Citrus Sinensis ID: 032632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MSSAAARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVKTA
Secondary Structure (PSIPRED)
ccHHHHHHHccHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccEEccHHHHHHcccccEEcHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHcccccccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MSSAAARVFNGCRALlapakssaaassaastkakskttkkprakspvkrgaptrptgiskvspvspALAKflgapeasrsDAVRQIWAHVKthnlqnpenkreILCDEKLKAIFEGKNAVGFLEIgkllsphfvkta
Flexible Loop (DISEMBL)
MSSAAARVFNGCRALLapakssaaassaastkakskttkkprakspvkrgaptrptgiskvspvsPALAKFLGAPEASRSDAVRQIWAHVkthnlqnpenkrEILCDEKLKAIFEGKNAVgfleigkllsphfvkta
Low Complexity Region (SEG)
MSSAAARVFNGCRALLapakssaaassaastkakskttkkprakspVKRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVKTA
Disordered region (IsUnstruct)
**********GCR*********************************************************************VRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF****
Disordered Region (DISOPRED)
*************************************************************SPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFV***
Disordered Region (DISEMBL)
MSSAAARVFNGCRALLA*************************************PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVKTA
Disordered Region (DISPRO)
**********************************************************SKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSAAARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVKTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q08747	228	Upstream activation facto	yes	no	0.620	0.372	0.460	1e-15
Q05024	226	Protein TRI1 OS=Saccharom	no	no	0.496	0.300	0.485	9e-14
O74503	233	Upstream activation facto	yes	no	0.788	0.463	0.330	1e-12
Q9P7S3	425	SWI/SNF and RSC complexes	no	no	0.386	0.124	0.433	2e-06
Q91FL8	312	Putative SWIB domain-cont	N/A	no	0.467	0.205	0.402	4e-06
Q61466	515	SWI/SNF-related matrix-as	yes	no	0.474	0.126	0.363	5e-06
Q96GM5	515	SWI/SNF-related matrix-as	yes	no	0.474	0.126	0.348	1e-05
Q2TBN1	515	SWI/SNF-related matrix-as	yes	no	0.474	0.126	0.348	1e-05
Q9SIV5	1773	Zinc finger CCCH domain-c	no	no	0.343	0.026	0.416	0.0002
Q196Z0	282	Putative SWIB domain-cont	N/A	no	0.532	0.258	0.337	0.0004

>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 4/89 (4%)

Query: 48  KRGAPTR-PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILC 106
           K+G  ++ P    KV+ +S +LA  LG  E +R++ VR++WA++K HNLQNP NK+EILC
Sbjct: 110 KKGTVSKSPISTRKVT-LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILC 168

Query: 107 DEKLKAIFEGKNAVGFLEIGKLLSPHFVK 135
           DEKL+ I  GK+   F E+ K+L+ H  +
Sbjct: 169 DEKLELIL-GKSTNMF-EMHKILASHMTE 195

Nonessential component of the UAF (upstream activation factor) complex which interacts with the upstream element of the RNA polymerase I promoter and forms a stable preinitiation complex. Together with SPT15/TBP UAF seems to stimulate basal transcription to a fully activated level. UAF30 seems to play a role in silencing transcription by RNA polymerase II.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 2/70 (2%)

Query: 64  VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
           +S  L KFLG+ E  R+  V+ IW ++K H+LQNP+++REILCDEK++ IF GK    F 
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTMF- 183

Query: 124 EIGKLLSPHF 133
            + KLL+ H 
Sbjct: 184 SMNKLLTKHL 193

May be involved in transcription regulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 13/121 (10%)

Query: 10  NGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVSPALA 69
           NG      PAK +           K K  + P A +P           ++K   +SP LA
Sbjct: 81  NGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDP-ANNP-----------LNKPMKLSPKLA 128

Query: 70  KFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLL 129
           +FLG  + SR   V+++W ++K H+LQ+P +KR ILCD+KLK++FE  + +    + K L
Sbjct: 129 EFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEV-DTLHMFTMNKYL 187

Query: 130 S 130
           +
Sbjct: 188 T 188

Component of the UAF (upstream activation factor) complex which interacts with the upstream element of the RNA polymerase I promoter and forms a stable preinitiation complex. UAF seems to stimulate basal transcription to a fully activated level.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 64  VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEG 116
           +S A A  LG  E +R D V  +W ++K H LQ+ E KR I CD+ L+ +FE 
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA 260

Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes. Part of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q91FL8|VF306_IIV6 Putative SWIB domain-containing protein 306R OS=Invertebrate iridescent virus 6 GN=IIV6-306R PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 47  VKRGAPTRPTGISKVSPVSPALAKFLG---APEASRSDAVRQIWAHVKTHNLQNPENKRE 103
           VK    +  TG+ K+  ++  LAKFLG   +   SR+D  + I  HV+   LQN ENK+ 
Sbjct: 131 VKHTRTSANTGLGKLRVITNDLAKFLGCDPSEMKSRNDVTKAICKHVEEKKLQNQENKKI 190

Query: 104 ILCDEKL 110
           I+CD  L
Sbjct: 191 IMCDTML 197

Spodoptera frugiperda (taxid: 7108)

>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 64  VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
           + P LA+ LG    +R   ++ +W ++KTH LQ+P  +  +LCD+ L+ IFE +  + F 
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQR-MKFS 355

Query: 124 EIGKLL 129
           EI + L
Sbjct: 356 EIPQRL 361

Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 64  VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
           + P LA+ LG    +R   ++ +W ++KTH LQ+P  +  ++CD+ L+ IFE +  + F 
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQR-MKFS 355

Query: 124 EIGKLL 129
           EI + L
Sbjct: 356 EIPQRL 361

Involved in chromatin remodeling. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.

Homo sapiens (taxid: 9606)

>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 64  VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
           + P LA+ LG    +R   ++ +W ++KTH LQ+P  +  ++CD+ L+ IFE +  + F 
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQR-MKFS 355

Query: 124 EIGKLL 129
           EI + L
Sbjct: 356 EIPQRL 361

Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Bos taurus (taxid: 9913)

>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=NERD PE=1 SV=3

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 88  AHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK 135
           A++K +NL++P  K +++CD +L+ +F GK+ VG  E+  LL  HF+K
Sbjct: 838 AYIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHFLK 884

Arabidopsis thaliana (taxid: 3702)

>sp|Q196Z0|VF306_IIV3 Putative SWIB domain-containing protein 070L OS=Invertebrate iridescent virus 3 GN=IIV3-070L PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 48  KRGAPTRPTGISKVSPVSPALAKF----LGAPEASRSDAVRQIWAHVKTHNLQNPENKRE 103
           KR   +  TG+ K   +S A+A F     G  E SR D  + + A++K ++L++  NK  
Sbjct: 88  KRTRESHNTGLEKPRMISEAMATFADWEYGKTEKSRYDVTKYLCAYIKDNDLRDASNKTI 147

Query: 104 ILCDEKLKAIFEGKNAV 120
           IL D KLK + +  ++V
Sbjct: 148 ILPDAKLKKLLQVDDSV 164

Psorophora ferox (taxid: 7183)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
449432287	157	PREDICTED: uncharacterized protein LOC10	0.919	0.802	0.566	9e-36
18396594	143	SWIB/MDM2 domain-containing protein [Ara	0.985	0.944	0.565	2e-35
224123994	126	predicted protein [Populus trichocarpa]	0.897	0.976	0.595	4e-35
21593643	143	unknown [Arabidopsis thaliana]	0.985	0.944	0.565	4e-35
297833030	145	hypothetical protein ARALYDRAFT_477604 [	0.970	0.917	0.557	2e-34
255565970	134	brg-1 associated factor, putative [Ricin	0.963	0.985	0.631	4e-31
225436221	128	PREDICTED: upstream activation factor su	0.934	1.0	0.576	1e-30
225427597	115	PREDICTED: upstream activation factor su	0.824	0.982	0.507	3e-27
357146513	135	PREDICTED: protein TRI1-like [Brachypodi	0.956	0.970	0.477	6e-27
356538435	132	PREDICTED: upstream activation factor su	0.620	0.643	0.647	8e-27

