Citrus Sinensis ID: 032638

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG
Secondary Structure (PSIPRED)
ccccccccccccccEEEccEEEEEEEcccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccEEEccccccccccHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
melalqslssasFSIITRDLKLRVctglhgkafssidiksqeqerklptvssalpeTAASVAIAATVVGAAATLLVRrtkgseeteiplktcedcggsgicpeckgegfvLKKLSEETAERARLTAKNMATRYTAG
Flexible Loop (DISEMBL)
MELALQSLSSASFSIITRDLKLRVCTGLHGKafssidiksqeqERKLPTVSSALPETAASVAIAATVVGAAATLLVrrtkgseeteiplktcedcggsgicpeCKGEGFVLKKLSEETAERArltaknmatrytag
Low Complexity Region (SEG)
MElalqslssasfsIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPEtaasvaiaatvvgaaatLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG
Disordered region (IsUnstruct)
***********SFSIITRDLKLRVCTGLHGKAFSSI*********************AASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLK************************
Disordered Region (DISOPRED)
********SSASFSIITRDLKLRVCTGLHGKAFSS*****************ALPETAASVAIAATVVGAAATLL*******************CGGSGICPECKGEGFVL*********************Y***
Disordered Region (DISEMBL)
********SSASFSIITRDLKLRVCTGLHGKAFSSIDIK***********SSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG
Disordered Region (DISPRO)
**L**Q*LSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKG*********TCEDCGGSGICPECKGEGFVLKKLSEETAERAR*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
297734936	927	unnamed protein product [Vitis vinifera]	0.970	0.142	0.683	2e-34
359479447	176	PREDICTED: uncharacterized protein LOC10	0.970	0.75	0.683	2e-34
224106816	163	predicted protein [Populus trichocarpa]	0.992	0.828	0.720	1e-33
7671406	148	putative protein [Arabidopsis thaliana]	0.875	0.804	0.569	2e-30
30692497	130	uncharacterized protein [Arabidopsis tha	0.764	0.8	0.679	2e-30
30692502	158	uncharacterized protein [Arabidopsis tha	0.764	0.658	0.679	4e-30
255565399	213	conserved hypothetical protein [Ricinus	0.764	0.488	0.740	1e-29
297815652	163	hypothetical protein ARALYDRAFT_484900 [	0.985	0.822	0.569	4e-28
359806852	148	uncharacterized protein LOC100779715 [Gl	0.867	0.797	0.655	3e-27
356542656	148	PREDICTED: uncharacterized protein LOC10	0.75	0.689	0.705	1e-26

>gi|297734936|emb|CBI17170.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 4/136 (2%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MELAL +L   +    +RD K  +         SS D+K Q Q RK+  VS ALPETAAS
Sbjct: 768 MELALHTLPLKT----SRDFKPHIHNAFDPDPISSTDVKLQAQRRKICRVSYALPETAAS 823

Query: 61  VAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAE 120
           VAIAATVVGAAATLLVRR++ SE TEIPLK CEDCGGSGIC EC GEGFVLKKLSE +AE
Sbjct: 824 VAIAATVVGAAATLLVRRSRPSEATEIPLKICEDCGGSGICSECNGEGFVLKKLSEASAE 883

Query: 121 RARLTAKNMATRYTAG 136
           +ARLTAKNMATRYTAG
Sbjct: 884 KARLTAKNMATRYTAG 899

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479447|ref|XP_002273853.2| PREDICTED: uncharacterized protein LOC100258439 [Vitis vinifera]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 103/136 (75%), Gaps = 4/136 (2%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MELAL +L   +    +RD K  +         SS D+K Q Q RK+  VS ALPETAAS
Sbjct: 17  MELALHTLPLKT----SRDFKPHIHNAFDPDPISSTDVKLQAQRRKICRVSYALPETAAS 72

Query: 61  VAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAE 120
           VAIAATVVGAAATLLVRR++ SE TEIPLK CEDCGGSGIC EC GEGFVLKKLSE +AE
Sbjct: 73  VAIAATVVGAAATLLVRRSRPSEATEIPLKICEDCGGSGICSECNGEGFVLKKLSEASAE 132

Query: 121 RARLTAKNMATRYTAG 136
           +ARLTAKNMATRYTAG
Sbjct: 133 KARLTAKNMATRYTAG 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106816|ref|XP_002314295.1| predicted protein [Populus trichocarpa] gi|222850703|gb|EEE88250.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/136 (72%), Positives = 106/136 (77%), Gaps = 1/136 (0%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MELA+ +LS  SFS   R+ KL+  T       SSID+K QEQ RK  TV  +LPETAAS
Sbjct: 1   MELAVHALSFTSFSK-NRESKLQGRTIPDPATCSSIDVKLQEQGRKTSTVCYSLPETAAS 59

Query: 61  VAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAE 120
           VAIAAT VGAA TLLVRR K SE  EIPLKTCEDCGGSGIC EC GEGFVLKKLSEE+AE
Sbjct: 60  VAIAATAVGAAITLLVRRNKPSEADEIPLKTCEDCGGSGICSECSGEGFVLKKLSEESAE 119

Query: 121 RARLTAKNMATRYTAG 136
           RARL+AKNMATRYTAG
Sbjct: 120 RARLSAKNMATRYTAG 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7671406|emb|CAB89320.1| putative protein [Arabidopsis thaliana]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 89/137 (64%), Gaps = 18/137 (13%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MEL + SLSS     +  DLK                  S ++ ++  TV  AL ETA S
Sbjct: 1   MELRVNSLSSQDVRFLNLDLK-----------------SSHQRAKRSSTVVPALAETAVS 43

Query: 61  VAIAATVVGAAATLLVRR-TKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETA 119
           +AIAATVVG AAT+LVRR  K SEE E  +K CE C GSGICPECKGEGFVLKKLS+  A
Sbjct: 44  IAIAATVVGTAATILVRRNNKASEEAEASMKECEACLGSGICPECKGEGFVLKKLSDANA 103

Query: 120 ERARLTAKNMATRYTAG 136
           E+ARL AKNMATRYTAG
Sbjct: 104 EKARLAAKNMATRYTAG 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692497|ref|NP_850656.1| uncharacterized protein [Arabidopsis thaliana] gi|26452206|dbj|BAC43191.1| unknown protein [Arabidopsis thaliana] gi|105829624|gb|ABF74699.1| At3g45050 [Arabidopsis thaliana] gi|332644462|gb|AEE77983.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 82/106 (77%), Gaps = 2/106 (1%)

Query: 33  FSSIDIKSQEQE-RKLPTVSSALPETAASVAIAATVVGAAATLLVRRT-KGSEETEIPLK 90
           F ++D+KS  Q  ++  TV  AL ETA S+AIAATVVG AAT+LVRR  K SEE E  +K
Sbjct: 25  FLNLDLKSSHQRAKRSSTVVPALAETAVSIAIAATVVGTAATILVRRNNKASEEAEASMK 84

Query: 91  TCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG 136
            CE C GSGICPECKGEGFVLKKLS+  AE+ARL AKNMATRYTAG
Sbjct: 85  ECEACLGSGICPECKGEGFVLKKLSDANAEKARLAAKNMATRYTAG 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30692502|ref|NP_190091.2| uncharacterized protein [Arabidopsis thaliana] gi|30692507|ref|NP_850657.1| uncharacterized protein [Arabidopsis thaliana] gi|42572581|ref|NP_974386.1| uncharacterized protein [Arabidopsis thaliana] gi|222423502|dbj|BAH19721.1| AT3G45050 [Arabidopsis thaliana] gi|332644463|gb|AEE77984.1| uncharacterized protein [Arabidopsis thaliana] gi|332644464|gb|AEE77985.1| uncharacterized protein [Arabidopsis thaliana] gi|332644465|gb|AEE77986.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/106 (67%), Positives = 82/106 (77%), Gaps = 2/106 (1%)

Query: 33  FSSIDIKSQEQE-RKLPTVSSALPETAASVAIAATVVGAAATLLVRRT-KGSEETEIPLK 90
           F ++D+KS  Q  ++  TV  AL ETA S+AIAATVVG AAT+LVRR  K SEE E  +K
Sbjct: 25  FLNLDLKSSHQRAKRSSTVVPALAETAVSIAIAATVVGTAATILVRRNNKASEEAEASMK 84

Query: 91  TCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG 136
            CE C GSGICPECKGEGFVLKKLS+  AE+ARL AKNMATRYTAG
Sbjct: 85  ECEACLGSGICPECKGEGFVLKKLSDANAEKARLAAKNMATRYTAG 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565399|ref|XP_002523690.1| conserved hypothetical protein [Ricinus communis] gi|223536994|gb|EEF38630.1| conserved hypothetical protein [Ricinus communis]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 87/104 (83%)

Query: 33  FSSIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTC 92
           +SSI +K Q+ +R   T+SSALPET AS+AIAA VVG AAT+LVRRTK +E  EI LKTC
Sbjct: 82  WSSIGVKLQKHKRNASTISSALPETTASLAIAAAVVGTAATVLVRRTKATETNEIQLKTC 141

Query: 93  EDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG 136
           EDC GSG+C ECKGEGFVLKKLSEE+AERARL AKNMATRYTA 
Sbjct: 142 EDCEGSGLCSECKGEGFVLKKLSEESAERARLNAKNMATRYTAA 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815652|ref|XP_002875709.1| hypothetical protein ARALYDRAFT_484900 [Arabidopsis lyrata subsp. lyrata] gi|297321547|gb|EFH51968.1| hypothetical protein ARALYDRAFT_484900 [Arabidopsis lyrata subsp. lyrata]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 93/137 (67%), Gaps = 3/137 (2%)

