Citrus Sinensis ID: 032653

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHVIVSLIFLF
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHcc
Coil and Loop (DISEMBL)
magtdndkplTKISESFKELAATVNSQAADVELAAFSRACsyvsplfgclGIAFKFAEMDYVAKVDDLAEASKSILTLQSVidrdiegncvrkagshtrnLLRVKRGLDMVRVLFEQILAAEYVYQHVIVSLIFLF
Flexible Loop (DISEMBL)
magtdndkpltKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILtlqsvidrdiegncvrkagshtrnllrvkrGLDMVRVLFEQILAAEYVYQHVIVSLIFLF
Low Complexity Region (SEG)
MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHVIVSLIFLF
Disordered region (IsUnstruct)
**********************TVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHVIVSLIFL*
Disordered Region (DISOPRED)
***********KISESFKE***********VELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDI**********HTRNLLRVKRGLDMVRVLFEQILAAEYVYQHVIVSLIFLF
Disordered Region (DISEMBL)
MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHVIVSLIFLF
Disordered Region (DISPRO)
*******KPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHVIVSLIFLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHVIVSLIFLF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
312283539	206	unnamed protein product [Thellungiella h	0.897	0.592	0.754	2e-47
224090181	205	predicted protein [Populus trichocarpa]	0.897	0.595	0.745	5e-47
449443730	204	PREDICTED: glycolipid transfer protein d	0.882	0.588	0.741	3e-46
297823255	206	hypothetical protein ARALYDRAFT_482433 [	0.897	0.592	0.745	4e-46
255584612	212	conserved hypothetical protein [Ricinus	0.897	0.575	0.713	2e-45
225444015	205	PREDICTED: glycolipid transfer protein d	0.897	0.595	0.721	3e-45
224096286	205	predicted protein [Populus trichocarpa]	0.897	0.595	0.729	1e-44
15226804	206	glycolipid transfer protein-like protein	0.897	0.592	0.721	5e-44
351724037	206	uncharacterized protein LOC100499750 [Gl	0.897	0.592	0.682	3e-41
414873212	258	TPA: putative glycolipid transfer protei	0.897	0.472	0.691	2e-40

>gi|312283539|dbj|BAJ34635.1| unnamed protein product [Thellungiella halophila]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 106/122 (86%)

Query: 1   MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60
           MA +D ++PL KIS +FKELAATVNS + +V +A FS ACS VSPLFGCLGIAFKFAEMD
Sbjct: 1   MADSDAERPLRKISTAFKELAATVNSPSPEVPVAQFSHACSLVSPLFGCLGIAFKFAEMD 60

Query: 61  YVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILA 120
           YVAKV+DLA AS S+ TL  ++D+DIE NCVRKAGSHTRNLLRVKRGLDMVRVLFEQI+A
Sbjct: 61  YVAKVNDLARASSSVSTLLVMVDKDIEANCVRKAGSHTRNLLRVKRGLDMVRVLFEQIIA 120

Query: 121 AE 122
           +E
Sbjct: 121 SE 122

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090181|ref|XP_002308949.1| predicted protein [Populus trichocarpa] gi|222854925|gb|EEE92472.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 103/122 (84%)

Query: 1   MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60
           M   + +KPL KI+E+FKEL AT+ SQ  +VE+A FS ACS VSPLFGCLGIAFKFAEMD
Sbjct: 1   MGDLETEKPLKKIAEAFKELEATIKSQTQEVEVAPFSHACSLVSPLFGCLGIAFKFAEMD 60

Query: 61  YVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILA 120
           YVAKV DLAEASKSI TLQSV+D+D+E N VRK GSH+RNLLRVKRGLDMVRVLFEQI+ 
Sbjct: 61  YVAKVHDLAEASKSIGTLQSVLDKDVERNSVRKGGSHSRNLLRVKRGLDMVRVLFEQIMV 120

Query: 121 AE 122
            E
Sbjct: 121 TE 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443730|ref|XP_004139630.1| PREDICTED: glycolipid transfer protein domain-containing protein 1-like [Cucumis sativus] gi|449475397|ref|XP_004154440.1| PREDICTED: glycolipid transfer protein domain-containing protein 1-like [Cucumis sativus]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 104/120 (86%)