>gi|449432287|ref|XP_004133931.1| PREDICTED: uncharacterized protein LOC101218027 [Cucumis sativus]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/150 (56%), Positives = 101/150 (67%), Gaps = 24/150 (16%)

Query: 7   RVFNGCRALLAPAKSSAAASSAASTKAKSKTTKK--PRAKSPVKRGAP------------ 52
           RVF  CRALLAP+KSSA   +  +T  KSKTT K  P+ K P  +  P            
Sbjct: 10  RVFRACRALLAPSKSSA---TVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAGVAATPE 66

Query: 53  -------TRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREIL 105
                  +RP+GI KV+ VSPAL+ FLG  EASRSDAV QIW+++K HNLQNP+NKREI 
Sbjct: 67  PKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPDNKREIY 126

Query: 106 CDEKLKAIFEGKNAVGFLEIGKLLSPHFVK 135
           CD+KLKAIFEG+  VGFLEIGK L+ HFVK
Sbjct: 127 CDDKLKAIFEGREKVGFLEIGKSLARHFVK 156

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396594|ref|NP_566210.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gi|6091763|gb|AAF03473.1|AC009327_12 hypothetical protein [Arabidopsis thaliana] gi|26450613|dbj|BAC42418.1| unknown protein [Arabidopsis thaliana] gi|28372894|gb|AAO39929.1| At3g03590 [Arabidopsis thaliana] gi|332640439|gb|AEE73960.1| SWIB/MDM2 domain-containing protein [Arabidopsis thaliana]

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 102/145 (70%), Gaps = 10/145 (6%)

Query: 1   MSSAAARVFNGCRALLAPA-KSSAAASSAASTKAKSKTTKKPR-------AKSPVKRGAP 52
           MSS AA VF G R+LLAPA +++++  SA STK  +   K          + SP K+   
Sbjct: 1   MSSVAAMVFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTP- 59

Query: 53  TRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKA 112
            R TGI KV+PVSP LA+FLG  E SR+DA++ IW ++K+H+LQNP +KREI CDE LK 
Sbjct: 60  -RSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKL 118

Query: 113 IFEGKNAVGFLEIGKLLSPHFVKTA 137
           IFEGK+ VGFLEI KLLSPHFVKTA
Sbjct: 119 IFEGKDKVGFLEISKLLSPHFVKTA 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123994|ref|XP_002319215.1| predicted protein [Populus trichocarpa] gi|222857591|gb|EEE95138.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 98/136 (72%), Gaps = 13/136 (9%)

Query: 1   MSSAAARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISK 60
           MS AA+RVF  CRALLAPAK + A          SKTT KP+AK+      P  P GI K
Sbjct: 1   MSFAASRVFKACRALLAPAKPATA----------SKTTPKPKAKA--TSTTPGTPRGILK 48

Query: 61  VSPVSPALAKFLGA-PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNA 119
            +PVSP L  FLG  PE+SR++AV++IWAH+K HNLQNP NK+EI+CD KLKAIF+G++ 
Sbjct: 49  PNPVSPVLGDFLGGVPESSRAEAVKKIWAHIKLHNLQNPTNKKEIICDAKLKAIFDGRDK 108

Query: 120 VGFLEIGKLLSPHFVK 135
           VGFL+IGKLLS HF K
Sbjct: 109 VGFLDIGKLLSAHFPK 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593643|gb|AAM65610.1| unknown [Arabidopsis thaliana]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 102/145 (70%), Gaps = 10/145 (6%)

Query: 1   MSSAAARVFNGCRALLAPA-KSSAAASSAASTKAKSKTTKKPR-------AKSPVKRGAP 52
           MSS AA VF G R+LLAPA +++++  SA STK  +   K          + SP K+   
Sbjct: 1   MSSVAAMVFRGARSLLAPASRATSSLVSARSTKKPAAKPKAKAKPKPKAKSDSPAKKTP- 59

Query: 53  TRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKA 112
            R TGI KV+PVSP LA+FLG  E SR+DA++ IW ++K+H+LQNP +KREI CDE LK 
Sbjct: 60  -RSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKL 118

Query: 113 IFEGKNAVGFLEIGKLLSPHFVKTA 137
           IFEGK+ VGFLEI KLLSPHFVKTA
Sbjct: 119 IFEGKDKVGFLEISKLLSPHFVKTA 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833030|ref|XP_002884397.1| hypothetical protein ARALYDRAFT_477604 [Arabidopsis lyrata subsp. lyrata] gi|297330237|gb|EFH60656.1| hypothetical protein ARALYDRAFT_477604 [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 102/149 (68%), Gaps = 16/149 (10%)

Query: 1   MSSAAARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPR------------AKSPVK 48
           MSS AA VF G R+LLAPA  S A SS  ST +  KT  K +            ++SP K
Sbjct: 1   MSSVAAMVFRGARSLLAPA--SRATSSLVSTGSTKKTAAKTKAKAKAKPKPKAKSESPAK 58

Query: 49  RGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDE 108
           +    R TG+ KV+PVSP LA+FLG  E +R+DA++ IW ++K+H+LQNP +KREI CDE
Sbjct: 59  KTP--RSTGLFKVTPVSPVLAQFLGTGETTRTDAIKGIWTYIKSHDLQNPADKREIFCDE 116

Query: 109 KLKAIFEGKNAVGFLEIGKLLSPHFVKTA 137
            LK IFEGK+ VGFLEI KLLSPHFVKTA
Sbjct: 117 TLKLIFEGKDKVGFLEISKLLSPHFVKTA 145

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565970|ref|XP_002523973.1| brg-1 associated factor, putative [Ricinus communis] gi|223536700|gb|EEF38341.1| brg-1 associated factor, putative [Ricinus communis]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

Query: 6   ARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVS 65
           +RVF G RALLAP KS+AAA++AA+  +KS  TKK  A +   +  P R TGI K +PVS
Sbjct: 2   SRVFRGYRALLAPTKSAAAAAAAAAAPSKSTATKKSAAAAVKPKDKPVRATGILKAAPVS 61

Query: 66  PALAKFLGA-PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLE 124
           PAL++FLG  PEASR+D V++IW H+K HNLQNP NK+EI CDEKLK IF+GK  VGFLE
Sbjct: 62  PALSEFLGGVPEASRTDVVKKIWDHIKLHNLQNPTNKKEIFCDEKLKTIFDGKEKVGFLE 121

Query: 125 IGKLLSPHFVKTA 137
           IGKLLS HFVK+ 
Sbjct: 122 IGKLLSRHFVKSG 134

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436221|ref|XP_002270166.1| PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera] gi|147798865|emb|CAN68050.1| hypothetical protein VITISV_015104 [Vitis vinifera] gi|296090194|emb|CBI40013.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 93/137 (67%), Gaps = 9/137 (6%)

Query: 1   MSSAAARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISK 60
           MS  A   F   R LLA     AA SS++   A  KT   PR  +      P R  GI+K
Sbjct: 1   MSGIAMGFFKNSRVLLA-----AARSSSSPAAATKKTPAPPRTAA----KGPPRSGGITK 51

Query: 61  VSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAV 120
             PVSPAL KFLG PEASR++AV++IW H+K +NLQNP NKREILCDEKLK++FEGK+ V
Sbjct: 52  PVPVSPALRKFLGVPEASRAEAVKKIWEHIKLNNLQNPTNKREILCDEKLKSVFEGKDKV 111

Query: 121 GFLEIGKLLSPHFVKTA 137
           GFLEIGKLLS HF+KT 
Sbjct: 112 GFLEIGKLLSHHFIKTV 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427597|ref|XP_002270707.1| PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera] gi|296085458|emb|CBI29190.3| unnamed protein product [Vitis vinifera]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 21/134 (15%)

Query: 5   AARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPV 64
            +RV  GCRAL+  AK++A A++                   +++G      GI+K  PV
Sbjct: 2   GSRVLGGCRALMEAAKANANANTNTKV---------------IRQGG-----GITKPVPV 41