Query: 1   MELALQSLSSASFSIITRDLKLRVCTGLHGKAFSSIDIKSQEQERKLPTVSSALPETAAS 60
           MEL+L+ L S SF      L + +   +    F  ++     + R L TV+ AL ETA S
Sbjct: 1   MELSLK-LQSFSFPSSVSTLTISLTFEVLFFVFEGVNNARFLKTRSL-TVTPALAETAVS 58

Query: 61  VAIAATVVGAAATLLVRRT-KGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETA 119
           +AIAATVVG AAT+L RR+ K +EE E   K CE C GSGICPECKGEGFVLKKLS+  A
Sbjct: 59  IAIAATVVGTAATILARRSSKAAEEAEASTKECEACLGSGICPECKGEGFVLKKLSDANA 118

Query: 120 ERARLTAKNMATRYTAG 136
           E+ARLTAKNMATRYTAG
Sbjct: 119 EKARLTAKNMATRYTAG 135

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806852|ref|NP_001241314.1| uncharacterized protein LOC100779715 [Glycine max] gi|255640844|gb|ACU20705.1| unknown [Glycine max]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 94/119 (78%), Gaps = 1/119 (0%)

Query: 19  DLKLRVCTGLHGKAFS-SIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVR 77
           DL L V   +    FS S ++K Q Q R+L TVSSAL ETAAS+A+A TVVGAAATLLV+
Sbjct: 2   DLHLSVRLPVSLPCFSHSQNVKLQLQRRRLSTVSSALAETAASMAVAVTVVGAAATLLVK 61

Query: 78  RTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG 136
           R+K SE ++I  K CEDCGGSGIC ECKGEGFVL+K S+E+AE+AR+ AKNMATR+TAG
Sbjct: 62  RSKTSESSQIQFKACEDCGGSGICSECKGEGFVLRKRSDESAEKARVQAKNMATRFTAG 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542656|ref|XP_003539782.1| PREDICTED: uncharacterized protein LOC100778669 [Glycine max]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 86/102 (84%)

Query: 35  SIDIKSQEQERKLPTVSSALPETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCED 94
           S ++K Q Q R+L TVS AL ETAAS+A+A TVVGAAATLLV+R+K SE T+I  K CED
Sbjct: 19  SQNVKLQLQRRRLSTVSFALAETAASMAVAVTVVGAAATLLVKRSKTSESTQIQFKVCED 78

Query: 95  CGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG 136
           CGGSGIC ECKGEGFVL+K S+E+AE+AR+ AKNMATR+TAG
Sbjct: 79  CGGSGICSECKGEGFVLRKRSDESAEKARVQAKNMATRFTAG 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2075969	158	AT3G45050 "AT3G45050" [Arabido	0.764	0.658	0.556	6.8e-24

TAIR|locus:2075969 AT3G45050 "AT3G45050" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 59/106 (55%), Positives = 66/106 (62%)

Query:    33 FSSIDIKSQEQERKLP-TVSSALPEXXXXXXXXXXXXXXXXXLLVRRT-KGSEETEIPLK 90
             F ++D+KS  Q  K   TV  AL E                 +LVRR  K SEE E  +K
Sbjct:    25 FLNLDLKSSHQRAKRSSTVVPALAETAVSIAIAATVVGTAATILVRRNNKASEEAEASMK 84

Query:    91 TCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAKNMATRYTAG 136
              CE C GSGICPECKGEGFVLKKLS+  AE+ARL AKNMATRYTAG
Sbjct:    85 ECEACLGSGICPECKGEGFVLKKLSDANAEKARLAAKNMATRYTAG 130


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      136       107   0.00091  102 3  11 23  0.47    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  472 (50 KB)
  Total size of DFA:  95 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.62u 0.12s 10.74t   Elapsed:  00:00:01
  Total cpu time:  10.62u 0.12s 10.74t   Elapsed:  00:00:01
  Start:  Thu May  9 19:11:18 2013   End:  Thu May  9 19:11:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022196001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (160 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	0.002
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	0.002
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	0.003
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	0.003
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	0.004

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 5/28 (17%)

Query: 91  TCEDCGGSG-----ICPECKGEGFVLKK 113
           TC  C G+G      C +CKG+G V KK
Sbjct: 185 TCPTCNGTGKIIKDPCGKCKGKGRVKKK 212

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 76  VRRTKGSEETEIPLK-TCEDCGGSGI-----CPECKGEGFVLKK 113
           VRR +G+       + TC  CGG G      C  CKG+G V ++
Sbjct: 172 VRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKER 215

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 17/42 (40%)

Query: 89  LKTCEDCGGSG-----------------ICPECKGEGFVLKK 113
            KTC  CGG+G                  CP C GEG ++K+
Sbjct: 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKE 201

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)

Query: 90  KTCEDCGGSGI----CPECKGEGFVLKK 113
           +TC  CGG G+    C +C G G V+KK
Sbjct: 196 QTCPTCGGEGVLREPCSKCNGRGLVIKK 223

Length = 382

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 11/40 (27%)

Query: 84  ETEIPL---KTCEDCGGSG--------ICPECKGEGFVLK 112
           E EI +   ++CE C G+G         CP C G G V +
Sbjct: 135 EKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRR 174

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.14
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	96.5
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	96.23
PLN03165	111	chaperone protein dnaJ-related; Provisional	95.35
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	95.1
PRK14300	372	chaperone protein DnaJ; Provisional	95.06
PRK14284	391	chaperone protein DnaJ; Provisional	94.86
PRK14285	365	chaperone protein DnaJ; Provisional	94.74
PRK10767	371	chaperone protein DnaJ; Provisional	94.63
PRK14297	380	chaperone protein DnaJ; Provisional	94.6
PRK10767	371	chaperone protein DnaJ; Provisional	94.58
PRK14282	369	chaperone protein DnaJ; Provisional	94.56
PRK14295	389	chaperone protein DnaJ; Provisional	94.53
PRK14287	371	chaperone protein DnaJ; Provisional	94.47
PRK14300	372	chaperone protein DnaJ; Provisional	94.47
PRK14278	378	chaperone protein DnaJ; Provisional	94.47
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	94.43
PRK14288	369	chaperone protein DnaJ; Provisional	94.43
PRK14282	369	chaperone protein DnaJ; Provisional	94.43
PRK14276	380	chaperone protein DnaJ; Provisional	94.36
PRK14280	376	chaperone protein DnaJ; Provisional	94.31
PRK14286	372	chaperone protein DnaJ; Provisional	94.23
PRK14293	374	chaperone protein DnaJ; Provisional	94.21
PRK14279	392	chaperone protein DnaJ; Provisional	94.2
PRK14280	376	chaperone protein DnaJ; Provisional	94.19
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	94.16
PRK14296	372	chaperone protein DnaJ; Provisional	94.06
PRK14298	377	chaperone protein DnaJ; Provisional	94.05
PRK14296	372	chaperone protein DnaJ; Provisional	94.04
PRK14289	386	chaperone protein DnaJ; Provisional	94.04
PRK14284	391	chaperone protein DnaJ; Provisional	94.02
PRK14276	380	chaperone protein DnaJ; Provisional	93.98
PRK14285	365	chaperone protein DnaJ; Provisional	93.97
PRK14301	373	chaperone protein DnaJ; Provisional	93.95
PRK14288	369	chaperone protein DnaJ; Provisional	93.93
PRK14281	397	chaperone protein DnaJ; Provisional	93.91
PRK14277	386	chaperone protein DnaJ; Provisional	93.9
PRK14290	365	chaperone protein DnaJ; Provisional	93.88
PRK14279	392	chaperone protein DnaJ; Provisional	93.85
PRK14294	366	chaperone protein DnaJ; Provisional	93.72
PRK14286	372	chaperone protein DnaJ; Provisional	93.66
PRK14278	378	chaperone protein DnaJ; Provisional	93.65
PTZ00037	421	DnaJ_C chaperone protein; Provisional	93.59
PRK14293	374	chaperone protein DnaJ; Provisional	93.58
PRK14291	382	chaperone protein DnaJ; Provisional	93.56
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	93.54
PRK14298	377	chaperone protein DnaJ; Provisional	93.52
PRK14277	386	chaperone protein DnaJ; Provisional	93.52
PRK14297	380	chaperone protein DnaJ; Provisional	93.39
PRK14289	386	chaperone protein DnaJ; Provisional	93.32
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	93.3
PRK14287	371	chaperone protein DnaJ; Provisional	93.29
PRK14283	378	chaperone protein DnaJ; Provisional	93.29
PRK14295	389	chaperone protein DnaJ; Provisional	93.14
PRK14290	365	chaperone protein DnaJ; Provisional	92.98
PRK14291	382	chaperone protein DnaJ; Provisional	92.93
PRK14294	366	chaperone protein DnaJ; Provisional	92.91
PRK14301	373	chaperone protein DnaJ; Provisional	92.68
PRK14281	397	chaperone protein DnaJ; Provisional	92.59
PRK14292	371	chaperone protein DnaJ; Provisional	92.17
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	91.9
PTZ00037	421	DnaJ_C chaperone protein; Provisional	91.61
PRK14292	371	chaperone protein DnaJ; Provisional	91.25
PRK14283	378	chaperone protein DnaJ; Provisional	89.48
PF14369	35	zf-RING_3: zinc-finger	85.39
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	83.24
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	81.2
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	80.46