Query: 3   GTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYV 62
           G   +KPL  ISESFK LAA +NS    VE+A FSRACS++SPLFGCLGIAFKFAEMDYV
Sbjct: 2   GDLGEKPLQNISESFKALAANINSGNTTVEVAPFSRACSFISPLFGCLGIAFKFAEMDYV 61

Query: 63  AKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
           AKV+DL E+SKSI++LQ+++D+DIE +CVRKAGSH+RNLLRVKRGLDMVRVLFEQIL  E
Sbjct: 62  AKVNDLVESSKSIVSLQALLDKDIESDCVRKAGSHSRNLLRVKRGLDMVRVLFEQILLTE 121

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823255|ref|XP_002879510.1| hypothetical protein ARALYDRAFT_482433 [Arabidopsis lyrata subsp. lyrata] gi|297325349|gb|EFH55769.1| hypothetical protein ARALYDRAFT_482433 [Arabidopsis lyrata subsp. lyrata]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 102/122 (83%)

Query: 1   MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60
           MA +D DKPL KIS +FKELA  VNS + +V +A FS ACS VSPLFGCLGIAFKFAEMD
Sbjct: 1   MADSDADKPLRKISTAFKELAVIVNSPSPEVPVAQFSHACSLVSPLFGCLGIAFKFAEMD 60

Query: 61  YVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILA 120
           YVAKVDDL  AS SI TL  ++D+DIE NCVRK GSHTRNLLRVKRGLDMV+VLFEQI+A
Sbjct: 61  YVAKVDDLVRASSSISTLVVMMDKDIEANCVRKPGSHTRNLLRVKRGLDMVKVLFEQIIA 120

Query: 121 AE 122
           +E
Sbjct: 121 SE 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584612|ref|XP_002533030.1| conserved hypothetical protein [Ricinus communis] gi|223527192|gb|EEF29361.1| conserved hypothetical protein [Ricinus communis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 107/129 (82%), Gaps = 7/129 (5%)

Query: 1   MAGTDNDKPLTKISESFKELAATVNSQ-------AADVELAAFSRACSYVSPLFGCLGIA 53
           MA  +  KPL KI+E+FKELA T+NSQ       +AD+E+A FSRACS VSPLFGCLGIA
Sbjct: 1   MADFEIQKPLRKIAEAFKELAVTLNSQTMASSTSSADLEVAPFSRACSLVSPLFGCLGIA 60

Query: 54  FKFAEMDYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRV 113
           FKFAEMDYV+KV DL EASKSI T+Q ++++DIE NCVRKAGSH+RNLLRVKRGLDMV+V
Sbjct: 61  FKFAEMDYVSKVRDLGEASKSIGTIQEMVNKDIEENCVRKAGSHSRNLLRVKRGLDMVKV 120

Query: 114 LFEQILAAE 122
           LFEQIL  E
Sbjct: 121 LFEQILITE 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444015|ref|XP_002281564.1| PREDICTED: glycolipid transfer protein domain-containing protein 1 isoform 1 [Vitis vinifera] gi|297740811|emb|CBI30993.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 103/122 (84%)

Query: 1   MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60
           M   D DK L KI E+FKE+A+ VNSQ  D+E+A FS ACS VSPLFGCLGIAFKFAEMD
Sbjct: 1   MEDGDGDKALRKIGEAFKEIASAVNSQTVDIEVAPFSHACSLVSPLFGCLGIAFKFAEMD 60

Query: 61  YVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILA 120
           YVAKV+DLA+ S SI TL +++D DIEGNCVRKAGS++RNLLRVKRGLDMVRVLFE +LA
Sbjct: 61  YVAKVNDLAKTSSSISTLSALLDHDIEGNCVRKAGSNSRNLLRVKRGLDMVRVLFEHMLA 120

Query: 121 AE 122
           ++
Sbjct: 121 SD 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096286|ref|XP_002334703.1| predicted protein [Populus trichocarpa] gi|224138046|ref|XP_002322716.1| predicted protein [Populus trichocarpa] gi|222867346|gb|EEF04477.1| predicted protein [Populus trichocarpa] gi|222874212|gb|EEF11343.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/122 (72%), Positives = 104/122 (85%)

Query: 1   MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60
           M   D  KPL KI+E+FKEL AT+NSQ+ +VE+A FS ACS VSPLFGCLGIAFKFAE+D
Sbjct: 1   MGDLDTAKPLRKIAEAFKELEATINSQSQEVEVAPFSHACSLVSPLFGCLGIAFKFAEVD 60