Query: 65  SPALAKFLGA-PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
           SP L KFLG  P+ASRS A++++W H+K HNLQNP NK+EI CDEKLK IF+GK+ VGFL
Sbjct: 42  SPQLGKFLGGVPQASRSLAIKKVWEHIKLHNLQNPTNKKEICCDEKLKTIFDGKDKVGFL 101

Query: 124 EIGKLLSPHFVKTA 137
           EI KLLSPHFVK  
Sbjct: 102 EIAKLLSPHFVKIG 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357146513|ref|XP_003574019.1| PREDICTED: protein TRI1-like [Brachypodium distachyon]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 90/136 (66%), Gaps = 5/136 (3%)

Query: 2   SSAAARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKV 61
           S+AAAR+F GCRAL+    SS+AA+      + S     P+  +           GI + 
Sbjct: 3   SAAAARIFRGCRALM----SSSAAAGGKRPASASAAATAPKVTTKADAAEAKELRGIMRP 58

Query: 62  SPVSPALAKF-LGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAV 120
            PVS AL +F  GAPE SR++A++ +WAH+K +NLQNP N++EI CDEKLK+IF G++ V
Sbjct: 59  VPVSDALRRFPGGAPEISRANAIKIVWAHIKANNLQNPANRKEINCDEKLKSIFSGRDKV 118

Query: 121 GFLEIGKLLSPHFVKT 136
           G +EI +LLSPHF+KT
Sbjct: 119 GMMEISRLLSPHFMKT 134

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538435|ref|XP_003537709.1| PREDICTED: upstream activation factor subunit UAF30-like [Glycine max]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query: 53  TRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKA 112
           T  +GI KV PVS  L  FLGAP+ SR+DAV+++WA++K  NLQNP NK+EI CDEKLK 
Sbjct: 48  TTNSGIQKVVPVSSELGDFLGAPQVSRTDAVKKVWAYIKLQNLQNPANKKEIFCDEKLKT 107

Query: 113 IFEGKNAVGFLEIGKLLSPHFVKTA 137
           IFEGK+ VGF EI KLLS HFVK+ 
Sbjct: 108 IFEGKDKVGFTEIAKLLSSHFVKSG 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2096404	143	AT3G03590 "AT3G03590" [Arabido	1.0	0.958	0.503	7.9e-30
TAIR|locus:505006294	109	AT2G35605 "AT2G35605" [Arabido	0.642	0.807	0.633	1.9e-26
TAIR|locus:2116189	144	AT4G34290 "AT4G34290" [Arabido	0.598	0.569	0.602	2.9e-23
TAIR|locus:2060469	141	AT2G14880 "AT2G14880" [Arabido	0.583	0.567	0.587	6.1e-23
TAIR|locus:2028671	112	AT1G31760 "AT1G31760" [Arabido	0.583	0.714	0.587	4.9e-21
SGD|S000005821	228	UAF30 "Subunit of UAF (upstrea	0.620	0.372	0.460	2.6e-15
TAIR|locus:2132055	385	AT4G22360 "AT4G22360" [Arabido	0.576	0.205	0.412	7.4e-14
TAIR|locus:2010197	372	AT1G49520 "AT1G49520" [Arabido	0.591	0.217	0.390	1.4e-13
SGD|S000004846	226	TRI1 "Non-essential sumoylated	0.598	0.362	0.441	2.7e-13
POMBASE|SPCC285.17	233	spp27 "RNA polymerase I upstre	0.496	0.291	0.441	1.2e-12

TAIR|locus:2096404 AT3G03590 "AT3G03590" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 72/143 (50%), Positives = 85/143 (59%)

Query:     1 MSSAAARVFNGCRALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VKRGAPT----R 54
             MSS AA VF G R+LL                                 K  +P     R
Sbjct:     1 MSSVAAMVFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPR 60

Query:    55 PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIF 114
              TGI KV+PVSP LA+FLG  E SR+DA++ IW ++K+H+LQNP +KREI CDE LK IF
Sbjct:    61 STGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIF 120

Query:   115 EGKNAVGFLEIGKLLSPHFVKTA 137
             EGK+ VGFLEI KLLSPHFVKTA
Sbjct:   121 EGKDKVGFLEISKLLSPHFVKTA 143

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:505006294 AT2G35605 "AT2G35605" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 57/90 (63%), Positives = 68/90 (75%)

Query:    50 GAPT--RPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD 107
             GA T  + TGI KV PVS  LA F+G  E SR+ AV++IW ++K +NLQNP NKREILCD
Sbjct:    20 GAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCD 79

Query:   108 EKLKAIFEGKNAVGFLEIGKLLSPHFVKTA 137
             E+LK IF GK+ VGFLEI KLLS HF K+A
Sbjct:    80 EQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116189 AT4G34290 "AT4G34290" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 50/83 (60%), Positives = 64/83 (77%)

Query:    53 TR-PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLK 111
             TR P GI K  PVS A+   +G PE  R+ A+++IWA++K H+LQ+P+NKR+ILCDEKLK
Sbjct:    62 TREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLK 121

Query:   112 AIFEGKNAVGFLEIGKLLSPHFV 134
              IFEGK  VGFLEI KL+ PHF+
Sbjct:   122 KIFEGKERVGFLEIAKLIGPHFL 144

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060469 AT2G14880 "AT2G14880" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 47/80 (58%), Positives = 63/80 (78%)

Query:    55 PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIF 114
             P GI K  PVSP +   +  PE +R+ A+++IWA++K H+LQ+P+NKREILCDEKLK IF
Sbjct:    62 PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIF 121

Query:   115 EGKNAVGFLEIGKLLSPHFV 134
             EG++ VGFLEI KL+ PHF+
Sbjct:   122 EGRDRVGFLEIAKLIGPHFL 141

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2028671 AT1G31760 "AT1G31760" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 47/80 (58%), Positives = 58/80 (72%)

Query:    57 GISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEG 116
             GI K  PVS  LA F G  E +R  A++++W +VK HNLQNP NK+EI CD+KLK IF+G
Sbjct:    32 GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query:   117 KNAVGFLEIGKLLSPHFVKT 136
             K+ VG  EI KLLSPHF K+
Sbjct:    92 KDKVGITEIMKLLSPHFPKS 111

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

SGD|S000005821 UAF30 "Subunit of UAF (upstream activation factor)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/89 (46%), Positives = 61/89 (68%)

Query:    48 KRGAPTR-PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILC 106
             K+G  ++ P    KV+ +S +LA  LG  E +R++ VR++WA++K HNLQNP NK+EILC
Sbjct:   110 KKGTVSKSPISTRKVT-LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILC 168

Query:   107 DEKLKAIFEGKNAVGFLEIGKLLSPHFVK 135
             DEKL+ I  GK+   F E+ K+L+ H  +
Sbjct:   169 DEKLELIL-GKSTNMF-EMHKILASHMTE 195

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0042790 "transcription of nuclear large rRNA transcript from RNA polymerase I promoter" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001168 "RNA polymerase I upstream control element sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0001165 "RNA polymerase I upstream control element sequence-specific DNA binding" evidence=IDA

GO:0006325 "chromatin organization" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0000500 "RNA polymerase I upstream activating factor complex" evidence=IDA

TAIR|locus:2132055 AT4G22360 "AT4G22360" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 7.4e-14, P = 7.4e-14
 Identities = 33/80 (41%), Positives = 54/80 (67%)

Query:    55 PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIF 114
             P G++KV  VSP L   +G P   R++ VRQ+WA+++ +NLQ+P NKR+I+CD+ L+ +F
Sbjct:   194 PGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDALRVVF 253

Query:   115 EGKNAVGFLEIGKLLSPHFV 134
             E  +     ++ KLL+ H +
Sbjct:   254 E-TDCTDMFKMNKLLAKHIL 272

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010197 AT1G49520 "AT1G49520" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 32/82 (39%), Positives = 54/82 (65%)

Query:    51 APTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKL 110
             A  R  G +K+  +SP L KFLG  + +R++ V+++WA+++ H+LQ+P N+R ILCDE L
Sbjct:    95 AKKRGGGFNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESL 154

