAADYDNLPVS-RSELHDLLSKPS-LNGIPLL 78 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~-------~~~~~--~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~p~i 78 (137)
..+..++..+.+|||||..++.. .+..+ .+.+|++++|+|++.. ++... ..++..+..... ....|++
T Consensus 80 ~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~ii 158 (270)
T 1h65_A 80 VSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAI 158 (270)
T ss_dssp EEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEE
T ss_pred EEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEE
Confidence 34667889999999999976532 12222 2479999999998763 34332 245444433211 1126999
Q ss_pred EEeeCCCCCCC
Q 032598 79 VLGNKIDKPEA 89 (137)
Q Consensus 79 vv~nK~D~~~~ 89 (137)
+|+||+|+...
T Consensus 159 vV~nK~Dl~~~ 169 (270)
T 1h65_A 159 VALTHAQFSPP 169 (270)
T ss_dssp EEEECCSCCCG
T ss_pred EEEECcccCCc
Confidence 99999998654
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-10 Score=81.44 Aligned_cols=38 Identities=29% Similarity=0.412 Sum_probs=23.5
Q ss_pred CEEEEEEecCCcccc----HHhHHHH---hccCCEEEEEEeCCCC
Q 032598 16 NVTIKLWDLGGQPRF----RSMWERY---CRAVSAIVYVVDAADY 53 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~----~~~~~~~---~~~~~~~i~v~d~~~~ 53 (137)
..++.+|||||..+. +.+...+ ++.+|++++|+|+++.
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 368999999998643 2333333 5889999999999875
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-09 Score=77.92 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=55.5
Q ss_pred EEEEEecCCccc-----------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 18 TIKLWDLGGQPR-----------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 18 ~~~~~Dt~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
++.+|||||... +......+++.+|++++|+|+++.........++..+.. .+.|+++|+||+|+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCc
Confidence 689999999865 556777889999999999999886555555555555432 46899999999999
Q ss_pred CCCCCHHHH
Q 032598 87 PEALSKEDL 95 (137)
Q Consensus 87 ~~~~~~~~~ 95 (137)
.........
T Consensus 231 ~~~~el~~~ 239 (550)
T 2qpt_A 231 VETQQLMRV 239 (550)
T ss_dssp SCHHHHHHH
T ss_pred cCHHHHHHH
Confidence 765444333
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.6e-10 Score=75.76 Aligned_cols=108 Identities=14% Similarity=0.221 Sum_probs=55.1
Q ss_pred CEEEEEEecCCc-------cccHHhHH-------HHhccC-------------CEEEEEEeCCCCCChHHHH-HHHHHHh
Q 032598 16 NVTIKLWDLGGQ-------PRFRSMWE-------RYCRAV-------------SAIVYVVDAADYDNLPVSR-SELHDLL 67 (137)
Q Consensus 16 ~~~~~~~Dt~g~-------~~~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~-~~~~~~~ 67 (137)
...+++|||+|. +.+..... .+++.+ ++++++.+++. .+++... ..+..+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l- 152 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI- 152 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-
Confidence 478999999998 55555554 454433 33555555543 2333332 222222
Q ss_pred cCCCCCCCcEEEEeeCCCCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 68 SKPSLNGIPLLVLGNKIDKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 68 ~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
....|+++|+||.|+....... ++.+.... .++.++++||+++ |++++|.++.+.+.+
T Consensus 153 ----~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 153 ----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEE-----HNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp ----TTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHH-----TTCCCCCCC----------CHHHHHHHHT
T ss_pred ----HhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHH-----cCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 1457899999999997542221 11121111 1345899999999 999999999988754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=64.73 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=28.9
Q ss_pred EEEEEEecCCccccHH-------hHHHHhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRFRS-------MWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~ 52 (137)
..+++|||||+.++.+ ....+++.+|++++|+|+++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 6899999999977642 22345789999999999986
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-08 Score=68.51 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=59.5
Q ss_pred cCCccc-cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCC
Q 032598 24 LGGQPR-FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLK 102 (137)
Q Consensus 24 t~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 102 (137)
.||+.. ........++.+|.++.|+|+.++.+.... .+. + . ++|.++++||+|+.+........+.+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 477753 334566778999999999999987654321 111 1 1 79999999999997643223333333211
Q ss_pred CCCCCceeEEEeecccCCChHHHHHHHHH
Q 032598 103 SITDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 103 ~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+.++ .+||+++.|++++++.+.+
T Consensus 75 -----g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 75 -----GKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -----TCCE-EECCTTSCHHHHHHHHCCC
T ss_pred -----CCeE-EEECCCCcCHHHHHHHHHH
Confidence 2246 9999999999999887654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=64.74 Aligned_cols=108 Identities=10% Similarity=0.091 Sum_probs=65.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS--- 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--- 91 (137)
.+..+.++||+|...-.. .....+|.+++|+|+...+..+. +.. ...++|.++++||+|+.....
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~-------i~~--~i~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG-------IKK--GIFELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC-------------CCT--THHHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH-------HHH--HHhccccEEEEEchhccCchhHHH
Confidence 578999999999754332 23578999999999864332111 100 001345688889999754221
Q ss_pred --HHHHHHHhCCCCC--CCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 92 --KEDLMEQMGLKSI--TDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 92 --~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...+...+..... .....+++.+||++++|++++++.|.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1223332321110 001235888999999999999999987653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-08 Score=72.60 Aligned_cols=105 Identities=11% Similarity=0.198 Sum_probs=43.3
Q ss_pred EEEEEEecCCcccc-------HHh-------HHHH-----------hccCCE--EEEEEeCCCCCChHHHH-HHHHHHhc
Q 032598 17 VTIKLWDLGGQPRF-------RSM-------WERY-----------CRAVSA--IVYVVDAADYDNLPVSR-SELHDLLS 68 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~-------~~~-------~~~~-----------~~~~~~--~i~v~d~~~~~~~~~~~-~~~~~~~~ 68 (137)
..+++|||+|.... ..+ ...+ ++.+++ ++++.+++. .+++... .++..+.
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~- 165 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH- 165 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-
Confidence 57999999998653 111 1122 233443 444444431 2344433 3555442
Q ss_pred CCCCCCCcEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 69 KPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 69 ~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
.++|+++|+||+|+........ +...+.. .++.++++||+++++++++|..+.+.
T Consensus 166 ----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~-----~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 166 ----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQE-----HKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp ----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHH-----HTCCCCCCC-----------------
T ss_pred ----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHH-----cCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 3689999999999875433222 1111111 13458999999999999988877654
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=5.1e-07 Score=63.27 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=53.7
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHH-------hHHHHhccCCEEEEEEeCCCCCC-hHHHHHHHHHHhcCCCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-------MWERYCRAVSAIVYVVDAADYDN-LPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~ 73 (137)
..|+..+...+...+.+++++||||.....+ .....++.||++++|+|++++.. .+.+...+.... ....
T Consensus 104 ftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~ 181 (376)
T 4a9a_A 104 FTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVG--IRLN 181 (376)
T ss_dssp SSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTT--EEET
T ss_pred CceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhh--Hhhc
Confidence 3566677778889999999999999743321 22234678999999999987421 122222222221 1224
Q ss_pred CCcEEEEeeCCCCC
Q 032598 74 GIPLLVLGNKIDKP 87 (137)
Q Consensus 74 ~~p~ivv~nK~D~~ 87 (137)
..|.+++.||+|..
T Consensus 182 ~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 182 KTPPDILIKKKEKG 195 (376)
T ss_dssp CCCCCEEEEECSSS
T ss_pred cCChhhhhhHhhhh
Confidence 56778888888864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6.8e-06 Score=57.47 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=28.9
Q ss_pred CEEEEEEecCCccccH-------HhHHHHhccCCEEEEEEeCCC
Q 032598 16 NVTIKLWDLGGQPRFR-------SMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~-------~~~~~~~~~~~~~i~v~d~~~ 52 (137)
+..+++|||||...+. ......++.+|++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4689999999986542 223345899999999999986
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-07 Score=60.89 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=42.6
Q ss_pred CCcEEEEeeCCCCCCC--CCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 74 GIPLLVLGNKIDKPEA--LSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
+.|.++++||+|+.+. ....+....+... ...++++++||++|+|++++|+++.+.+.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 226 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHCC
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhhC
Confidence 3677999999998643 2333333322210 12346999999999999999999998887643
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-07 Score=62.04 Aligned_cols=85 Identities=18% Similarity=0.093 Sum_probs=56.2
Q ss_pred HHHhccCCEEEEEEeCCCCCC-hHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHHHhCCCCCCCCce
Q 032598 35 ERYCRAVSAIVYVVDAADYDN-LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS----KEDLMEQMGLKSITDREV 109 (137)
Q Consensus 35 ~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~ 109 (137)
+..+.++|.+++|+|+.++.. ...+.+++.... ..++|.++++||+|+.+... ...+...+... +.
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-----g~ 151 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-----GY 151 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-----TC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-----CC
Confidence 345788999999999997643 333444433222 25789999999999986532 23334433211 12
Q ss_pred eEEEeecccCCChHHHHHH
Q 032598 110 CCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 110 ~~~~~Sa~~~~~v~~~~~~ 128 (137)
.++.+||.++.|+++++..
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 4899999999998876643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.12 E-value=9.1e-06 Score=56.60 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=51.8
Q ss_pred hccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHHHhCCCCCCCCceeEEE
Q 032598 38 CRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALS---KEDLMEQMGLKSITDREVCCYM 113 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 113 (137)
..++|.+++|.+. ++. +...+.+++-... ..++|.++|+||+|+.+... .......+... +..++.
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~-----G~~v~~ 197 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI-----GYRVLM 197 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTT-----TCCEEE
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhC-----CCcEEE
Confidence 5779999987654 443 3333434432221 24688899999999976432 12233333222 234899
Q ss_pred eecccCCChHHHHHHH
Q 032598 114 ISCKNSTNIDTVIDWL 129 (137)
Q Consensus 114 ~Sa~~~~~v~~~~~~i 129 (137)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999887654
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=97.89 E-value=4.6e-05 Score=55.38 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCEEEEEEecCCccccH-HhHHH---H--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-SMWER---Y--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL-LVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-~~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 87 (137)
+++.+.++||||..... ..+.. . ...+|.+++|+|+........ ....+.. .+|+ .+|+||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCccc
Confidence 57789999999986432 12111 1 226899999999987543222 2222211 1564 8899999987
Q ss_pred CCCCH-HHHHHHhCCCCC------CCCc----eeEEEeecccCCC-hHHHHHHHHHh
Q 032598 88 EALSK-EDLMEQMGLKSI------TDRE----VCCYMISCKNSTN-IDTVIDWLVKH 132 (137)
Q Consensus 88 ~~~~~-~~~~~~~~~~~~------~~~~----~~~~~~Sa~~~~~-v~~~~~~i~~~ 132 (137)
..... -.+...++.+.. .... .+...+|+..|.| +.++++++.+.
T Consensus 254 ~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 54332 233344432210 0001 1124579999999 99999998765
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00019 Score=50.61 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=24.5
Q ss_pred EEEEEEecCCccccHH-------hHHHHhccCCEEEEEEeCCCC
Q 032598 17 VTIKLWDLGGQPRFRS-------MWERYCRAVSAIVYVVDAADY 53 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~~ 53 (137)
..+++|||||..++.+ .+..+++.+|++++|+|+++.
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 4699999999877554 456678999999999999864
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.006 Score=43.69 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=40.6
Q ss_pred CCEEEEEEecCCccccHH-hHH---H--HhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRS-MWE---R--YCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.++.+.++||+|...... ... . ....+|.+++|+|++..... ......+... -.+..++.||+|...
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcc
Confidence 357899999999644321 111 1 12357999999999864322 2222333322 134578999999864
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0057 Score=43.68 Aligned_cols=108 Identities=9% Similarity=0.043 Sum_probs=58.7
Q ss_pred CCEEEEEEecCCccccHHh-HHH---H--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC-c-EEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSM-WER---Y--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI-P-LLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~-~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~ 86 (137)
.++.+.++||||....... ... . +..+|.+++|+|+.... + .......+. ... | ..++.||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHHH-----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHHh-----hcccCCeEEEEeCCCC
Confidence 5678999999998654321 111 1 12589999999987642 2 222222232 224 5 7899999998
Q ss_pred CCCCC-HHHHHHHhCCCCC--------C--CCceeEEEeecccCCC-hHHHHHHHH
Q 032598 87 PEALS-KEDLMEQMGLKSI--------T--DREVCCYMISCKNSTN-IDTVIDWLV 130 (137)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~--------~--~~~~~~~~~Sa~~~~~-v~~~~~~i~ 130 (137)
..... ...+...++.+.. . ...-+...+|+..|.| +..+++.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~ 306 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAE 306 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTT
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 64322 1223343332100 0 0001123467777877 666655543
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.038 Score=34.72 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=48.3
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-LNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 88 (137)
.+.+.++|+|+.. .......+..+|.+++++.++.. + .......+.+..... ..+.++.++.|+.|...
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 5778999998875 23445567789999999988764 3 566666665544321 24577899999998643
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.83 E-value=0.028 Score=38.12 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=41.9
Q ss_pred CCEEEEEEecCCccc--cHH-hHH-----HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPR--FRS-MWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 85 (137)
+++.+.++||||... ... +.. .....+|.+++|+|+... .+.......+.. ..| ..++.||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 567899999999876 422 221 124468999999998753 222222233322 245 678899999
Q ss_pred CCC
Q 032598 86 KPE 88 (137)
Q Consensus 86 ~~~ 88 (137)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.04 Score=39.38 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=40.1
Q ss_pred CCEEEEEEecCCccc--cH----HhHHHH--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPR--FR----SMWERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~--~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.+..+.++||||... .. ...... ....+.+++|+|+............+... -.+..++.||+|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDG 250 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecccc
Confidence 357788999999754 21 111111 12468999999998643332222222221 1346889999998
Q ss_pred CC
Q 032598 87 PE 88 (137)
Q Consensus 87 ~~ 88 (137)
..
T Consensus 251 ~a 252 (433)
T 3kl4_A 251 TA 252 (433)
T ss_dssp CS
T ss_pred cc
Confidence 63
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.32 Score=31.97 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=44.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~ 86 (137)
+.+.+.++|||+...........+..+|.+++|..+.. .+...+...++.+.. .+.+++ +|.|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEE----TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence 56789999998865432222222336899999987764 456666666555543 356766 89999874
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.37 Score=31.63 Aligned_cols=66 Identities=5% Similarity=-0.112 Sum_probs=45.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+.+.+.++|+|+... ......+..+|.+++++.++. .+..........+... ..+.++.+|.|+.+
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 457799999987643 234456777999999998854 4555555555555433 23567889999994
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.7 Score=29.69 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=55.5
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHH
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDL 95 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 95 (137)
.+.+.++|+|+.... .....+..+|.+++++.++. .+.......++.+... ......+-++.|+.+.........+
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~-~~~~~~~~~v~N~~~~~~~~~~~~~ 193 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSL-QSLRRAGQLLKLCKEF-EKPISRIEIILNRADTNSRITSDEI 193 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSH-HHHHHHHHHHHHHHTC-SSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHh-CCCccceEEEEecCCCCCCCCHHHH
Confidence 467899999875432 34456788999999998753 3455555555555432 2234557899999997766566677
Q ss_pred HHHhCC
Q 032598 96 MEQMGL 101 (137)
Q Consensus 96 ~~~~~~ 101 (137)
.+.++.
T Consensus 194 ~~~~~~ 199 (245)
T 3ea0_A 194 EKVIGR 199 (245)
T ss_dssp HHHHTS
T ss_pred HHHhCC
Confidence 777764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.25 Score=34.87 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=27.8
Q ss_pred EEEEEEecCCccc-------cHHhHHHHhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPR-------FRSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~-------~~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
..+.+||+||... ........++.+|++++|+|+.+
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999533 33345566889999999999875
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.45 Score=30.20 Aligned_cols=68 Identities=10% Similarity=-0.054 Sum_probs=45.5
Q ss_pred CCEEEEEEecCCc-cccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQ-PRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+.+.+.++|||+. ... .....+..+|.+++++.++. .+.......+..+... .+.+..++.|+.+...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 3467899999876 433 23446778999999998754 3445454555544432 1566889999998764
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=91.68 E-value=0.72 Score=32.97 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCEEEEEEecCCccccH-HhHH-----HHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-SMWE-----RYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
.++.+.++||||..... .... .....++.+++|+|+......- .....+.. ..+ .-++.||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence 46789999999975442 2222 1244689999999997653322 22222221 133 34689999986
Q ss_pred CCCC-HHHHHHHhC
Q 032598 88 EALS-KEDLMEQMG 100 (137)
Q Consensus 88 ~~~~-~~~~~~~~~ 100 (137)
.... ...+...++
T Consensus 254 ~~~g~~l~i~~~~~ 267 (433)
T 2xxa_A 254 ARGGAALSIRHITG 267 (433)
T ss_dssp SCCTHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHC
Confidence 4332 223444443
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.77 Score=29.37 Aligned_cols=81 Identities=11% Similarity=-0.050 Sum_probs=51.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-CCHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA-LSKE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~ 93 (137)
+.+.+.++|+|+... ......+..+|.+++|..++. .+.......+..+... ...+.-++.|+.+.... ....
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~ 183 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHH
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCc-ccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHH
Confidence 356789999987644 334556788999999997753 3445555555544432 12345688999986543 3455
Q ss_pred HHHHHhCC
Q 032598 94 DLMEQMGL 101 (137)
Q Consensus 94 ~~~~~~~~ 101 (137)
++.+.++.
T Consensus 184 ~~~~~~~~ 191 (237)
T 1g3q_A 184 AAEDVMEV 191 (237)
T ss_dssp HHHHHHCS
T ss_pred HHHHHhCc
Confidence 66666653
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.84 Score=32.45 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=58.0
Q ss_pred EEEEEecCCccccHHhHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-----
Q 032598 18 TIKLWDLGGQPRFRSMWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP----- 87 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----- 87 (137)
++++||++|..........+ +...+..+. ++..... -+.+ .....+.. .+.|++++.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~-kqrv-~la~aL~~----~~~p~~lV~tkpdlllLDEP 193 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK-KNDI-DIAKAISM----MKKEFYFVRTKVDSDITNEA 193 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC-HHHH-HHHHHHHH----TTCEEEEEECCHHHHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc-HHHH-HHHHHHHh----cCCCeEEEEecCcccccCcc
Confidence 58999999853221112222 334455554 6664311 1111 22223322 468999999999863
Q ss_pred ----CCCCHHHHHHHhCCCC------CCCCceeEEEeec--ccCCChHHHHHHHHHhhh
Q 032598 88 ----EALSKEDLMEQMGLKS------ITDREVCCYMISC--KNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 88 ----~~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa--~~~~~v~~~~~~i~~~~~ 134 (137)
+.....++.+.+.... ........+.+|+ ..+.|++++.+.+.+.+-
T Consensus 194 tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 1122222222221100 0001124788999 777789999999987764
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.014 Score=40.81 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=39.5
Q ss_pred EEEEEecCCccccH--------HhHHHHh--ccCCEEEEEEeCCCC---CChHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 032598 18 TIKLWDLGGQPRFR--------SMWERYC--RAVSAIVYVVDAADY---DNLPVSRSELHDLLSKPSLNGIPLLVLGNKI 84 (137)
Q Consensus 18 ~~~~~Dt~g~~~~~--------~~~~~~~--~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 84 (137)
.+.++||||..... .....++ +..+.+++++++... ..+.. +......+.|+++++||.