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.14  E-value=9.2e-05  Score=55.01  Aligned_cols=53  Identities=28%  Similarity=0.525  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHH----HHHhcCCCccccccccccccCCCcc--CCCCccCcceeeecC
Q 032638           62 AIAATVVGAAATL----LVRRTKGSEETEIPLKTCEDCGGSG--ICPECKGEGFVLKKL  114 (136)
Q Consensus        62 aiaa~vVGaAat~----Lvrr~k~~e~~E~~~k~Ce~C~GsG--iCpeCkGEGFVlK~L  114 (136)
                      +|.+++||-|+.+    |.--+--.++..+....|..|.|+|  .|+.|+|.|++..++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~   68 (111)
T PLN03165         10 AISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL   68 (111)
T ss_pred             hhhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe
Confidence            4555666666543    2222222334567788999999999  899999999998765

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=96.50  E-value=0.0018  Score=42.50  Aligned_cols=25  Identities=48%  Similarity=1.141  Sum_probs=13.1

Q ss_pred             ccccccccCCCcc-----------------CCCCccCcceee
Q 032638           87 IPLKTCEDCGGSG-----------------ICPECKGEGFVL  111 (136)
Q Consensus        87 ~~~k~Ce~C~GsG-----------------iCpeCkGEGFVl  111 (136)
                      .....|+.|.|+|                 .|+.|+|.|+++
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            3445666666666                 266666666665

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=96.23  E-value=0.0026  Score=50.79  Aligned_cols=26  Identities=31%  Similarity=0.830  Sum_probs=22.6

Q ss_pred             ccccccCCCccC-------CCCccCcceeeecC
Q 032638           89 LKTCEDCGGSGI-------CPECKGEGFVLKKL  114 (136)
Q Consensus        89 ~k~Ce~C~GsGi-------CpeCkGEGFVlK~L  114 (136)
                      ...|+.|+|+|.       |++|+|.|++-++.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~  131 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTV  131 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeE
Confidence            678999999983       99999999987653

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=95.35  E-value=0.0094  Score=44.40  Aligned_cols=29  Identities=34%  Similarity=0.907  Sum_probs=24.8

Q ss_pred             cccccccccCCCcc--CCCCccCcceeeecC
Q 032638           86 EIPLKTCEDCGGSG--ICPECKGEGFVLKKL  114 (136)
Q Consensus        86 E~~~k~Ce~C~GsG--iCpeCkGEGFVlK~L  114 (136)
                      ......|..|.|+|  +|+.|+|.|++-+-|
T Consensus        72 ~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~  102 (111)
T PLN03165         72 EKEVSKCINCDGAGSLTCTTCQGSGIQPRYL  102 (111)
T ss_pred             EEEEEECCCCCCcceeeCCCCCCCEEEeeee
Confidence            34567999999999  899999999987655

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=95.10  E-value=0.015  Score=38.20  Aligned_cols=22  Identities=45%  Similarity=1.342  Sum_probs=17.4

Q ss_pred             cccCCCccC--------CCCccCcceeeec
Q 032638           92 CEDCGGSGI--------CPECKGEGFVLKK  113 (136)
Q Consensus        92 Ce~C~GsGi--------CpeCkGEGFVlK~  113 (136)
                      |+.|.|+|.        |+.|+|.|+++..
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~   30 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRR   30 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEE
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEE
Confidence            788999997        9999999998765

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=95.06  E-value=0.014  Score=49.12  Aligned_cols=23  Identities=39%  Similarity=0.928  Sum_probs=14.6

Q ss_pred             cccccCCCccC--------CCCccCcceeee
Q 032638           90 KTCEDCGGSGI--------CPECKGEGFVLK  112 (136)
Q Consensus        90 k~Ce~C~GsGi--------CpeCkGEGFVlK  112 (136)
                      ..|+.|.|+|.        |+.|+|.|++..
T Consensus       146 ~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~  176 (372)
T PRK14300        146 VKCDTCHGSGSEKGETVTTCDACSGVGATRM  176 (372)
T ss_pred             cccCCCCCcccCCCCCCccCCCccCeEEEEE
Confidence            56777777763        666666665544

>PRK14284 chaperone protein DnaJ; Provisional

Probab=94.86  E-value=0.012  Score=49.72  Aligned_cols=11  Identities=55%  Similarity=1.241  Sum_probs=5.3

Q ss_pred             cccccCCCccC
Q 032638           90 KTCEDCGGSGI  100 (136)
Q Consensus        90 k~Ce~C~GsGi  100 (136)
                      +.|..|+|+|.
T Consensus       176 ~~C~~C~G~G~  186 (391)
T PRK14284        176 KVCDRCKGSGQ  186 (391)
T ss_pred             eecCccCCeeE
Confidence            34555555543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=94.74  E-value=0.015  Score=48.84  Aligned_cols=11  Identities=45%  Similarity=1.404  Sum_probs=5.8

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|.|.|++.
T Consensus       188 C~~C~G~G~~~  198 (365)
T PRK14285        188 CPKCYGNGKII  198 (365)
T ss_pred             cCCCCCccccc
Confidence            55555555543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=94.63  E-value=0.021  Score=47.64  Aligned_cols=11  Identities=45%  Similarity=1.431  Sum_probs=5.3

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|+|.|++.
T Consensus       184 C~~C~G~G~~~  194 (371)
T PRK10767        184 CPTCHGRGKII  194 (371)
T ss_pred             CCCCCCceeEC
Confidence            55555555443

>PRK14297 chaperone protein DnaJ; Provisional

Probab=94.60  E-value=0.02  Score=48.16  Aligned_cols=22  Identities=41%  Similarity=1.156  Sum_probs=13.9

Q ss_pred             cccccCCCccC--------CCCccCcceee
Q 032638           90 KTCEDCGGSGI--------CPECKGEGFVL  111 (136)
Q Consensus        90 k~Ce~C~GsGi--------CpeCkGEGFVl  111 (136)
                      ..|+.|.|+|.        |+.|+|.|+++
T Consensus       149 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~  178 (380)
T PRK14297        149 ENCETCNGTGAKPGTSPKTCDKCGGTGQIR  178 (380)
T ss_pred             ccCCCcccccccCCCcCccCCCccCeEEEE
Confidence            45777777663        66666666654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=94.58  E-value=0.017  Score=48.21  Aligned_cols=23  Identities=52%  Similarity=1.178  Sum_probs=14.9

Q ss_pred             cccccCCCcc--------CCCCccCcceeee
Q 032638           90 KTCEDCGGSG--------ICPECKGEGFVLK  112 (136)
Q Consensus        90 k~Ce~C~GsG--------iCpeCkGEGFVlK  112 (136)
                      ..|+.|.|+|        .|+.|+|.|.|..
T Consensus       143 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~  173 (371)
T PRK10767        143 VTCDTCHGSGAKPGTSPKTCPTCHGAGQVRM  173 (371)
T ss_pred             ccCCCCCCcccCCCCCCccCCCCCCeeEEEE
Confidence            4577777766        4677777766554

>PRK14282 chaperone protein DnaJ; Provisional

Probab=94.56  E-value=0.023  Score=47.62  Aligned_cols=9  Identities=67%  Similarity=1.726  Sum_probs=4.7

Q ss_pred             ccccCCCcc
Q 032638           91 TCEDCGGSG   99 (136)
Q Consensus        91 ~Ce~C~GsG   99 (136)
                      .|..|.|+|
T Consensus       154 ~C~~C~G~G  162 (369)
T PRK14282        154 TCPHCGGTG  162 (369)
T ss_pred             cCCCCCccC
Confidence            455555554

>PRK14295 chaperone protein DnaJ; Provisional

Probab=94.53  E-value=0.018  Score=48.94  Aligned_cols=11  Identities=55%  Similarity=1.633  Sum_probs=6.0

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|+|.|++.
T Consensus       208 C~~C~G~G~~~  218 (389)
T PRK14295        208 CPDCKGRGLIA  218 (389)
T ss_pred             cCCCcceeEEe
Confidence            55555555554

>PRK14287 chaperone protein DnaJ; Provisional

Probab=94.47  E-value=0.023  Score=47.88  Aligned_cols=23  Identities=43%  Similarity=1.012  Sum_probs=13.7

Q ss_pred             cccccCCCcc--------CCCCccCcceeee
Q 032638           90 KTCEDCGGSG--------ICPECKGEGFVLK  112 (136)
Q Consensus        90 k~Ce~C~GsG--------iCpeCkGEGFVlK  112 (136)
                      ..|+.|.|+|        .|+.|+|.|.+..
T Consensus       139 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~  169 (371)
T PRK14287        139 ETCGTCHGSGAKPGTKPETCSHCGGSGQLNV  169 (371)
T ss_pred             ccCCCCCCcccCCCCCCcccCCCCCEEEEEE
Confidence            4566776666        3666666665543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=94.47  E-value=0.019  Score=48.19  Aligned_cols=23  Identities=39%  Similarity=1.210  Sum_probs=15.0