Query:   111 KAIFEGKNAVGFLEIGKLLSPH 132
              ++F  K  +   ++ K L+ H
Sbjct:   155 HSLFRVKT-INMFQMNKALAKH 175

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

SGD|S000004846 TRI1 "Non-essential sumoylated protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 38/86 (44%), Positives = 55/86 (63%)

Query:    48 KRGAP-TRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILC 106
             K  +P +    + KV   +P L KFLG+ E  R+  V+ IW ++K H+LQNP+++REILC
Sbjct:   110 KNDSPDSNSISVRKVLLSAP-LQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILC 168

Query:   107 DEKLKAIFEGKNAVGFLEIGKLLSPH 132
             DEK++ IF GK    F  + KLL+ H
Sbjct:   169 DEKMEPIF-GKKMTMF-SMNKLLTKH 192

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA;IDA

POMBASE|SPCC285.17 spp27 "RNA polymerase I upstream activation factor complex subunit Spp27" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/68 (44%), Positives = 46/68 (67%)

Query:    48 KRGAPTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD 107
             KR        ++K   +SP LA+FLG  + SR   V+++W ++K H+LQ+P +KR ILCD
Sbjct:   107 KRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCD 166

Query:   108 EKLKAIFE 115
             +KLK++FE
Sbjct:   167 DKLKSVFE 174

GO:0000500 "RNA polymerase I upstream activating factor complex" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045943 "positive regulation of transcription from RNA polymerase I promoter" evidence=TAS

GO:0001168 "RNA polymerase I upstream control element sequence-specific DNA binding transcription factor activity" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT3G03590 SWIB complex BAF60b domain-containing protein; SWIB complex BAF60b domain-containing protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SWIB/MDM2 (InterPro-IPR003121); BEST Arabidopsis thaliana protein match is- SWIB complex BAF60b domain-containing protein (TAIR-AT2G35605.1); Has 852 Blast hits to 809 proteins in 169 species- Archae - 0; Bacteria - 136; Metazoa - 165; Fungi - 132; Plants - 207; Viruses - 8; Other Eukaryote [...] (143 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	137
pfam02201	76	pfam02201, SWIB, SWIB/MDM2 domain	1e-33
smart00151	77	smart00151, SWIB, SWI complex, BAF60b domains	8e-31
COG5531	237	COG5531, COG5531, SWIB-domain-containing proteins	3e-23
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	7e-22
PRK14724	987	PRK14724, PRK14724, DNA topoisomerase III; Provisi	3e-16

>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain

 Score =  111 bits (281), Expect = 1e-33
 Identities = 46/77 (59%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 58  ISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGK 117
           ++K  P+SP LAKFLGA E SR++ V+++W ++K HNLQ+P+NKR ILCDEKLK+IF G 
Sbjct: 1   LTKPFPLSPDLAKFLGAGELSRTEVVKKLWQYIKEHNLQDPKNKRIILCDEKLKSIF-GG 59

Query: 118 NAVGFLEIGKLLSPHFV 134
           + VGF E+ KLLS HF+
Sbjct: 60  DRVGFFEMSKLLSSHFI 76

This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2. Length = 76

>gnl|CDD|128456 smart00151, SWIB, SWI complex, BAF60b domains

 Score =  105 bits (263), Expect = 8e-31
 Identities = 41/78 (52%), Positives = 60/78 (76%), Gaps = 1/78 (1%)

Query: 58  ISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGK 117
           I+K   +SP LAK LGAPE +R++ ++++W ++K HNLQ+P+NKREILCD KL+ IF GK
Sbjct: 1   ITKKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIF-GK 59

Query: 118 NAVGFLEIGKLLSPHFVK 135
           + +   E+ KLL+PH +K
Sbjct: 60  DRMDMFEMNKLLTPHLIK 77

Length = 77

>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]

 Score = 90.2 bits (224), Expect = 3e-23
 Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 16  LAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGIS--KVSPVSPALAKFLG 73
                     SS  S+K       + +     K+ +       S  KV   SP LA  LG
Sbjct: 78  GKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEKVKL-SPKLAAILG 136

Query: 74  APEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133
               +R +AV+++W ++K HNLQ+P NKR ILCD KLK +  G + +   E+ K LSPH 
Sbjct: 137 LEPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVL-GSDPIDMFELTKPLSPHL 195

Query: 134 VK 135
           +K
Sbjct: 196 IK 197

Length = 237

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 89.9 bits (223), Expect = 7e-22
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 4/116 (3%)

Query: 20  KSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVSPALAKFLGAPEASR 79
           K + A   +ASTK K+  T K ++K+  K+    R      +   SPALA  +GA    R
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAG---PLYTPSPALAAMIGAEPVGR 805

Query: 80  SDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK 135
            +A +++W ++K H LQ+PENK+ I+ D KL+ +  G + +   ++ K LS H +K
Sbjct: 806 GEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVI-GPDPIDMFQLSKKLSQHLIK 860

Length = 860

>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional

 Score = 73.8 bits (181), Expect = 3e-16
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 5   AARVFNGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPV 64
           AA       A      +  AA  A    AK    K   AK+P K          + + P 
Sbjct: 860 AAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAGLKP- 918

Query: 65  SPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLE 124
           S ALA  +GA   +R + ++++W ++K +NLQ+P +KR I  D KL+ +F GK+ V   E
Sbjct: 919 SAALAAVIGAEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVF-GKDQVTMFE 977

Query: 125 IGKLLSPH 132
           +  ++  H
Sbjct: 978 LAGIVGKH 985

Length = 987

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
smart00151	77	SWIB SWI complex, BAF60b domains.	99.95
PF02201	76	SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SW	99.95
KOG1946	240	consensus RNA polymerase I transcription factor UA	99.94
COG5531	237	SWIB-domain-containing proteins implicated in chro	99.89
PRK14724	987	DNA topoisomerase III; Provisional	99.88
KOG2570	420	consensus SWI/SNF transcription activation complex	99.7
PRK06319	860	DNA topoisomerase I/SWI domain fusion protein; Val	99.58
KOG2522	560	consensus Filamentous baseplate protein Ligatin, c	94.85
PRK05350	82	acyl carrier protein; Provisional	86.74
PRK05828	84	acyl carrier protein; Validated	83.84

>smart00151 SWIB SWI complex, BAF60b domains

Probab=99.95  E-value=1.5e-28  Score=169.09  Aligned_cols=77  Identities=52%  Similarity=0.978  Sum_probs=74.3

Q ss_pred             CCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCCC
Q 032632           58 ISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK  135 (137)
Q Consensus        58 ~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~k  135 (137)
                      ++++|.||++|++|+|..++||+||++.||+|||.||||||+|++.|+||+.|++||| ++++.|++|+++|++||.+
T Consensus         1 ~~~~~~ls~~L~~~lg~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~-~~~v~~~~~~~ll~~Hl~~   77 (77)
T smart00151        1 ITKKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFG-KDRMDMFEMNKLLTPHLIK   77 (77)
T ss_pred             CCCcccCCHHHHHHhCCCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHC-cCeecHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999999999999999999999999999997 7899999999999999975

>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []

Probab=99.95  E-value=7.1e-30  Score=175.31  Aligned_cols=76  Identities=51%  Similarity=0.916  Sum_probs=70.8

Q ss_pred             CCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCC
Q 032632           58 ISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFV  134 (137)
Q Consensus        58 ~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~  134 (137)
                      |+++|+||++|++|+|..++||+||++.||+||++||||||+|++.|+||+.|+.||+ .++|++++|+++|++||+
T Consensus         1 ~~k~~~ls~~L~~~lg~~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~-~~~v~~~~i~~~l~~hl~   76 (76)
T PF02201_consen    1 FPKRFKLSPELAEFLGEDELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFG-KDSVNFFEIPKLLKPHLI   76 (76)
T ss_dssp             -EEEEHHHHHHHHHTT-SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHH-TSECSEEETTHHHHHHHE
T ss_pred             CCCCccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhC-CCeecHhhHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999999 599999999999999984

The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....