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~~~~v~~k~ 284 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRSFVCYMANE 284 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEEEEEEECTT
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCceEEEEecCC
Confidence 37999999964221 1222222 678999999988432 12211 111122568999999999
Q ss_pred CCCCC
Q 032598 85 DKPEA 89 (137)
Q Consensus 85 D~~~~ 89 (137)
|..+.
T Consensus 285 d~~~~ 289 (369)
T 3ec1_A 285 LTVHR 289 (369)
T ss_dssp SCEEE
T ss_pred ccccc
Confidence 98654
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=2 Score=28.45 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=43.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKP 87 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~ 87 (137)
.+.+.++|||+...... .......+|++++|+.... .+...+....+.+.. .+.+++ +|.|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 45789999988643221 2234567899999998865 356666555555543 345665 889999864
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=0.84 Score=29.79 Aligned_cols=71 Identities=18% Similarity=-0.010 Sum_probs=43.7
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcEE-EEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPLL-VLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~i-vv~nK~D~~~ 88 (137)
+.+.+.++|+|+..... ....+..+|.+++++.++. .++......+..+... ....+.+++ ++.|+.+...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 56789999998864332 2345667999999998764 2344333333333211 012456764 8999998653
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=89.28 E-value=0.99 Score=33.68 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=39.8
Q ss_pred CEEEEEEecCCcc-------------ccHHhHHHHhccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
...+.+.|.||.. ....+...+++...++++++-..+.+ .-.........+. ..+.++++|+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~----~~g~rtI~Vl 221 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD----PEGDRTIGIL 221 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC----SSCCSEEEEE
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh----hcCCceEEEe
Confidence 3568999999632 23345555565554544444433322 2222333333332 2467899999
Q ss_pred eCCCCCCCC
Q 032598 82 NKIDKPEAL 90 (137)
Q Consensus 82 nK~D~~~~~ 90 (137)
||.|+....
T Consensus 222 TK~Dlv~~g 230 (608)
T 3szr_A 222 TKPDLVDKG 230 (608)
T ss_dssp ECGGGSSSS
T ss_pred cchhhcCcc
Confidence 999987543
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=89.07 E-value=0.018 Score=40.22 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=39.2
Q ss_pred EEEEecCCccccH--------HhHHHH--hccCCEEEEEEeCCCC---CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 032598 19 IKLWDLGGQPRFR--------SMWERY--CRAVSAIVYVVDAADY---DNLPVSRSELHDLLSKPSLNGIPLLVLGNKID 85 (137)
Q Consensus 19 ~~~~Dt~g~~~~~--------~~~~~~--~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 85 (137)
+.++||||..... .....+ .+..+.+++++++... ..+.. .......+.|+++++||+|
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------~d~l~~~~~~~~~v~nk~d 284 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR--------FDYVSGGRRAFTCHFSNRL 284 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEEEEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE--------EEEecCCCceEEEEecCcc
Confidence 8999999964321 122222 2567889999987421 11111 1111224689999999999
Q ss_pred CCCCCC
Q 032598 86 KPEALS 91 (137)
Q Consensus 86 ~~~~~~ 91 (137)
..+...
T Consensus 285 ~~~~~~ 290 (368)
T 3h2y_A 285 TIHRTK 290 (368)
T ss_dssp CEEEEE
T ss_pred cccccc
Confidence 875543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.70 E-value=1.1 Score=32.09 Aligned_cols=20 Identities=10% Similarity=0.064 Sum_probs=15.7
Q ss_pred CCCcEEEEeeCCCCCCCCCH
Q 032598 73 NGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 73 ~~~p~ivv~nK~D~~~~~~~ 92 (137)
.+.|+++|.||+|.......
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHH
T ss_pred hCCCEEEEEcchhccchHHH
Confidence 57899999999998754333
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=87.62 E-value=0.53 Score=30.27 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=47.3
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED 94 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 94 (137)
+.+.+.++|||+.... .....+..+|.+++|+.++. .++.......+..... .-..+.++.|+.+.. .....
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~~v~N~~~~~--~~~~~ 201 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDL---GIKKVRYVINKVRNI--KEEKL 201 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHH---TCSCEEEEEEEECCH--HHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHc---CCccEEEEEeCCCCh--hHHHH
Confidence 4678999999875433 33455688999999998753 3444444433322221 114578899999832 22344
Q ss_pred HHHHhC
Q 032598 95 LMEQMG 100 (137)
Q Consensus 95 ~~~~~~ 100 (137)
+.+.++
T Consensus 202 ~~~~~~ 207 (254)
T 3kjh_A 202 IKKHLP 207 (254)
T ss_dssp HHHHSC
T ss_pred HHHHhc
Confidence 555554
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=87.46 E-value=0.6 Score=30.29 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=51.4
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCC-----CCCCcEEEEeeCCCCCC--
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPS-----LNGIPLLVLGNKIDKPE-- 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~-- 88 (137)
.+.+.++|+|+... ......+..+|.+++|+.++. .+.......+..+..... ....+.-+|.|+.+...
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~ 189 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSH-HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCCh-hHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence 67899999987543 344556778999999998753 345555555554433210 02256789999988421
Q ss_pred ---CCCHHHHHHHhCC
Q 032598 89 ---ALSKEDLMEQMGL 101 (137)
Q Consensus 89 ---~~~~~~~~~~~~~ 101 (137)
......+.+.++.
T Consensus 190 ~~~~~~~~~~~~~~~~ 205 (260)
T 3q9l_A 190 RGDMLSMEDVLEILRI 205 (260)
T ss_dssp TTSSCCHHHHHHHHCS
T ss_pred cccccCHHHHHHHhCC
Confidence 1223566666653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=85.05 E-value=2 Score=30.70 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCEEEEEEecCCccccH-HhHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR-SMWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~-~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
+++.+.++||||..... ...... .-.++.+++|+|+.... +.......+... .+ ..-++.||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~---l~-i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK---VG-VTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---TC-CCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc---CC-ceEEEEeCcCCcc
Confidence 46778999999975432 122211 22589999999987532 222222222211 11 2467899998753
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=84.41 E-value=0.99 Score=29.40 Aligned_cols=80 Identities=14% Similarity=0.002 Sum_probs=47.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHH
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEAL-SKE 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~ 93 (137)
+.+.+.++|+|+... ......+..+|.+++|+.++. .+.......+..+... ...+.-++.|+.+..... ...
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~ 182 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL---GTKVLGVVVNRITTLGIEMAKN 182 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTTHHHHHH
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCCh-hHHHHHHHHHHHHHhc---CCCeeEEEEccCCcccccchHH
Confidence 356789999987644 334456778999999987653 2344444444444332 123456889999864321 123
Q ss_pred HHHHHhC
Q 032598 94 DLMEQMG 100 (137)
Q Consensus 94 ~~~~~~~ 100 (137)
++.+.++
T Consensus 183 ~~~~~~~ 189 (263)
T 1hyq_A 183 EIEAILE 189 (263)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 4444444
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.77 E-value=7.6 Score=25.93 Aligned_cols=68 Identities=18% Similarity=0.002 Sum_probs=43.2
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+.+.++|||+...... .....+.+|++++|+..... +...+....+.+.+. .....-+|.|+.|...
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQN---GIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence 35689999988654321 23346779999999988753 455555555544432 1233567899998654
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.67 E-value=8.7 Score=25.77 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=41.0
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKPE 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 88 (137)
.+.+.++|||+...... .......+|++++|...... +...+....+.+... +.+ .-+|.|+.|...
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA----GVNIKGAILNGVIKRA 280 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT----TCCCCCEEEEECCCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC----CCCeEEEEEeCCccCC
Confidence 35689999988654321 22345679999999987653 344444444444332 233 237789998653
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=81.63 E-value=5.4 Score=26.41 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=44.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCcE-EEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIPL-LVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~-ivv~nK~D~~~ 88 (137)
+.+.+.++|||+...... ...+..+|.+++++.++. .+...+...+..+... ....++++ -++.|+.|...
T Consensus 153 ~~yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GGCSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred cCCCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 357789999988654322 233456999999998764 4555555444443321 01135664 48899998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 137 | ||||
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 4e-22 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 7e-20 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-17 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-17 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 6e-17 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 8e-17 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 1e-16 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-16 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 5e-16 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 5e-15 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 6e-13 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 1e-12 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 2e-12 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 4e-12 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 5e-12 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 7e-12 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 1e-11 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 2e-11 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-11 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 8e-11 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 1e-10 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 1e-09 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 1e-09 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 3e-09 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 5e-09 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-08 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 3e-08 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 4e-08 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-07 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-07 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 3e-07 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 4e-07 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 8e-07 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 4e-06 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 9e-06 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 2e-05 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 8e-05 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 9e-05 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 2e-04 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 4e-04 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 6e-04 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 0.001 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 0.001 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 0.004 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 84.6 bits (208), Expect = 4e-22
Identities = 45/136 (33%), Positives = 71/136 (52%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
PT+GFN+ ++ N+ + +WDLGGQ R W Y +A+++VVD+ D D + +
Sbjct: 45 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS 104
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
ELH +L + L LLV NK D+P ALS ++ +++ L + DR S
Sbjct: 105 KELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGE 164
Query: 121 NIDTVIDWLVKHSKSK 136
I +DWL+ K +
Sbjct: 165 GITEGLDWLIDVIKEE 180
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 78.5 bits (192), Expect = 7e-20
Identities = 44/133 (33%), Positives = 70/133 (52%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPTVGFN+ VT NV +WD+GGQ + R +W Y +++VVD AD D + +R
Sbjct: 41 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
ELH +++ + +L+ NK D P+A+ ++ E++GL I DR +
Sbjct: 101 ELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 160
Query: 122 IDTVIDWLVKHSK 134
+ + WL + K
Sbjct: 161 LYEGLTWLTSNYK 173
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 71.6 bits (174), Expect = 2e-17
Identities = 40/131 (30%), Positives = 70/131 (53%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ V N++ +WD+GGQ + R +W Y + +++VVD+ D + + +R
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L++ L LLV NK D P A++ ++ +++GL S+ R +
Sbjct: 89 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148
Query: 122 IDTVIDWLVKH 132
+ +DWL
Sbjct: 149 LYEGLDWLSNQ 159
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 71.2 bits (173), Expect = 4e-17
Identities = 44/136 (32%), Positives = 67/136 (49%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT+GFN++ + + +WD+GGQ RS W Y + +++VVD+AD + +
Sbjct: 30 ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ 89
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL LL + L G LL+ NK D P ALS + E + L SI S
Sbjct: 90 RELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGE 149
Query: 121 NIDTVIDWLVKHSKSK 136
++ IDWL+ S+
Sbjct: 150 DLLPGIDWLLDDISSR 165
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 70.8 bits (172), Expect = 6e-17
Identities = 38/132 (28%), Positives = 65/132 (49%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT GFN++ V + +WD+GGQ + R W Y ++YV+D+AD +
Sbjct: 44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 103
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
EL +LL + L+ +P+L+ NK D A ++ E + L +I DR S
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163
Query: 121 NIDTVIDWLVKH 132
+ ++W+ K+
Sbjct: 164 GVQDGMNWVCKN 175
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 70.1 bits (170), Expect = 8e-17
Identities = 93/134 (69%), Positives = 112/134 (83%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
MIPTVGFNMRK+TKGNVTIKLWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S+
Sbjct: 31 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 90
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ELH+LL KP L GIP+LVLGNK D P AL +++L+E+M L +I DRE+CCY ISCK
Sbjct: 91 NELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 150
Query: 121 NIDTVIDWLVKHSK 134
NID + WL++HSK
Sbjct: 151 NIDITLQWLIQHSK 164
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.7 bits (169), Expect = 1e-16
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 7/139 (5%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ PT ++ GN+ +DLGG + R +W+ Y V+ IV++VDAAD + +R
Sbjct: 28 LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEAR 87
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSIT-------DREVCCYM 113
EL L + L +P ++LGNKID P A+S+ +L +GL + T R V +M
Sbjct: 88 VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 147
Query: 114 ISCKNSTNIDTVIDWLVKH 132
S WL ++
Sbjct: 148 CSVVMRNGYLEAFQWLSQY 166
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.4 bits (169), Expect = 2e-16
Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 1 MIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
I T+G + + ++ + +++WD GQ RFR++ Y R I+ V D + +
Sbjct: 35 FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 94
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116
R+ + ++ S + +++ K + ++ G K D + S
Sbjct: 95 DNIRNWIRNIEEHASADVEKMILGNKCDVND----KRQVSKERGEKLALDYGIKFMETSA 150
Query: 117 KNSTNIDTVIDWLVKHSKSK 136
K + N++ L + K+K
Sbjct: 151 KANINVENAFFTLARDIKAK 170
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 68.5 bits (166), Expect = 5e-16
Identities = 36/133 (27%), Positives = 64/133 (48%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
PT+G N+ ++ N +WD+GGQ RS W Y ++ VVD+ D + + V+R
Sbjct: 44 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTRE 103
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL+ +L+ L LL+ NK D E ++ ++ + + L SI D +
Sbjct: 104 ELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 163
Query: 122 IDTVIDWLVKHSK 134
+ ++W++ K
Sbjct: 164 LCQGLEWMMSRLK 176
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (159), Expect = 5e-15
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 9/140 (6%)
Query: 1 MIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL 56
I T+G + + + V +++WD GQ RFR++ Y R I+ V D D
Sbjct: 31 FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDER-- 88
Query: 57 PVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116
+ + + + + L + + + G + + S
Sbjct: 89 --TFTNIKQWFKTVNEHANDEAQL-LLVGNKSDMETRVVTADQGEALAKELGIPFIESSA 145
Query: 117 KNSTNIDTVIDWLVKHSKSK 136
KN N++ + L K + K
Sbjct: 146 KNDDNVNEIFFTLAKLIQEK 165
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 6e-13
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 4/124 (3%)
Query: 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL 67
+ V V +++WD GQ RFRS+ Y R A++ + D + + ++ L ++
Sbjct: 47 KVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH 106
Query: 68 SKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127
+ +L+ E + K + E++ + + S K N+D
Sbjct: 107 EYAQHDVALMLLGNKVDSAHERVVKREDGEKL----AKEYGLPFMETSAKTGLNVDLAFT 162
Query: 128 WLVK 131
+ K
Sbjct: 163 AIAK 166
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 59.7 bits (143), Expect = 1e-12
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
+PT+ ++T +T +DLGG + R +W+ Y A++ IV++VD AD++ L S+
Sbjct: 42 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE 101
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGL------------KSITDREV 109
EL L++ ++ +P+L+LGNKID+PEA+S+E L E GL K + R +
Sbjct: 102 ELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 161
Query: 110 CCYMISCKNSTNIDTVIDWLVKH 132
+M S W+ ++
Sbjct: 162 EVFMCSVLKRQGYGEGFRWMAQY 184
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 2e-12
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 4/125 (3%)
Query: 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDL 66
V + +WD GQ RFR++ Y R ++ V D D + L++L
Sbjct: 46 VKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNEL 105
Query: 67 LSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126
+ + N I +++GNKIDK + + + S K +
Sbjct: 106 ETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAF 161
Query: 127 DWLVK 131
+ LV+
Sbjct: 162 EELVE 166
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.0 bits (139), Expect = 4e-12
Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 4/123 (3%)
Query: 9 MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS 68
+ +++WD GQ R+R++ Y R + + D + ++ + D +
Sbjct: 46 TIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN----AVQDWST 101
Query: 69 KPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDW 128
+ + +K + + + + G + + S K++ N+ +
Sbjct: 102 QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 161
Query: 129 LVK 131
LV
Sbjct: 162 LVD 164
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (139), Expect = 5e-12
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 11 KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP 70
++ V +++WD GQ RFRS+ + Y R+ +A++ D ++ L ++
Sbjct: 48 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 107
Query: 71 SLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLV 130
S I +LV + ++ +Q + +++ S K S N++ + L
Sbjct: 108 SNKVITVLVGNKIDLAE----RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 163
Query: 131 K 131
Sbjct: 164 C 164
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.9 bits (139), Expect = 7e-12
Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 2 IPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
I T+G + + ++ V +++WD GQ RFR++ Y R I+ V D
Sbjct: 36 ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYD-VTDQESF 94
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 117
+ + + + + L++GNK D + K + + + ++ S
Sbjct: 95 NGVKMWLQEIDRYATSTVLKLLVGNKCDLKD---KRVVEYDVAKEFADANKMPFLETSAL 151
Query: 118 NSTNIDTVIDWLVKHSKSK 136
+STN++ + + K
Sbjct: 152 DSTNVEDAFLTMARQIKES 170
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 1e-11
Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ G N V ++LWD GQ RFRS+ + R + + D + R
Sbjct: 48 VYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR 107
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ + L + ++++GNK D P+ + ++ E+ + + + S
Sbjct: 108 NWMSQLQANAYCENPDIVLIGNKADLPD---QREVNERQARELADKYGIPYFETSAATGQ 164
Query: 121 NIDTVIDWLVKHSKSK 136
N++ ++ L+ +
Sbjct: 165 NVEKAVETLLDLIMKR 180
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.1 bits (137), Expect = 2e-11
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN------ 55
+ T G K V ++D+GGQ R W + V+AI++VV ++ Y+
Sbjct: 32 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 91
Query: 56 ----LPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89
L + + + + L I +++ NK D
Sbjct: 92 QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 129
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 56.3 bits (134), Expect = 2e-11
Identities = 48/135 (35%), Positives = 77/135 (57%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRS 61
IPT+GFN+ VT N+ ++WDLGG R W Y A++YVVD+ D D + +S+S
Sbjct: 34 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 93
Query: 62 ELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTN 121
EL +L + L L+V NK D +A++ ++ +GL ++ DR+ + S T
Sbjct: 94 ELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG 153
Query: 122 IDTVIDWLVKHSKSK 136
+D ++WLV+ KS+
Sbjct: 154 LDEAMEWLVETLKSR 168
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (130), Expect = 8e-11
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 4/126 (3%)
Query: 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDL 66
+V + ++WD GQ R+R + Y R + V D A + L +L
Sbjct: 43 TRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 102
Query: 67 LSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126
+ I ++++GNK D + + S +STN++
Sbjct: 103 RDHAD-SNIVIMLVGNKSDLRH---LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 158
Query: 127 DWLVKH 132
++
Sbjct: 159 KNILTE 164
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.1 bits (129), Expect = 1e-10
Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ G + +V+ + +++WD GQ RFR++ Y R + + V D
Sbjct: 37 IGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS 96
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
S L D + ++++GNK D + D+ + + + + S K
Sbjct: 97 SWLTDAR-NLTNPNTVIILIGNKADLEA---QRDVTYEEAKQFAEENGLLFLEASAKTGE 152
Query: 121 NIDTVIDWLVK 131
N++ K
Sbjct: 153 NVEDAFLEAAK 163
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 1e-09
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL 67
M + + +++WD GQ FRS+ Y R + + V D + S L D
Sbjct: 43 RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 102
Query: 68 SKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127
S + + ++++GNK D + D+ + G + + S K + N++
Sbjct: 103 QHSS-SNMVIMLIGNKSDLES---RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI 158
Query: 128 WLVKHSKSK 136
K K
Sbjct: 159 NTAKEIYRK 167
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.9 bits (123), Expect = 1e-09
Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 33/163 (20%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD------- 54
+PT G +V ++ D+GGQ R W V++I+++V ++YD
Sbjct: 30 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 89
Query: 55 ---NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQ------------- 98
+ S++ +++ P +++ NK D E +
Sbjct: 90 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQ 149
Query: 99 ----------MGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
+ L +D+ + + ++ NI V +
Sbjct: 150 AAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 192
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 3e-09
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 4/136 (2%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ G + V V +++WD GQ RFRS+ Y R + + V D +
Sbjct: 38 IGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALT 97
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ L D S I +++ GNK D ++ + + E+ S
Sbjct: 98 NWLTDARMLAS-QNIVIILCGNKKDLDA---DREVTFLEASRFAQENELMFLETSALTGE 153
Query: 121 NIDTVIDWLVKHSKSK 136
N++ + +K
Sbjct: 154 NVEEAFVQCARKILNK 169
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.3 bits (119), Expect = 5e-09
Identities = 24/161 (14%), Positives = 55/161 (34%), Gaps = 34/161 (21%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL---- 56
PT G + NV K+ D+GGQ R W +V++I+++V ++++D +
Sbjct: 28 QDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 87
Query: 57 ------PVSRSELHDLLSKPSLNGIPLLVLGN-KIDKPEALSKEDLMEQMG--------- 100
S + +++ + + +++ N E + + +
Sbjct: 88 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCL 147
Query: 101 --------------LKSITDREVCCYMISCKNSTNIDTVID 127