Query: 61  YVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILA 120
           YVAKV DLAEASKSI TLQS++++DI+GN VRK+GSH+RNLLRVKRGL MV+VLFE IL 
Sbjct: 61  YVAKVLDLAEASKSIGTLQSLLEKDIQGNSVRKSGSHSRNLLRVKRGLVMVKVLFELILV 120

Query: 121 AE 122
            E
Sbjct: 121 TE 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226804|ref|NP_181016.1| glycolipid transfer protein-like protein [Arabidopsis thaliana] gi|3132476|gb|AAC16265.1| unknown protein [Arabidopsis thaliana] gi|45752746|gb|AAS76271.1| At2g34690 [Arabidopsis thaliana] gi|330253916|gb|AEC09010.1| glycolipid transfer protein-like protein [Arabidopsis thaliana]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 101/122 (82%)

Query: 1   MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60
           MA ++ DKPL KIS +FK+LA  VNS   +V +  FS ACS VSPLFGCLGIAFKFAEMD
Sbjct: 1   MADSEADKPLRKISAAFKKLAIIVNSPNPEVPVTQFSHACSLVSPLFGCLGIAFKFAEMD 60

Query: 61  YVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILA 120
           YVAKVDDL  AS SI TL  ++D+DIE +CVRKAGSHTRNLLRVKRGLDMV+VLFEQI+A
Sbjct: 61  YVAKVDDLVRASSSISTLVVMMDKDIEADCVRKAGSHTRNLLRVKRGLDMVKVLFEQIIA 120

Query: 121 AE 122
           +E
Sbjct: 121 SE 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724037|ref|NP_001235508.1| uncharacterized protein LOC100499750 [Glycine max] gi|255626261|gb|ACU13475.1| unknown [Glycine max]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 102/123 (82%), Gaps = 1/123 (0%)

Query: 1   MAGTDNDKPLTKISESFKELAATV-NSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEM 59
           MA  + DK L +I+E+FK+LA  V +SQ+A+V+++ FS ACS VSPLFGCLG+AFKFAEM
Sbjct: 1   MAEGNGDKTLRRIAEAFKDLANVVTDSQSAEVKVSPFSHACSLVSPLFGCLGVAFKFAEM 60

Query: 60  DYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQIL 119
           DYVAKV+DL EASK +  LQS+I+ D++ N VRK GSHTRNLLRVKRGLDMVRVLFEQIL
Sbjct: 61  DYVAKVNDLVEASKCVQNLQSLIELDVQANTVRKGGSHTRNLLRVKRGLDMVRVLFEQIL 120

Query: 120 AAE 122
             E
Sbjct: 121 VTE 123

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414873212|tpg|DAA51769.1| TPA: putative glycolipid transfer protein (GLTP) family protein [Zea mays]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/123 (69%), Positives = 98/123 (79%), Gaps = 1/123 (0%)

Query: 1   MAGTDNDKPLTKISESFKELAATVNSQAA-DVELAAFSRACSYVSPLFGCLGIAFKFAEM 59
           M  +  DKPL +I+ SF+ELAA    Q A  ++  AFSRACS VS LFGCLGIAFKFAEM
Sbjct: 53  MGSSQADKPLRRIAVSFEELAAVAKQQPAVPMDAGAFSRACSNVSVLFGCLGIAFKFAEM 112

Query: 60  DYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQIL 119
           DYVAKVDDL EASKSI TL S+++RDI+ + VRK GSHTRNLLRVKRG+DMV+VLFEQIL
Sbjct: 113 DYVAKVDDLVEASKSISTLPSMVERDIQTDTVRKPGSHTRNLLRVKRGIDMVKVLFEQIL 172

Query: 120 AAE 122
             E
Sbjct: 173 VTE 175

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2061529	206	ACD11 "ACCELERATED CELL DEATH	0.897	0.592	0.721	3.6e-41
TAIR|locus:2135252	229	AT4G39670 [Arabidopsis thalian	0.838	0.497	0.508	7.3e-27
FB|FBgn0050392	223	CG30392 [Drosophila melanogast	0.669	0.408	0.31	2.9e-05

TAIR|locus:2061529 ACD11 "ACCELERATED CELL DEATH 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 88/122 (72%), Positives = 101/122 (82%)