>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription]

Probab=99.94  E-value=1.1e-27  Score=195.98  Aligned_cols=81  Identities=57%  Similarity=0.976  Sum_probs=77.6

Q ss_pred             CCCCCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCC
Q 032632           55 PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFV  134 (137)
Q Consensus        55 ~~G~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~  134 (137)
                      +.|+++.+.||++|++|+|.++++|.||++.||+|||+||||||.||+.|+|||+|+.||++ +.|+|++|.+||.+||+
T Consensus        97 ~~g~~kl~~ls~~L~~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~~-k~v~~fem~KLL~~H~~  175 (240)
T KOG1946|consen   97 SWGSTKLIPLSPSLARFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFGK-KRVGMFEMLKLLTKHFL  175 (240)
T ss_pred             CcCcccccccCHHHHhhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhcc-CccceeeHHHHHHHhcc
Confidence            37999999999999999999999999999999999999999999999999999999999994 56999999999999998


Q ss_pred             CC
Q 032632          135 KT  136 (137)
Q Consensus       135 k~  136 (137)
                      +.
T Consensus       176 ~~  177 (240)
T KOG1946|consen  176 KN  177 (240)
T ss_pred             Cc
Confidence            74

>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]

Probab=99.89  E-value=1.2e-23  Score=171.82  Aligned_cols=81  Identities=41%  Similarity=0.757  Sum_probs=77.8

Q ss_pred             CCCCCCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632           54 RPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF  133 (137)
Q Consensus        54 ~~~G~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl  133 (137)
                      .++-..+.|.+|+.|+.|||..++||+|||+.||+|||.||||||+||++|.||++|+.||| .+.+.||+|.+.|.+|+
T Consensus       117 ~~~~~~~~~~lS~~La~ilG~~~~tr~~~v~~lw~YIk~h~lq~~~nkr~I~~D~~L~~v~g-~~p~~mf~~~k~l~~hl  195 (237)
T COG5531         117 KNSPSGEKVKLSPKLAAILGLEPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVLG-SDPIDMFELTKPLSPHL  195 (237)
T ss_pred             cccCCCCceecCHHHHHHhCCCCCCccHHHHHHHHHHHHhcCCCccccceecccHHHHHHhC-CCchhhhhhhcccccce
Confidence            35667899999999999999999999999999999999999999999999999999999999 89999999999999999


Q ss_pred             CC
Q 032632          134 VK  135 (137)
Q Consensus       134 ~k  135 (137)
                      ++
T Consensus       196 ~~  197 (237)
T COG5531         196 IK  197 (237)
T ss_pred             ec
Confidence            87

>PRK14724 DNA topoisomerase III; Provisional

Probab=99.88  E-value=3.8e-23  Score=194.63  Aligned_cols=76  Identities=32%  Similarity=0.595  Sum_probs=73.9

Q ss_pred             CCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCC
Q 032632           58 ISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFV  134 (137)
Q Consensus        58 ~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~  134 (137)
                      +..+|.|||+|++|||..++||++|++.||+|||+||||||.||+.|+||++|+.||| +++|.|++|+++|++||.
T Consensus       912 ~~~~~~ls~~La~~lg~~~~~r~~v~~~lW~YIK~~~Lqdp~~k~~i~cD~~L~~vfg-~~~~~~~~~~~~l~~hl~  987 (987)
T PRK14724        912 PAAGLKPSAALAAVIGAEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVFG-KDQVTMFELAGIVGKHLS  987 (987)
T ss_pred             cccccCCCHHHHHHhCCCcCCHHHHHHHHHHHHHHccCCCcccCCeeccchHHHHHhC-CCcccHHHHHHHHHHhcC
Confidence            7789999999999999999999999999999999999999999999999999999998 899999999999999984

>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription]

Probab=99.70  E-value=1e-17  Score=145.50  Aligned_cols=78  Identities=35%  Similarity=0.602  Sum_probs=74.1

Q ss_pred             CCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCCCC
Q 032632           58 ISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVKT  136 (137)
Q Consensus        58 ~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~k~  136 (137)
                      -...|++||.|+.+||+.+.||++|+..||+|||.|+||||+++.+|.||..|+++|| ++++.|.+|+.+|++||.+.
T Consensus       205 ~P~~fklsp~La~lLGi~t~Trp~iI~alWqYIk~n~Lqd~~e~~~incD~~l~qif~-~~rl~F~elp~~l~~lL~P~  282 (420)
T KOG2570|consen  205 QPEEFKLSPRLANLLGIHTGTRPDIVTALWQYIKTNKLQDPEDSDFINCDKALEQIFG-VDRLKFPELPQLLNPLLSPP  282 (420)
T ss_pred             CCcccccCHHHHHHhhhccCcchHHHHHHHHHHHHhccCCcccchhhcchHHHHHhhc-ccccccccchhhhhhccCCC
Confidence            3455999999999999999999999999999999999999999999999999999998 99999999999999999863

>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated

Probab=99.58  E-value=1.4e-15  Score=142.00  Aligned_cols=77  Identities=35%  Similarity=0.658  Sum_probs=73.1

Q ss_pred             CCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCCC
Q 032632           58 ISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK  135 (137)
Q Consensus        58 ~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~k  135 (137)
                      ...+|.+|++|+.++|..+++|.++++.||+|||+|+||||+||+.|.||++|+++|+ ++.+.|++|+++|++||.|
T Consensus       784 ~~~~~~~S~~La~~~g~~~~sr~~~~~~lw~yIk~~~lqdp~~Kr~i~~d~kl~kvf~-~~~~~~~~~~k~l~~hl~~  860 (860)
T PRK06319        784 AGPLYTPSPALAAMIGAEPVGRGEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVIG-PDPIDMFQLSKKLSQHLIK  860 (860)
T ss_pred             cccccccccccccccCcCccCchHHHHHHHHHHHHhcccCccccccCCCchhhhhhhC-cCccchhhhHHHHHhhhcC
Confidence            3456889999999999999999999999999999999999999999999999999998 8999999999999999875

>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]

Probab=94.85  E-value=0.048  Score=49.43  Aligned_cols=58  Identities=16%  Similarity=0.154  Sum_probs=48.1

Q ss_pred             CCccccCCHHHHhhh---CC---CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhC
Q 032632           58 ISKVSPVSPALAKFL---GA---PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFE  115 (137)
Q Consensus        58 ~~k~~~lSpeLa~fL---G~---~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFg  115 (137)
                      +...|+.+.-...++   |.   +-.|-+||...+.+||+.|||-|+.||..|+.|+-|.+...
T Consensus       357 i~~lYk~~~~~~~Lf~evg~~kg~lyt~seir~~V~kYi~knnLad~~nKg~VrLDpILfd~~~  420 (560)
T KOG2522|consen  357 ILTLYKPFNLAKDLFKEVGLAKGTLYTSSEIRSAVSKYISKNNLADTKNKGKVRLDPILFDMVN  420 (560)
T ss_pred             eeeeeccchHHHHHHHhcCccccceeeHHHHHHHHHHHhhhhhccccccCCcEEeccHHHHHHH
Confidence            456677776555555   54   46899999999999999999999999999999999988665

>PRK05350 acyl carrier protein; Provisional

Probab=86.74  E-value=0.62  Score=31.54  Aligned_cols=53  Identities=9%  Similarity=0.137  Sum_probs=43.6

Q ss_pred             cCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632           77 ASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF  133 (137)
Q Consensus        77 ~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl  133 (137)
                      ++|.++...|+++|.+. +.-+  ...|.+|..|..-+| -|++.+.+|.-.|..+|
T Consensus         2 m~~~~i~~~v~~ii~~~-~~~~--~~~i~~d~~l~~dlg-~DSld~veli~~lE~~f   54 (82)
T PRK05350          2 MTREEILERLRAILVEL-FEID--PEDITPEANLYEDLD-LDSIDAVDLVVHLQKLT   54 (82)
T ss_pred             CCHHHHHHHHHHHHHHH-hCCC--HHHCCCCccchhhcC-CCHHHHHHHHHHHHHHH
Confidence            68999999999999987 4322  236999999988886 89999999988888776