+ R + + + N+ NI V
Sbjct: 148 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 188
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 1e-08
Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 3/131 (2%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
I +V +++ D G +F SM + Y + + V + + +
Sbjct: 35 TIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK 94
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
++ +P++++GNK+D + ++ G + S K+ T
Sbjct: 95 PMRDQIIRVKRYEKVPVILVGNKVDLES---EREVSSSEGRALAEEWGCPFMETSAKSKT 151
Query: 121 NIDTVIDWLVK 131
+D + +V+
Sbjct: 152 MVDELFAEIVR 162
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 47.6 bits (112), Expect = 3e-08
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 3/115 (2%)
Query: 22 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81
D GQ + ++ + Y R+ + V + ++ + +L +P L++G
Sbjct: 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116
Query: 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136
NK D + + V S K N+D V L++ +++
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQW---NVNYVETSAKTRANVDKVFFDLMREIRAR 168
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 4e-08
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV---YVVDAADYDNLPVSRSEL 63
+V VT+++WD GQ RFRS+ + R + V D+ + NL + E
Sbjct: 45 NKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 104
Query: 64 HDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNID 123
P ++LGNKID E ++ E+ + + + S K++TN+
Sbjct: 105 IYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 161
Query: 124 TVIDWLVK 131
+ V+
Sbjct: 162 AAFEEAVR 169
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.8 bits (107), Expect = 2e-07
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM----WERYCRAVSAIVYVVDAADYD-NL 56
++ + N L P S+ +R+ + A+V+VVD+A + +
Sbjct: 29 QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREV 88
Query: 57 PVSRSELHDLLSKPSL--NGIPLLVLGNKIDKPEALSKEDLMEQM 99
L+ +L N LL+ NK D A S + + +Q+
Sbjct: 89 KDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL 133
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.7 bits (107), Expect = 2e-07
Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 33/162 (20%)
Query: 3 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR-- 60
G T ++ K++D+GGQ R W V+AI++ V +DYD +
Sbjct: 28 AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 87
Query: 61 --------SELHDLLSKPSLNGIPLLVLGN-KIDKPEALSKEDLMEQMG----------- 100
+ + +++ N K E + K L
Sbjct: 88 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEA 147
Query: 101 -----------LKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
K +E+ + ++ N+ V D +
Sbjct: 148 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 189
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (105), Expect = 3e-07
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 22 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81
WD GQ RF S+ Y R A + V D + +R + +L + S I + ++G
Sbjct: 57 WDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVG 115
Query: 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136
NKID + + + + G K ++ + + S K N++ V + + K
Sbjct: 116 NKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 4e-07
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75
+ ++LWD GQ RFRS+ Y R +A V V D + ++ + + D+ ++ + I
Sbjct: 48 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 107
Query: 76 PLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
+LV GNK D + + K + V S K N+ + +
Sbjct: 108 IMLV-GNKTDLADKRQVSIEEGERKAKEL---NVMFIETSAKAGYNVKQLFRRVAA 159
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 8e-07
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDL 66
+ V ++WD GQ R+ S+ Y R A + V D + ++ +++ + +L
Sbjct: 45 TQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
Query: 67 LSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVI 126
+ S I + + GNK D + + Q D + S K S N++ +
Sbjct: 105 QRQAS-PNIVIALSGNKADLANKRAVDFQEAQSYAD---DNSLLFMETSAKTSMNVNEIF 160
Query: 127 DWLVKH 132
+ K
Sbjct: 161 MAIAKK 166
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 4e-06
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 2/131 (1%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
I +V +++ D G +F +M + Y + V +
Sbjct: 35 TIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQ 94
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+L +P++++GNK D + Q + + S K+
Sbjct: 95 DLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN--CAFLESSAKSKI 152
Query: 121 NIDTVIDWLVK 131
N++ + LV+
Sbjct: 153 NVNEIFYDLVR 163
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 9e-06
Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 4/131 (3%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
I + + + D GQ + +M ++Y R + V + +
Sbjct: 35 TIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIH 94
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNST 120
+ + +P++++GNK D + + + + S K
Sbjct: 95 QYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDL----ARSYGIPYIETSAKTRQ 150
Query: 121 NIDTVIDWLVK 131
++ LV+
Sbjct: 151 GVEDAFYTLVR 161
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-05
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 4/114 (3%)
Query: 18 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77
+ +WD GQ RF ++ Y R + + V D D D+ ++ + +L
Sbjct: 53 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC 112
Query: 78 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
+V + E E Y S K + I+ + L K
Sbjct: 113 IVGNKIDLEKERHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCK 162
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (87), Expect = 8e-05
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 18 TIKLWDLGGQPRFRSMWERYCRAVSAIV---YVVDAADYDNLPVSRSELHDLLSKPSLNG 74
T+++WD GQ RF+S+ + R V V +A+ ++N+ R E + S
Sbjct: 53 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 112
Query: 75 IPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134
P ++LGNKID E+ L + ++ ++ S KN+ N+DT + + + +
Sbjct: 113 FPFVILGNKIDAEESKKIVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEIARSAL 171
Query: 135 SKS 137
++
Sbjct: 172 QQN 174
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 9e-05
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 11/141 (7%)
Query: 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSR 60
+ V V + LWD GQ + + + + R
Sbjct: 37 TVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVR 96
Query: 61 SELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED---------LMEQMGLKSITDREVCC 111
++ + + P++++G K+D + + + GL +
Sbjct: 97 AKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 155
Query: 112 YM-ISCKNSTNIDTVIDWLVK 131
Y+ S + TV D ++
Sbjct: 156 YLECSALTQRGLKTVFDEAIR 176
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 2e-04
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 22 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81
D GQ F +M E+Y RA + V D + +L + P++++G
Sbjct: 59 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 118
Query: 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136
NK D S V + S K N+D + LV+ +
Sbjct: 119 NKADLESQRQVPRSEASAFGAS---HHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 4e-04
Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 14/144 (9%)
Query: 1 MIPTVGFNMRKVTKG---NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLP 57
+PTV + + L+D GQ + + + + +
Sbjct: 38 YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 97
Query: 58 VSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE--------- 108
+ E L K +P L++G +ID + + M K I +
Sbjct: 98 NVKEEWVPEL-KEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 156
Query: 109 VCCYM-ISCKNSTNIDTVIDWLVK 131
CCY+ S + TV D +
Sbjct: 157 ACCYVECSALTQKGLKTVFDEAII 180
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 6e-04
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 3/110 (2%)
Query: 22 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81
D GQ F +M E+Y R + V D + +L + P++++G
Sbjct: 58 LDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG 117
Query: 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVK 131
NK D Q + + +V S K N+D LV+
Sbjct: 118 NKADLDHQRQVTQEEGQQLARQL---KVTYMEASAKIRMNVDQAFHELVR 164
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.1 bits (79), Expect = 0.001
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 2 IPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD---YD 54
T+G V VT+++WD GQ RF+S+ + R V V D +
Sbjct: 32 KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 91
Query: 55 NLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMI 114
L R E S P +VLGNKID ++ ++ + + +
Sbjct: 92 TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFET 148
Query: 115 SCKNSTNIDTVIDWLVKH 132
S K + N++ + ++
Sbjct: 149 SAKEAINVEQAFQTIARN 166
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.6 bits (78), Expect = 0.001
Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 14/143 (9%)
Query: 2 IPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPV 58
+PTV N + + V + LWD G + + I+ D+L
Sbjct: 32 VPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN 91
Query: 59 SRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDRE---------- 108
+ + N +LV GNK D + +M + + E
Sbjct: 92 IPEKWTPEVKHFCPNVPIILV-GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 150
Query: 109 VCCYMISCKNSTNIDTVIDWLVK 131
S K + V + +
Sbjct: 151 FGYMECSAKTKDGVREVFEMATR 173
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 33.1 bits (74), Expect = 0.004
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 5/124 (4%)
Query: 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLL 67
+V +V + LWD GQ F ++ + Y R A V V D ++ S
Sbjct: 42 RQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK-- 99
Query: 68 SKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVID 127
+ IP ++ NKID + + + ++ Y S K N+ V
Sbjct: 100 VVAEVGDIPTALVQNKIDLLD---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 156
Query: 128 WLVK 131
+L +
Sbjct: 157 YLAE 160
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 137 | |||
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.96 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.96 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.96 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.95 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.94 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.93 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.92 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.92 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.92 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.92 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.91 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.9 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.9 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.9 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.89 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.89 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.89 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.89 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.89 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.89 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.88 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.88 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.86 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.86 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.85 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.85 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.84 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.84 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.82 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.81 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.79 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.74 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.7 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.66 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.66 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.65 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.65 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.64 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.64 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.6 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.6 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.59 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.58 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.58 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.54 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.54 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.5 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.48 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.47 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.42 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.42 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.42 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.29 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.05 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 98.91 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.91 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.78 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.7 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 98.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.43 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.33 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.27 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.13 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.09 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 97.52 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 97.1 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.0 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.74 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.31 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.13 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 92.56 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.97 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.67 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.84 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.5 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 84.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 83.82 |
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.97 E-value=3e-29 Score=156.19 Aligned_cols=133 Identities=69% Similarity=1.248 Sum_probs=121.1
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|+++..++.+++.+.+||+||++.+...+..+++.++++++|+|+++.+++.....++..+.+.....++|++++
T Consensus 31 ~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv 110 (164)
T d1zd9a1 31 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 110 (164)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEE
T ss_pred ccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999988887766678999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.+.....++.+.++......+.+.++++||++|+|++++|+||++.+
T Consensus 111 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~ 163 (164)
T d1zd9a1 111 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163 (164)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred EeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence 99999988777788888887666666788899999999999999999999865
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.96 E-value=5.1e-29 Score=157.52 Aligned_cols=135 Identities=33% Similarity=0.635 Sum_probs=118.8
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||.+.....+..+++.+.+||++|++.++..+..+++.++++++|+|+++..++.....|+....+.....++|+++++
T Consensus 46 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~ 125 (182)
T d1moza_ 46 KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 125 (182)
T ss_dssp CSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEE
T ss_pred ccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEE
Confidence 68999999999999999999999999999999999999999999999999999999998888888776666789999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
||+|+.+.....++...++......+.+++++|||++|+|++++|++|++.+.++
T Consensus 126 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 126 NKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp ECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 9999988778888888887666666788999999999999999999999999865
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.96 E-value=1.5e-28 Score=153.02 Aligned_cols=136 Identities=32% Similarity=0.596 Sum_probs=119.9
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||+|.+...++.+++.+.+||+||++.++..+..+++.++++++|+|+++..++.....++..........++|++++
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv 109 (165)
T d1ksha_ 30 ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIF 109 (165)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEE
Confidence 46899999999999999999999999999999999999999999999999999899888888777776655678999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+||+|+.+.....+....+.......+.+++++|||++|+|++++|+||++.+.++
T Consensus 110 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~r 165 (165)
T d1ksha_ 110 ANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165 (165)
T ss_dssp EECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 99999988888777777776555555678899999999999999999999988754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.96 E-value=7.1e-28 Score=151.33 Aligned_cols=132 Identities=29% Similarity=0.589 Sum_probs=117.2
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.|++|++...++.+++.+.+||++|++.++..+..+++.++++++|+|+++..++.....++..+.......++|+++++
T Consensus 45 ~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~ 124 (176)
T d1fzqa_ 45 TPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124 (176)
T ss_dssp EEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEE
T ss_pred eeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEE
Confidence 47888899999999999999999999999999999999999999999999999999988888887776566789999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
||+|+.+......+.+.++......+.+++++|||++|+|++++|+||++.+
T Consensus 125 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred EeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 9999988877777777776555556678899999999999999999999764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.95 E-value=1.2e-27 Score=150.06 Aligned_cols=132 Identities=33% Similarity=0.665 Sum_probs=118.6
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||.++.......+.+.+.+||+||++.++..+..+++.++++++|+|+++.+++..+..|+....+.....++|+++++
T Consensus 41 ~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~ 120 (173)
T d1e0sa_ 41 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 120 (173)
T ss_dssp EEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred cceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeee
Confidence 47888888888899999999999999999999999999999999999999999999998888888776556789999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
||+|+.+.....++...++......+.+++++|||++|+||+++|++|.+.+
T Consensus 121 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 121 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence 9999988778778888887666666788999999999999999999998865
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.8e-27 Score=148.64 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=92.6
Q ss_pred Ccccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEE
Q 032598 3 PTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLV 79 (137)
Q Consensus 3 pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 79 (137)
||.+..+. .+ +++.+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|...+.......++|+++
T Consensus 31 ~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piil 110 (168)
T d2gjsa1 31 EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 110 (168)
T ss_dssp ---CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEE
T ss_pred CeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEE
Confidence 55554443 33 3456899999999999999999999999999999999999999999999999887665557799999
Q ss_pred EeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 80 LGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 80 v~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
|+||+|+.....+ .++...++ +++++|||++|.|++++|.+|++.+..+
T Consensus 111 vgnK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~e~Sak~~~~v~~~f~~l~~~i~~~ 164 (168)
T d2gjsa1 111 VGNKSDLVRSREVSVDEGRACAVVFD--------CKFIETSAALHHNVQALFEGVVRQIRLR 164 (168)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHHHT--------SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred eecccchhhhcchhHHHHHHHHHhcC--------CEEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999765432 22333333 4699999999999999999999988654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.94 E-value=4.6e-27 Score=146.80 Aligned_cols=128 Identities=22% Similarity=0.341 Sum_probs=102.9
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++.++.. +++..+.+.+||++|++.+..++..+++.++++++|+|+++..+++.+..|+..+.+.....++|+
T Consensus 33 ~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 112 (168)
T d1u8za_ 33 YEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 112 (168)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCE
T ss_pred cCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcE
Confidence 57899866543 334468899999999999999999999999999999999999999999999998877655578999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+.+.+.+ + +....++ +.+++|||++|+||+++|++|++.+.+|
T Consensus 113 iivgnK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~e~Sak~g~gv~e~f~~l~~~i~~r 168 (168)
T d1u8za_ 113 LLVGNKSDLEDKRQVSVEEAKNRADQWN--------VNYVETSAKTRANVDKVFFDLMREIRAR 168 (168)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHHT--------CEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeccccccccccccHHHHHHHHHHcC--------CeEEEEcCCCCcCHHHHHHHHHHHHHCc
Confidence 999999998765432 2 2333333 4699999999999999999999998754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=7.2e-27 Score=146.16 Aligned_cols=127 Identities=20% Similarity=0.400 Sum_probs=104.1
Q ss_pred CCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||+|.++.... ++.+.+.+|||+|++.+..+++.++++++++++|||+++.++++.+..|+..+.+. ..++|+
T Consensus 33 ~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~--~~~~pi 110 (170)
T d1i2ma_ 33 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPI 110 (170)
T ss_dssp EEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHH--HCSCCE
T ss_pred ccceeccccccccccccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhc--cCCCce
Confidence 588886654322 35689999999999999999999999999999999999999999999999887764 257999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+.......+...... ..++.++++||++|+||+++|.+|++.+.+
T Consensus 111 ilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 163 (170)
T d1i2ma_ 111 VLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKLIG 163 (170)
T ss_dssp EEEEECCCCSCSCCTTTSHHHHS-----SCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred eeecchhhhhhhhhhhHHHHHHH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence 99999999977655433222222 235679999999999999999999998864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=8.9e-26 Score=141.03 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=104.7
Q ss_pred CCCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. +. ...+.+.+||++|++.+...+..+++.++++++|||++++.+++.+..|+..+.+.....++|+
T Consensus 33 ~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ 112 (169)
T d1x1ra1 33 YDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 112 (169)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCE
T ss_pred cCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccE
Confidence 35788755433 33 4458899999999999999999999999999999999999999999999998876655568999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCC-ChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNST-NIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+.+.+.+ .++...++ +.++++||+++. ||+++|..|++.+.++
T Consensus 113 ilvgnK~Dl~~~~~v~~e~~~~~~~~~~--------~~~~e~Sak~~~~nV~~~F~~l~~~i~~~ 169 (169)
T d1x1ra1 113 ILVANKVDLMHLRKVTRDQGKEMATKYN--------IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169 (169)
T ss_dssp EEEEECTTCSTTCCSCHHHHHHHHHHHT--------CCEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred EEEecccchhhhceeehhhHHHHHHHcC--------CEEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence 999999999776543 23444444 359999999886 9999999999998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.1e-26 Score=143.46 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=98.9
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..... ++.+.+.+.+||++|++.+...++.+++++|++++|||+++++|++....|........ .+++|+
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~pi 109 (177)
T d1kmqa_ 31 YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPI 109 (177)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCE
T ss_pred cCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCCce
Confidence 46888855532 33456789999999999999999999999999999999999999988776555544432 257999
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+................ .....+|++|||++|+||+++|+.+++.+.+
T Consensus 110 ilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 110 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177 (177)
T ss_dssp EEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence 999999999764322211111111100 0112469999999999999999999998763