Query:     1 MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMD 60
             MA ++ DKPL KIS +FK+LA  VNS   +V +  FS ACS VSPLFGCLGIAFKFAEMD
Sbjct:     1 MADSEADKPLRKISAAFKKLAIIVNSPNPEVPVTQFSHACSLVSPLFGCLGIAFKFAEMD 60

Query:    61 YVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILA 120
             YVAKVDDL  AS SI TL  ++D+DIE +CVRKAGSHTRNLLRVKRGLDMV+VLFEQI+A
Sbjct:    61 YVAKVDDLVRASSSISTLVVMMDKDIEADCVRKAGSHTRNLLRVKRGLDMVKVLFEQIIA 120

Query:   121 AE 122
             +E
Sbjct:   121 SE 122

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0017089 "glycolipid transporter activity" evidence=IEA

GO:0046836 "glycolipid transport" evidence=IEA

GO:0051861 "glycolipid binding" evidence=IEA

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0010175 "sphingosine transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2135252 AT4G39670 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 61/120 (50%), Positives = 85/120 (70%)

Query:     9 PLTKISESFKELAATVNSQAAD------VELAAFSRACSYVSPLFGCLGIAFKFAEMDYV 62
             PL+ I+E+F++LA  V  Q +D      + L  F  AC++VS LF CLG AFKFAEM+Y+
Sbjct:    27 PLSVITEAFEDLADLVKPQRSDEIDEDELRLDDFCSACTHVSVLFNCLGFAFKFAEMEYI 86

Query:    63 AKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
             AKV DL EASK+  TL +++D D+E   V+  GSH+RNL RV++GLD++R +FEQ L A+
Sbjct:    87 AKVKDLVEASKTFETLHNILDLDVEKETVKTPGSHSRNLRRVRQGLDLIRAIFEQFLIAD 146

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0017089 "glycolipid transporter activity" evidence=IEA

GO:0046836 "glycolipid transport" evidence=IEA

GO:0051861 "glycolipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

FB|FBgn0050392 CG30392 [Drosophila melanogaster (taxid:7227)]

 Score = 102 (41.0 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 31/100 (31%), Positives = 48/100 (48%)

Query:    30 DVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDL-------AEASKSILTLQSVI 82
             DV+L A+  A   +   F  +G  F F   D  +K+D L       AE  +   T ++++
Sbjct:    38 DVQLDAYLAAYEEIMKFFQLMGSVFSFVSSDVRSKIDILYALRAKDAEEQEHFNTFRTML 97

Query:    83 DRDIEGNCVRKAG--SHTRNLLRVKRGLDMVRVLFEQILA 120
             D + E   + + G  S +R LLR+ RGLD V     +I A
Sbjct:    98 DYEKEAQLLTQKGYVSGSRTLLRLHRGLDFVYEFLNRIQA 137


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      136       136   0.00091  102 3  11 22  0.36    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.20u 0.10s 12.30t   Elapsed:  00:00:01
  Total cpu time:  12.20u 0.10s 12.30t   Elapsed:  00:00:01
  Start:  Mon May 20 19:29:53 2013   End:  Mon May 20 19:29:54 2013

GO:0005737 "cytoplasm" evidence=IEA

GO:0051861 "glycolipid binding" evidence=IEA

GO:0046836 "glycolipid transport" evidence=IEA

GO:0017089 "glycolipid transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam08718	148	pfam08718, GLTP, Glycolipid transfer protein (GLTP	6e-25

>gnl|CDD|204041 pfam08718, GLTP, Glycolipid transfer protein (GLTP)

 Score = 92.3 bits (230), Expect = 6e-25
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 30  DVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKS----ILTLQSVIDRD 85
           D+    F  AC  +   F  LG AF F + D    +  L +  +S      TLQ ++ ++
Sbjct: 2   DIPTKPFLEACEELVKFFDKLGTAFSFVKKDIKGNITKLEKRYESDPEEYKTLQDLVLKE 61

Query: 86  IEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEY 123
            E    +K GS TR LL +KRGLD ++V  E++L    
Sbjct: 62  KENGLAKKKGSATRGLLWLKRGLDFIKVFLERLLTDPD 99

GLTP is a cytosolic protein that catalyzes the intermembrane transfer of glycolipids. Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF08718	149	GLTP: Glycolipid transfer protein (GLTP); InterPro	99.97
KOG4189	209	consensus Uncharacterized conserved protein [Funct	99.95
KOG3221	199	consensus Glycolipid transfer protein [Carbohydrat	99.94