>PRK05828 acyl carrier protein; Validated

Probab=83.84  E-value=1.6  Score=30.39  Aligned_cols=53  Identities=13%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             cCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632           77 ASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF  133 (137)
Q Consensus        77 ~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl  133 (137)
                      |||.+|..+|-+.|.+.++.-+.  ..|.+|..|.+ +| -|++.+.+|.-.|..+|
T Consensus         1 m~~~eI~~~i~~ii~e~~~~~~~--d~i~~~~~~~d-Lg-~DSLd~velv~~lE~~f   53 (84)
T PRK05828          1 MQEMEILLKIKEIAKKKNFAVTL--DESNINKPYRE-LK-IDSLDMFSIIVSLESEF   53 (84)
T ss_pred             CCHHHHHHHHHHHHHHhccCCCc--ccccCCCCHHh-cC-CCHHHHHHHHHHHHHHH
Confidence            68999999999999886554322  25778888877 76 78999988888877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
1uhr_A	93	Solution Structure Of The Swib Domain Of Mouse Brg1		3e-08
1v31_A	93	Solution Structure Of The SwibMDM2 DOMAIN OF THE Hy		1e-04

>pdb|1UHR|A Chain A, Solution Structure Of The Swib Domain Of Mouse Brg1- Associated Factor 60a Length = 93

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 64  VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
           + P LA+ LG    +R   ++ +W ++KTH LQ+P  +  +LCD+ L+ IFE +  + F 
Sbjct: 14  LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQR-MKFS 72
Query: 124 EIGKLL 129
           EI + L
Sbjct: 73  EIPQRL 78

>pdb|1V31|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE Hypothetical Protein At5g14170 From Arabidopsis Thaliana Length = 93

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 56  TGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFE 115
           +G+ +   +S AL   LG    +R   +  IW +VK   LQNP +     CD  L+ +F 
Sbjct: 6   SGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF- 64
Query: 116 GKNAVGFLEIGKLLSPHF 133
           G+  + F  + + +S H 
Sbjct: 65  GEEKLKFTMVSQKISHHL 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
1v31_A	93	Hypothetical protein RAFL11-05-P19; SWI/SNF comple	9e-30
1uhr_A	93	SWI/SNF related, matrix associated, actin dependen	1e-27
1v32_A	101	AT5G08430, hypothetical protein RAFL09-47-K03; SWI	2e-26

>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 93

 Score =  102 bits (256), Expect = 9e-30
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 52  PTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLK 111
            +  +G+ +   +S AL   LG    +R   +  IW +VK   LQNP +     CD  L+
Sbjct: 2   SSGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQ 61

Query: 112 AIFEGKNAVGFLEIGKLLSPHFVK 135
            +F G+  + F  + + +S H   
Sbjct: 62  KVF-GEEKLKFTMVSQKISHHLSP 84

>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Length = 93

 Score = 97.2 bits (242), Expect = 1e-27
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 52  PTRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLK 111
            +  +G      + P LA+ LG    +R   ++ +W ++KTH LQ+P  +  +LCD+ L+
Sbjct: 2   SSGSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQ 61

Query: 112 AIFEGKNAVGFLEIGKLLSPHFVK 135
            IF     + F EI + L    + 
Sbjct: 62  QIF-ESQRMKFSEIPQRLHALLMP 84

>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 101

 Score = 94.1 bits (234), Expect = 2e-26
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 65  SPALAKFLG------APEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKN 118
           S  L +FL       +   SR D    I  ++    L +P NK++++CD++L  +F G  
Sbjct: 17  SRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF-GTR 75

Query: 119 AVGFLEIGKLLSPHFVKTA 137
            +  +++  LL  H+ +  
Sbjct: 76  TIFRMKVYDLLEKHYKENQ 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
1v31_A	93	Hypothetical protein RAFL11-05-P19; SWI/SNF comple	99.97
1uhr_A	93	SWI/SNF related, matrix associated, actin dependen	99.96
1v32_A	101	AT5G08430, hypothetical protein RAFL09-47-K03; SWI	99.96
3dac_M	130	MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X	97.43
3fea_A	100	MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, p	97.24
2z5s_M	140	MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylat	97.18
1ycq_A	107	MDM2, MDM2; anti-oncogene, DNA-binding, transcript	97.14
1z1m_A	119	Ubiquitin-protein ligase E3 MDM2; peptide-binding	97.11
2axi_A	115	Ubiquitin-protein ligase E3 MDM2; drug design, pro	96.78
2kwl_A	84	ACP, acyl carrier protein; structural genomics, se	86.54

>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1

Probab=99.97  E-value=3.3e-31  Score=187.80  Aligned_cols=81  Identities=27%  Similarity=0.501  Sum_probs=77.2

Q ss_pred             CCCCCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCC
Q 032632           55 PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFV  134 (137)
Q Consensus        55 ~~G~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~  134 (137)
                      ..++.++|.+|++|++|+|..++||+||++.||+|||+||||||+||+.|+||++|++||| +++|.|++|+++|++||.
T Consensus         5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg-~~~v~~~~~~klL~~Hl~   83 (93)
T 1v31_A            5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFG-EEKLKFTMVSQKISHHLS   83 (93)
T ss_dssp             CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSC-SSEEETTTTHHHHHHHCB
T ss_pred             CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhC-CCcccHHHHHHHHHHhcC
Confidence            4667899999999999999999999999999999999999999999999999999999997 899999999999999997


Q ss_pred             CC
Q 032632          135 KT  136 (137)
Q Consensus       135 k~  136 (137)
                      +.
T Consensus        84 p~   85 (93)
T 1v31_A           84 PP   85 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1

Probab=99.96  E-value=1.5e-30  Score=184.56  Aligned_cols=79  Identities=32%  Similarity=0.603  Sum_probs=75.4

Q ss_pred             CCCCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCCC
Q 032632           56 TGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK  135 (137)
Q Consensus        56 ~G~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~k  135 (137)
                      ..-.++|.+|++|++|+|..++||+||++.||+|||+||||||+||+.|+||++|++||| +++|.|++|+++|++||.+
T Consensus         6 ~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg-~~~v~~~~~~klL~~Hl~p   84 (93)
T 1uhr_A            6 SGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE-SQRMKFSEIPQRLHALLMP   84 (93)
T ss_dssp             SSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTC-CSSEEGGGSHHHHHHHEEC
T ss_pred             ccCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhC-CCcccHHHHHHHHHHhcCC
Confidence            445678999999999999999999999999999999999999999999999999999997 8999999999999999976

>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1

Probab=99.96  E-value=2.2e-29  Score=181.61  Aligned_cols=76  Identities=28%  Similarity=0.433  Sum_probs=71.4

Q ss_pred             ccccCCHHHHhhh---CC---CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632           60 KVSPVSPALAKFL---GA---PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF  133 (137)
Q Consensus        60 k~~~lSpeLa~fL---G~---~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl  133 (137)
                      -.-++|++|++||   |.   +++||++|++.||+|||+||||||+||+.|+||++|+.||| +++|.|++|+++|++||
T Consensus        12 ~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg-~~~v~~~~m~klL~~Hl   90 (101)
T 1v32_A           12 FVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFG-TRTIFRMKVYDLLEKHY   90 (101)
T ss_dssp             SSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTC-CSEEETTHHHHHHHHHS
T ss_pred             ecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHC-CCcccHHHHHHHHHHHc
Confidence            3348999999999   88   57999999999999999999999999999999999999997 89999999999999999


Q ss_pred             CCC
Q 032632          134 VKT  136 (137)
Q Consensus       134 ~k~  136 (137)
                      .++
T Consensus        91 ~~~   93 (101)
T 1v32_A           91 KEN   93 (101)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            874

>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}

Probab=97.43  E-value=0.00011  Score=54.78  Aligned_cols=77  Identities=13%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             CCccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHHH---HHHH
Q 032632           58 ISKVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFLE---IGKL  128 (137)
Q Consensus        58 ~~k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~e---l~kl  128 (137)
                      -...++--++|-.+|   |.  ...|+.||+-.+=+||-.+.|.||.+..+|.|. |.|-++|| ++++.+-|   |.+.
T Consensus        21 q~~~Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llG-v~sFSVkdp~~L~~m   99 (130)
T 3dac_M           21 EGTQVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE-VGSFSVKNPSPLYEM   99 (130)
T ss_dssp             --CEEEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-SSEEETTSCHHHHHH
T ss_pred             cceecCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccC-CcceeecCcHHHHHH
Confidence            334566777888887   44  679999999999999999999999999999996 78889998 89998877   8888