Q ss_pred             ccccccCCCccC-------------CCCccCcceee
Q 032638           89 LKTCEDCGGSGI-------------CPECKGEGFVL  111 (136)
Q Consensus        89 ~k~Ce~C~GsGi-------------CpeCkGEGFVl  111 (136)
                      .+.|..|+|+|.             |+.|+|.|++.
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  197 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII  197 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe
Confidence            456777777763             66666666654

>PRK14278 chaperone protein DnaJ; Provisional

Probab=94.47  E-value=0.02  Score=48.32  Aligned_cols=11  Identities=55%  Similarity=1.416  Sum_probs=5.0

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|+|.|++.
T Consensus       185 C~~C~G~G~~~  195 (378)
T PRK14278        185 CPTCRGVGEVI  195 (378)
T ss_pred             CCCCCccceee
Confidence            44444444443

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=94.43  E-value=0.019  Score=47.34  Aligned_cols=11  Identities=55%  Similarity=1.476  Sum_probs=5.9

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|+|.|++.
T Consensus       189 C~~C~G~G~~~  199 (354)
T TIGR02349       189 CPTCGGEGKII  199 (354)
T ss_pred             cCCCCCcceec
Confidence            55555555544

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=94.43  E-value=0.023  Score=47.84  Aligned_cols=23  Identities=43%  Similarity=1.224  Sum_probs=12.9

Q ss_pred             ccccccCCCccC-------------CCCccCcceee
Q 032638           89 LKTCEDCGGSGI-------------CPECKGEGFVL  111 (136)
Q Consensus        89 ~k~Ce~C~GsGi-------------CpeCkGEGFVl  111 (136)
                      .+.|..|+|+|.             |+.|.|.|++.
T Consensus       156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  191 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII  191 (369)
T ss_pred             CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc
Confidence            345666666653             66666655554

>PRK14282 chaperone protein DnaJ; Provisional

Probab=94.43  E-value=0.022  Score=47.73  Aligned_cols=11  Identities=45%  Similarity=1.123  Sum_probs=7.0

Q ss_pred             ccccccCCCcc
Q 032638           89 LKTCEDCGGSG   99 (136)
Q Consensus        89 ~k~Ce~C~GsG   99 (136)
                      .+.|..|+|+|
T Consensus       169 ~~~C~~C~G~G  179 (369)
T PRK14282        169 YVTCPKCHGTG  179 (369)
T ss_pred             CcCCCCCCCcC
Confidence            45666666666

>PRK14276 chaperone protein DnaJ; Provisional

Probab=94.36  E-value=0.019  Score=48.35  Aligned_cols=8  Identities=63%  Similarity=1.630  Sum_probs=3.3

Q ss_pred             cccCCCcc
Q 032638           92 CEDCGGSG   99 (136)
Q Consensus        92 Ce~C~GsG   99 (136)
                      |+.|.|+|
T Consensus       149 C~~C~G~G  156 (380)
T PRK14276        149 CHTCNGSG  156 (380)
T ss_pred             CCCCcCcc
Confidence            44444433

>PRK14280 chaperone protein DnaJ; Provisional

Probab=94.31  E-value=0.027  Score=47.46  Aligned_cols=9  Identities=67%  Similarity=1.560  Sum_probs=4.5

Q ss_pred             ccccCCCcc
Q 032638           91 TCEDCGGSG   99 (136)
Q Consensus        91 ~Ce~C~GsG   99 (136)
                      .|++|.|+|
T Consensus       145 ~C~~C~G~G  153 (376)
T PRK14280        145 TCDTCHGSG  153 (376)
T ss_pred             cCCCCCCcc
Confidence            455555544

>PRK14286 chaperone protein DnaJ; Provisional

Probab=94.23  E-value=0.028  Score=47.38  Aligned_cols=12  Identities=50%  Similarity=1.434  Sum_probs=6.6

Q ss_pred             CCCccCcceeee
Q 032638          101 CPECKGEGFVLK  112 (136)
Q Consensus       101 CpeCkGEGFVlK  112 (136)
                      |+.|+|.|++.+
T Consensus       192 C~~C~G~G~~~~  203 (372)
T PRK14286        192 CPTCRGKGTVIS  203 (372)
T ss_pred             CCCCCceeeEec
Confidence            555555555543

>PRK14293 chaperone protein DnaJ; Provisional

Probab=94.21  E-value=0.026  Score=47.33  Aligned_cols=11  Identities=55%  Similarity=1.452  Sum_probs=5.4

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|+|.|++.
T Consensus       189 C~~C~G~G~~~  199 (374)
T PRK14293        189 CPTCNGTGQVI  199 (374)
T ss_pred             CCCCCcceeEe
Confidence            55555555443

>PRK14279 chaperone protein DnaJ; Provisional

Probab=94.20  E-value=0.027  Score=47.84  Aligned_cols=22  Identities=45%  Similarity=1.235  Sum_probs=11.1

Q ss_pred             cccccCCCccC--------CCCccCcceee
Q 032638           90 KTCEDCGGSGI--------CPECKGEGFVL  111 (136)
Q Consensus        90 k~Ce~C~GsGi--------CpeCkGEGFVl  111 (136)
                      ..|..|.|+|.        |+.|+|.|++.
T Consensus       174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~  203 (392)
T PRK14279        174 APCTTCHGSGARPGTSPKVCPTCNGSGVIS  203 (392)
T ss_pred             ccCCCCccccccCCCCCCCCCCCcceEEEE
Confidence            34555555553        44455544444

>PRK14280 chaperone protein DnaJ; Provisional

Probab=94.19  E-value=0.024  Score=47.74  Aligned_cols=11  Identities=64%  Similarity=1.428  Sum_probs=7.0

Q ss_pred             ccccccCCCcc
Q 032638           89 LKTCEDCGGSG   99 (136)
Q Consensus        89 ~k~Ce~C~GsG   99 (136)
                      .+.|..|+|+|
T Consensus       160 ~~~C~~C~G~G  170 (376)
T PRK14280        160 KETCSHCGGSG  170 (376)
T ss_pred             CccCCCCCCEE
Confidence            45566666665

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=0.028  Score=49.20  Aligned_cols=13  Identities=54%  Similarity=0.997  Sum_probs=6.7

Q ss_pred             CCCCccCcceeee
Q 032638          100 ICPECKGEGFVLK  112 (136)
Q Consensus       100 iCpeCkGEGFVlK  112 (136)
                      .|+.|+|.|.|-+
T Consensus       199 pC~~C~G~G~v~~  211 (371)
T COG0484         199 PCGKCKGKGRVKK  211 (371)
T ss_pred             CCCCCCCCCeEee
Confidence            3555555555443

>PRK14296 chaperone protein DnaJ; Provisional

Probab=94.06  E-value=0.033  Score=47.02  Aligned_cols=10  Identities=50%  Similarity=1.149  Sum_probs=5.1

Q ss_pred             cccccCCCcc
Q 032638           90 KTCEDCGGSG   99 (136)
Q Consensus        90 k~Ce~C~GsG   99 (136)
                      ..|..|.|+|
T Consensus       150 ~~C~~C~G~G  159 (372)
T PRK14296        150 TNCSKCFGSG  159 (372)
T ss_pred             eccCCCCCCc
Confidence            3455555554

>PRK14298 chaperone protein DnaJ; Provisional

Probab=94.05  E-value=0.033  Score=47.12  Aligned_cols=22  Identities=45%  Similarity=1.218  Sum_probs=11.3

Q ss_pred             cccccCCCccC--------CCCccCcceee
Q 032638           90 KTCEDCGGSGI--------CPECKGEGFVL  111 (136)
Q Consensus        90 k~Ce~C~GsGi--------CpeCkGEGFVl  111 (136)
                      ..|..|.|+|.        |+.|+|.|.|.
T Consensus       142 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~  171 (377)
T PRK14298        142 ERCSTCSGTGAKPGTSPKRCPTCGGTGQVT  171 (377)
T ss_pred             ccCCCCCCCcccCCCCCCcCCCCCCccEEE
Confidence            34555555552        55555555443

>PRK14296 chaperone protein DnaJ; Provisional

Probab=94.04  E-value=0.03  Score=47.28  Aligned_cols=10  Identities=40%  Similarity=1.311  Sum_probs=6.0

Q ss_pred             cccccCCCcc
Q 032638           90 KTCEDCGGSG   99 (136)
Q Consensus        90 k~Ce~C~GsG   99 (136)
                      ..|..|+|+|
T Consensus       167 ~~C~~C~G~G  176 (372)
T PRK14296        167 HICNNCHGTG  176 (372)
T ss_pred             ccCCCCCCCc
Confidence            4566666665

>PRK14289 chaperone protein DnaJ; Provisional

Probab=94.04  E-value=0.032  Score=46.93  Aligned_cols=25  Identities=44%  Similarity=1.091  Sum_probs=17.8

Q ss_pred             ccccccCCCccC--------CCCccCcceeeec
Q 032638           89 LKTCEDCGGSGI--------CPECKGEGFVLKK  113 (136)
Q Consensus        89 ~k~Ce~C~GsGi--------CpeCkGEGFVlK~  113 (136)
                      .+.|+.|.|+|.        |+.|+|.|.++..
T Consensus       154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~  186 (386)
T PRK14289        154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRV  186 (386)
T ss_pred             ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEE
Confidence            467888888883        7777777766543

>PRK14284 chaperone protein DnaJ; Provisional

Probab=94.02  E-value=0.031  Score=47.27  Aligned_cols=26  Identities=46%  Similarity=1.107  Sum_probs=21.7