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.5e-26 Score=141.46 Aligned_cols=128 Identities=21% Similarity=0.278 Sum_probs=101.7
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC-CCCCCCc
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK-PSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p 76 (137)
+.||++..+.. ++.+.+.+.+||++|++.+...+..+++.++++++|||++++++++.+..|...+.+. ....++|
T Consensus 31 ~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p 110 (171)
T d2erxa1 31 YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP 110 (171)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC
T ss_pred cCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCc
Confidence 46899866543 3334578899999999999999999999999999999999999999988888777653 2346799
Q ss_pred EEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++|+||+|+.+.+.+ .++...++ +++++|||++|+||+++|..|++.+.++
T Consensus 111 iilVgnK~Dl~~~~~v~~~e~~~~~~~~~--------~~~~e~Sak~~~~v~e~f~~l~~~~~~~ 167 (171)
T d2erxa1 111 IMLVGNKCDESPSREVQSSEAEALARTWK--------CAFMETSAKLNHNVKELFQELLNLEKRR 167 (171)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred EEEEeecccccccccccHHHHHHHHHHcC--------CeEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999998765432 22334333 4699999999999999999999988755
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.3e-25 Score=139.97 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=104.1
Q ss_pred CCCcccceeeE-E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. + +.+.+.+.+||++|++.+...++.+++.++++++|+|++++.+++.+..|+..+.+....+++|+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ 111 (167)
T d1c1ya_ 32 YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111 (167)
T ss_dssp CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCE
T ss_pred cCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeE
Confidence 46888855542 2 35568999999999999999999999999999999999999999999999998876545578999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...... + .....+ .++++++|||++|+||+++|.+|++.+.+
T Consensus 112 ilvgnK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~e~Sak~g~gv~e~F~~l~~~i~k 167 (167)
T d1c1ya_ 112 ILVGNKCDLEDERVVGKEQGQNLARQW-------CNCAFLESSAKSKINVNEIFYDLVRQINR 167 (167)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHT-------TSCEEEECBTTTTBSHHHHHHHHHHHHTC
T ss_pred EEEEEecCcccccccchhHHHHHHHHh-------CCCEEEEEcCCCCcCHHHHHHHHHHHhcC
Confidence 999999999765432 1 222222 23569999999999999999999998763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=4.9e-25 Score=137.56 Aligned_cols=127 Identities=21% Similarity=0.442 Sum_probs=100.1
Q ss_pred CCCcccceee--EEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||.+.+.. .+.. ..+.+++|||||++.+..++..+++++|++|+|+|+++++++.....|....... .....|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~ 112 (169)
T d3raba_ 34 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQ 112 (169)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-CCSCCE
T ss_pred cccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcc-cCCcce
Confidence 3567774443 3333 3478999999999999999999999999999999999999998888877666443 346789
Q ss_pred EEEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++++||+|+.+.... . .....++ +++++|||++|+|++++|++|++.+.++
T Consensus 113 iivv~nK~D~~~~~~v~~~~~~~~~~~~~--------~~~~e~Sak~g~gv~e~f~~l~~~i~ek 169 (169)
T d3raba_ 113 VLLVGNKCDMEDERVVSSERGRQLADHLG--------FEFFEASAKDNINVKQTFERLVDVICEK 169 (169)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHHHHTC
T ss_pred EEEEEeecccccccccchhhhHHHHHHcC--------CEEEEecCCCCcCHHHHHHHHHHHHhhC
Confidence 9999999998765432 2 2333333 4699999999999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-25 Score=140.87 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=101.6
Q ss_pred CCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 2 IPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 2 ~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.||.+.... .+. +..+.+.+||++|++++...+..+++.++++++|+|+++..+++.+..|+..+.+.....+.|++
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 115 (173)
T d2fn4a1 36 DPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 115 (173)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE
T ss_pred ccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceE
Confidence 466553332 333 34588899999999999999999999999999999999999999999998888765445789999
Q ss_pred EEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+|+||+|+...+.. ......+ ++++++|||++|+||+++|+.+++.+.++
T Consensus 116 lvgnK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~e~Sak~g~gv~e~f~~l~~~i~k~ 170 (173)
T d2fn4a1 116 LVGNKADLESQRQVPRSEASAFGASH--------HVAYFEASAKLRLNVDEAFEQLVRAVRKY 170 (173)
T ss_dssp EEEECGGGGGGCCSCHHHHHHHHHHT--------TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEeechhhccccchhhhhHHHHhc--------CCEEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 99999998765432 2223333 34699999999999999999999998764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4e-26 Score=142.27 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=103.9
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++.++.. +++..+.+.+||++|.+.+..++..+++.+|++++|||++++++++.+..|+..+.+.....++|+
T Consensus 33 ~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 112 (167)
T d1xtqa1 33 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI 112 (167)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCE
T ss_pred cCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccce
Confidence 46888866542 334458889999999999999889999999999999999999999999999988876555578999
Q ss_pred EEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+...+. .+ .+...++ +.|++|||++|+||+++|+.|++.+.+
T Consensus 113 ilvgnK~Dl~~~r~v~~~~~~~~a~~~~--------~~~~e~Sak~~~~v~~~f~~li~~~~K 167 (167)
T d1xtqa1 113 MLVGNKKDLHMERVISYEEGKALAESWN--------AAFLESSAKENQTAVDVFRRIILEAEK 167 (167)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccccccccccchhHHHHHHHHHHcC--------CEEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 99999999876543 22 2344443 359999999999999999999988753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.8e-25 Score=138.27 Aligned_cols=128 Identities=22% Similarity=0.305 Sum_probs=99.7
Q ss_pred CCCcccceee-EE--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~-~~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||.+.... .+ ++..+.+.+||++|++.+...+..+++.+|++++|+|.+++++++.+..|...+.+.......|+
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 113 (171)
T d2erya1 34 YDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113 (171)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSE
T ss_pred cCcccccceeeeeeecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCE
Confidence 4678774443 23 33458899999999999999999999999999999999999999999999888776555567999
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+...... . ++.+.+ ++++++|||++|.||+++|.+|++.+.++
T Consensus 114 ilvgnK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~Sak~~~~i~e~f~~l~~~i~k~ 169 (171)
T d2erya1 114 ILIGNKADLDHQRQVTQEEGQQLARQL--------KVTYMEASAKIRMNVDQAFHELVRVIRKF 169 (171)
T ss_dssp EEEEECTTCTTSCSSCHHHHHHHHHHT--------TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhhccchHHHHHHHHHHc--------CCEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999765332 2 233333 34699999999999999999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2e-25 Score=139.31 Aligned_cols=128 Identities=21% Similarity=0.221 Sum_probs=99.9
Q ss_pred CCCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++.++.. +. ++.+.+.+||++|++.+. ....+++.++++++|+|+++++++..+..|...........+.|+
T Consensus 31 ~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 109 (168)
T d2atva1 31 YDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 109 (168)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE
T ss_pred cCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcce
Confidence 57999977654 22 344889999999998875 456789999999999999999999998887665544434468999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCC-ChHHHHHHHHHhhhhcC
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNST-NIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~~~ 137 (137)
++|+||+|+.+.+.+ .++...++ +.|++|||++|+ ||+++|..|++.+.++|
T Consensus 110 ilvgnK~Dl~~~r~V~~~e~~~~a~~~~--------~~~~e~Saktg~gnV~e~F~~l~~~i~~~r 167 (168)
T d2atva1 110 ILVGNKADLDHSRQVSTEEGEKLATELA--------CAFYECSACTGEGNITEIFYELCREVRRRR 167 (168)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHHT--------SEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred eeeccchhhhhhccCcHHHHHHHHHHhC--------CeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence 999999999765432 23344443 369999999998 59999999999987653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=2.4e-25 Score=138.34 Aligned_cols=125 Identities=24% Similarity=0.413 Sum_probs=101.3
Q ss_pred CCCcccceeeE--EEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..... ... ..+.+.+|||+|++.+..++..+++.++++++|+|+++..+++.+..|++.+... .+++|
T Consensus 31 ~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~ 108 (164)
T d1z2aa1 31 YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE--VGDIP 108 (164)
T ss_dssp SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--HCSCC
T ss_pred cccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhccccccccccc--CCCce
Confidence 46888865543 333 3588999999999999999999999999999999999999999999999888653 25799
Q ss_pred EEEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||+|+.+.+.. .++.+.++ +.++++||++|.||+++|++|++.+.+
T Consensus 109 iilVgnK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~e~Sak~g~~v~e~f~~l~~~~lq 164 (164)
T d1z2aa1 109 TALVQNKIDLLDDSCIKNEEAEGLAKRLK--------LRFYRTSVKEDLNVSEVFKYLAEKHLQ 164 (164)
T ss_dssp EEEEEECGGGGGGCSSCHHHHHHHHHHHT--------CEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred EEEeeccCCcccceeeeehhhHHHHHHcC--------CEEEEeccCCCcCHHHHHHHHHHHHhC
Confidence 9999999998765432 22333333 469999999999999999999998753
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.3e-25 Score=139.70 Aligned_cols=126 Identities=19% Similarity=0.269 Sum_probs=96.9
Q ss_pred CCCcccceeeE-EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
++||++..... +. +..+.+.+||++|++.+...+..+++++|++++|||++++++++....|.....+.. ..++|+
T Consensus 38 ~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ 116 (185)
T d2atxa1 38 YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPF 116 (185)
T ss_dssp CCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCE
T ss_pred CCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCe
Confidence 46888854443 32 355889999999999999999999999999999999999999988765555444432 367999
Q ss_pred EEEeeCCCCCCCCCH--------------H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSK--------------E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++|+||+|+.+.... + ++...++ .+.|++|||++|+||+++|+.+++.+.
T Consensus 117 ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~-------~~~~~E~SAk~~~gv~e~F~~li~~il 183 (185)
T d2atxa1 117 LLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG-------ACCYVECSALTQKGLKTVFDEAIIAIL 183 (185)
T ss_dssp EEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT-------CSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcC-------CCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence 999999998753211 1 1222232 246999999999999999999998874
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.6e-25 Score=137.53 Aligned_cols=125 Identities=25% Similarity=0.370 Sum_probs=98.1
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++..+ ..+.. +.+++.+|||||++.+..+++.++++++++++|+|.++..+++....|...+.... ...+|+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ 113 (171)
T d2ew1a1 35 GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVIT 113 (171)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred cccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccc-cccccE
Confidence 45565433 33443 45789999999999999999999999999999999999999999888888776542 357899
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+.... . ++.+..+ +++++|||++|+||+++|.+|++.+.+
T Consensus 114 ilvgnK~D~~~~~~v~~~~~~~~~~~~~--------~~~~~~SAktg~gV~e~f~~l~~~l~~ 168 (171)
T d2ew1a1 114 VLVGNKIDLAERREVSQQRAEEFSEAQD--------MYYLETSAKESDNVEKLFLDLACRLIS 168 (171)
T ss_dssp EEEEECGGGGGGCSSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeecccccccchhhhHHHHHHHhCC--------CEEEEEccCCCCCHHHHHHHHHHHHHH
Confidence 999999998754332 2 2333333 359999999999999999999977654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.9e-25 Score=136.59 Aligned_cols=126 Identities=20% Similarity=0.316 Sum_probs=101.9
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. ++...+.+.+||++|++.+...+..++++++++++|+|+++..++..+..|...+.......++|+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 111 (167)
T d1kaoa_ 32 YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV 111 (167)
T ss_dssp CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE
T ss_pred cCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCE
Confidence 35777744332 334458899999999999999999999999999999999999999999999888876555578999
Q ss_pred EEEeeCCCCCCCCCH-----HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSK-----EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++|+||+|+.+.... ......++ +++++|||++|+|++++|.+|++.+.
T Consensus 112 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~e~Sak~g~~i~e~f~~i~~~i~ 165 (167)
T d1kaoa_ 112 ILVGNKVDLESEREVSSSEGRALAEEWG--------CPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp EEEEECGGGGGGCCSCHHHHHHHHHHHT--------SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccchhhcccchHHHHHHHHHHcC--------CeEEEECCCCCcCHHHHHHHHHHHHc
Confidence 999999998765432 12333333 35999999999999999999998875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.8e-24 Score=133.09 Aligned_cols=128 Identities=19% Similarity=0.305 Sum_probs=103.6
Q ss_pred CCCcccceeeE-E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..+.. + .++.+.+.+||++|++.+...+..+++.++++++|+|++++.+++.+..|+..+.......++|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 111 (166)
T d1ctqa_ 32 YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111 (166)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCE
T ss_pred cCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeE
Confidence 35777754432 2 23468899999999999999999999999999999999999999999999998877655578999
Q ss_pred EEEeeCCCCCCCCCHH----HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSKE----DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+....... ++...++ +.+++|||++|+||+++|.+|++.+.++
T Consensus 112 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~e~Sak~g~gi~e~f~~i~~~i~~~ 166 (166)
T d1ctqa_ 112 VLVGNKCDLAARTVESRQAQDLARSYG--------IPYIETSAKTRQGVEDAFYTLVREIRQH 166 (166)
T ss_dssp EEEEECTTCSCCCSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEecccccccccccHHHHHHHHHHhC--------CeEEEEcCCCCcCHHHHHHHHHHHHHhC
Confidence 9999999986543222 2333333 3599999999999999999999988754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.5e-24 Score=132.94 Aligned_cols=124 Identities=23% Similarity=0.380 Sum_probs=100.0
Q ss_pred CCCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++....... ...+.+.+||++|++.+...+..+++.++++++|+|.++..+++.+..|+..+.... ..++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~-~~~~~ 107 (164)
T d1yzqa1 29 YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVI 107 (164)
T ss_dssp CCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSE
T ss_pred cccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhc-CCCce
Confidence 4577775554322 345899999999999999999999999999999999999999999999988776542 35799
Q ss_pred EEEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 77 LLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+++|+||+|+.+.... . +..+.+ ++.+++|||++|+||+++|++|++.+
T Consensus 108 iilvgnK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~e~SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 108 IMLVGNKTDLADKRQVSIEEGERKAKEL--------NVMFIETSAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHT--------TCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred EEEEecccchhhhhhhhHHHHHHHHHHc--------CCEEEEecCCCCcCHHHHHHHHHHhh
Confidence 9999999998754332 2 233333 34699999999999999999999876
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.2e-24 Score=132.94 Aligned_cols=130 Identities=21% Similarity=0.295 Sum_probs=101.4
Q ss_pred CCCcccceeeE--EEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||.+..+.. +.. ..+.+.+||++|++.+...+..++++++++++|+|.++.++++....|...+.+. ..+++|
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~ 113 (170)
T d1r2qa_ 35 QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ-ASPNIV 113 (170)
T ss_dssp CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCE
T ss_pred cccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhc-cCCCce
Confidence 35778866554 223 3588999999999999999999999999999999999999999988888877553 236799
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+...+.+ .+....+.. ...+.|++|||++|+||+++|.+|++.+.+
T Consensus 114 iilvgnK~Dl~~~~~v~~e~~~~~~~----~~~~~~~e~SAk~g~~V~e~f~~l~~~i~~ 169 (170)
T d1r2qa_ 114 IALSGNKADLANKRAVDFQEAQSYAD----DNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred EEeecccccccccccccHHHHHHHHH----hcCCEEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999998765432 111222211 123469999999999999999999998764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.1e-24 Score=135.13 Aligned_cols=112 Identities=21% Similarity=0.419 Sum_probs=95.3
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
.+++.+|||+|++.++.++..++++++++++|+|+++..+++.+..|+..+.........|+++|+||+|+...+.+
T Consensus 63 ~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~ 142 (186)
T d2f7sa1 63 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 142 (186)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred eEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHH
Confidence 37899999999999999999999999999999999999999999999887776655677899999999999765432
Q ss_pred --HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 93 --EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 93 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++...++ +.+++|||++|+|++++|++|++.+.+
T Consensus 143 e~~~~~~~~~--------~~~~e~Sak~~~~i~e~f~~l~~~i~~ 179 (186)
T d2f7sa1 143 QARELADKYG--------IPYFETSAATGQNVEKAVETLLDLIMK 179 (186)
T ss_dssp HHHHHHHHTT--------CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 23333333 359999999999999999999998765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.4e-24 Score=131.78 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=96.8
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.|+.+..+. .+. +..+.+.+||++|++.+..++..+++++|++++|+|+++.++++....|+..+.+. .....|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i 112 (166)
T d1z0fa1 34 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVI 112 (166)
T ss_dssp TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred cccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhh-ccccceE
Confidence 355554433 233 34579999999999999999999999999999999999999999988888877653 3367899
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
++++||+|+...... . .+.... ++++++|||++|+||+++|.+|++.+
T Consensus 113 ilvgnK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~e~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 113 ILIGNKADLEAQRDVTYEEAKQFAEEN--------GLLFLEASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHT--------TCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEcccccchhhcccHHHHHHHHHHHc--------CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999998654332 2 222222 34699999999999999999999875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.9e-24 Score=134.62 Aligned_cols=126 Identities=25% Similarity=0.352 Sum_probs=94.0
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..... +. +..+.+.+||++|++.+..+++.+++++|++++|+|++++++++.+..|+..+.... ....|
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~ 110 (167)
T d1z08a1 32 HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEIC 110 (167)
T ss_dssp CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSE
T ss_pred cccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccc-ccccc
Confidence 46788855543 33 335899999999999999999999999999999999999999999998887765432 25689
Q ss_pred EEEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.+.+ . .+...+ ++++++|||++|.||+++|.+|++.+.+
T Consensus 111 ~ilvgnK~Dl~~~~~v~~~e~~~~a~~~--------~~~~~e~Sak~~~~v~e~F~~l~~~i~~ 166 (167)
T d1z08a1 111 LCIVGNKIDLEKERHVSIQEAESYAESV--------GAKHYHTSAKQNKGIEELFLDLCKRMIE 166 (167)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHHHT--------TCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred eeeeccccccccccccchHHHHHHHHHc--------CCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence 9999999998765442 2 233333 3469999999999999999999998764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.1e-23 Score=131.90 Aligned_cols=130 Identities=19% Similarity=0.255 Sum_probs=100.4
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||.+..... +. .+...+.+|||||++++..+++.+++.++++++|+|.++.+++..+..|+..+.... ..++|
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 112 (174)
T d2bmea1 34 SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIV 112 (174)
T ss_dssp CCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCE
T ss_pred cccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhccccccc-CCceE
Confidence 35677755443 32 345789999999999999999999999999999999999999999888888876543 36799
Q ss_pred EEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+...... ......+.. ..++++++|||++|+|++++|.++++.+.+
T Consensus 113 iivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~ 168 (174)
T d2bmea1 113 IILCGNKKDLDADREVTFLEASRFAQ----ENELMFLETSALTGENVEEAFVQCARKILN 168 (174)
T ss_dssp EEEEEECGGGGGGCCSCHHHHHHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEecccccchhchhhhHHHHHHH----hCCCEEEEeeCCCCcCHHHHHHHHHHHHHH
Confidence 9999999998654332 112222211 123469999999999999999999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.9e-23 Score=130.35 Aligned_cols=125 Identities=27% Similarity=0.466 Sum_probs=92.2
Q ss_pred CCcccceeeE--EEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNMRK--VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~~~--~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.||++.++.. +..+ .+.+++|||+|++++..++..+++++|++++|+|+++..++.....|........ ....|+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i 115 (170)
T d2g6ba1 37 ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVAL 115 (170)
T ss_dssp CCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred cceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhcc-CCCceE
Confidence 4667766654 3333 4788999999999999999999999999999999999999998888877665543 257899
Q ss_pred EEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|..+.... . ......+ ++++++||++|+||+++|.+|++.+.+
T Consensus 116 ilv~~k~d~~~~~~v~~~~~~~~~~~~~--------~~~~e~Sak~g~gi~e~f~~l~~~i~k 170 (170)
T d2g6ba1 116 MLLGNKVDSAHERVVKREDGEKLAKEYG--------LPFMETSAKTGLNVDLAFTAIAKELKR 170 (170)
T ss_dssp EEEEECCSTTSCCCSCHHHHHHHHHHHT--------CCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEEeeechhhcccccHHHHHHHHHHcC--------CEEEEEeCCCCcCHHHHHHHHHHHcCC
Confidence 999999998775442 2 2333333 359999999999999999999998763
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.8e-24 Score=137.41 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=97.6
Q ss_pred CCCcccceeeE---EEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~---~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..... +.++.+.+.+||++|++++...+..+++++|++++|||+++++|++.+..|........ ..++|+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i 110 (191)
T d2ngra_ 32 YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPF 110 (191)
T ss_dssp CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCCE
T ss_pred cCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhc-CCCCce
Confidence 46888855543 22345789999999999999999999999999999999999999999876554444332 357999
Q ss_pred EEEeeCCCCCCCCCHH-----------------HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKE-----------------DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++++||+|+.+..... ++...++ .+.|++|||++|.||+++|+.+++.+.+
T Consensus 111 ~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SAk~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 111 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK-------AVKYVECSALTQKGLKNVFDEAILAALE 178 (191)
T ss_dssp EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTT-------CSCEEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred EEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcC-------CCeEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence 9999999986432111 1222221 3459999999999999999999987764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=2e-23 Score=129.96 Aligned_cols=125 Identities=22% Similarity=0.324 Sum_probs=99.4
Q ss_pred CCCcccceeeE--EEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||.+..... ... ....+.+||++|++++..++..+++.++++++|+|++++++++.+..|...+.... ..+.|
T Consensus 33 ~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ 111 (167)
T d1z0ja1 33 INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIV 111 (167)
T ss_dssp CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSE
T ss_pred cccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhcc-CCcce
Confidence 35777755543 222 34677899999999999999999999999999999999999999988887765543 36799
Q ss_pred EEEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++|+||+|+.+.+.. . ++...+ +++|++|||++|+||+++|.+|++.+.