Q ss_pred             hcccCCC
Q 032632          129 LSPHFVK  135 (137)
Q Consensus       129 L~~Hl~k  135 (137)
                      |.++|+.
T Consensus       100 L~~NLv~  106 (130)
T 3dac_M          100 LKRNLVI  106 (130)
T ss_dssp             HHHHEEE
T ss_pred             HHhheec
Confidence            8888764

>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A

Probab=97.24  E-value=0.00022  Score=51.04  Aligned_cols=74  Identities=14%  Similarity=0.245  Sum_probs=63.0

Q ss_pred             cccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHH---HHHHHhcc
Q 032632           61 VSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFL---EIGKLLSP  131 (137)
Q Consensus        61 ~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~---el~klL~~  131 (137)
                      .++--++|-.+|   |.  ...|+.||+..+=+||-.+.|.||.+..+|.|. |.|-++|| ++++.+-   .|.+.|.+
T Consensus        15 ~Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G-~~sFsvkdp~~l~~ml~~   93 (100)
T 3fea_A           15 QVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLG-RQSFSVKDPSPLYDMLRK   93 (100)
T ss_dssp             CBEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHT-CSEEETTCCHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccC-CcceeecCchHHHHHHHh
Confidence            456667788777   44  679999999999999999999999999999997 77888998 8988874   78888888


Q ss_pred             cCCC
Q 032632          132 HFVK  135 (137)
Q Consensus       132 Hl~k  135 (137)
                      ||+.
T Consensus        94 nLv~   97 (100)
T 3fea_A           94 NLVT   97 (100)
T ss_dssp             HEEC
T ss_pred             hcee
Confidence            8764

>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M

Probab=97.18  E-value=0.00037  Score=52.35  Aligned_cols=76  Identities=13%  Similarity=0.243  Sum_probs=61.3

Q ss_pred             CCCccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHHH---HHH
Q 032632           57 GISKVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFLE---IGK  127 (137)
Q Consensus        57 G~~k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~e---l~k  127 (137)
                      |-...++--++|-.||   |.  ...|+-||+-.|-+||-.+.|.|+.+..+|.|. |.|-+||| ++++.+-|   +.+
T Consensus        19 ~e~~~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~G-v~sFSVKdp~~ly~   97 (140)
T 2z5s_M           19 GEGTQVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE-VGSFSVKNPSPVYE   97 (140)
T ss_dssp             -CCCCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-SSEEETTBCHHHHH
T ss_pred             cccceecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHH
Confidence            3334788888999998   44  679999999999999999999999999999997 77799998 88887743   445


Q ss_pred             HhcccC
Q 032632          128 LLSPHF  133 (137)
Q Consensus       128 lL~~Hl  133 (137)
                      .|.+.|
T Consensus        98 ML~~NL  103 (140)
T 2z5s_M           98 MLKRNL  103 (140)
T ss_dssp             HHHHHE
T ss_pred             HHHHhc
Confidence            554443

>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1

Probab=97.14  E-value=0.00069  Score=49.02  Aligned_cols=74  Identities=18%  Similarity=0.342  Sum_probs=59.5

Q ss_pred             ccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHHH---HHHHhc
Q 032632           60 KVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFLE---IGKLLS  130 (137)
Q Consensus        60 k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~e---l~klL~  130 (137)
                      ..++-.+.|-.+|   |.  ...|+.||+..+-+||-.+.|.|+.+..+|.|. |.|-++|| ++++.+-+   +.+.|.
T Consensus        10 ~~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~   88 (107)
T 1ycq_A           10 KLVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFG-VQEFSVKEPRRLYAMIS   88 (107)
T ss_dssp             CCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-CSEEETTCHHHHHHHHH
T ss_pred             cccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHH
Confidence            3566677788887   43  679999999999999999999999999999997 77799998 88887754   445555


Q ss_pred             ccCC
Q 032632          131 PHFV  134 (137)
Q Consensus       131 ~Hl~  134 (137)
                      +.++
T Consensus        89 ~nLv   92 (107)
T 1ycq_A           89 RNLV   92 (107)
T ss_dssp             TTEE
T ss_pred             Hhcc
Confidence            5443

>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}

Probab=97.11  E-value=0.00039  Score=51.11  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=58.5

Q ss_pred             cccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHH---HHHHHhcc
Q 032632           61 VSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFL---EIGKLLSP  131 (137)
Q Consensus        61 ~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~---el~klL~~  131 (137)
                      .++-.++|-.+|   |.  ...|+.||+..+-+||-.+.|.|+.+..+|.|. |.|-+||| ++++.+-   .+.+.|.+
T Consensus        27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~~  105 (119)
T 1z1m_A           27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIYR  105 (119)
T ss_dssp             CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSC-CSCEETTCHHHHHHHHSC
T ss_pred             cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence            455556666666   44  679999999999999999999999999999997 77799998 8888774   55666666


Q ss_pred             cCC
Q 032632          132 HFV  134 (137)
Q Consensus       132 Hl~  134 (137)
                      .|+
T Consensus       106 nLv  108 (119)
T 1z1m_A          106 NLV  108 (119)
T ss_dssp             SCC
T ss_pred             hcc
Confidence            554

>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*

Probab=96.78  E-value=0.00055  Score=50.06  Aligned_cols=73  Identities=16%  Similarity=0.279  Sum_probs=58.8

Q ss_pred             ccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHH---HHHHHhc
Q 032632           60 KVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFL---EIGKLLS  130 (137)
Q Consensus        60 k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~---el~klL~  130 (137)
                      ..++-.++|-.+|   |.  ...|+.||+-.+-+||-.+.|.||.+..+|.|. |.|-+||| ++++.+-   .+.+.|.
T Consensus        10 ~~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~   88 (115)
T 2axi_A           10 TLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIY   88 (115)
T ss_dssp             CEEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHS-SSEEETTCHHHHHHHHH
T ss_pred             cccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHH
Confidence            3566677788887   43  578999999999999999999999999999997 77799998 8888774   4555555


Q ss_pred             ccC
Q 032632          131 PHF  133 (137)
Q Consensus       131 ~Hl  133 (137)
                      +-|
T Consensus        89 ~nL   91 (115)
T 2axi_A           89 RNL   91 (115)
T ss_dssp             TTE
T ss_pred             Hhc
Confidence            444

>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}

Probab=86.54  E-value=0.56  Score=29.99  Aligned_cols=57  Identities=14%  Similarity=0.242  Sum_probs=43.9

Q ss_pred             CCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632           73 GAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF  133 (137)
Q Consensus        73 G~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl  133 (137)
                      |...|+|.++...|.++|.+.--.++   ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus         1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~vel~~~le~~f   57 (84)
T 2kwl_A            1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLN-ADSLDIYELLYLLEEAF   57 (84)
T ss_dssp             CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSS-SCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcC-CCHHHHHHHHHHHHHHH
Confidence            45679999999999999988632332   46889999966676 68888888888877665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1uhra_	93	a.42.1.1 (A:) SWI/SNF related regulator of chromat	6e-29
d1v31a_	93	a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl	5e-28
d1v32a_	101	a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl	9e-24

>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.0 bits (247), Expect = 6e-29
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 54  RPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAI 113
             +G      + P LA+ LG    +R   ++ +W ++KTH LQ+P  +  +LCD+ L+ I
Sbjct: 4   GSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQI 63

Query: 114 FEGKNAVGFLEIGKLLSPHFVK 135
           F     + F EI + L    + 
Sbjct: 64  F-ESQRMKFSEIPQRLHALLMP 84

>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G14170 (rafl11-05-p19)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 96.8 bits (241), Expect = 5e-28
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 54  RPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAI 113
             +G+ +   +S AL   LG    +R   +  IW +VK   LQNP +     CD  L+ +
Sbjct: 4   GSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKV 63