Q ss_pred             ccccccCCCccC--------CCCccCcceeeecC
Q 032638           89 LKTCEDCGGSGI--------CPECKGEGFVLKKL  114 (136)
Q Consensus        89 ~k~Ce~C~GsGi--------CpeCkGEGFVlK~L  114 (136)
                      ...|+.|.|+|.        |+.|+|.|.|....
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~  191 (391)
T PRK14284        158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR  191 (391)
T ss_pred             eccCCCCcccccCCCCCCeecCccCCeeEEEEEe
Confidence            568999999885        99999999887543

>PRK14276 chaperone protein DnaJ; Provisional

Probab=93.98  E-value=0.033  Score=46.93  Aligned_cols=26  Identities=42%  Similarity=0.958  Sum_probs=21.4

Q ss_pred             cccccccCCCccC-----------------CCCccCcceeeec
Q 032638           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLKK  113 (136)
Q Consensus        88 ~~k~Ce~C~GsGi-----------------CpeCkGEGFVlK~  113 (136)
                      ..+.|..|+|+|.                 |+.|+|.|++.++
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~  204 (380)
T PRK14276        162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKE  204 (380)
T ss_pred             CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccC
Confidence            4578999999984                 8999999888754

>PRK14285 chaperone protein DnaJ; Provisional

Probab=93.97  E-value=0.033  Score=46.82  Aligned_cols=24  Identities=42%  Similarity=0.908  Sum_probs=19.4

Q ss_pred             ccccccCCCcc--------CCCCccCcceeee
Q 032638           89 LKTCEDCGGSG--------ICPECKGEGFVLK  112 (136)
Q Consensus        89 ~k~Ce~C~GsG--------iCpeCkGEGFVlK  112 (136)
                      ...|+.|.|+|        .|+.|+|.|.|+.
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~  177 (365)
T PRK14285        146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ  177 (365)
T ss_pred             cccCCCCCCcccCCCCCCccCCCccCceeEEe
Confidence            45799999988        4899999988764

>PRK14301 chaperone protein DnaJ; Provisional

Probab=93.95  E-value=0.034  Score=46.91  Aligned_cols=10  Identities=80%  Similarity=1.770  Sum_probs=5.5

Q ss_pred             cccccCCCcc
Q 032638           90 KTCEDCGGSG   99 (136)
Q Consensus        90 k~Ce~C~GsG   99 (136)
                      ..|+.|.|+|
T Consensus       145 ~~C~~C~G~G  154 (373)
T PRK14301        145 VTCDDCGGSG  154 (373)
T ss_pred             ccCCCCCCcc
Confidence            3455555555

>PRK14288 chaperone protein DnaJ; Provisional

Probab=93.93  E-value=0.038  Score=46.55  Aligned_cols=25  Identities=40%  Similarity=1.115  Sum_probs=20.7

Q ss_pred             ccccccCCCcc-------CCCCccCcceeeec
Q 032638           89 LKTCEDCGGSG-------ICPECKGEGFVLKK  113 (136)
Q Consensus        89 ~k~Ce~C~GsG-------iCpeCkGEGFVlK~  113 (136)
                      .+.|+.|.|+|       .|+.|+|.|.|...
T Consensus       140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~  171 (369)
T PRK14288        140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMR  171 (369)
T ss_pred             eccCCCCCCcccCCCCCcCCCCCCCCcEEEEE
Confidence            34899999988       59999999988643

>PRK14281 chaperone protein DnaJ; Provisional

Probab=93.91  E-value=0.03  Score=47.53  Aligned_cols=11  Identities=64%  Similarity=1.458  Sum_probs=5.3

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|+|.|++.
T Consensus       208 C~~C~G~G~~~  218 (397)
T PRK14281        208 CPTCGGEGRVV  218 (397)
T ss_pred             cCCCcceeeee
Confidence            55555555443

>PRK14277 chaperone protein DnaJ; Provisional

Probab=93.90  E-value=0.027  Score=47.53  Aligned_cols=11  Identities=45%  Similarity=1.292  Sum_probs=5.3

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|+|.|++.
T Consensus       201 C~~C~G~G~~~  211 (386)
T PRK14277        201 CDRCHGEGKII  211 (386)
T ss_pred             CCCCCcceeec
Confidence            45555555443

>PRK14290 chaperone protein DnaJ; Provisional

Probab=93.88  E-value=0.033  Score=46.64  Aligned_cols=10  Identities=50%  Similarity=1.205  Sum_probs=5.3

Q ss_pred             cccccCCCcc
Q 032638           90 KTCEDCGGSG   99 (136)
Q Consensus        90 k~Ce~C~GsG   99 (136)
                      ..|..|+|+|
T Consensus       166 ~~C~~C~G~G  175 (365)
T PRK14290        166 ITCPTCHGTG  175 (365)
T ss_pred             ccCCCCCCcC
Confidence            4455555555

>PRK14279 chaperone protein DnaJ; Provisional

Probab=93.85  E-value=0.03  Score=47.57  Aligned_cols=25  Identities=40%  Similarity=1.180  Sum_probs=17.9

Q ss_pred             cccccccCCCccC-------------CCCccCcceeee
Q 032638           88 PLKTCEDCGGSGI-------------CPECKGEGFVLK  112 (136)
Q Consensus        88 ~~k~Ce~C~GsGi-------------CpeCkGEGFVlK  112 (136)
                      ..+.|..|.|+|.             |+.|+|.|++.+
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~  226 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE  226 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC
Confidence            3467888888873             777777777654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=93.72  E-value=0.04  Score=46.14  Aligned_cols=9  Identities=78%  Similarity=1.693  Sum_probs=4.8

Q ss_pred             ccccCCCcc
Q 032638           91 TCEDCGGSG   99 (136)
Q Consensus        91 ~Ce~C~GsG   99 (136)
                      .|..|.|+|
T Consensus       146 ~C~~C~G~G  154 (366)
T PRK14294        146 TCEECHGSG  154 (366)
T ss_pred             cCCCCCCcc
Confidence            455555555

>PRK14286 chaperone protein DnaJ; Provisional

Probab=93.66  E-value=0.034  Score=46.88  Aligned_cols=24  Identities=46%  Similarity=1.254  Sum_probs=14.5

Q ss_pred             cccccCCCcc--------CCCCccCcceeeec
Q 032638           90 KTCEDCGGSG--------ICPECKGEGFVLKK  113 (136)
Q Consensus        90 k~Ce~C~GsG--------iCpeCkGEGFVlK~  113 (136)
                      ..|+.|.|+|        .|+.|+|.|.|+..
T Consensus       151 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~  182 (372)
T PRK14286        151 ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT  182 (372)
T ss_pred             ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEE
Confidence            4566666665        36666666665543

>PRK14278 chaperone protein DnaJ; Provisional

Probab=93.65  E-value=0.041  Score=46.45  Aligned_cols=25  Identities=36%  Similarity=0.846  Sum_probs=21.4

Q ss_pred             ccccccCCCcc--------CCCCccCcceeeec
Q 032638           89 LKTCEDCGGSG--------ICPECKGEGFVLKK  113 (136)
Q Consensus        89 ~k~Ce~C~GsG--------iCpeCkGEGFVlK~  113 (136)
                      ...|+.|.|+|        .|+.|+|.|.+...
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~  171 (378)
T PRK14278        139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTV  171 (378)
T ss_pred             eccCCCCcCccCCCCCCceecCCccCceEEEEE
Confidence            46799999998        59999999988754

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=93.59  E-value=0.038  Score=47.92  Aligned_cols=24  Identities=33%  Similarity=1.023  Sum_probs=16.0

Q ss_pred             ccccccCCCcc-----------------CCCCccCcceeee
Q 032638           89 LKTCEDCGGSG-----------------ICPECKGEGFVLK  112 (136)
Q Consensus        89 ~k~Ce~C~GsG-----------------iCpeCkGEGFVlK  112 (136)
                      ...|..|+|+|                 .|+.|+|.|++++
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~  206 (421)
T PTZ00037        166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP  206 (421)
T ss_pred             CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence            45677777777                 3777777776664

>PRK14293 chaperone protein DnaJ; Provisional

Probab=93.58  E-value=0.044  Score=45.99  Aligned_cols=26  Identities=50%  Similarity=1.062  Sum_probs=22.2

Q ss_pred             ccccccCCCccC--------CCCccCcceeeecC
Q 032638           89 LKTCEDCGGSGI--------CPECKGEGFVLKKL  114 (136)
Q Consensus        89 ~k~Ce~C~GsGi--------CpeCkGEGFVlK~L  114 (136)
                      ...|+.|.|+|.        |+.|+|.|.+.+..
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~  176 (374)
T PRK14293        143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRAT  176 (374)
T ss_pred             cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEE
Confidence            468999999885        99999999987654

>PRK14291 chaperone protein DnaJ; Provisional

Probab=93.56  E-value=0.045  Score=46.17  Aligned_cols=23  Identities=48%  Similarity=1.285  Sum_probs=13.2

Q ss_pred             cccccCCCccC--------CCCccCcceeee
Q 032638           90 KTCEDCGGSGI--------CPECKGEGFVLK  112 (136)
Q Consensus        90 k~Ce~C~GsGi--------CpeCkGEGFVlK  112 (136)
                      ..|..|.|+|.        |+.|+|.|.++.
T Consensus       157 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~  187 (382)
T PRK14291        157 VPCEACGGTGYDPGSGEKVCPTCGGSGEIYQ  187 (382)
T ss_pred             ccCCCCccccCCCCCCCccCCCCCCceEEEE
Confidence            45666666662        555555555543