T Consensus 112 iilvgnK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 112 VAIAGNKCDLTDVREVMERDAKDYADSI--------HAIFVETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHT--------TCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEecccchhccccchhHHHHHHHHHHc--------CCEEEEEecCCCCCHHHHHHHHHHhCC
Confidence 9999999999765432 2 233333 346999999999999999999998863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.90 E-value=2.7e-22 Score=123.31 Aligned_cols=127 Identities=28% Similarity=0.611 Sum_probs=110.1
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
......+...+++.+||++|...+...+..+++.++++++++|.++..++.....+...+.........|+++++||.|+
T Consensus 34 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~ 113 (160)
T d1r8sa_ 34 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113 (160)
T ss_dssp CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred eEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccc
Confidence 44556778899999999999999999999999999999999999999999998888888887666678999999999999
Q ss_pred CCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 87 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.......++.............+++++|||++|+|++++|++|++.+
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp TTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 88777777766665555556678899999999999999999999864
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=9.6e-24 Score=134.36 Aligned_cols=129 Identities=23% Similarity=0.359 Sum_probs=100.4
Q ss_pred CCCcccceeeE--EE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~~--~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+.. +. +..+.+.+|||||++++..++..+++.++++++|+|+++..++.....+...+.+. ...++|
T Consensus 35 ~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~ 113 (194)
T d2bcgy1 35 YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVL 113 (194)
T ss_dssp CCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCE
T ss_pred cCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhc-ccCCce
Confidence 46888865543 33 45688999999999999999999999999999999999999999888877766543 237799
Q ss_pred EEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++++||+|+.+.... ........ ..++.++++||++|.|++++|+++++.+.+
T Consensus 114 iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 114 KLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVEDAFLTMARQIKE 169 (194)
T ss_dssp EEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEeccccccccchhHHHHhhhhh-----ccCcceEEEecCcCccHHHHHHHHHHHHHH
Confidence 9999999999765432 21111111 113459999999999999999999988754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.3e-24 Score=136.08 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=98.0
Q ss_pred CCCcccceeeE-E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~~-~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++..... + +.+.+.+.+||++|++.+..++..+++.++++++|+|+++.++++.+..|.....+.. ..++|+
T Consensus 34 ~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~pi 112 (183)
T d1mh1a_ 34 YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPI 112 (183)
T ss_dssp CCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCE
T ss_pred cccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCCCcE
Confidence 46888855442 3 3455888999999999999999999999999999999999999998876444443322 357899
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCC----------CCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSI----------TDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+||+|+...+.............. ....+.|++|||++|+||+++|..+++.+..
T Consensus 113 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~ 180 (183)
T d1mh1a_ 113 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (183)
T ss_dssp EEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcC
Confidence 999999998654322111111111000 0123579999999999999999999998763
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=2.2e-23 Score=130.47 Aligned_cols=128 Identities=26% Similarity=0.469 Sum_probs=88.3
Q ss_pred CCcccceeeEEE-----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC---CCCC
Q 032598 2 IPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLN 73 (137)
Q Consensus 2 ~pt~~~~~~~~~-----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~ 73 (137)
.||.+....... .....+.+|||+|++.+...+..+++.++++++|+|+++..+++.+..|+..+... ....
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 111 (175)
T d1ky3a_ 32 KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 111 (175)
T ss_dssp ---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTT
T ss_pred CcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccc
Confidence 466664443322 23478999999999999999999999999999999999999999999998877643 2335
Q ss_pred CCcEEEEeeCCCCCCCCC---H---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 74 GIPLLVLGNKIDKPEALS---K---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+++++||+|+.+... . .++...++ .+++++|||++|.||+++|++|++.+.++
T Consensus 112 ~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-------~~~~~e~SA~~g~gv~e~f~~l~~~~l~~ 173 (175)
T d1ky3a_ 112 TFPFVILGNKIDAEESKKIVSEKSAQELAKSLG-------DIPLFLTSAKNAINVDTAFEEIARSALQQ 173 (175)
T ss_dssp TCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT-------SCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCcEEEEecccchhhhhcchhHHHHHHHHHHcC-------CCeEEEEeCCCCcCHHHHHHHHHHHHHhc
Confidence 789999999999875422 1 12333332 23599999999999999999999988764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2e-23 Score=131.06 Aligned_cols=117 Identities=22% Similarity=0.338 Sum_probs=96.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-H
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-E 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~ 93 (137)
..+++.+|||||++++..+++.++++++++++|+|+++..+++....|+..+.........|+++++||.|....... .
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~ 133 (177)
T d1x3sa1 54 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRN 133 (177)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHH
T ss_pred cccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHH
Confidence 457899999999999999999999999999999999999999999999999877666678999999999998654332 2
Q ss_pred HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 94 DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+.....+. .+++++++||++|+|++++|+++++.+.+.
T Consensus 134 ~~~~~~~~-----~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~ 171 (177)
T d1x3sa1 134 EGLKFARK-----HSMLFIEASAKTCDGVQCAFEELVEKIIQT 171 (177)
T ss_dssp HHHHHHHH-----TTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH-----CCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence 22221111 134699999999999999999999988754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2e-23 Score=130.84 Aligned_cols=128 Identities=20% Similarity=0.323 Sum_probs=97.7
Q ss_pred CCccccee--eEEEe--CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 2 IPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 2 ~pt~~~~~--~~~~~--~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.|+.+... ..+.. ..+.+.+||++|++++...+..+++.++++++|+|.++++++.....|+..+.+... .++|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~-~~~pi 112 (175)
T d2f9la1 34 KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVI 112 (175)
T ss_dssp -CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE
T ss_pred cccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcC-CCCcE
Confidence 45555333 33443 347899999999999999999999999999999999999999999999888866433 67999
Q ss_pred EEEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 78 LVLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
++|+||+|+.+..... +....+.. .....+++|||++|+|++++|+++++.+.
T Consensus 113 ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~ 166 (175)
T d2f9la1 113 MLVGNKSDLRHLRAVPTDEARAFAE----KNNLSFIETSALDSTNVEEAFKNILTEIY 166 (175)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHH----HTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeecccccccchHHHHHHhhc----ccCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 9999999997653321 11111110 11346999999999999999999998764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.5e-24 Score=135.38 Aligned_cols=125 Identities=26% Similarity=0.387 Sum_probs=99.2
Q ss_pred CCCcccceee--EEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||+|.++. .+..+ .+.+.+||++|++.+..+++.+++.+|++++|||++++.+++.+..|....... .....|
T Consensus 32 ~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~ 110 (170)
T d1ek0a_ 32 KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ-ASKDII 110 (170)
T ss_dssp CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCE
T ss_pred ccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccc-cccccc
Confidence 4688886553 45443 488999999999999999999999999999999999999999998887766543 236789
Q ss_pred EEEEeeCCCCCCCC-----CHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 77 LLVLGNKIDKPEAL-----SKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 77 ~ivv~nK~D~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+++++||+|+.+.. ... ++.+.. +++|++|||++|.||+++|.+|++.+.
T Consensus 111 ~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~--------~~~~~e~Sak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 111 IALVGNKIDMLQEGGERKVAREEGEKLAEEK--------GLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp EEEEEECGGGGGSSCCCCSCHHHHHHHHHHH--------TCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred eeeeecccccccccchhhhhHHHHHHHHHHc--------CCEEEEecCCCCcCHHHHHHHHHHHhc
Confidence 99999999985431 112 233333 346999999999999999999998764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=4e-24 Score=134.61 Aligned_cols=128 Identities=18% Similarity=0.258 Sum_probs=97.2
Q ss_pred CCCcccceee-EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 1 MIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 1 ~~pt~~~~~~-~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
+.||++.... .+. ++.+.+.+||++|++.+...++.++++++++++|||+++.+|++.+..|........ ..++|+
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i 109 (179)
T d1m7ba_ 31 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKM 109 (179)
T ss_dssp CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEE
T ss_pred cCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhcc-CCcceE
Confidence 4688874333 233 456899999999999999999999999999999999999999998877655544332 258999
Q ss_pred EEEeeCCCCCCCCC--------------H---HHHHHHhCCCCCCCCceeEEEeecccCCC-hHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--------------K---EDLMEQMGLKSITDREVCCYMISCKNSTN-IDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--------------~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~~~~~i~~~~~~~ 136 (137)
++|+||+|+..... . ..+...++ .+.|++|||++|+| ++++|+.+++.+.++
T Consensus 110 ilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-------~~~y~E~SAk~~~n~i~~~F~~~~~~~l~k 179 (179)
T d1m7ba_ 110 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------AATYIECSALQSENSVRDIFHVATLACVNK 179 (179)
T ss_dssp EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------CSEEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhC-------CCeEEEEeCCCCCcCHHHHHHHHHHHHhcC
Confidence 99999999864211 1 12222222 23699999999984 999999999988754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.1e-23 Score=131.00 Aligned_cols=131 Identities=25% Similarity=0.394 Sum_probs=97.3
Q ss_pred CCCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 1 MIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 1 ~~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
+.||++..+. .+. +..+.+.+|||||++.+..++..++++++++++|+|.+++++++.+..|........ ....|
T Consensus 31 ~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~ 109 (166)
T d1g16a_ 31 FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQ 109 (166)
T ss_dssp ------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCE
T ss_pred cCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccc-cCcce
Confidence 3688885554 344 345788899999999999999999999999999999999999888887766665542 36788
Q ss_pred EEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 77 LLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++++||.|+.......+....+.. ..++++++|||++|+|++++|++|++.+.++
T Consensus 110 ~i~~~~k~d~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k 165 (166)
T d1g16a_ 110 LLLVGNKSDMETRVVTADQGEALAK----ELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165 (166)
T ss_dssp EEEEEECTTCTTCCSCHHHHHHHHH----HHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred eeeecchhhhhhhhhhHHHHHHHHH----hcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999998765443333332221 1134599999999999999999999998764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1e-23 Score=131.86 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=94.2
Q ss_pred Ccccceee--EEE--eCCEEEEEEecCC---ccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCC
Q 032598 3 PTVGFNMR--KVT--KGNVTIKLWDLGG---QPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGI 75 (137)
Q Consensus 3 pt~~~~~~--~~~--~~~~~~~~~Dt~g---~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
||++.+.. .+. +..+.+.+||+++ ++++ ++..+++.+|++++|||+++..+++.+..|...+.......++
T Consensus 35 ~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~ 112 (172)
T d2g3ya1 35 EVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 112 (172)
T ss_dssp --CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTS
T ss_pred cceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCc
Confidence 45554332 333 3457788999765 4444 5567789999999999999999999999998888766555689
Q ss_pred cEEEEeeCCCCCCCCCH--H---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 76 PLLVLGNKIDKPEALSK--E---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 76 p~ivv~nK~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
|+++++||+|+...+.+ . .+...++ +++++|||++|+|++++|.+|++.+..+|
T Consensus 113 piilvgnK~Dl~~~~~v~~~~~~~~a~~~~--------~~~~e~Sak~g~~i~~~f~~l~~~i~~rr 171 (172)
T d2g3ya1 113 PIILVGNKSDLVRCREVSVSEGRACAVVFD--------CKFIETSAAVQHNVKELFEGIVRQVRLRR 171 (172)
T ss_dssp CEEEEEECTTCGGGCCSCHHHHHHHHHHHT--------CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred eEEEEeccccccccccccHHHHHHHHHHcC--------CeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence 99999999998765432 2 2333333 46999999999999999999999987664
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=9.9e-24 Score=132.02 Aligned_cols=129 Identities=22% Similarity=0.400 Sum_probs=85.0
Q ss_pred Cccccee--eEEEeC--CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 3 PTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 3 pt~~~~~--~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
||++..+ ..+..+ .+.+.+|||||++.+..++..++++++++++|+|++++.++..+..|...+... ...+.|++
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~ii 115 (173)
T d2fu5c1 37 STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKM 115 (173)
T ss_dssp HHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEE
T ss_pred ccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhh-ccCCceEE
Confidence 5566333 334443 478899999999999999999999999999999999999999988888777543 34679999
Q ss_pred EEeeCCCCCCCCCHH-HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 79 VLGNKIDKPEALSKE-DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 79 vv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
+++||.|+....... +....+. ....+++++|||++|+|++++|.+|++.+.++
T Consensus 116 lv~~k~D~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k 170 (173)
T d2fu5c1 116 ILGNKCDVNDKRQVSKERGEKLA----LDYGIKFMETSAKANINVENAFFTLARDIKAK 170 (173)
T ss_dssp EEEEC--CCSCCCSCHHHHHHHH----HHHTCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred EEEecccchhhcccHHHHHHHHH----HhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999987654321 1111111 01234699999999999999999999988753
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.88 E-value=9.1e-22 Score=123.04 Aligned_cols=133 Identities=27% Similarity=0.524 Sum_probs=111.8
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.|+.+.....+...+.++.+||++|.+..+..+..+++.++++++++|.++..+++....+.............|+++++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 123 (177)
T d1zj6a1 44 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 123 (177)
T ss_dssp ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred ccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEE
Confidence 46667777778888999999999999999999999999999999999999999998887777777666556789999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
||+|+.......++...++......++++++++||++|+|+++++++|++.++
T Consensus 124 nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 124 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp ECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred EcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 99999888777778787776555667889999999999999999999998864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.2e-23 Score=129.65 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=93.5
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK-- 92 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-- 92 (137)
+.+.+.+||++|++.+..+++.+++.+|++++|+|++++.+++....|+..+.... ..++|+++++||+|+......
T Consensus 50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~ 128 (173)
T d2a5ja1 50 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKR 128 (173)
T ss_dssp EEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCH
T ss_pred eEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhhhhHH
Confidence 45889999999999999999999999999999999999999999999988776542 367999999999998654332
Q ss_pred ---HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 93 ---EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
....... ++.++++||++|.||+++|.+|++.+.+
T Consensus 129 ~~~~~~a~~~--------~~~~~e~Sa~tg~~V~e~f~~i~~~i~~ 166 (173)
T d2a5ja1 129 EEGEAFAREH--------GLIFMETSAKTACNVEEAFINTAKEIYR 166 (173)
T ss_dssp HHHHHHHHHH--------TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2233333 3469999999999999999999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=1.5e-23 Score=132.31 Aligned_cols=132 Identities=21% Similarity=0.350 Sum_probs=101.7
Q ss_pred CCCcccceeeEEE----eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCC---CCC
Q 032598 1 MIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKP---SLN 73 (137)
Q Consensus 1 ~~pt~~~~~~~~~----~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~ 73 (137)
+.||++.+..... +..+.+.+||++|.......+..++..++++++++|.++..+++.+..|+..+.... ...
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 110 (184)
T d1vg8a_ 31 YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 110 (184)
T ss_dssp CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGG
T ss_pred cCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhcccccc
Confidence 4688886665432 345889999999999999999999999999999999999989999888988776532 234
Q ss_pred CCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 74 GIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
++|+++|+||+|+.+.....+....+... ...+.+++|||++|+||+++|+++++.+.+
T Consensus 111 ~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~ 169 (184)
T d1vg8a_ 111 NFPFVVLGNKIDLENRQVATKRAQAWCYS---KNNIPYFETSAKEAINVEQAFQTIARNALK 169 (184)
T ss_dssp GSCEEEEEECTTSSCCCSCHHHHHHHHHH---TTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeecccccchhHHHHHHHHHH---hcCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence 68999999999987654333222222100 123469999999999999999999988765
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2e-22 Score=126.37 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=90.6
Q ss_pred CCcccceeeE-E--EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC--CCCCCCc
Q 032598 2 IPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK--PSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~~-~--~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p 76 (137)
.||.+..+.+ + +++.+.+.+|||+|+..+ .+++++|++++|||+++.+|++.+..|...+... .....+|
T Consensus 34 ~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~p 108 (175)
T d2bmja1 34 EKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA 108 (175)
T ss_dssp CCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCE
T ss_pred CCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCcc
Confidence 3555544432 3 345588999999999865 3788999999999999999999998888776532 2346789
Q ss_pred EEEEeeCCCCCCCC--C--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 77 LLVLGNKIDKPEAL--S--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 77 ~ivv~nK~D~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+++|+||.|+.... . ..+....... ...+.|++|||++|.|++++|..+++.+.+
T Consensus 109 i~lV~~k~d~d~~~~~~v~~~~~~~~~~~----~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 167 (175)
T d2bmja1 109 LALVGTQDRISASSPRVVGDARARALCAD----MKRCSYYETCATYGLNVDRVFQEVAQKVVT 167 (175)
T ss_dssp EEEEEECTTCCSSSCCCSCHHHHHHHHHT----STTEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEEeeecCcchhhhcchhHHHHHHHHHH----hCCCeEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 99999998875432 2 1222221111 234579999999999999999999988764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=8.9e-22 Score=123.09 Aligned_cols=127 Identities=24% Similarity=0.406 Sum_probs=96.5
Q ss_pred CCcccceee--EEE--eCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcC---CCCCC
Q 032598 2 IPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSK---PSLNG 74 (137)
Q Consensus 2 ~pt~~~~~~--~~~--~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~ 74 (137)
.||++.... .+. ...+.+.+||++|.......+..++..++++++++|.++..+++.+..|+..+... ....+
T Consensus 36 ~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 115 (174)
T d1wmsa_ 36 FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 115 (174)
T ss_dssp --CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTT
T ss_pred ccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCC
Confidence 466764432 222 23588899999999999999999999999999999999999999988888776542 33457
Q ss_pred CcEEEEeeCCCCCCCC-CHHH---HHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 75 IPLLVLGNKIDKPEAL-SKED---LMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+|+++|+||+|+.+.. ...+ +..... .++|++|||++|+||+++|+++++.+.+
T Consensus 116 ~piilVgnK~Dl~~~~v~~~~~~~~~~~~~-------~~~~~e~Sak~~~gI~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 116 FPFVILGNKIDISERQVSTEEAQAWCRDNG-------DYPYFETSAKDATNVAAAFEEAVRRVLA 173 (174)
T ss_dssp SCEEEEEECTTCSSCSSCHHHHHHHHHHTT-------CCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ceEEEeccccchhhccCcHHHHHHHHHHcC-------CCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence 9999999999996532 2222 222221 2359999999999999999999988763
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.86 E-value=3.2e-20 Score=114.69 Aligned_cols=136 Identities=35% Similarity=0.682 Sum_probs=117.7
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||.+........++..+.+||.+|...........+...+++++++|..+..++.....+.............|+++++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~ 113 (169)
T d1upta_ 34 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA 113 (169)
T ss_dssp CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred ecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEE
Confidence 57777777788889999999999999999999999999999999999999988888888777766666556789999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhcC
Q 032598 82 NKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKS 137 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 137 (137)
||.|+.......++...+.........+++++|||++|+||+++|++|++.+.+++
T Consensus 114 nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~k~ 169 (169)
T d1upta_ 114 NKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169 (169)
T ss_dssp ECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTCC
T ss_pred eeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 99999988777777777765555567789999999999999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=1.6e-21 Score=120.87 Aligned_cols=121 Identities=26% Similarity=0.482 Sum_probs=93.1
Q ss_pred CCcccceee--E--EEeCCEEEEEEecCCccccHH-hHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc
Q 032598 2 IPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRS-MWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP 76 (137)
Q Consensus 2 ~pt~~~~~~--~--~~~~~~~~~~~Dt~g~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 76 (137)
.||.+.... . +..+...+.+||++|...+.. .++.+++++|++++|+|++++++++.+..|+..+.+.....++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 111 (165)
T d1z06a1 32 EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 111 (165)
T ss_dssp CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC
T ss_pred CcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCe
Confidence 456663332 2 334568899999999877654 57788999999999999999999999999999887765557899
Q ss_pred EEEEeeCCCCCCCCC--HH---HHHHHhCCCCCCCCceeEEEeeccc---CCChHHHHHHHH
Q 032598 77 LLVLGNKIDKPEALS--KE---DLMEQMGLKSITDREVCCYMISCKN---STNIDTVIDWLV 130 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~i~ 130 (137)
+++++||+|+.+... .. ++.+.++ +++++|||++ ++||+++|.+|+
T Consensus 112 i~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 112 RILVGNKCDLRSAIQVPTDLAQKFADTHS--------MPLFETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHTT--------CCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred EEEEeccccchhccchhHHHHHHHHHHCC--------CEEEEEecccCCcCcCHHHHHHHhC
Confidence 999999999876533 22 2333333 3599999987 569999999874
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=3.4e-20 Score=114.02 Aligned_cols=131 Identities=33% Similarity=0.591 Sum_probs=113.3
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
+.||++.+.......+..+.+||++|...+...+..+++.++++++++|.++..++.....+...........+.|++++
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 107 (166)
T d2qtvb1 28 LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL 107 (166)
T ss_dssp CCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEE
T ss_pred eeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEE
Confidence 46899999999989999999999999999999999999999999999999999888888888877777777788999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCC-------CCCceeEEEeecccCCChHHHHHHHHH
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSI-------TDREVCCYMISCKNSTNIDTVIDWLVK 131 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 131 (137)
+||.|+.......++...+..... ..+.+++++|||++|+|++++|+||++
T Consensus 108 ~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 108 GNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp EECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred eccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence 999999887777777777654322 234678999999999999999999975
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=7e-22 Score=125.55 Aligned_cols=136 Identities=19% Similarity=0.318 Sum_probs=103.7
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCC----------hHHHHHHHHHHhcCC
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN----------LPVSRSELHDLLSKP 70 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~ 70 (137)
+.||+|++...+..+.+.+++||++|++.++..+..+++.++++++++|.++..+ +.+...++..++...