>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids

Probab=99.97  E-value=6.2e-31  Score=196.96  Aligned_cols=97  Identities=28%  Similarity=0.500  Sum_probs=90.3

Q ss_pred             CCcChHHHHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHH-----hccccchhHHHHHHHhHhcCCccCCCCchhHHHH
Q 032653           29 ADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLA-----EASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLR  103 (136)
Q Consensus        29 ~~I~~~~fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~-----~~~~~y~TL~~mv~~E~~~~~~~~~~S~sr~LLr  103 (136)
                      ++|++++||+||++++++||+||++|+||++||.+||++|+     .+|++|.||++||++|++.|++++++||||+|||
T Consensus         1 n~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLw   80 (149)
T PF08718_consen    1 NDIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLW   80 (149)
T ss_dssp             SEEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHH
Confidence            47999999999999999999999999999999999999994     5788999999999999999999988999999999


Q ss_pred             HHhHHHHHHHHHHHHHhCcccc
Q 032653          104 VKRGLDMVRVLFEQILAAEYVY  125 (136)
Q Consensus       104 L~RaL~Fi~~~l~~l~~~~~~~  125 (136)
                      |||||+|+..||+++.+++++.
T Consensus        81 L~RaL~Fi~~~l~~l~~~~~~~  102 (149)
T PF08718_consen   81 LHRALEFIVAFLENLLESPDDE  102 (149)
T ss_dssp             HHHHHHHHHHHHHHHHTS--BT
T ss_pred             HHHHHHHHHHHHHHHHhhcchH
Confidence            9999999999999999976654

The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....

>KOG4189 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=6.1e-28  Score=187.01  Aligned_cols=124  Identities=38%  Similarity=0.543  Sum_probs=110.4

Q ss_pred             CCCCCCCCChHHHHHHHHHhHhhhcCCCCCcChHHHHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHHh-ccccchhHH
Q 032653            1 MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE-ASKSILTLQ   79 (136)
Q Consensus         1 ~~~~~~~f~l~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~~-~~~~y~TL~   79 (136)
                      |.|.+...++.++.+.|+.+..++..++++|++++|+.||+++++||.+||++|+||.+|+..||++|.+ ......|+.
T Consensus         1 ~~~~~~~~~~~~i~~~~~~i~~~v~~e~~eV~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~et~r   80 (209)
T KOG4189|consen    1 PFCMEQLGPLPKILQAFKTIEKSVIEEDNEVDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPETYR   80 (209)
T ss_pred             CcchhhccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Confidence            3566777889999999999999999999999999999999999999999999999999999999999943 333367778


Q ss_pred             HHHHHhHhcCCccCCC--CchhHHHHHHhHHHHHHHHHHHHHhCccc
Q 032653           80 SVIDRDIEGNCVRKAG--SHTRNLLRVKRGLDMVRVLFEQILAAEYV  124 (136)
Q Consensus        80 ~mv~~E~~~~~~~~~~--S~sr~LLrL~RaL~Fi~~~l~~l~~~~~~  124 (136)
                      .|++.+.++..+++++  ||||+||||+|||+|++.||.++.+++++
T Consensus        81 tild~~~e~~~~~~~G~~Sgtr~Llrl~R~LefV~efl~~i~as~nD  127 (209)
T KOG4189|consen   81 TILDLDTEESEVGTIGNQSGTRNLLRLNRALEFVIEFLDQIFASTND  127 (209)
T ss_pred             HHHHHHHHHhHhcccCccccchHHHHHHhhHHHHHHHHHHHHcCCCc
Confidence            8888888888888777  99999999999999999999999988653

>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3.2e-27  Score=183.06  Aligned_cols=99  Identities=23%  Similarity=0.386  Sum_probs=93.8