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=93.54  E-value=0.049  Score=44.99  Aligned_cols=26  Identities=42%  Similarity=1.071  Sum_probs=22.3

Q ss_pred             ccccccCCCcc--------CCCCccCcceeeecC
Q 032638           89 LKTCEDCGGSG--------ICPECKGEGFVLKKL  114 (136)
Q Consensus        89 ~k~Ce~C~GsG--------iCpeCkGEGFVlK~L  114 (136)
                      ...|..|.|+|        .|+.|+|.|+|+...
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~  176 (354)
T TIGR02349       143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQ  176 (354)
T ss_pred             CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEE
Confidence            46799999998        499999999988654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14298 chaperone protein DnaJ; Provisional

Probab=93.52  E-value=0.045  Score=46.32  Aligned_cols=12  Identities=58%  Similarity=1.193  Sum_probs=6.3

Q ss_pred             CCCccCcceeee
Q 032638          101 CPECKGEGFVLK  112 (136)
Q Consensus       101 CpeCkGEGFVlK  112 (136)
                      |+.|+|.|.|.+
T Consensus       201 C~~C~G~g~v~~  212 (377)
T PRK14298        201 CPVCSGTGKVRK  212 (377)
T ss_pred             CCCCCCccEEEE
Confidence            555555555543

>PRK14277 chaperone protein DnaJ; Provisional

Probab=93.52  E-value=0.047  Score=46.16  Aligned_cols=25  Identities=44%  Similarity=1.111  Sum_probs=21.3

Q ss_pred             ccccccCCCccC--------CCCccCcceeeec
Q 032638           89 LKTCEDCGGSGI--------CPECKGEGFVLKK  113 (136)
Q Consensus        89 ~k~Ce~C~GsGi--------CpeCkGEGFVlK~  113 (136)
                      ...|..|.|+|.        |+.|+|.|.+...
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~  187 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTR  187 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEE
Confidence            467999999885        9999999988754

>PRK14297 chaperone protein DnaJ; Provisional

Probab=93.39  E-value=0.04  Score=46.37  Aligned_cols=24  Identities=50%  Similarity=1.251  Sum_probs=15.3

Q ss_pred             ccccccCCCcc-----------------CCCCccCcceeee
Q 032638           89 LKTCEDCGGSG-----------------ICPECKGEGFVLK  112 (136)
Q Consensus        89 ~k~Ce~C~GsG-----------------iCpeCkGEGFVlK  112 (136)
                      ...|..|.|+|                 .|+.|+|.|++.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  205 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE  205 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC
Confidence            45677777776                 3666666666544

>PRK14289 chaperone protein DnaJ; Provisional

Probab=93.32  E-value=0.052  Score=45.69  Aligned_cols=24  Identities=46%  Similarity=1.079  Sum_probs=14.4

Q ss_pred             ccccccCCCcc-----CCCCccCcceeee
Q 032638           89 LKTCEDCGGSG-----ICPECKGEGFVLK  112 (136)
Q Consensus        89 ~k~Ce~C~GsG-----iCpeCkGEGFVlK  112 (136)
                      ...|..|+|.|     .|+.|+|.|+|.+
T Consensus       197 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  225 (386)
T PRK14289        197 QSTCPTCNGEGKIIKKKCKKCGGEGIVYG  225 (386)
T ss_pred             EEecCCCCccccccCcCCCCCCCCcEEee
Confidence            34566666666     4666666666654

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=93.30  E-value=0.043  Score=51.83  Aligned_cols=27  Identities=44%  Similarity=1.232  Sum_probs=24.8

Q ss_pred             ccccccCCCcc-------CCCCccCcceeeecCCH
Q 032638           89 LKTCEDCGGSG-------ICPECKGEGFVLKKLSE  116 (136)
Q Consensus        89 ~k~Ce~C~GsG-------iCpeCkGEGFVlK~Lse  116 (136)
                      .++|++|+|.|       .||-|.|-||+ +++++
T Consensus         2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~-~~~d~   35 (715)
T COG1107           2 IKKCPECGGKGKIVVGEEECPVCHGTGFS-DDFDP   35 (715)
T ss_pred             CccccccCCCceEeeeeeecccccccccc-cccCh
Confidence            57899999999       49999999999 99987

>PRK14287 chaperone protein DnaJ; Provisional

Probab=93.29  E-value=0.038  Score=46.54  Aligned_cols=24  Identities=50%  Similarity=1.283  Sum_probs=16.2

Q ss_pred             ccccccCCCcc-----------------CCCCccCcceeee
Q 032638           89 LKTCEDCGGSG-----------------ICPECKGEGFVLK  112 (136)
Q Consensus        89 ~k~Ce~C~GsG-----------------iCpeCkGEGFVlK  112 (136)
                      .+.|..|.|+|                 .|+.|.|.|++.+
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~  195 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK  195 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc
Confidence            45677777776                 3777777776643

>PRK14283 chaperone protein DnaJ; Provisional

Probab=93.29  E-value=0.053  Score=45.62  Aligned_cols=22  Identities=50%  Similarity=1.082  Sum_probs=12.6

Q ss_pred             cccccCCCccC--------CCCccCcceee
Q 032638           90 KTCEDCGGSGI--------CPECKGEGFVL  111 (136)
Q Consensus        90 k~Ce~C~GsGi--------CpeCkGEGFVl  111 (136)
                      ..|+.|.|+|.        |+.|+|.|.++
T Consensus       147 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~  176 (378)
T PRK14283        147 KKCPVCNGSRAEPGSEVKTCPTCGGTGQVK  176 (378)
T ss_pred             ccCCCCCccccCCCCCCccCCCcCCccEEE
Confidence            45666666553        55555555554

>PRK14295 chaperone protein DnaJ; Provisional

Probab=93.14  E-value=0.055  Score=45.98  Aligned_cols=26  Identities=38%  Similarity=1.054  Sum_probs=21.2

Q ss_pred             ccccccCCCcc--------CCCCccCcceeeecC
Q 032638           89 LKTCEDCGGSG--------ICPECKGEGFVLKKL  114 (136)
Q Consensus        89 ~k~Ce~C~GsG--------iCpeCkGEGFVlK~L  114 (136)
                      ...|+.|.|+|        .|+.|+|.|.|+...
T Consensus       166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~  199 (389)
T PRK14295        166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS  199 (389)
T ss_pred             cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe
Confidence            45799999987        499999999888754

>PRK14290 chaperone protein DnaJ; Provisional

Probab=92.98  E-value=0.063  Score=44.95  Aligned_cols=25  Identities=48%  Similarity=1.229  Sum_probs=22.2

Q ss_pred             ccccccCCCcc-----CCCCccCcceeeec
Q 032638           89 LKTCEDCGGSG-----ICPECKGEGFVLKK  113 (136)
Q Consensus        89 ~k~Ce~C~GsG-----iCpeCkGEGFVlK~  113 (136)
                      ...|..|+|.|     .|+.|+|.|+|.+.
T Consensus       191 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~  220 (365)
T PRK14290        191 VTTCRTCGGRGRIPEEKCPRCNGTGTVVVN  220 (365)
T ss_pred             EEeCCCCCCceeEccCCCCCCCCceeEEEe
Confidence            46899999999     89999999998764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=92.93  E-value=0.064  Score=45.26  Aligned_cols=11  Identities=64%  Similarity=1.359  Sum_probs=6.7

Q ss_pred             ccccccCCCcc
Q 032638           89 LKTCEDCGGSG   99 (136)
Q Consensus        89 ~k~Ce~C~GsG   99 (136)
                      ...|..|.|+|
T Consensus       173 ~~~C~~C~G~G  183 (382)
T PRK14291        173 EKVCPTCGGSG  183 (382)
T ss_pred             CccCCCCCCce
Confidence            44566666665

>PRK14294 chaperone protein DnaJ; Provisional

Probab=92.91  E-value=0.064  Score=44.95  Aligned_cols=11  Identities=64%  Similarity=1.383  Sum_probs=6.4

Q ss_pred             ccccccCCCcc
Q 032638           89 LKTCEDCGGSG   99 (136)
Q Consensus        89 ~k~Ce~C~GsG   99 (136)
                      ...|..|.|+|
T Consensus       161 ~~~C~~C~G~G  171 (366)
T PRK14294        161 PTTCPQCGGSG  171 (366)
T ss_pred             cccCCCcCCeE
Confidence            34566666665

>PRK14301 chaperone protein DnaJ; Provisional

Probab=92.68  E-value=0.064  Score=45.24  Aligned_cols=23  Identities=61%  Similarity=1.421  Sum_probs=13.8

Q ss_pred             cccccCCCcc-------------CCCCccCcceeee
Q 032638           90 KTCEDCGGSG-------------ICPECKGEGFVLK  112 (136)
Q Consensus        90 k~Ce~C~GsG-------------iCpeCkGEGFVlK  112 (136)
                      ..|..|.|+|             .|+.|+|.|++.+
T Consensus       162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~  197 (373)
T PRK14301        162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT  197 (373)
T ss_pred             cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC
Confidence            4677777766             3666666665543

>PRK14281 chaperone protein DnaJ; Provisional

Probab=92.59  E-value=0.062  Score=45.68  Aligned_cols=25  Identities=44%  Similarity=1.155  Sum_probs=21.5