T Consensus 29 ~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~ 108 (200)
T d2bcjq2 29 GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 108 (200)
T ss_dssp CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG
T ss_pred CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhh
Confidence 5799999999999999999999999999999999999999999999999987543 233334444555544
Q ss_pred CCCCCcEEEEeeCCCCCCCC----C--------------HH----HHHHHh-CCCCCCCCceeEEEeecccCCChHHHHH
Q 032598 71 SLNGIPLLVLGNKIDKPEAL----S--------------KE----DLMEQM-GLKSITDREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~~----~--------------~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
...+.|+++++||.|+.... . .. .+...+ .......+.+.+++|||++|+||+++|+
T Consensus 109 ~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~ 188 (200)
T d2bcjq2 109 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 188 (200)
T ss_dssp GGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHH
T ss_pred hccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHH
Confidence 45789999999999974211 0 00 111111 2223345678889999999999999999
Q ss_pred HHHHhhhhc
Q 032598 128 WLVKHSKSK 136 (137)
Q Consensus 128 ~i~~~~~~~ 136 (137)
.+.+.+.++
T Consensus 189 ~i~~~I~~~ 197 (200)
T d2bcjq2 189 AVKDTILQL 197 (200)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=6.7e-22 Score=125.19 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=103.7
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCCh----------HHHHHHHHHHhcCCC
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNL----------PVSRSELHDLLSKPS 71 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~----------~~~~~~~~~~~~~~~ 71 (137)
.||+|++...++.....+++|||+|++.+++.+..+++.++++++|+|.++..++ .+...++..+.....
T Consensus 27 ~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~ 106 (195)
T d1svsa1 27 EAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 106 (195)
T ss_dssp SCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGG
T ss_pred CCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccc
Confidence 5889998889999999999999999999999999999999999999999987654 233344455555555
Q ss_pred CCCCcEEEEeeCCCCCCC-----------------CCHH----HHHHHhCC--CCCCCCceeEEEeecccCCChHHHHHH
Q 032598 72 LNGIPLLVLGNKIDKPEA-----------------LSKE----DLMEQMGL--KSITDREVCCYMISCKNSTNIDTVIDW 128 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~-----------------~~~~----~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 128 (137)
....|+++++||+|+... .... .+...+.. .....+.+++++|||++|+||+++|+.
T Consensus 107 ~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~ 186 (195)
T d1svsa1 107 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 186 (195)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHH
Confidence 578999999999985211 0111 12222221 122345788899999999999999999
Q ss_pred HHHhhhhcC
Q 032598 129 LVKHSKSKS 137 (137)
Q Consensus 129 i~~~~~~~~ 137 (137)
+.+.+.++|
T Consensus 187 v~~~il~~n 195 (195)
T d1svsa1 187 VTDVIIKNN 195 (195)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999988764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=2.7e-20 Score=118.29 Aligned_cols=136 Identities=22% Similarity=0.314 Sum_probs=98.0
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCC----------hHHHHHHHHHHhcCC
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN----------LPVSRSELHDLLSKP 70 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~~~~~~~~~~~~~~ 70 (137)
+.||+|++...++.+...+++||++|++.++..+..+++.++++++++|.++..+ ++....++..+....
T Consensus 28 ~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 107 (200)
T d1zcba2 28 QDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 107 (200)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred CCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhCh
Confidence 5799999999999999999999999999999999999999999999999998654 345556666776666
Q ss_pred CCCCCcEEEEeeCCCCCCC----C--------------CH----HHHHHHhCCC--CCCCCceeEEEeecccCCChHHHH
Q 032598 71 SLNGIPLLVLGNKIDKPEA----L--------------SK----EDLMEQMGLK--SITDREVCCYMISCKNSTNIDTVI 126 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~----~--------------~~----~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~ 126 (137)
...++|+++++||+|+.+. . .. ..+...+... ....+.+.+++|||++++||+++|
T Consensus 108 ~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf 187 (200)
T d1zcba2 108 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 187 (200)
T ss_dssp GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred hhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHH
Confidence 6678999999999997421 0 11 1122222211 122345678899999999999999
Q ss_pred HHHHHhhhhc
Q 032598 127 DWLVKHSKSK 136 (137)
Q Consensus 127 ~~i~~~~~~~ 136 (137)
+.+.+.+.++
T Consensus 188 ~~v~d~i~~~ 197 (200)
T d1zcba2 188 RDVKDTILHD 197 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.81 E-value=4.4e-19 Score=111.01 Aligned_cols=132 Identities=33% Similarity=0.623 Sum_probs=106.0
Q ss_pred CCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 2 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 2 ~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
.||.+.+...+..++..+..||++++..+...+..+.+..+++++++|.++.........+...........++|+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 121 (186)
T d1f6ba_ 42 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121 (186)
T ss_dssp -CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEE
T ss_pred ecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEE
Confidence 57888888889999999999999999999888899999999999999999988888777766666665556789999999
Q ss_pred eCCCCCCCCCHHHHHHHhCCC------------CCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 82 NKIDKPEALSKEDLMEQMGLK------------SITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 82 nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
||.|+........+...+... ....+.+++++|||++|+|++++|+||++.+
T Consensus 122 ~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp ECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred eccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 999998877766666555432 1123457899999999999999999999876
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.79 E-value=5.3e-20 Score=119.07 Aligned_cols=135 Identities=19% Similarity=0.263 Sum_probs=103.9
Q ss_pred CCCcccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC----------ChHHHHHHHHHHhcCC
Q 032598 1 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD----------NLPVSRSELHDLLSKP 70 (137)
Q Consensus 1 ~~pt~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 70 (137)
+.||+|++...++.+++.+++||++|++.++..|..+++.++++++|+|.++.. ...+...++..+....
T Consensus 31 ~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~ 110 (221)
T d1azta2 31 VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 110 (221)
T ss_dssp CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCG
T ss_pred cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcCh
Confidence 469999999999999999999999999999999999999999999999998643 2445556677777776
Q ss_pred CCCCCcEEEEeeCCCCCCC------CCHH----------------------------------HHHHHhCCCCCCCCcee
Q 032598 71 SLNGIPLLVLGNKIDKPEA------LSKE----------------------------------DLMEQMGLKSITDREVC 110 (137)
Q Consensus 71 ~~~~~p~ivv~nK~D~~~~------~~~~----------------------------------~~~~~~~~~~~~~~~~~ 110 (137)
...++|++|++||+|+.+. .... .+.+.........+.+.
T Consensus 111 ~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y 190 (221)
T d1azta2 111 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCY 190 (221)
T ss_dssp GGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEE
T ss_pred hhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCcee
Confidence 6678999999999997432 1110 11111112222234577
Q ss_pred EEEeecccCCChHHHHHHHHHhhhh
Q 032598 111 CYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 111 ~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.++|||++++|++.+|+.+.+.+.+
T Consensus 191 ~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 191 PHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp EEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred eeecceeccHHHHHHHHHHHHHHHH
Confidence 8899999999999999998877764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1.9e-17 Score=103.47 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=80.9
Q ss_pred ceeeEEEeCCEEEEEEecCCcccc--------HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~--------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
.........+.++.+|||||.... ......+++.||++++|+|+++..... ..++...++.. ..++|++
T Consensus 43 ~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~--~~~i~~~l~~~-~~~~pii 119 (178)
T d1wf3a1 43 RLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPIL 119 (178)
T ss_dssp CEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEE
T ss_pred cccceeeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhccc--ccchhhheecc-ccchhhh
Confidence 444456678899999999997443 223334578899999999998865433 23333333321 2568999
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+|+||+|+.... .+..+.+... .....++++||++|+|+++++++|.+.+-
T Consensus 120 lv~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~~iSA~~~~gi~~L~~~i~~~lp 170 (178)
T d1wf3a1 120 LVGNKLDAAKYP--EEAMKAYHEL---LPEAEPRMLSALDERQVAELKADLLALMP 170 (178)
T ss_dssp EEEECGGGCSSH--HHHHHHHHHT---STTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred hhhcccccccCH--HHHHHHHHhh---cccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 999999996542 2222222110 01235889999999999999999998764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.70 E-value=9e-17 Score=100.55 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=87.1
Q ss_pred eEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 032598 10 RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEA 89 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 89 (137)
..+...+..+.++|+||+.++.......+..+|++++|+|+++....+.. .....+. ..++|+++++||+|+...
T Consensus 52 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~-~~~~~~~----~~~~p~iiv~NKiD~~~~ 126 (179)
T d1wb1a4 52 SAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTG-EHMLILD----HFNIPIIVVITKSDNAGT 126 (179)
T ss_dssp CEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHH-HHHHHHH----HTTCCBCEEEECTTSSCH
T ss_pred cccccCCccccccccccccccccchhhhhhhccccccccccccccchhhh-hhhhhhh----hcCCcceeccccccccCH
Confidence 34566789999999999999999889999999999999999986544332 2222222 257899999999999765
Q ss_pred CCHH---HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 90 LSKE---DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 90 ~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
.... +..+.+..........+++++||++|+|++++++.|.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 127 EEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp HHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence 3321 222222111112234568999999999999999999987753
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.8e-16 Score=97.25 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=82.7
Q ss_pred eeEEEeCCEEEEEEecCCccccH--------HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~--------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
...+...+..+.+||+||..... .....++..+|++++++|..+..++.....|...+... ..++|+++|
T Consensus 41 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv 118 (161)
T d2gj8a1 41 REHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVV 118 (161)
T ss_dssp EEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEE
T ss_pred eeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhc--ccccceeec
Confidence 34567788999999999964321 22344578899999999999988777666554444333 247999999
Q ss_pred eeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 81 GNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 81 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
+||+|+.+..... . ......++++||++|+|+++++++|++.+
T Consensus 119 ~NK~Dl~~~~~~~---~-------~~~~~~~~~iSAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 119 RNKADITGETLGM---S-------EVNGHALIRLSARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp EECHHHHCCCCEE---E-------EETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred cchhhhhhhHHHH---H-------HhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence 9999986543211 0 11245799999999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=4.5e-16 Score=97.24 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=78.8
Q ss_pred eCCEEEEEEecCCcccc-------HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhc-CCCCCCCcEEEEeeCCC
Q 032598 14 KGNVTIKLWDLGGQPRF-------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLS-KPSLNGIPLLVLGNKID 85 (137)
Q Consensus 14 ~~~~~~~~~Dt~g~~~~-------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D 85 (137)
..+..+.+|||||.... .......+..++.+++++|..... ......+...+.. .....++|+++++||+|
T Consensus 46 ~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D 124 (180)
T d1udxa2 46 SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVD 124 (180)
T ss_dssp SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCT
T ss_pred cCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhh
Confidence 35678999999995322 123345578899999999987532 2222222222211 11123589999999999
Q ss_pred CCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 86 KPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
+........+.+.+... +.+++++||++|+|++++++.|.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~-----~~~~~~iSA~tg~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 125 LLEEEAVKALADALARE-----GLAVLPVSALTGAGLPALKEALHALVRS 169 (180)
T ss_dssp TSCHHHHHHHHHHHHTT-----TSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHhc-----CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 98765555555555432 4469999999999999999999988764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=1.6e-14 Score=88.31 Aligned_cols=112 Identities=13% Similarity=0.198 Sum_probs=83.1
Q ss_pred eeeEEEeCCEEEEEEecCCccc--------c-HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPR--------F-RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL 78 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~--------~-~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 78 (137)
....+...+..+.+|||||... . .......++.+|++++|+|++++...+....+ ..+ ...|++
T Consensus 39 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~-~~~------~~~~~i 111 (160)
T d1xzpa2 39 ISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYL 111 (160)
T ss_dssp CCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEE
T ss_pred eeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhh-hhc------ccccce
Confidence 3445777899999999999421 1 12223346789999999999998765543222 122 457899
Q ss_pred EEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHh
Q 032598 79 VLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKH 132 (137)
Q Consensus 79 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 132 (137)
+++||.|+.+......+...++. ..+++++||++|+|+++|+++|.+.
T Consensus 112 ~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~~g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 112 VVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGEGLEKLEESIYRE 159 (160)
T ss_dssp EEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred eeeeeccccchhhhHHHHHHhCC------CCcEEEEECCCCCCHHHHHHHHHhc
Confidence 99999999988887777777763 2358999999999999999998764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=1.4e-15 Score=94.23 Aligned_cols=120 Identities=19% Similarity=0.138 Sum_probs=81.5
Q ss_pred ceeeEEEeCCEEEEEEecCCccc---------cHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
.....+......+.+||++|... ........+..+|.++++.|.++...... ..+...+.. .++|+
T Consensus 38 ~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~----~~~pv 112 (171)
T d1mkya1 38 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRK----STVDT 112 (171)
T ss_dssp CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH----HTCCE
T ss_pred cccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-ccccccccc----ccccc
Confidence 44456778899999999999421 22344455788999999999987655433 233333322 46899
Q ss_pred EEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+..........+..+.. ...++++||++|.|+++++++|.+.+.++
T Consensus 113 iiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~i~iSAk~g~gid~L~~~i~~~l~e~ 166 (171)
T d1mkya1 113 ILVANKAENLREFEREVKPELYSLG-----FGEPIPVSAEHNINLDTMLETIIKKLEEK 166 (171)
T ss_dssp EEEEESCCSHHHHHHHTHHHHGGGS-----SCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhhhhhhHHHHHHHhcC-----CCCeEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 9999999986432222222222211 12468999999999999999999988654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.64 E-value=3.9e-16 Score=98.84 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=79.8
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
..+++++||||+.+|.......+..+|++++|+|+.+.....+..+.+..+... .-.+++++.||+|+.+....
T Consensus 77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~ 153 (195)
T d1kk1a3 77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALEN 153 (195)
T ss_dssp EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHH
Confidence 467999999999999999888899999999999999864333333333222221 22457888999999764322
Q ss_pred -HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 -EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
..+.+.+. ......++++++||++|+|+++|++.+.+.+
T Consensus 154 ~~~~~~~~~--~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 154 YRQIKEFIE--GTVAENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp HHHHHHHHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhc--cccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 22233332 1223456799999999999999999988754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.64 E-value=7.9e-16 Score=98.13 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=79.8
Q ss_pred EEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---
Q 032598 17 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE--- 93 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--- 93 (137)
..+++.||||+.+|.......+..+|++++|+|+.+.-...+....+..+... .-.|++++.||+|+.+.....
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence 57899999999999988888899999999999998853222222233222221 225789999999997643322
Q ss_pred -HHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 -DLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.+...+. .....+++++++||++|.|++++++.|.+.+
T Consensus 163 ~~~~~~l~--~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i 201 (205)
T d2qn6a3 163 RQIKQFTK--GTWAENVPIIPVSALHKINIDSLIEGIEEYI 201 (205)
T ss_dssp HHHHHHHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHhc--cccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence 2222222 2223467899999999999999999988765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.60 E-value=2.7e-15 Score=97.04 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=80.6
Q ss_pred EeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 032598 13 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK 92 (137)
Q Consensus 13 ~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 92 (137)
..++.++.++||||+..|.......+..+|++++|+|+.+.-..+.. ..+..+.. .++|+++++||+|+......
T Consensus 66 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~----~~~p~iivlNK~D~~~~~~~ 140 (227)
T d1g7sa4 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM----YRTPFVVAANKIDRIHGWRV 140 (227)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSTTCCC
T ss_pred cccccccccccccceecccccchhcccccceEEEEEecccCcccchh-HHHHHhhc----CCCeEEEEEECccCCCchhh
Confidence 45567899999999999887777778899999999999875443332 22223322 57899999999998654311
Q ss_pred ---HH----------------------HHHHhCC----------CCCCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 93 ---ED----------------------LMEQMGL----------KSITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 93 ---~~----------------------~~~~~~~----------~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
.. ....+.. ........+++++||++|.|+++|++.|.....
T Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~ 217 (227)
T d1g7sa4 141 HEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (227)
T ss_dssp CTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00 0000000 001123467899999999999999999987664
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.60 E-value=2.5e-15 Score=95.11 Aligned_cols=122 Identities=13% Similarity=0.013 Sum_probs=85.4
Q ss_pred eeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....+...+..++++||||+..|...+...++.+|++++|+|+.+....+ ..+.+..+... ...|++++.||+|+.
T Consensus 57 ~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~---~~~~iIv~iNK~D~~ 132 (196)
T d1d2ea3 57 AHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI---GVEHVVVYVNKADAV 132 (196)
T ss_dssp EEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCCEEEEEECGGGC
T ss_pred ceEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHh---cCCcEEEEEeccccc
Confidence 33456778899999999999999998888899999999999999864332 22333333222 335789999999987
Q ss_pred CCCCH-----HHHHHHhCCCCCCCCceeEEEeecccC----------CChHHHHHHHHHhh
Q 032598 88 EALSK-----EDLMEQMGLKSITDREVCCYMISCKNS----------TNIDTVIDWLVKHS 133 (137)
Q Consensus 88 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~~~~~i~~~~ 133 (137)
..... .++.+.+..........+++++||++| +|+.++++.+.+.+
T Consensus 133 ~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i 193 (196)
T d1d2ea3 133 QDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence 53221 123333332233334577999999998 58899998887653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=1.7e-14 Score=91.82 Aligned_cols=131 Identities=23% Similarity=0.277 Sum_probs=87.5
Q ss_pred CCcccceeeEEEe---CCEEEEEEecCCccccH-HhHHHHhccCCEEEEEEeCCCCCC-hHHHHHHHHHHhcC--CCCCC
Q 032598 2 IPTVGFNMRKVTK---GNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADYDN-LPVSRSELHDLLSK--PSLNG 74 (137)
Q Consensus 2 ~pt~~~~~~~~~~---~~~~~~~~Dt~g~~~~~-~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~--~~~~~ 74 (137)
.||++.+...+.. .+..+.+||++|+++++ ..+..+++.++++++|+|+++..+ +.....++..++.. .....