Q ss_pred             cCCCCCcChHHHHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHH----hccccchhHHHHHHHhHhcCCccCCCCchhH
Q 032653           25 NSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLA----EASKSILTLQSVIDRDIEGNCVRKAGSHTRN  100 (136)
Q Consensus        25 ~~~~~~I~~~~fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~----~~~~~y~TL~~mv~~E~~~~~~~~~~S~sr~  100 (136)
                      ..+++.|+|.+||+||.+|++++|+||++|+||++||.|||+++.    +++.+|.+||.+|+.|++....+ ++|||++
T Consensus        12 l~~d~~i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~-~~sat~a   90 (199)
T KOG3221|consen   12 LPDDGKIETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE-KVSATLA   90 (199)
T ss_pred             CCcccCCccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-cchhhHH
Confidence            367899999999999999999999999999999999999999994    89999999999999999998887 8999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhCccc
Q 032653          101 LLRVKRGLDMVRVLFEQILAAEYV  124 (136)
Q Consensus       101 LLrL~RaL~Fi~~~l~~l~~~~~~  124 (136)
                      ||||+|||+|+..||+++.++.++
T Consensus        91 LLWLkRgldF~~~~l~~l~~~~~~  114 (199)
T KOG3221|consen   91 LLWLKRGLDFTLAFLQELVNGESD  114 (199)
T ss_pred             HHHHHhHHHHHHHHHHHHHcchhh
Confidence            999999999999999999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
2i3f_A	224	Glycolipid transfer-like protein; GLTP superfamily	1e-20
3kv0_A	209	HET-C2; GLTP, glycolipid transfer protein, transpo	7e-17
3rzn_A	209	GLTP, glycolipid transfer protein; GLTP-fold, lipi	9e-16

>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A Length = 224

 Score = 82.4 bits (203), Expect = 1e-20
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 5   DNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAK 64
           +  +    I   +K++    +     V L  F  A   V  +    G  F+  + D    
Sbjct: 7   EEKEDFGIIVILWKQVTVKED---GKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGN 63

Query: 65  VDDLAEASKSI--LTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
           +  L  A++++   TLQ +I  +         G  T  LL +KR    +     +++  +
Sbjct: 64  IKKLYRANQTVHAETLQELIIAENS-----PDGLATVALLWLKRAFQFIASFLRRLVVTD 118

>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina} Length = 209

 Score = 72.5 bits (177), Expect = 7e-17
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 2/114 (1%)

Query: 10  LTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLG-IAFKFAEMDYVAKVDDL 68
           L     SF ++          +  A F  A   ++ +F  LG IAF     D +  V+ +
Sbjct: 17  LETFXXSFVDVPID-AEXGNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXI 75

Query: 69  AEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
                +       I   +       + + T  LL + RGL+   +     + + 
Sbjct: 76  RXRMLAAPLESQNIQDLVRNELXTXSHTATEGLLWLVRGLEFTCIALSXNIGST 129

>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A* Length = 209

 Score = 69.4 bits (169), Expect = 9e-16
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 13  ISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLG-IAFKFAEMDYVAKVDDLAEA 71
           ++   + L   + +    +E   F  A S++ P F CLG   F   + D    +  +   
Sbjct: 1   MALLAEHLLKPLPA-DKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAV 59

Query: 72  SKS----ILTLQSVIDRDIEGNCVRKAG-SHTRNLLRVKRGLDMVRVLFEQILAAE 122
             +      TLQ++++ + E           T  L+ +KRGL  ++V  + I   E
Sbjct: 60  YDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGE 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
2i3f_A	224	Glycolipid transfer-like protein; GLTP superfamily	99.98
3kv0_A	209	HET-C2; GLTP, glycolipid transfer protein, transpo	99.97
3rzn_A	209	GLTP, glycolipid transfer protein; GLTP-fold, lipi	99.97

>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A

Probab=99.98  E-value=1.9e-32  Score=216.38  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=99.9

Q ss_pred             CCCCCChHHHHHHHHHhHhhhcCC-CCCcChHHHHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHH-hccc-cchhHHH
Q 032653            4 TDNDKPLTKISESFKELAATVNSQ-AADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLA-EASK-SILTLQS   80 (136)
Q Consensus         4 ~~~~f~l~~~~~~F~~~~~~~~~~-~~~I~~~~fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~-~~~~-~y~TL~~   80 (136)
                      .+..|++.+|..+|++++    .. +++|+|.+||+||++|++|||+||++|+||++||.+||++|. .+|. +|.||++
T Consensus         6 ~~~~f~l~~v~~~F~~~~----~~~~~~I~t~~FL~a~~~l~~~fd~LG~~F~~v~~Dv~gnI~kL~~~~p~~~~~TL~~   81 (224)
T 2i3f_A            6 NEEKEDFGIIVILWKQVT----VKEDGKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYRANQTVHAETLQE   81 (224)
T ss_dssp             -----CTTHHHHHHHTSC----CCTTCCCBHHHHHHHHHHTHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTTCCSBHHH
T ss_pred             cccCCCHHHHHHHHHHhh----ccCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCccchhhhHHH
Confidence            467899999999999998    43 689999999999999999999999999999999999999994 5788 9999999