Q ss_pred             ccccccCCCccC-----CCCccCcceeeec
Q 032638           89 LKTCEDCGGSGI-----CPECKGEGFVLKK  113 (136)
Q Consensus        89 ~k~Ce~C~GsGi-----CpeCkGEGFVlK~  113 (136)
                      ...|..|+|+|.     |+.|+|.|+|.++
T Consensus       205 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~  234 (397)
T PRK14281        205 ITACPTCGGEGRVVKDRCPACYGEGIKQGE  234 (397)
T ss_pred             EEecCCCcceeeeeCCCCCCCCCCccEecc
Confidence            448999999995     9999999998753

>PRK14292 chaperone protein DnaJ; Provisional

Probab=92.17  E-value=0.087  Score=44.03  Aligned_cols=13  Identities=46%  Similarity=0.997  Sum_probs=7.1

Q ss_pred             CCCCccCcceeee
Q 032638          100 ICPECKGEGFVLK  112 (136)
Q Consensus       100 iCpeCkGEGFVlK  112 (136)
                      .|+.|+|.|.|.+
T Consensus       199 ~C~~C~G~g~v~~  211 (371)
T PRK14292        199 PCTVCRGRGRTLK  211 (371)
T ss_pred             CCCCCCCceEEee
Confidence            4555555555543

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.90  E-value=0.1  Score=45.72  Aligned_cols=24  Identities=50%  Similarity=1.092  Sum_probs=14.6

Q ss_pred             ccccccCCCcc--------CCCCccCcceeee
Q 032638           89 LKTCEDCGGSG--------ICPECKGEGFVLK  112 (136)
Q Consensus        89 ~k~Ce~C~GsG--------iCpeCkGEGFVlK  112 (136)
                      ...|+.|.|||        .|+.|+|.|+|..
T Consensus       142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~  173 (371)
T COG0484         142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRT  173 (371)
T ss_pred             eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEE
Confidence            35566666664        5666666666543

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=91.61  E-value=0.1  Score=45.32  Aligned_cols=26  Identities=35%  Similarity=0.949  Sum_probs=22.3

Q ss_pred             cccccccCCCcc-------CCCCccCcceeeec
Q 032638           88 PLKTCEDCGGSG-------ICPECKGEGFVLKK  113 (136)
Q Consensus        88 ~~k~Ce~C~GsG-------iCpeCkGEGFVlK~  113 (136)
                      ....|..|+|+|       .|+.|+|.|.|.+.
T Consensus       191 ~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~  223 (421)
T PTZ00037        191 TQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTR  223 (421)
T ss_pred             EEEeCCCCCCcceeccccccCCcCCCcceeeee
Confidence            456899999999       39999999999754

>PRK14292 chaperone protein DnaJ; Provisional

Probab=91.25  E-value=0.15  Score=42.55  Aligned_cols=13  Identities=46%  Similarity=1.380  Sum_probs=8.2

Q ss_pred             CCCccCcceeeec
Q 032638          101 CPECKGEGFVLKK  113 (136)
Q Consensus       101 CpeCkGEGFVlK~  113 (136)
                      |+.|+|.|+..++
T Consensus       186 C~~C~G~G~~~~~  198 (371)
T PRK14292        186 CPTCRGEGQIITD  198 (371)
T ss_pred             cCCCcccceecCC
Confidence            6666666666543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=89.48  E-value=0.21  Score=42.12  Aligned_cols=11  Identities=64%  Similarity=1.440  Sum_probs=5.7

Q ss_pred             cccccCCCccC
Q 032638           90 KTCEDCGGSGI  100 (136)
Q Consensus        90 k~Ce~C~GsGi  100 (136)
                      ..|..|.|+|.
T Consensus       164 ~~C~~C~G~G~  174 (378)
T PRK14283        164 KTCPTCGGTGQ  174 (378)
T ss_pred             ccCCCcCCccE
Confidence            44555555544

>PF14369 zf-RING_3: zinc-finger

Probab=85.39  E-value=0.43  Score=29.00  Aligned_cols=10  Identities=70%  Similarity=1.810  Sum_probs=8.0

Q ss_pred             CCCCccCccee
Q 032638          100 ICPECKGEGFV  110 (136)
Q Consensus       100 iCpeCkGEGFV  110 (136)
                      .||+|.| |||
T Consensus        23 ~CP~C~~-gFv   32 (35)
T PF14369_consen   23 ACPRCHG-GFV   32 (35)
T ss_pred             CCcCCCC-cEe
Confidence            4888885 887

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=83.24  E-value=0.59  Score=44.72  Aligned_cols=21  Identities=43%  Similarity=1.053  Sum_probs=17.9

Q ss_pred             ccccccCCCcc--------------CCCCccCcce
Q 032638           89 LKTCEDCGGSG--------------ICPECKGEGF  109 (136)
Q Consensus        89 ~k~Ce~C~GsG--------------iCpeCkGEGF  109 (136)
                      .--|+.|.|.|              .||.|.|..|
T Consensus       736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~  770 (924)
T TIGR00630       736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY  770 (924)
T ss_pred             CCCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence            45699999988              6999999887

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=81.20  E-value=0.84  Score=26.43  Aligned_cols=20  Identities=45%  Similarity=1.364  Sum_probs=12.8

Q ss_pred             cccccCCC-----ccCCCCccCcceeee
Q 032638           90 KTCEDCGG-----SGICPECKGEGFVLK  112 (136)
Q Consensus        90 k~Ce~C~G-----sGiCpeCkGEGFVlK  112 (136)
                      |.|++|+.     .-+||.|   ||.|+
T Consensus         1 K~CP~C~~~V~~~~~~Cp~C---G~~F~   25 (26)
T PF10571_consen    1 KTCPECGAEVPESAKFCPHC---GYDFE   25 (26)
T ss_pred             CcCCCCcCCchhhcCcCCCC---CCCCc
Confidence            46777764     4567777   55554

Several members are annotated as putative helicases.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=80.46  E-value=0.81  Score=39.84  Aligned_cols=27  Identities=37%  Similarity=0.898  Sum_probs=22.3

Q ss_pred             cccccccccccCCCcc-------CCCCccCccee
Q 032638           84 ETEIPLKTCEDCGGSG-------ICPECKGEGFV  110 (136)
Q Consensus        84 ~~E~~~k~Ce~C~GsG-------iCpeCkGEGFV  110 (136)
                      ..+..+-.|.+|+|+|       .|+.|+|.+++
T Consensus       165 ~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  165 MVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVV  198 (337)
T ss_pred             ccccceeEeccCCCccccccccccCcccccchhh
Confidence            3467788899999988       59999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-06
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	5e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 8/32 (25%)

Query: 41 QEQE-RKLPTVSSAL----PETAASVAIAATV 67
          ++Q  +KL    ++L     ++A ++AI AT+
Sbjct: 18 EKQALKKL---QASLKLYADDSAPALAIKATM 46

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 18/62 (29%)

Query: 76  VRRTKGSEETEIPLK-TCEDCGG----------SG--ICPECKGEGFVLK-KLSEETAE- 120
           + +  G     + +  TC +C             G  +C  C   G VL  KL +  +E 
Sbjct: 7   IDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALC---GLVLSDKLVDTRSEW 63

Query: 121 RA 122
           R 
Sbjct: 64  RT 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.07
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.03
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	96.54
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	96.37
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	96.15
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	95.74
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	94.85
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	94.31
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	85.08
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	83.73
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	83.44

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.07  E-value=0.00019  Score=45.98  Aligned_cols=27  Identities=44%  Similarity=1.048  Sum_probs=23.5

Q ss_pred             cccccccCCCccC-----CCCccCcceeeecC
Q 032638           88 PLKTCEDCGGSGI-----CPECKGEGFVLKKL  114 (136)
Q Consensus        88 ~~k~Ce~C~GsGi-----CpeCkGEGFVlK~L  114 (136)
                      -...|++|+|+|-     |+.|+|.|.|.++-
T Consensus         8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~~   39 (53)
T 3lcz_A            8 LETTCPNCNGSGREEPEPCPKCLGKGVILTAQ   39 (53)
T ss_dssp             HEEECTTTTTSCEETTEECTTTTTSSEEECHH
T ss_pred             eeccCcCCcccccCCCCcCCCCCCcEEEEEEe
Confidence            3568999999997     99999999998764

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.03  E-value=0.00023  Score=45.66  Aligned_cols=26  Identities=35%  Similarity=0.924  Sum_probs=22.7

Q ss_pred             cccccccCCCcc-----CCCCccCcceeeec
Q 032638           88 PLKTCEDCGGSG-----ICPECKGEGFVLKK  113 (136)
Q Consensus        88 ~~k~Ce~C~GsG-----iCpeCkGEGFVlK~  113 (136)
                      -...|+.|+|+|     .||.|+|.|.|.++
T Consensus         8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~   38 (53)
T 2bx9_A            8 LEVACPKCERAGEIEGTPCPACSGKGVILTA   38 (53)
T ss_dssp             HEEECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred             ccccCCCCcceeccCCCCCccCCCCccEEEE
Confidence            356899999999     69999999999873

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=96.54  E-value=0.00087  Score=42.94  Aligned_cols=12  Identities=42%  Similarity=1.328  Sum_probs=6.6