T Consensus 29 ~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~ 108 (207)
T d2fh5b1 29 QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS 108 (207)
T ss_dssp CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcC
Confidence 5788877776653 46889999999999885 567888899999999999998544 33444444444321 22356
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHHHhCC-----------------------CCC-----------CCCceeEEEeecccCC
Q 032598 75 IPLLVLGNKIDKPEALSKEDLMEQMGL-----------------------KSI-----------TDREVCCYMISCKNST 120 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~~~~~~~~~~~~~-----------------------~~~-----------~~~~~~~~~~Sa~~~~ 120 (137)
+|+++++||+|+....+..++.+.+.. ... ......++++|++.|.
T Consensus 109 ~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~ 188 (207)
T d2fh5b1 109 PSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGR 188 (207)
T ss_dssp CEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC---
T ss_pred CcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhhcccchhhhHHhccCCcEEEEeeecCCC
Confidence 899999999999877665444332200 000 0124568999999998
Q ss_pred C------hHHHHHHHHHh
Q 032598 121 N------IDTVIDWLVKH 132 (137)
Q Consensus 121 ~------v~~~~~~i~~~ 132 (137)
+ ++++-+|+.+.
T Consensus 189 ~~~~~~~i~~~~~wl~~~ 206 (207)
T d2fh5b1 189 GDTGSADIQDLEKWLAKI 206 (207)
T ss_dssp ----CCBCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHh
Confidence 7 78888887654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.58 E-value=9e-14 Score=89.41 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=77.9
Q ss_pred eeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGNKIDKP 87 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 87 (137)
...+...+.++.++||||+..|...+...+..+|++++|+|+.+....+. ...+. +... .++| ++++.||+|+.
T Consensus 81 ~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~-~~~~---~gv~~iiv~vNK~D~~ 155 (222)
T d1zunb3 81 YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSY-IASL---LGIKHIVVAINKMDLN 155 (222)
T ss_dssp EEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHH-HHHH---TTCCEEEEEEECTTTT
T ss_pred EEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHH-HHHH---cCCCEEEEEEEccccc
Confidence 34456678999999999999999999999999999999999988644332 22222 2222 3444 78899999997
Q ss_pred CCCCH------HHHHHHhCCCCCCCCceeEEEeecccCCChH
Q 032598 88 EALSK------EDLMEQMGLKSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 88 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
+.... .++...+.........++++++||++|+|+.
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 156 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred cccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 64321 2233333333444567889999999999984
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=1.3e-15 Score=95.19 Aligned_cols=115 Identities=22% Similarity=0.271 Sum_probs=70.4
Q ss_pred EEEEEecCCcc-----------cc----HHhHHHHhccCCEEEEEEeCCCCCC---------hHHHHHHHHHHhcCCCCC
Q 032598 18 TIKLWDLGGQP-----------RF----RSMWERYCRAVSAIVYVVDAADYDN---------LPVSRSELHDLLSKPSLN 73 (137)
Q Consensus 18 ~~~~~Dt~g~~-----------~~----~~~~~~~~~~~~~~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~ 73 (137)
.+.++||||.. .. .......++.+|++++|+|+..... .......+...+. ..
T Consensus 44 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~ 120 (184)
T d2cxxa1 44 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---EL 120 (184)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HT
T ss_pred cceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---Hc
Confidence 35789999951 11 1223344678999999999864211 0111111111111 14
Q ss_pred CCcEEEEeeCCCCCCCCCH--HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 74 GIPLLVLGNKIDKPEALSK--EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 74 ~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++|+++|+||+|+.+.... ..+...+.. ........++++||++|+|+++++++|.+.+.++
T Consensus 121 ~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 121 DIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp TCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEeeeehhhhHHHHHHHHHHHhcc-cccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 6899999999998653221 222333332 2222334588999999999999999999988764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=3.7e-14 Score=90.24 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=76.2
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCc-EEEEee
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIP-LLVLGN 82 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~n 82 (137)
|+......+..++.+++++||||+.+|...+...++.+|++|+|+|+.+.-..+... .+..+.. .++| +++++|
T Consensus 54 Ti~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~----~gi~~iiv~iN 128 (204)
T d2c78a3 54 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ----VGVPYIVVFMN 128 (204)
T ss_dssp CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHH----TTCCCEEEEEE
T ss_pred EEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHH----cCCCeEEEEEE
Confidence 344455577888999999999999999999999999999999999999865544322 2222322 4565 677799
Q ss_pred CCCCCCCCC-H----HHHHHHhCCCCCCCCceeEEEeecccC
Q 032598 83 KIDKPEALS-K----EDLMEQMGLKSITDREVCCYMISCKNS 119 (137)
Q Consensus 83 K~D~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 119 (137)
|+|+.+... . .++.+.+....+......+++.||..+
T Consensus 129 K~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 129 KVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA 170 (204)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhh
Confidence 999865321 1 233343433333445567899998643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=7.9e-15 Score=91.79 Aligned_cols=122 Identities=17% Similarity=0.012 Sum_probs=80.3
Q ss_pred eEEEeCCEEEEEEecCCcccc------------HHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcE
Q 032598 10 RKVTKGNVTIKLWDLGGQPRF------------RSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPL 77 (137)
Q Consensus 10 ~~~~~~~~~~~~~Dt~g~~~~------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 77 (137)
..+..++..+.++|+||.... .......++.+|++++|+|++.....+. ..+...+.. .++|+
T Consensus 49 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~----~~~~~ 123 (186)
T d1mkya2 49 DEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER----RGRAS 123 (186)
T ss_dssp EEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEE
T ss_pred eeeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH----cCCce
Confidence 346677889999999997432 2344455788999999999987644322 223333322 56899
Q ss_pred EEEeeCCCCCCCCC--HHHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhhc
Q 032598 78 LVLGNKIDKPEALS--KEDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSK 136 (137)
Q Consensus 78 ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 136 (137)
++++||+|+..... ..++...+..........+++++||++|.|+++|+++|.+.+..+
T Consensus 124 i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~~ 184 (186)
T d1mkya2 124 VVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 184 (186)
T ss_dssp EEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred eeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999865432 233333322111111234689999999999999999998877654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.50 E-value=1e-13 Score=86.62 Aligned_cols=126 Identities=18% Similarity=0.172 Sum_probs=78.9
Q ss_pred cccceeeEEEe-CCEEEEEEecCCccc----cHHhH---HHHhccCCEEEEEEeCCCCCChHHHHH--H--HHHHhcCCC
Q 032598 4 TVGFNMRKVTK-GNVTIKLWDLGGQPR----FRSMW---ERYCRAVSAIVYVVDAADYDNLPVSRS--E--LHDLLSKPS 71 (137)
Q Consensus 4 t~~~~~~~~~~-~~~~~~~~Dt~g~~~----~~~~~---~~~~~~~~~~i~v~d~~~~~~~~~~~~--~--~~~~~~~~~ 71 (137)
|...+...... ++..+.+|||||..+ ..... ...+..++.++++++............ . .........
T Consensus 35 T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (185)
T d1lnza2 35 TLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR 114 (185)
T ss_dssp CCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS
T ss_pred eEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhh
Confidence 33444555443 356899999999622 11122 233567899999998776543322211 1 112222233
Q ss_pred CCCCcEEEEeeCCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 72 LNGIPLLVLGNKIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 72 ~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
..++|+++++||+|+.+.... ..+...+. ...+++++||++|+|+++++++|++.+.+
T Consensus 115 ~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~------~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 115 LTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp TTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred ccCCcchhhccccchHhHHHHHHHHHHHhc------cCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 457899999999999754322 23333332 23468999999999999999999998754
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=6.2e-13 Score=87.73 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=65.6
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+.+++.+++++||||+..|.......++.+|+.|+|+|+.+.-..+...-| .... ..++|.++++||
T Consensus 58 si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~----~~~lP~i~fINK 132 (276)
T d2bv3a2 58 TITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE----KYKVPRIAFANK 132 (276)
T ss_dssp CCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH----TTTCCEEEEEEC
T ss_pred ccccceeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH----HcCCCEEEEEec
Confidence 45566677889999999999999999999999999999999999999986554443333 3332 257999999999
Q ss_pred CCCCCC
Q 032598 84 IDKPEA 89 (137)
Q Consensus 84 ~D~~~~ 89 (137)
+|....
T Consensus 133 mDr~~a 138 (276)
T d2bv3a2 133 MDKTGA 138 (276)
T ss_dssp TTSTTC
T ss_pred cccccc
Confidence 998764
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=1.9e-13 Score=88.80 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=78.3
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC------ChHHHHHHHHHHhcCCCCCCCc-
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD------NLPVSRSELHDLLSKPSLNGIP- 76 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p- 76 (137)
|+......+...+.++++.||||+.+|...+...++.+|++|+|+|+.+.. ...+....+..+ .. .++|
T Consensus 71 Ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~-~~---~gv~~ 146 (239)
T d1f60a3 71 TIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQ 146 (239)
T ss_dssp CCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCE
T ss_pred ccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHH-HH---cCCCe
Confidence 455667778889999999999999999999999999999999999998631 001122222222 11 3454
Q ss_pred EEEEeeCCCCCCCCCH------HHHHHHhCCCCCCCCceeEEEeecccCCChH
Q 032598 77 LLVLGNKIDKPEALSK------EDLMEQMGLKSITDREVCCYMISCKNSTNID 123 (137)
Q Consensus 77 ~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 123 (137)
++++.||+|+.+.... .++...+.........+.++++||..|+|+-
T Consensus 147 iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~ 199 (239)
T d1f60a3 147 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 199 (239)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence 7889999998764321 1222222211222335678999999998863
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.42 E-value=1.4e-13 Score=86.63 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=61.7
Q ss_pred hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeecc
Q 032598 38 CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISCK 117 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 117 (137)
+..++++++|+|+++...... ..++..+.. .++|+++|+||+|+.+.....+..+.+..........+++++||+
T Consensus 103 ~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~----~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 177 (195)
T d1svia_ 103 REELKAVVQIVDLRHAPSNDD-VQMYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSE 177 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTT
T ss_pred ccchhhhhhhhhccccccccc-ccccccccc----ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCC
Confidence 456799999999987543222 233333322 468999999999987655443333322111111234578999999
Q ss_pred cCCChHHHHHHHHHhhh
Q 032598 118 NSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 118 ~~~~v~~~~~~i~~~~~ 134 (137)
+|+|+++++++|.+.+.
T Consensus 178 ~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 178 TKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998875
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.42 E-value=7.9e-13 Score=85.09 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=74.8
Q ss_pred ceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCC------hHHHHHHHHHHhcCCCCCCCcEEEE
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDN------LPVSRSELHDLLSKPSLNGIPLLVL 80 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p~ivv 80 (137)
.....++.++..++++||||+..|...+...++.+|+.++|+|+.+... ..+..+.+...... .-.+++++
T Consensus 71 ~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~ 147 (224)
T d1jnya3 71 LTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVA 147 (224)
T ss_dssp ---CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEE
T ss_pred ceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEE
Confidence 3344567788999999999999999999999999999999999987421 11222222212111 22457889
Q ss_pred eeCCCCCCCC-CH---H----HHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 81 GNKIDKPEAL-SK---E----DLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 81 ~nK~D~~~~~-~~---~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
.||+|+.... .. . .+...+..........+++++||..|.|+-+
T Consensus 148 iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 148 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred EEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 9999987532 11 1 1122222222334467899999999999743
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.42 E-value=5.8e-12 Score=82.79 Aligned_cols=79 Identities=22% Similarity=0.135 Sum_probs=63.7
Q ss_pred cccceeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 4 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 4 t~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
|+......+.+++.+++++||||+.+|.......++-+|++++|+|+.+.-..+...-|. .+.+ .++|.++++||
T Consensus 54 ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~----~~~p~~i~iNk 128 (267)
T d2dy1a2 54 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER----LGLPRMVVVTK 128 (267)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEEC
T ss_pred eEEeecccccccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh----ccccccccccc
Confidence 455566678899999999999999999999999999999999999999865544433332 2222 57999999999
Q ss_pred CCCC
Q 032598 84 IDKP 87 (137)
Q Consensus 84 ~D~~ 87 (137)
+|..
T Consensus 129 ~D~~ 132 (267)
T d2dy1a2 129 LDKG 132 (267)
T ss_dssp GGGC
T ss_pred cccc
Confidence 9974
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.29 E-value=3.4e-12 Score=83.09 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=65.0
Q ss_pred eeeEEEeCCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCC-----C-hHHHHHHHHHHhcCCCCCCCc-EEEE
Q 032598 8 NMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD-----N-LPVSRSELHDLLSKPSLNGIP-LLVL 80 (137)
Q Consensus 8 ~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~-~~~~~~~~~~~~~~~~~~~~p-~ivv 80 (137)
....+...+.++.+.||||+..|...+......+|++++|+|+.+.. . ..+....+..+ .. .++| ++++
T Consensus 93 ~~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~---~~i~~iiv~ 168 (245)
T d1r5ba3 93 GRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVV 168 (245)
T ss_dssp -CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEE
T ss_pred cccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HH---cCCCeEEEE
Confidence 33456677889999999999999999999999999999999998741 0 01122222222 11 2343 7788
Q ss_pred eeCCCCCCCCC----HHHHHHHhCC-----CCCC-CCceeEEEeecccCCChHHHHH
Q 032598 81 GNKIDKPEALS----KEDLMEQMGL-----KSIT-DREVCCYMISCKNSTNIDTVID 127 (137)
Q Consensus 81 ~nK~D~~~~~~----~~~~~~~~~~-----~~~~-~~~~~~~~~Sa~~~~~v~~~~~ 127 (137)
.||+|+..... ..++.+.+.. .... ...++++++||++|+|+.++++
T Consensus 169 iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 169 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred EEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 99999975432 1222222211 0111 1256799999999999977643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=1.7e-10 Score=72.71 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=60.0
Q ss_pred eeEEEeCCEEEEEEecCCccccHHhHHHHh----ccCCEEEEEEeCCC-CCChHHHHHHHHHHhc---CCCCCCCcEEEE
Q 032598 9 MRKVTKGNVTIKLWDLGGQPRFRSMWERYC----RAVSAIVYVVDAAD-YDNLPVSRSELHDLLS---KPSLNGIPLLVL 80 (137)
Q Consensus 9 ~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~----~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~---~~~~~~~p~ivv 80 (137)
...+..++..+.+|||||++..+..+..++ ..++.+++++|+.+ ..+++....|+..... .....++|++++
T Consensus 38 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv 117 (209)
T d1nrjb_ 38 LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 117 (209)
T ss_dssp EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEE
T ss_pred EEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 334556678899999999998776666554 45689999999775 5667776666654432 223468999999
Q ss_pred eeCCCCCCCCC
Q 032598 81 GNKIDKPEALS 91 (137)
Q Consensus 81 ~nK~D~~~~~~ 91 (137)
+||+|+.+...
T Consensus 118 ~NK~D~~~~~~ 128 (209)
T d1nrjb_ 118 CNKSELFTARP 128 (209)
T ss_dssp EECTTSTTCCC
T ss_pred EEeecccccCc
Confidence 99999977654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=3.6e-08 Score=60.33 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=70.0
Q ss_pred EEeCCEEEEEEecCCccccHHh--HHHH-------hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 12 VTKGNVTIKLWDLGGQPRFRSM--WERY-------CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 12 ~~~~~~~~~~~Dt~g~~~~~~~--~~~~-------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
...+...+..+|++|....... .... ...++.++++.|..... .....+...+.. ...|.++++|
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~ 121 (179)
T d1egaa1 48 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVN 121 (179)
T ss_dssp EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEE
T ss_pred eecCCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccc--hhHHHHHHHhhh----ccCceeeeee
Confidence 4456778888999886433221 1111 23467777888876533 222223333322 4578899999
Q ss_pred CCCCCCCCCH-HHHHHHhCCCCCCCCceeEEEeecccCCChHHHHHHHHHhhhh
Q 032598 83 KIDKPEALSK-EDLMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKS 135 (137)
Q Consensus 83 K~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 135 (137)
|+|+...... ......+.. .....+++++||++|+|+++|+++|.+.+-+
T Consensus 122 k~d~~~~~~~~~~~~~~~~~---~~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe 172 (179)
T d1egaa1 122 KVDNVQEKADLLPHLQFLAS---QMNFLDIVPISAETGLNVDTIAAIVRKHLPE 172 (179)
T ss_dssp STTTCCCHHHHHHHHHHHHT---TSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred eeeccchhhhhhhHhhhhhh---hcCCCCEEEEeCcCCCCHHHHHHHHHHhCCC
Confidence 9998765321 111121111 1123468999999999999999999987743
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=3.6e-09 Score=71.49 Aligned_cols=68 Identities=24% Similarity=0.232 Sum_probs=55.6
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
+++.++++||||+..|.......++-+|++++|+|+.+.-..+...-|.... . .++|.++++||+|..
T Consensus 94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~----~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 161 (341)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-H----cCCCeEEEEECcccc
Confidence 4578999999999999999999999999999999999876555444443333 2 569999999999964
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.78 E-value=1.2e-08 Score=66.96 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=66.8
Q ss_pred HhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeE
Q 032598 32 SMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCC 111 (137)
Q Consensus 32 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (137)
..+...++.+|.+++|+|+.++-+... ..++.+. .++|+++|+||+|+.+..........+... ....
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~-----~~~~ 74 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQ-----GIRS 74 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTT-----TCCE
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhc-----CCcc
Confidence 445667999999999999988755432 3444443 368999999999998765555666666432 2348
Q ss_pred EEeecccCCChHHHHHHHHHhhh
Q 032598 112 YMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 112 ~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
+.+||+++.+..++...+.+.+.
T Consensus 75 i~isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 75 LSINSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHH
T ss_pred ceeecccCCCccccchhhhhhhh
Confidence 99999999999888877766554
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.70 E-value=1.8e-09 Score=69.30 Aligned_cols=117 Identities=18% Similarity=0.074 Sum_probs=68.9
Q ss_pred EEEEEEecCCccccHHhHHH---Hh--ccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWER---YC--RAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKPEAL 90 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~---~~--~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 90 (137)
..+.+.|+||+......... .. ...+.+++++|+........... .+..... ......|.++++||+|+....