Q ss_pred             HHHHhHhcCCccCCCCchhHHHHHHhHHHHHHHHHHHHHhCcc
Q 032653           81 VIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEY  123 (136)
Q Consensus        81 mv~~E~~~~~~~~~~S~sr~LLrL~RaL~Fi~~~l~~l~~~~~  123 (136)
                      ||.+|+ +    +++||||+||||||||+|++.||+++.++++
T Consensus        82 mv~~E~-~----k~~S~tr~LLwL~RaL~Fi~~~l~~l~~~~~  119 (224)
T 2i3f_A           82 LIIAEN-S----PDGLATVALLWLKRAFQFIASFLRRLVVTDK  119 (224)
T ss_dssp             HHHHHC-S----TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHH-h----cCCchhHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            999999 4    5789999999999999999999999999887

>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}

Probab=99.97  E-value=3.1e-32  Score=213.23  Aligned_cols=111  Identities=19%  Similarity=0.320  Sum_probs=100.2

Q ss_pred             CCChHHHHHHHHHhHhhhcCC---CCCcChHHHHHHHhHHHHHHhhcCc-chhHHHhhHHHhHHHHH----hccccchhH
Q 032653            7 DKPLTKISESFKELAATVNSQ---AADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLA----EASKSILTL   78 (136)
Q Consensus         7 ~f~l~~~~~~F~~~~~~~~~~---~~~I~~~~fL~a~~~l~~~fd~LG~-~F~fv~~Dv~~kI~~L~----~~~~~y~TL   78 (136)
                      ...+++|..+|++|+    .+   +++|+|.+||+||++|++|||+||+ +|+||++||.+||++|+    .+|.+|.||
T Consensus        14 ~tff~~~~~~F~~~~----~~~~~~~~I~t~~fL~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL   89 (209)
T 3kv0_A           14 ATFLETFXXSFVDVP----IDAEXGNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNI   89 (209)
T ss_dssp             -CGGGGCSSCGGGCC----EEGGGTSEEBHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGGCSBH
T ss_pred             CccHHHHHhhHHhCC----CccccCCCccHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhHHHHHHHhhcCchhhchH
Confidence            345889999999997    44   7899999999999999999999999 99999999999999995    589999999


Q ss_pred             HHHHHHhHhcCCccCCCCchhHHHHHHhHHHHHHHHHHHHHhCcccch
Q 032653           79 QSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQ  126 (136)
Q Consensus        79 ~~mv~~E~~~~~~~~~~S~sr~LLrL~RaL~Fi~~~l~~l~~~~~~~~  126 (136)
                      ++||++|++.    +++||||+||||||||+|++.||+++. +++++-
T Consensus        90 ~~mv~~E~~~----~~~S~tr~LLwL~RaL~fi~~~l~~l~-~~~~~l  132 (209)
T 3kv0_A           90 QDLVRNELXT----XSHTATEGLLWLVRGLEFTCIALSXNI-GSTEEL  132 (209)
T ss_dssp             HHHHHHHTCC-----CCHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCH
T ss_pred             HHHHHHHHHh----cccchHHHHHHHHHHHHHHHHHHHHHc-CCCCcH
Confidence            9999999987    478999999999999999999999999 655443

>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*

Probab=99.97  E-value=4.5e-31  Score=206.49  Aligned_cols=98  Identities=24%  Similarity=0.390  Sum_probs=91.7