Query: 114 FEGKNAVGFLEIGKLLSPHFVK 135
           F G+  + F  + + +S H   
Sbjct: 64  F-GEEKLKFTMVSQKISHHLSP 84

>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.4 bits (214), Expect = 9e-24
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 65  SPALAKFLG------APEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKN 118
           S  L +FL       +   SR D    I  ++    L +P NK++++CD++L  +F G  
Sbjct: 17  SRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF-GTR 75

Query: 119 AVGFLEIGKLLSPHFVKT 136
            +  +++  LL  H+ + 
Sbjct: 76  TIFRMKVYDLLEKHYKEN 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1v31a_	93	Hypothetical protein AT5G14170 (rafl11-05-p19) {Th	99.97
d1uhra_	93	SWI/SNF related regulator of chromatin (BRG1-assoc	99.97
d1v32a_	101	Hypothetical protein AT5G08430 (rafl09-47-k03) {Th	99.94
d2axia1	85	MDM2 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1ttva_	107	MDM2 {African clawed frog (Xenopus laevis) [TaxId:	97.97

>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G14170 (rafl11-05-p19)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=2.9e-33  Score=196.97  Aligned_cols=83  Identities=27%  Similarity=0.491  Sum_probs=79.6

Q ss_pred             CCCCCCCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhccc
Q 032632           53 TRPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPH  132 (137)
Q Consensus        53 ~~~~G~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~H  132 (137)
                      ++++||+++|+||++|++|||.+++||++|++.||+|||+||||||+||+.|+||+.|++||+ +++|.|++|+++|++|
T Consensus         3 ~~~~G~~~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqd~~nkr~I~~D~~L~~lfg-~~~v~~~~l~~~L~~H   81 (93)
T d1v31a_           3 SGSSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFG-EEKLKFTMVSQKISHH   81 (93)
T ss_dssp             SSCCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSC-SSEEETTTTHHHHHHH
T ss_pred             CCCCCCcCCccCCHHHHHHHCcCcCcHHHHHHHHHHHHHHhCCCCCCCCCEEecCHHHHHHhC-CCcccHHHHHHHHHHh
Confidence            347999999999999999999999999999999999999999999999999999999999997 8999999999999999


Q ss_pred             CCCC
Q 032632          133 FVKT  136 (137)
Q Consensus       133 l~k~  136 (137)
                      |.+.
T Consensus        82 l~p~   85 (93)
T d1v31a_          82 LSPP   85 (93)
T ss_dssp             CBCC
T ss_pred             CCCC
Confidence            9863

>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.7e-33  Score=196.24  Aligned_cols=82  Identities=30%  Similarity=0.579  Sum_probs=79.1

Q ss_pred             CCCCCCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632           54 RPTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF  133 (137)
Q Consensus        54 ~~~G~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl  133 (137)
                      ..+||.++|+||++|++|||.+++||+||++.||+|||+||||||+||++|+||+.|++||| +++|.|++|+++|++||
T Consensus         4 ~~sg~p~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqdp~nkr~I~cD~~L~~lfg-~~~v~~~~l~~~L~~Hl   82 (93)
T d1uhra_           4 GSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE-SQRMKFSEIPQRLHALL   82 (93)
T ss_dssp             CCSSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTC-CSSEEGGGSHHHHHHHE
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCCcCHHHHHHHHHHHHHHhcCCCCCCCCEEecCHHHHHHhC-CCeecHHHHHHHHHhhC
Confidence            47999999999999999999999999999999999999999999999999999999999997 89999999999999999


Q ss_pred             CCC
Q 032632          134 VKT  136 (137)
Q Consensus       134 ~k~  136 (137)
                      .+.
T Consensus        83 ~p~   85 (93)
T d1uhra_          83 MPP   85 (93)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            863

>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=3.8e-28  Score=173.50  Aligned_cols=80  Identities=25%  Similarity=0.367  Sum_probs=71.6

Q ss_pred             CCCCccc--cCCHHHHhhhC---C---CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHH
Q 032632           56 TGISKVS--PVSPALAKFLG---A---PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGK  127 (137)
Q Consensus        56 ~G~~k~~--~lSpeLa~fLG---~---~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~k  127 (137)
                      +|-...+  ..|++|++|||   .   +++||+||++.||+|||+||||||+|||.|+||++|++||| +++|+|++|++
T Consensus         6 ~~k~~~~~g~~S~eL~~FL~~~g~~~~~~~sR~eVtk~iw~YIK~nnLqdp~nkr~I~~D~~L~~Lfg-~~~v~~f~i~k   84 (101)
T d1v32a_           6 SGKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFG-TRTIFRMKVYD   84 (101)
T ss_dssp             CSSCCSSSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTC-CSEEETTHHHH
T ss_pred             CCCcccccCcCCHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHHHhcCCCCccCCEEccCHHHHHHhC-CCcccHHHHHH
Confidence            3444443  48999999984   3   57999999999999999999999999999999999999997 89999999999


Q ss_pred             HhcccCCCC
Q 032632          128 LLSPHFVKT  136 (137)
Q Consensus       128 lL~~Hl~k~  136 (137)
                      +|++||.++
T Consensus        85 ~l~~H~~~~   93 (101)
T d1v32a_          85 LLEKHYKEN   93 (101)
T ss_dssp             HHHHHSCSC
T ss_pred             HHHHHcCCc
Confidence            999999975

>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: MDM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.2e-06  Score=59.41  Aligned_cols=73  Identities=19%  Similarity=0.305  Sum_probs=62.4

Q ss_pred             cccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHHH---HHHHhcc
Q 032632           61 VSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFLE---IGKLLSP  131 (137)
Q Consensus        61 ~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~e---l~klL~~  131 (137)
                      .++..|.|-.+|   |.  +..|.-||+-.|-+||..++|.||.+.++|.|- |.|-++|| .+++++-|   |.+.|.+
T Consensus         3 lVrPkp~Ll~~L~~~GA~~~~fT~kqVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~l~g-v~sFsVk~~r~l~~ml~r   81 (85)
T d2axia1           3 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIYR   81 (85)
T ss_dssp             EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHS-SSEEETTCHHHHHHHHHT
T ss_pred             cccCcHHHHHHHHHcCCCcceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcC-CCceeecCcHHHHHHHHh
Confidence            345667888887   43  689999999999999999999999999999995 66999998 88887765   8888888


Q ss_pred             cCC
Q 032632          132 HFV  134 (137)
Q Consensus       132 Hl~  134 (137)
                      ||+
T Consensus        82 nLv   84 (85)
T d2axia1          82 NLV   84 (85)
T ss_dssp             TEE
T ss_pred             ccc
Confidence            874

>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: MDM2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.97  E-value=4.9e-06  Score=58.36  Aligned_cols=76  Identities=18%  Similarity=0.334  Sum_probs=64.9

Q ss_pred             CccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHHH---HHHHh
Q 032632           59 SKVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFLE---IGKLL  129 (137)
Q Consensus        59 ~k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~e---l~klL  129 (137)
                      ...++..|.|-.+|   |.  +..|.-||+-.|-+||..++|.|+.+.++|.|- |.|-+||| .+++.+-|   |.+.|
T Consensus         9 ~~lVrPkp~LL~~L~~~GA~~~~fT~keVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~llg-v~sFsVke~r~l~~ml   87 (107)
T d1ttva_           9 EKLVQPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFG-VQEFSVKEHRRIYAMI   87 (107)
T ss_dssp             CCCEEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHHTCBCSSCTTEECCSSCHHHHHHT-CSCEETTCHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHcCCCcceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcC-CCceeecCcHHHHHHH
Confidence            34577788999988   44  689999999999999999999999999999995 67999998 88887755   77779


Q ss_pred             cccCCC
Q 032632          130 SPHFVK  135 (137)
Q Consensus       130 ~~Hl~k  135 (137)
                      .+|++.
T Consensus        88 ~rnLv~   93 (107)
T d1ttva_          88 SRNLVS   93 (107)
T ss_dssp             HTTEEE
T ss_pred             Hhhhhc
Confidence            988863