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ivvinK~D~~~~~ 173 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLSEE 173 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCCHH
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHH-HHHhCCCceeeeeccccccHH
Confidence 45889999999765432222 22 23668999999876544433221 1111100 011357899999999998643
Q ss_pred CHHHHH----------HHhCCCC---------------CCCCceeEEEeecccCCChHHHHHHHHHhhh
Q 032598 91 SKEDLM----------EQMGLKS---------------ITDREVCCYMISCKNSTNIDTVIDWLVKHSK 134 (137)
Q Consensus 91 ~~~~~~----------~~~~~~~---------------~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 134 (137)
...... ..+.... .....++++++||++|+|+++++..|.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~ 242 (244)
T d1yrba1 174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 242 (244)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 221111 0000000 0012456899999999999999999988653
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=2.6e-07 Score=56.53 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=51.9
Q ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEEEeec
Q 032598 41 VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 41 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
+..++.+.+......... ..++..... ...++++++||+|+.+...... +.+.+.. .....+++++||
T Consensus 99 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~---~~~~~~~i~vSA 170 (188)
T d1puia_ 99 LQGLVVLMDIRHPLKDLD-QQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNGDVQVETFSS 170 (188)
T ss_dssp EEEEEEEEETTSCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCSCEEEEECBT
T ss_pred eeEEEEeecccccchhHH-HHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHh---hCCCCcEEEEeC
Confidence 344555555554433222 233333322 4578999999999876533322 2222221 112456899999
Q ss_pred ccCCChHHHHHHHHHhh
Q 032598 117 KNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 117 ~~~~~v~~~~~~i~~~~ 133 (137)
++|+|+++|++.|.+.+
T Consensus 171 ~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 171 LKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=4.9e-07 Score=57.40 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=58.0
Q ss_pred hccCCEEEEEEeCCCC-CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHHHhCCCCCCCCceeEEEeec
Q 032598 38 CRAVSAIVYVVDAADY-DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKEDLMEQMGLKSITDREVCCYMISC 116 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 116 (137)
..+.|.+++|+++.+| .+...+.+++-.... .++|.++++||+|+.+......+....... ....+++.+||
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---~~~~~v~~vSa 80 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY---SGLYPIVKTSA 80 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---TTTSCEEECCT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhccc---ccceeEEEecc
Confidence 4678999999988875 345556666554432 689999999999997644333222222100 00124899999
Q ss_pred ccCCChHHHHHHHH
Q 032598 117 KNSTNIDTVIDWLV 130 (137)
Q Consensus 117 ~~~~~v~~~~~~i~ 130 (137)
++++|++++.+.+.
T Consensus 81 ~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 81 KTGMGIEELKEYLK 94 (225)
T ss_dssp TTCTTHHHHHHHHS
T ss_pred ccchhHhhHHHHhc
Confidence 99999999988763
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=4.6e-07 Score=60.79 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=63.6
Q ss_pred CEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---
Q 032598 16 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSK--- 92 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 92 (137)
++.+.+++|.|.-.-. ......+|.+++|.++...+..+....-+.+ ++=++|+||+|+......
T Consensus 146 g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e---------~aDi~VvNKaD~~~~~~~~~~ 213 (327)
T d2p67a1 146 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLME---------VADLIVINKDDGDNHTNVAIA 213 (327)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHH---------HCSEEEECCCCTTCHHHHHHH
T ss_pred CCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhc---------cccEEEEEeecccchHHHHHH
Confidence 4567777786653222 1345679999999988776655443333222 233889999998764322
Q ss_pred -HHHHHHhCC--CCCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 93 -EDLMEQMGL--KSITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 93 -~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.+....+.. ........+++.|||++|+|++++.+.|.+..
T Consensus 214 ~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 214 RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 222232221 12233456799999999999999999997654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.27 E-value=1.8e-06 Score=57.72 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=67.0
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKE- 93 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 93 (137)
-++.+.+++|.|.-.-... ....+|..++|..+...+..+....-. ..++=++|+||+|+.+.....
T Consensus 142 ~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gi---------lE~aDi~vvNKaD~~~~~~~~~ 209 (323)
T d2qm8a1 142 AGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRAS 209 (323)
T ss_dssp TTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhH---------hhhhheeeEeccccccchHHHH
Confidence 3577888999776443322 345599999999998766544222111 123449999999987654321
Q ss_pred ----HHHHHhCCC--CCCCCceeEEEeecccCCChHHHHHHHHHhh
Q 032598 94 ----DLMEQMGLK--SITDREVCCYMISCKNSTNIDTVIDWLVKHS 133 (137)
Q Consensus 94 ----~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 133 (137)
.....+... .......+++.+||++|+|++++.++|.+..
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 210 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 223333322 2223456799999999999999999997654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=2.4e-06 Score=58.74 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=62.0
Q ss_pred CEEEEEEecCCccccHHhHHHH-----hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC--
Q 032598 16 NVTIKLWDLGGQPRFRSMWERY-----CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE-- 88 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-- 88 (137)
..++.+|||||..........+ +..+|.++++.|.. -+-.+. .....+.+ .++|+++|.||+|...
T Consensus 106 ~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~--~~~~d~-~l~~~l~~----~~k~~~~V~nK~D~~~~~ 178 (400)
T d1tq4a_ 106 IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR--FKKNDI-DIAKAISM----MKKEFYFVRTKVDSDITN 178 (400)
T ss_dssp CTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSC--CCHHHH-HHHHHHHH----TTCEEEEEECCHHHHHHH
T ss_pred CCeEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCC--CCHHHH-HHHHHHHH----cCCCEEEEEeCcccccch
Confidence 4468899999975433222222 45688888877643 222221 22333322 4789999999999521
Q ss_pred -------CCCHHHH--------HHHhCCCCCCCCceeEEEeeccc--CCChHHHHHHHHHhhh
Q 032598 89 -------ALSKEDL--------MEQMGLKSITDREVCCYMISCKN--STNIDTVIDWLVKHSK 134 (137)
Q Consensus 89 -------~~~~~~~--------~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~i~~~~~ 134 (137)
....... ...+... .....+++.+|..+ ..++.++.+.+.+.+.
T Consensus 179 ~~~~~~~~~~~e~~l~~ir~~~~~~l~~~--~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~ 239 (400)
T d1tq4a_ 179 EADGEPQTFDKEKVLQDIRLNCVNTFREN--GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 239 (400)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHHHHHHHT--TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hhhcccccccHHHHHHHHHHHHHHHHHHc--CCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence 0111111 2222111 11233577888754 4589999999887764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.09 E-value=2e-06 Score=54.75 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=56.3
Q ss_pred hccCCEEEEEEeCCCC-CChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH----HHHHhCCCCCCCCceeEE
Q 032598 38 CRAVSAIVYVVDAADY-DNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPEALSKED----LMEQMGLKSITDREVCCY 112 (137)
Q Consensus 38 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 112 (137)
..+.|.+++|+++.++ .+...+.+++-... ..++|.++|+||+|+.+.....+ +.+.+.. .+.+++
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~~v~ 78 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGYDVY 78 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTCCEE
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHH----HcCCCEEEEEecccccccHHHHHHHHHHHHHHhh-----ccccce
Confidence 4678999999998876 45565666655443 36899999999999976433221 1111111 123489
Q ss_pred EeecccCCChHHHHHHH
Q 032598 113 MISCKNSTNIDTVIDWL 129 (137)
Q Consensus 113 ~~Sa~~~~~v~~~~~~i 129 (137)
.+||++++|++++...+
T Consensus 79 ~~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 79 LTSSKDQDSLADIIPHF 95 (231)
T ss_dssp ECCHHHHTTCTTTGGGG
T ss_pred eeecCChhHHHHHHHhh
Confidence 99999999998877654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.52 E-value=0.00026 Score=45.49 Aligned_cols=81 Identities=12% Similarity=0.091 Sum_probs=48.1
Q ss_pred ceeeEEEeCCEEEEEEecCCcccc-------HHhHHHHh--ccCCEEEEEEeCCCCC-ChHH--HHHHHHHHhcCCCCCC
Q 032598 7 FNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYC--RAVSAIVYVVDAADYD-NLPV--SRSELHDLLSKPSLNG 74 (137)
Q Consensus 7 ~~~~~~~~~~~~~~~~Dt~g~~~~-------~~~~~~~~--~~~~~~i~v~d~~~~~-~~~~--~~~~~~~~~~~~~~~~ 74 (137)
........++.++.++||||.... ......+. ...+++++|++++... +..+ ....+...+.. ..-
T Consensus 70 ~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~--~~~ 147 (257)
T d1h65a_ 70 PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK--GIW 147 (257)
T ss_dssp CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCG--GGG
T ss_pred EEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcch--hhh
Confidence 334456678899999999996322 11222222 3578999999887643 2222 22233333221 112
Q ss_pred CcEEEEeeCCCCCCC
Q 032598 75 IPLLVLGNKIDKPEA 89 (137)
Q Consensus 75 ~p~ivv~nK~D~~~~ 89 (137)
.+++++.||+|....
T Consensus 148 ~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 148 NKAIVALTHAQFSPP 162 (257)
T ss_dssp GGEEEEEECCSCCCG
T ss_pred hCEEEEEECcccCCc
Confidence 578999999998653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.10 E-value=0.0021 Score=41.90 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=44.8
Q ss_pred EEEEEEecCCccc-------------cHHhHHHHhccCCEEEEEE-eCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 17 VTIKLWDLGGQPR-------------FRSMWERYCRAVSAIVYVV-DAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 17 ~~~~~~Dt~g~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
..+.++||||... ...+...|+..++.+++++ +......-.....+...+.. ...++++|+|
T Consensus 131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~----~~~r~i~Vit 206 (306)
T d1jwyb_ 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP----EGKRTIGVIT 206 (306)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS----SCSSEEEEEE
T ss_pred CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc----CCCeEEEEEe
Confidence 5689999999632 2357778899999866655 44443333333444444422 3467999999
Q ss_pred CCCCCCC
Q 032598 83 KIDKPEA 89 (137)
Q Consensus 83 K~D~~~~ 89 (137)
|+|....
T Consensus 207 k~D~~~~ 213 (306)
T d1jwyb_ 207 KLDLMDK 213 (306)
T ss_dssp CTTSSCS
T ss_pred ccccccc
Confidence 9998654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.00 E-value=0.002 Score=41.86 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=45.6
Q ss_pred CEEEEEEecCCccc-------------cHHhHHHHhccCCE-EEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 16 NVTIKLWDLGGQPR-------------FRSMWERYCRAVSA-IVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~-------------~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
...+.++|+||... ...+...|+...+. +++|.++....+......+...+.. ...++++|.
T Consensus 124 ~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~----~~~r~i~Vl 199 (299)
T d2akab1 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVI 199 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSSEEEEE
T ss_pred CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc----CCCceeeEE
Confidence 34689999999531 23556677777775 4556666655444444455554422 346799999
Q ss_pred eCCCCCCC
Q 032598 82 NKIDKPEA 89 (137)
Q Consensus 82 nK~D~~~~ 89 (137)
||+|....
T Consensus 200 tk~D~~~~ 207 (299)
T d2akab1 200 TKLDLMDE 207 (299)
T ss_dssp ECGGGSCT
T ss_pred eccccccc
Confidence 99998754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.74 E-value=0.068 Score=34.11 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=26.4
Q ss_pred EEEEEEecCCccccHH-------hHHHHhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRFRS-------MWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~-------~~~~~~~~~~~~i~v~d~~~ 52 (137)
..++++|+||.-...+ .....++.+|+++.|+|+..
T Consensus 66 a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence 3689999999754443 23344788999999998753
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.31 E-value=0.35 Score=29.45 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=44.3
Q ss_pred CEEEEEEecCCccccHHh----HHHH---h-----ccCCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEee
Q 032598 16 NVTIKLWDLGGQPRFRSM----WERY---C-----RAVSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLGN 82 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~----~~~~---~-----~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~n 82 (137)
+..+.++||+|...+... +..+ . ...+-.++|+|++... ...+....+..+ + +-=++.+
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~lI~T 159 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------G-LTGVIVT 159 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------C-CSEEEEE
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-------C-CceEEEe
Confidence 567899999997554321 1111 1 1347789999998753 233333332222 1 2256899
Q ss_pred CCCCCCC-CCHHHHHHHhCC
Q 032598 83 KIDKPEA-LSKEDLMEQMGL 101 (137)
Q Consensus 83 K~D~~~~-~~~~~~~~~~~~ 101 (137)
|.|-... -..-.+....+.
T Consensus 160 KlDet~~~G~~l~~~~~~~~ 179 (207)
T d1okkd2 160 KLDGTAKGGVLIPIVRTLKV 179 (207)
T ss_dssp CTTSSCCCTTHHHHHHHHCC
T ss_pred ccCCCCCccHHHHHHHHHCC
Confidence 9997543 234455555554
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.13 E-value=0.073 Score=34.52 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEEEecCCccccHH----hHHHH---hccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRFRS----MWERY---CRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~----~~~~~---~~~~~~~i~v~d~~~ 52 (137)
..++++|+||.-...+ +...+ ++.+|++++|+|+.+
T Consensus 71 ~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred ccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 6799999999744322 22223 467999999999874
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.56 E-value=0.16 Score=30.98 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=45.8
Q ss_pred CCEEEEEEecCCccccHHhHHHHhccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLL-VLGNKIDKPEALS 91 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~ 91 (137)
+.+.+.++|+++.... .....+..+|.++++...+. .++....+....+.+ .+.|++ ++.||.+..+...
T Consensus 110 ~~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~~ 180 (237)
T d1g3qa_ 110 DKFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRDI 180 (237)
T ss_dssp GGCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTCC
T ss_pred hcCCEEEEcccccccc--cchhhhhhhhcccccccccc-eecchhhHHHHHHhh----hhhhhhhhhhcccccccchh
Confidence 3567899999876543 23345778999999997753 345555555544433 456665 7899998765443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.97 E-value=0.37 Score=29.48 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=50.1
Q ss_pred CCEEEEEEecCCccccHHh----HHHH---hcc-----CCEEEEEEeCCCCC-ChHHHHHHHHHHhcCCCCCCCcEEEEe
Q 032598 15 GNVTIKLWDLGGQPRFRSM----WERY---CRA-----VSAIVYVVDAADYD-NLPVSRSELHDLLSKPSLNGIPLLVLG 81 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~----~~~~---~~~-----~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~ 81 (137)
++..+.++||+|....... +..+ .+. .+-.++|+|++... ...+....+..+ -+-=++.
T Consensus 90 ~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~lIl 161 (211)
T d2qy9a2 90 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------GLTGITL 161 (211)
T ss_dssp TTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------CCCEEEE
T ss_pred cCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------CCceEEE
Confidence 3567899999997554321 1111 221 45889999987642 222222222211 1236779
Q ss_pred eCCCCCCCCC-HHHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 82 NKIDKPEALS-KEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 82 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
+|.|-....- .-.+....+.+ +..++ .|+++++
T Consensus 162 TKlDe~~~~G~~l~~~~~~~~P--------i~~i~--~Gq~v~D 195 (211)
T d2qy9a2 162 TKLDGTAKGGVIFSVADQFGIP--------IRYIG--VGERIED 195 (211)
T ss_dssp ECCTTCTTTTHHHHHHHHHCCC--------EEEEE--CSSSGGG
T ss_pred eecCCCCCccHHHHHHHHHCCC--------EEEEe--CCCCccc
Confidence 9999754322 23444444443 55554 6777754
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.67 E-value=0.64 Score=29.66 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=26.9
Q ss_pred EEEEEEecCCcccc-------HHhHHHHhccCCEEEEEEeCCC
Q 032598 17 VTIKLWDLGGQPRF-------RSMWERYCRAVSAIVYVVDAAD 52 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~-------~~~~~~~~~~~~~~i~v~d~~~ 52 (137)
..+++.|+||.... .......++.+|++++|+|+.+
T Consensus 75 ~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 75 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence 57899999985322 1234455789999999999876
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.84 E-value=0.24 Score=30.40 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=36.7
Q ss_pred EEEEEEecCCccccHHhHHHH--------hccCCEEEEEEeCCCCCChHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCC
Q 032598 17 VTIKLWDLGGQPRFRSMWERY--------CRAVSAIVYVVDAADYDNLPVSRS-ELHDLLSKPSLNGIPLLVLGNKIDKP 87 (137)
Q Consensus 17 ~~~~~~Dt~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~ 87 (137)
....++++.|...-......+ .-..++++.|+|+........... ...++ ...+ ++++||+|+.
T Consensus 90 ~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi----~~AD---~ivlNK~Dl~ 162 (222)
T d1nija1 90 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV----GYAD---RILLTKTDVA 162 (222)
T ss_dssp CSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHH----HTCS---EEEEECTTTC
T ss_pred cceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHH----HhCC---cccccccccc
Confidence 345788888865443333222 123688999999976422111111 11122 1233 7889999997
Q ss_pred CC
Q 032598 88 EA 89 (137)
Q Consensus 88 ~~ 89 (137)
..
T Consensus 163 ~~ 164 (222)
T d1nija1 163 GE 164 (222)
T ss_dssp SC
T ss_pred cH
Confidence 54
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.50 E-value=0.37 Score=29.36 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=38.5
Q ss_pred CCEEEEEEecCCccccHHh----HHHH--hccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 032598 15 GNVTIKLWDLGGQPRFRSM----WERY--CRAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDKPE 88 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 88 (137)
.+..+.++||+|....... +..+ ....+-+++|.|++.... .+ .....+.+... +-=++.+|.|-..
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~--~~-~~~~~f~~~~~----~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--AL-SVARAFDEKVG----VTGLVLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HH-HHHHHHHHHTC----CCEEEEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh--HH-HHHHHHHhhCC----CCeeEEeecCccc
Confidence 3567899999997554332 2222 234689999999876532 22 22222222111 1247799999653
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| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=84.16 E-value=0.9 Score=27.71 Aligned_cols=92 Identities=12% Similarity=0.047 Sum_probs=49.4
Q ss_pred CEEEEEEecCCccccHHhHH----HHhcc--------CCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 032598 16 NVTIKLWDLGGQPRFRSMWE----RYCRA--------VSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNK 83 (137)
Q Consensus 16 ~~~~~~~Dt~g~~~~~~~~~----~~~~~--------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 83 (137)
+..+.++||+|...+..... .+.+. .+-.++|+|++.. .+............ -+-=++.+|
T Consensus 93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~lI~TK 165 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVTGIILTK 165 (213)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCCEEEEEC
T ss_pred CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc-----CCceEEEec
Confidence 56799999999765543222 22111 3578999998753 22222222222111 123577999
Q ss_pred CCCCCCC-CHHHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 84 IDKPEAL-SKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 84 ~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
.|-.... ..-.+....+.+ +..++ +|+++++
T Consensus 166 lDe~~~~G~~l~~~~~~~~P--------i~~i~--~Gq~v~D 197 (213)
T d1vmaa2 166 LDGTAKGGITLAIARELGIP--------IKFIG--VGEKAED 197 (213)
T ss_dssp GGGCSCTTHHHHHHHHHCCC--------EEEEE--CSSSGGG
T ss_pred ccCCCcccHHHHHHHHHCCC--------EEEEe--CCCCccc
Confidence 9975432 223444444443 54444 5766654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=83.82 E-value=1.6 Score=26.45 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=48.7
Q ss_pred CCEEEEEEecCCccccH------HhHHHHh--ccCCEEEEEEeCCCCCChHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 032598 15 GNVTIKLWDLGGQPRFR------SMWERYC--RAVSAIVYVVDAADYDNLPVSRSELHDLLSKPSLNGIPLLVLGNKIDK 86 (137)
Q Consensus 15 ~~~~~~~~Dt~g~~~~~------~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 86 (137)
.+..+.++||+|...+. ..+..+. -..+-+++|++++.... ......... .. .++ --++.+|.|-
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~-~~---~~~-~~lI~TKlDe 165 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFN-QA---SKI-GTIIITKMDG 165 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHH-HH---CTT-EEEEEECTTS
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhh-cc---cCc-ceEEEecccC
Confidence 45689999999975432 1112222 23678899999876422 222221111 11 122 2467999997
Q ss_pred CCCCCHHHHHHHhCCCCCCCCceeEEEeecccCCChHH
Q 032598 87 PEALSKEDLMEQMGLKSITDREVCCYMISCKNSTNIDT 124 (137)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 124 (137)
... .-.+.+..... ++++..+| .|+++++
T Consensus 166 t~~--~G~~l~~~~~~-----~lPi~~it--~Gq~v~D 194 (211)
T d1j8yf2 166 TAK--GGGALSAVAAT-----GATIKFIG--TGEKIDE 194 (211)
T ss_dssp CSC--HHHHHHHHHTT-----TCCEEEEE--CSSSTTC
T ss_pred CCc--ccHHHHHHHHH-----CcCEEEEe--CCCCccc
Confidence 543 33333322211 22355555 5777754
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