Q ss_pred             CCCCcChHHHHHHHhHHHHHHhhcCc-chhHHHhhHHHhHHHHH----hccccchhHHHHHHHhHhcCCccC-CCCchhH
Q 032653           27 QAADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLA----EASKSILTLQSVIDRDIEGNCVRK-AGSHTRN  100 (136)
Q Consensus        27 ~~~~I~~~~fL~a~~~l~~~fd~LG~-~F~fv~~Dv~~kI~~L~----~~~~~y~TL~~mv~~E~~~~~~~~-~~S~sr~  100 (136)
                      ++++|+|.+||+||++|++|||+||+ +|+||++||.|||++|+    ++|.+|.||++||++|++.|++.+ ++||||+
T Consensus        14 ~~~~i~t~~fL~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~~~~~~s~tr~   93 (209)
T 3rzn_A           14 ADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLA   93 (209)
T ss_dssp             TTCCCBHHHHHHHHTTSGGGGGGSSCGGGHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGGGTTSSHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHcCCcccCCchHHHH
Confidence            57899999999999999999999999 89999999999999995    689999999999999999988754 6799999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhCccc
Q 032653          101 LLRVKRGLDMVRVLFEQILAAEYV  124 (136)
Q Consensus       101 LLrL~RaL~Fi~~~l~~l~~~~~~  124 (136)
                      ||||||||+|++.||+++.+++++
T Consensus        94 LLwL~R~L~fi~~~l~~l~~~~~~  117 (209)
T 3rzn_A           94 LMWLKRGLRFIQVFLQSICDGERD  117 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccc
Confidence            999999999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1swxa_	202	a.224.1.1 (A:) Glycolipid transfer protein, GLTP {	3e-19

>d1swxa_ a.224.1.1 (A:) Glycolipid transfer protein, GLTP {Human (Homo sapiens) [TaxId: 9606]} Length = 202

class: All alpha proteins
fold: Glycolipid transfer protein, GLTP
superfamily: Glycolipid transfer protein, GLTP
family: Glycolipid transfer protein, GLTP
domain: Glycolipid transfer protein, GLTP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 3e-19
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 6/104 (5%)

Query: 30  DVELAAFSRACSYVSPLFGCLG-IAFKFAEMDYVAKVDDLAEASKS----ILTLQSVIDR 84
            +E   F  A S++ P F CLG   F   + D    +  +     +      TLQ++++ 
Sbjct: 10  QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEV 69

Query: 85  DIEGNCVRKAGSH-TRNLLRVKRGLDMVRVLFEQILAAEYVYQH 127
           + E           T  L+ +KRGL  ++V  + I   E    H
Sbjct: 70  EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENH 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1swxa_	202	Glycolipid transfer protein, GLTP {Human (Homo sap	99.97

>d1swxa_ a.224.1.1 (A:) Glycolipid transfer protein, GLTP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Glycolipid transfer protein, GLTP
superfamily: Glycolipid transfer protein, GLTP
family: Glycolipid transfer protein, GLTP
domain: Glycolipid transfer protein, GLTP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-31  Score=202.40  Aligned_cols=98  Identities=24%  Similarity=0.392  Sum_probs=90.7

Q ss_pred             CCCCcChHHHHHHHhHHHHHHhhcCc-chhHHHhhHHHhHHHHH----hccccchhHHHHHHHhHhcCCccCC-CCchhH
Q 032653           27 QAADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLA----EASKSILTLQSVIDRDIEGNCVRKA-GSHTRN  100 (136)
Q Consensus        27 ~~~~I~~~~fL~a~~~l~~~fd~LG~-~F~fv~~Dv~~kI~~L~----~~~~~y~TL~~mv~~E~~~~~~~~~-~S~sr~  100 (136)
                      +|++|+|.+||+||+++++|||+||+ +|+||++||.|||++|+    ++|++|.||++||++|++.+..+++ +||||+
T Consensus         7 ~d~~i~t~~fL~a~~~i~~~~~~lG~~~F~~v~~Dv~gnI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~k~~~~s~t~~   86 (202)
T d1swxa_           7 ADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLA   86 (202)
T ss_dssp             TTCCCBHHHHHHHHTTSGGGGGTTSSCSSHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGGGTTSSHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHcCcHHhhHHHHHHHHHHHhccccCCCCchHHH
Confidence            57899999999999999999999995 89999999999999994    7899999999999999998877654 589999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhCccc
Q 032653          101 LLRVKRGLDMVRVLFEQILAAEYV  124 (136)
Q Consensus       101 LLrL~RaL~Fi~~~l~~l~~~~~~  124 (136)
                      ||||||||+|++.||+++.+++++
T Consensus        87 LLwL~RaL~Fi~~fl~~l~~~~~~  110 (202)
T d1swxa_          87 LMWLKRGLRFIQVFLQSICDGERD  110 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999987654