Q ss_pred             CCCCccCcceee
Q 032638          100 ICPECKGEGFVL  111 (136)
Q Consensus       100 iCpeCkGEGFVl  111 (136)
                      .||.|+|.|.+.
T Consensus        52 ~C~~C~G~G~~~   63 (79)
T 1exk_A           52 TCPHCQGRGTLI   63 (79)
T ss_dssp             ECTTTTTSSEEC
T ss_pred             ECcCCCCccEEC
Confidence            455555555554

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=96.37  E-value=0.0013  Score=42.06  Aligned_cols=25  Identities=48%  Similarity=1.115  Sum_probs=19.7

Q ss_pred             cccccccCCCcc--------CCCCccCcceeee
Q 032638           88 PLKTCEDCGGSG--------ICPECKGEGFVLK  112 (136)
Q Consensus        88 ~~k~Ce~C~GsG--------iCpeCkGEGFVlK  112 (136)
                      ..+.|+.|.|+|        .||.|+|.|.++.
T Consensus        10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~   42 (79)
T 1exk_A           10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM   42 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE
T ss_pred             cceECCCCcccccCCCccCCCCCCCcCeEEEEE
Confidence            346788888888        5888998888764

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.15  E-value=0.0021  Score=43.62  Aligned_cols=10  Identities=40%  Similarity=1.089  Sum_probs=4.5

Q ss_pred             CCCccCccee
Q 032638          101 CPECKGEGFV  110 (136)
Q Consensus       101 CpeCkGEGFV  110 (136)
                      |+.|+|.|++
T Consensus        84 C~~C~G~G~v   93 (104)
T 2ctt_A           84 CVVCRGAGQA   93 (104)
T ss_dssp             CSSSSSCSEE
T ss_pred             CCCCCCeeEE
Confidence            4444444444

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.74  E-value=0.0046  Score=41.95  Aligned_cols=21  Identities=48%  Similarity=1.142  Sum_probs=10.4

Q ss_pred             cccccCCCcc--------CCCCccCccee
Q 032638           90 KTCEDCGGSG--------ICPECKGEGFV  110 (136)
Q Consensus        90 k~Ce~C~GsG--------iCpeCkGEGFV  110 (136)
                      +.|+.|.|+|        .||.|+|.|.+
T Consensus        29 ~~C~~C~G~G~~~g~~~~~C~~C~G~G~~   57 (104)
T 2ctt_A           29 DTCERCNGKGNEPGTKVQHCHYCGGSGME   57 (104)
T ss_dssp             EECSSSSSSSSCTTCCCEECSSSSSSCEE
T ss_pred             eECCCCcCCccCCCCCCccCCCCCCCEEE
Confidence            4455555554        25555555544

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=94.85  E-value=0.012  Score=45.78  Aligned_cols=11  Identities=36%  Similarity=1.075  Sum_probs=6.9

Q ss_pred             CCCccCcceee
Q 032638          101 CPECKGEGFVL  111 (136)
Q Consensus       101 CpeCkGEGFVl  111 (136)
                      |+.|+|.|.+.
T Consensus        83 C~~C~G~G~~i   93 (248)
T 1nlt_A           83 CDVCHGTGDII   93 (248)
T ss_dssp             CTTCSSSSSCC
T ss_pred             CCCCCCcCEEe
Confidence            66666666655

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=94.31  E-value=0.02  Score=44.45  Aligned_cols=25  Identities=28%  Similarity=0.731  Sum_probs=21.5

Q ss_pred             cccccccCCCcc-------CCCCccCcceeee
Q 032638           88 PLKTCEDCGGSG-------ICPECKGEGFVLK  112 (136)
Q Consensus        88 ~~k~Ce~C~GsG-------iCpeCkGEGFVlK  112 (136)
                      ....|+.|+|+|       -|+.|+|.|++-+
T Consensus        79 ~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~  110 (248)
T 1nlt_A           79 FQTECDVCHGTGDIIDPKDRCKSCNGKKVENE  110 (248)
T ss_dssp             EECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             EEEcCCCCCCcCEEeccCCCCcccCCCceEee
Confidence            456899999988       5999999999864

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=85.08  E-value=0.36  Score=45.18  Aligned_cols=24  Identities=46%  Similarity=0.998  Sum_probs=21.0

Q ss_pred             cccccccCCCc---------------cCCCCccCcceee
Q 032638           88 PLKTCEDCGGS---------------GICPECKGEGFVL  111 (136)
Q Consensus        88 ~~k~Ce~C~Gs---------------GiCpeCkGEGFVl  111 (136)
                      +.-.|++||-+               |-||.|.|-|+++
T Consensus       266 ~~~~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~  304 (972)
T 2r6f_A          266 EKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKL  304 (972)
T ss_dssp             SSEECTTTCCEEECCCGGGGCSSSTTTBCTTTTSCCEEE
T ss_pred             ccccCCCCCCcCCCCChhhcCcCCCCCCCCCCcCccceE
Confidence            34579999986               9999999999987

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=83.44  E-value=0.49  Score=43.46  Aligned_cols=24  Identities=42%  Similarity=1.016  Sum_probs=20.1

Q ss_pred             cccccccCCCc---------------cCCCCccCcceee
Q 032638           88 PLKTCEDCGGS---------------GICPECKGEGFVL  111 (136)
Q Consensus        88 ~~k~Ce~C~Gs---------------GiCpeCkGEGFVl  111 (136)
                      +.-.|++||-+               |-||+|.|-|.++
T Consensus       248 ~~~~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~G~G~~~  286 (916)
T 3pih_A          248 ENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTF  286 (916)
T ss_dssp             SSCBCTTTCCCCCCCSGGGGCTTSTTTBCTTTTTSSEEE
T ss_pred             ccccCcccCCccCCCCHhhcCCCCCCCcCCeeecccceE
Confidence            34579999854               9999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.6
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.53
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	95.79
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	95.72
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	87.18

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00044  Score=44.15  Aligned_cols=13  Identities=46%  Similarity=1.308  Sum_probs=6.4

Q ss_pred             CCCCccCcceeee
Q 032638          100 ICPECKGEGFVLK  112 (136)
Q Consensus       100 iCpeCkGEGFVlK  112 (136)
                      .||.|+|.|++++
T Consensus        52 ~C~~C~G~G~~i~   64 (79)
T d1exka_          52 TCPHCQGRGTLIK   64 (79)
T ss_dssp             ECTTTTTSSEECS
T ss_pred             ECcccCcceeECC
Confidence            3555555555443

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.00043  Score=44.21  Aligned_cols=24  Identities=42%  Similarity=1.027  Sum_probs=20.8

Q ss_pred             cccccCCCcc-----CCCCccCcceeeec
Q 032638           90 KTCEDCGGSG-----ICPECKGEGFVLKK  113 (136)
Q Consensus        90 k~Ce~C~GsG-----iCpeCkGEGFVlK~  113 (136)
                      ..|+.|+|+|     .|+.|+|.|.|.|.
T Consensus        51 ~~C~~C~G~G~~i~~~C~~C~G~G~v~kt   79 (79)
T d1exka_          51 QTCPHCQGRGTLIKDPCNKCHGHGRVERS   79 (79)
T ss_dssp             EECTTTTTSSEECSSBCGGGTTSSEEECC
T ss_pred             EECcccCcceeECCCCCCCCCCceEeecC
Confidence            4699999999     79999999998763

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0021  Score=40.64  Aligned_cols=25  Identities=40%  Similarity=1.100  Sum_probs=19.4

Q ss_pred             cccccccCCCccC-----------------CCCccCcceeee
Q 032638           88 PLKTCEDCGGSGI-----------------CPECKGEGFVLK  112 (136)
Q Consensus        88 ~~k~Ce~C~GsGi-----------------CpeCkGEGFVlK  112 (136)
                      ..+.|+.|.|+|.                 ||.|+|.|+++.
T Consensus        17 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~   58 (74)
T d1nlta3          17 AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID   58 (74)
T ss_dssp             TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC
T ss_pred             CCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC
Confidence            3467888888883                 888888888764

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0021  Score=40.59  Aligned_cols=23  Identities=30%  Similarity=0.820  Sum_probs=19.8

Q ss_pred             cccccccCCCcc-------CCCCccCccee
Q 032638           88 PLKTCEDCGGSG-------ICPECKGEGFV  110 (136)
Q Consensus        88 ~~k~Ce~C~GsG-------iCpeCkGEGFV  110 (136)
                      ....|+.|+|+|       .|+.|+|.|+|
T Consensus        43 ~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v   72 (74)
T d1nlta3          43 FQTECDVCHGTGDIIDPKDRCKSCNGKKVE   72 (74)
T ss_dssp             EECSCTTCSSSSSCCCTTSBCSSSTTSCEE
T ss_pred             EEEECccCccceEEeCCCCCCCCCCCeeEe
Confidence            346899999999       39999999975

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=87.18  E-value=0.089  Score=40.75  Aligned_cols=13  Identities=38%  Similarity=1.298  Sum_probs=10.3

Q ss_pred             CccCCCCccCccee
Q 032638           97 GSGICPECKGEGFV  110 (136)
Q Consensus        97 GsGiCpeCkGEGFV  110 (136)
                      |.| ||+|+|.||.
T Consensus       328 ~~G-C~~C~~~Gy~  340 (401)
T d1p9ra_         328 ATG-CPKCNHKGYR  340 (401)
T ss_dssp             CCC-CSSSCSSSEE
T ss_pred             CCC-ccccCCCCCC
Confidence            444 9999999974